Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05351.t1 | RHN59169.1 | 67.7 | 353 | 73 | 3 | 2 | 351 | 172 | 486 | 1.10E-122 | 449.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05351.t1 | A0A396I0R2 | 67.7 | 353 | 73 | 3 | 2 | 351 | 172 | 486 | 7.8e-123 | 449.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05351 | MS.gene057814 | 0.935726 | 5.39E-97 | -1.69E-46 |
| MS.gene05351 | MS.gene09535 | 0.816288 | 5.97E-52 | -1.69E-46 |
| MS.gene05351 | MS.gene27786 | 0.949644 | 8.39E-108 | -1.69E-46 |
| MS.gene05351 | MS.gene27788 | 0.936574 | 1.40E-97 | -1.69E-46 |
| MS.gene05351 | MS.gene43647 | 0.937797 | 1.93E-98 | -1.69E-46 |
| MS.gene05351 | MS.gene52131 | 0.945648 | 2.06E-104 | -1.69E-46 |
| MS.gene05351 | MS.gene61424 | 0.801998 | 6.91E-49 | -1.69E-46 |
| MS.gene05351 | MS.gene67335 | 0.867926 | 9.54E-66 | -1.69E-46 |
| MS.gene05351 | MS.gene72807 | 0.845474 | 3.97E-59 | -1.69E-46 |
| MS.gene05351 | MS.gene78844 | 0.836815 | 7.50E-57 | -1.69E-46 |
| MS.gene05351 | MS.gene80973 | 0.833386 | 5.49E-56 | -1.69E-46 |
| MS.gene05351 | MS.gene82123 | 0.855853 | 4.77E-62 | -1.69E-46 |
| MS.gene05351 | MS.gene87215 | 0.806625 | 7.51E-50 | -1.69E-46 |
| MS.gene05351 | MS.gene91000 | 0.88501 | 1.17E-71 | -1.69E-46 |
| MS.gene05351 | MS.gene91475 | 0.840808 | 6.96E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05351.t1 | MTR_0029s0140 | 83.333 | 144 | 24 | 0 | 197 | 340 | 241 | 384 | 2.94e-71 | 227 |
| MS.gene05351.t1 | MTR_0029s0140 | 78.788 | 66 | 14 | 0 | 1 | 66 | 174 | 239 | 9.38e-33 | 126 |
| MS.gene05351.t1 | MTR_2g102860 | 83.453 | 139 | 23 | 0 | 205 | 343 | 13 | 151 | 1.31e-70 | 218 |
| MS.gene05351.t1 | MTR_4g017750 | 83.217 | 143 | 20 | 1 | 198 | 340 | 110 | 248 | 2.25e-69 | 218 |
| MS.gene05351.t1 | MTR_5g080310 | 79.866 | 149 | 26 | 1 | 199 | 347 | 122 | 266 | 4.58e-69 | 218 |
| MS.gene05351.t1 | MTR_2g020090 | 68.790 | 157 | 48 | 1 | 184 | 340 | 49 | 204 | 5.83e-69 | 216 |
| MS.gene05351.t1 | MTR_3g058800 | 73.239 | 142 | 37 | 1 | 199 | 340 | 10 | 150 | 2.80e-67 | 209 |
| MS.gene05351.t1 | MTR_6g463490 | 83.761 | 117 | 19 | 0 | 227 | 343 | 3 | 119 | 2.39e-65 | 203 |
| MS.gene05351.t1 | MTR_1g023240 | 74.051 | 158 | 35 | 1 | 180 | 337 | 17 | 168 | 4.95e-64 | 204 |
| MS.gene05351.t1 | MTR_4g023110 | 73.134 | 134 | 35 | 1 | 197 | 330 | 7 | 139 | 7.72e-62 | 194 |
| MS.gene05351.t1 | MTR_8g027455 | 54.140 | 157 | 63 | 4 | 197 | 347 | 23 | 176 | 2.62e-43 | 155 |
| MS.gene05351.t1 | MTR_1g077650 | 66.346 | 104 | 34 | 1 | 198 | 301 | 46 | 148 | 1.24e-40 | 141 |
| MS.gene05351.t1 | MTR_7g035425 | 38.182 | 165 | 87 | 5 | 5 | 157 | 179 | 340 | 1.63e-23 | 99.8 |
| MS.gene05351.t1 | MTR_7g037680 | 29.858 | 211 | 116 | 5 | 110 | 319 | 17 | 196 | 6.85e-21 | 90.9 |
| MS.gene05351.t1 | MTR_5g053700 | 82.000 | 50 | 5 | 1 | 291 | 340 | 1 | 46 | 3.13e-19 | 80.9 |
| MS.gene05351.t1 | MTR_2g077640 | 28.837 | 215 | 113 | 6 | 67 | 279 | 34 | 210 | 1.09e-17 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 110 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCTGGTTTAGGCTCTTTC+AGG | 0.183435 | 6.3:-75395716 | MS.gene05351:intron |
| CATGATTGAGGGTTAGTCTT+AGG | 0.184506 | 6.3:+75393548 | None:intergenic |
| TGTGGGAGGGACCTTGAGCC+TGG | 0.232485 | 6.3:+75393356 | None:intergenic |
| CTGGCGTCAGCTCAGGCTGC+TGG | 0.280344 | 6.3:+75393512 | None:intergenic |
| CCCGCCTATCTTTGGTGAAT+TGG | 0.291684 | 6.3:-75395464 | MS.gene05351:CDS |
| ATAACTGCTATCATCACTTT+TGG | 0.303053 | 6.3:-75395774 | MS.gene05351:CDS |
| GATTGCTTCAGCAGCTGGTT+TGG | 0.317185 | 6.3:+75395810 | None:intergenic |
| TGGTGAATTGGTTAAGTATT+GGG | 0.326447 | 6.3:-75395452 | MS.gene05351:CDS |
| TAATGCAGACCAAGTGTTCT+TGG | 0.346146 | 6.3:-75395612 | MS.gene05351:intron |
| CCGGTTCTTCTTTGCTTTGT+CGG | 0.346522 | 6.3:+75395405 | None:intergenic |
| CTTGCCGAGGCTATTTCTAA+TGG | 0.350981 | 6.3:-75393697 | MS.gene05351:CDS |
| TGGATTGGCCCGCCTATCTT+TGG | 0.360603 | 6.3:-75395472 | MS.gene05351:CDS |
| GGTCTGATTGCTTCAGCAGC+TGG | 0.376829 | 6.3:+75395805 | None:intergenic |
| CGCATCTCTGGCGTCAGCTC+AGG | 0.380128 | 6.3:+75393505 | None:intergenic |
| CGAGAATCTCTCGGATAATC+CGG | 0.382857 | 6.3:+75395952 | None:intergenic |
| ATGATTGAGGGTTAGTCTTA+GGG | 0.390145 | 6.3:+75393549 | None:intergenic |
| TTGTCTCCTCAAACCGCATA+CGG | 0.400455 | 6.3:+75395509 | None:intergenic |
| AGGAGCAGCTGGCACAGTTT+AGG | 0.406187 | 6.3:-75393384 | MS.gene05351:CDS |
| GAAGAACCGGGCGTCGGAAA+AGG | 0.413034 | 6.3:-75395392 | MS.gene05351:CDS |
| GCTATACGGTCTTGGTAACT+TGG | 0.413255 | 6.3:-75393605 | MS.gene05351:CDS |
| TGAATAAGCTCCCGCATCTC+TGG | 0.423368 | 6.3:+75393493 | None:intergenic |
| CCGACAAAGCAAAGAAGAAC+CGG | 0.424122 | 6.3:-75395405 | MS.gene05351:CDS |
| TTGGTGAATTGGTTAAGTAT+TGG | 0.427319 | 6.3:-75395453 | MS.gene05351:CDS |
| AATGCAGACCAAGTGTTCTT+GGG | 0.435174 | 6.3:-75395611 | MS.gene05351:intron |
| TTGCCGAGGCTATTTCTAAT+GGG | 0.436783 | 6.3:-75393696 | MS.gene05351:CDS |
| TGAGCTGACGCCAGAGATGC+GGG | 0.441007 | 6.3:-75393503 | MS.gene05351:CDS |
| TCCTCCTCATCTACCGGATA+AGG | 0.441120 | 6.3:+75393301 | None:intergenic |
| CTCGTCGTCGATTCATCTTA+AGG | 0.445948 | 6.3:-75395933 | MS.gene05351:CDS |
| TGGCGTCAGCTCAGGCTGCT+GGG | 0.447507 | 6.3:+75393513 | None:intergenic |
| AAGAAGAAGGGAAAGCTATA+CGG | 0.450481 | 6.3:-75393619 | MS.gene05351:CDS |
| ACCGGATAAGGCTCAACATT+GGG | 0.453953 | 6.3:+75393313 | None:intergenic |
| TTAATTGCTCTTGCGTCAAA+CGG | 0.464925 | 6.3:+75393470 | None:intergenic |
| AGGACCCTTCACCATGATTG+AGG | 0.467659 | 6.3:+75393536 | None:intergenic |
| TTAACCAATTCACCAAAGAT+AGG | 0.468585 | 6.3:+75395460 | None:intergenic |
| AAGAGCCCGTATGCGGTTTG+AGG | 0.473397 | 6.3:-75395515 | MS.gene05351:CDS |
| AAGGGAAAGCTATACGGTCT+TGG | 0.480141 | 6.3:-75393613 | MS.gene05351:CDS |
| GCTCCTCATATGACCTTTGA+CGG | 0.484551 | 6.3:+75393401 | None:intergenic |
| TAGCACGCTCGTCGCAGTAT+TGG | 0.486252 | 6.3:+75395154 | None:intergenic |
| TTGATGCAACACTACCCTTC+CGG | 0.489648 | 6.3:+75393572 | None:intergenic |
| CGGAGAGCACGCTGAGCGTA+TGG | 0.490492 | 6.3:-75395335 | MS.gene05351:intron |
| CATAGCTTCCCAAGAACACT+TGG | 0.490648 | 6.3:+75395603 | None:intergenic |
| TCCCAATGTTGAGCCTTATC+CGG | 0.490951 | 6.3:-75393314 | MS.gene05351:CDS |
| TCGTGAAGCTCGTTAATAAA+CGG | 0.493110 | 6.3:+75395201 | None:intergenic |
| ATGATAGCAGTTATGAATGA+TGG | 0.496630 | 6.3:+75395783 | None:intergenic |
| TTGGGCGTCTGAGGCGTTCA+AGG | 0.500299 | 6.3:-75395434 | MS.gene05351:CDS |
| AAGAACCGGGCGTCGGAAAA+GGG | 0.501037 | 6.3:-75395391 | MS.gene05351:CDS |
| ATTCTTTGACCTTCAACACT+TGG | 0.510375 | 6.3:-75393660 | MS.gene05351:CDS |
| AAGATTTGCTTAACCGTCAA+AGG | 0.511841 | 6.3:-75393414 | MS.gene05351:CDS |
| AATACTGCGACGAGCGTGCT+AGG | 0.515851 | 6.3:-75395152 | MS.gene05351:CDS |
| GCTTCAGCAGCTGGTTTGGA+AGG | 0.518909 | 6.3:+75395814 | None:intergenic |
| GGCACAGTTTAGGCAAGCCC+AGG | 0.523133 | 6.3:-75393374 | MS.gene05351:CDS |
| AGACAAGAAAGCGGCCACAT+TGG | 0.524562 | 6.3:-75395492 | MS.gene05351:CDS |
| GTGGGAGGGACCTTGAGCCT+GGG | 0.524940 | 6.3:+75393357 | None:intergenic |
| AGAAAGCGGCCACATTGGAT+TGG | 0.531391 | 6.3:-75395487 | MS.gene05351:CDS |
| GGACCCTTCACCATGATTGA+GGG | 0.531656 | 6.3:+75393537 | None:intergenic |
| TCATCATCCTCCTCATCTAC+CGG | 0.536805 | 6.3:+75393295 | None:intergenic |
| TAACCGTCAAAGGTCATATG+AGG | 0.541572 | 6.3:-75393404 | MS.gene05351:CDS |
| CCAATTCACCAAAGATAGGC+GGG | 0.544604 | 6.3:+75395464 | None:intergenic |
| TTAAAAGCGGCGCACTAGTG+TGG | 0.545514 | 6.3:+75393338 | None:intergenic |
| AAGGTCATATGAGGAGCAGC+TGG | 0.546890 | 6.3:-75393395 | MS.gene05351:CDS |
| TAAAAGCGGCGCACTAGTGT+GGG | 0.551339 | 6.3:+75393339 | None:intergenic |
| CTGAGCTGACGCCAGAGATG+CGG | 0.553348 | 6.3:-75393504 | MS.gene05351:CDS |
| AAATAGCCTCGGCAAGCTGC+CGG | 0.555959 | 6.3:+75393704 | None:intergenic |
| CGAGCGTGCTAGGAGTGTGC+AGG | 0.557294 | 6.3:-75395142 | MS.gene05351:intron |
| AGTTGCTGGAGACAAGAAGA+AGG | 0.557374 | 6.3:-75393632 | MS.gene05351:CDS |
| TACCGGATAAGGCTCAACAT+TGG | 0.558734 | 6.3:+75393312 | None:intergenic |
| ATAGGCTAGGAGGTTACGTC+GGG | 0.559517 | 6.3:-75395226 | MS.gene05351:intron |
| TTTAGGCAAGCCCAGGCTCA+AGG | 0.561956 | 6.3:-75393367 | MS.gene05351:CDS |
| CTAAGACTAACCCTCAATCA+TGG | 0.562434 | 6.3:-75393547 | MS.gene05351:CDS |
| GTAACTTGGCTGCTAACTAC+CGG | 0.570124 | 6.3:-75393591 | MS.gene05351:CDS |
| ACGCTCGTCGCAGTATTGGC+CGG | 0.570260 | 6.3:+75395158 | None:intergenic |
| TGTCTCCTCAAACCGCATAC+GGG | 0.571839 | 6.3:+75395510 | None:intergenic |
| GGTTAAGTATTGGGCGTCTG+AGG | 0.575914 | 6.3:-75395443 | MS.gene05351:CDS |
| AGCAAAGAAGAACCGGGCGT+CGG | 0.582886 | 6.3:-75395398 | MS.gene05351:CDS |
| TTGAACAGGAGGAGTATGAC+CGG | 0.586858 | 6.3:-75393723 | MS.gene05351:intron |
| CTAACCCTCAATCATGGTGA+AGG | 0.587704 | 6.3:-75393541 | MS.gene05351:CDS |
| TGAACTTACGAGTTTCCACT+AGG | 0.589440 | 6.3:+75395910 | None:intergenic |
| GGATGATGAGGATCATGATG+AGG | 0.590861 | 6.3:-75393281 | MS.gene05351:CDS |
| AGAGCAATTAACGCAACAGA+TGG | 0.592019 | 6.3:-75393458 | MS.gene05351:CDS |
| GAGAATCTCTCGGATAATCC+GGG | 0.595824 | 6.3:+75395953 | None:intergenic |
| AAGCGGCGCACTAGTGTGGG+AGG | 0.600468 | 6.3:+75393342 | None:intergenic |
| GTATGACCGGCAGCTTGCCG+AGG | 0.601524 | 6.3:-75393710 | MS.gene05351:CDS |
| CGATTCATCTTAAGGCCTAG+TGG | 0.601629 | 6.3:-75395925 | MS.gene05351:CDS |
| CGACAAAGCAAAGAAGAACC+GGG | 0.601764 | 6.3:-75395404 | MS.gene05351:CDS |
| TGATAGCAGTTATGAATGAT+GGG | 0.610829 | 6.3:+75395784 | None:intergenic |
| TACTTAGAAGAGCCCGTATG+CGG | 0.616606 | 6.3:-75395522 | MS.gene05351:CDS |
| GATGTTTAATGATGTTTACC+CGG | 0.618633 | 6.3:-75395971 | MS.gene05351:CDS |
| GCCTTATCCGGTAGATGAGG+AGG | 0.618778 | 6.3:-75393302 | MS.gene05351:CDS |
| ACCAATTCACCAAAGATAGG+CGG | 0.624368 | 6.3:+75395463 | None:intergenic |
| CTTGGCTGCTAACTACCGGA+AGG | 0.625442 | 6.3:-75393587 | MS.gene05351:CDS |
| GTTGCTGGAGACAAGAAGAA+GGG | 0.632114 | 6.3:-75393631 | MS.gene05351:CDS |
| AATAGGCTAGGAGGTTACGT+CGG | 0.632889 | 6.3:-75395227 | MS.gene05351:intron |
| AATCGACGACGAGAATCTCT+CGG | 0.634346 | 6.3:+75395943 | None:intergenic |
| TAACCCTCAATCATGGTGAA+GGG | 0.637969 | 6.3:-75393540 | MS.gene05351:CDS |
| GGTAGATGAGGAGGATGATG+AGG | 0.638477 | 6.3:-75393293 | MS.gene05351:CDS |
| CATGTGACAAATAGGCTAGG+AGG | 0.639349 | 6.3:-75395236 | MS.gene05351:intron |
| TGAGCCTTATCCGGTAGATG+AGG | 0.639385 | 6.3:-75393305 | MS.gene05351:CDS |
| AGACCCATTAGAAATAGCCT+CGG | 0.644902 | 6.3:+75393693 | None:intergenic |
| ACTGGTGGTTGCTTAAGCAA+CGG | 0.650281 | 6.3:-75395355 | MS.gene05351:CDS |
| CGTCAGCTCAGGCTGCTGGG+AGG | 0.651312 | 6.3:+75393516 | None:intergenic |
| TTGGAAGACATATGGTGATG+TGG | 0.652180 | 6.3:-75395755 | MS.gene05351:CDS |
| TCAACATTGGGACTTAAAAG+CGG | 0.654070 | 6.3:+75393325 | None:intergenic |
| AGCGGCGCACTAGTGTGGGA+GGG | 0.654626 | 6.3:+75393343 | None:intergenic |
| TTGGCTGCTAACTACCGGAA+GGG | 0.659168 | 6.3:-75393586 | MS.gene05351:CDS |
| GGAGGATGCATTCACACTGG+TGG | 0.660778 | 6.3:-75395370 | MS.gene05351:CDS |
| GCAACAGATGGCAAGTCAAG+CGG | 0.662263 | 6.3:-75393446 | MS.gene05351:CDS |
| AACCGGGCGTCGGAAAAGGG+AGG | 0.663571 | 6.3:-75395388 | MS.gene05351:CDS |
| AAGGGAGGATGCATTCACAC+TGG | 0.674246 | 6.3:-75395373 | MS.gene05351:CDS |
| ATAGGCGGGCCAATCCAATG+TGG | 0.757504 | 6.3:+75395478 | None:intergenic |
| GGTTTGAGGAGACAAGAAAG+CGG | 0.763875 | 6.3:-75395501 | MS.gene05351:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATAATAAACAAAATA+AGG | + | chr6.3:75395416-75395435 | None:intergenic | 10.0% |
| !! | ACAATCAAAATTAAATGATA+TGG | + | chr6.3:75393965-75393984 | None:intergenic | 15.0% |
| !!! | AAAATTGAGGATTTTATAAA+AGG | - | chr6.3:75394329-75394348 | MS.gene05351:intron | 15.0% |
| !!! | TATTTTGTTATTATTTGAAC+AGG | - | chr6.3:75395509-75395528 | MS.gene05351:CDS | 15.0% |
| !! | CAGTAAAAATGAAATTGATA+TGG | + | chr6.3:75394580-75394599 | None:intergenic | 20.0% |
| !! | TATAAAGATTAAGAACACAT+TGG | + | chr6.3:75395243-75395262 | None:intergenic | 20.0% |
| !! | TGAAAAATTTGAGAAAAATC+AGG | - | chr6.3:75394489-75394508 | MS.gene05351:intron | 20.0% |
| !!! | AAGCCTTATAATATCTATTT+AGG | + | chr6.3:75394943-75394962 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTAATCCGAATTG+TGG | - | chr6.3:75394220-75394239 | MS.gene05351:intron | 20.0% |
| !!! | TTTTATTTCATGTGACAAAT+AGG | - | chr6.3:75394002-75394021 | MS.gene05351:intron | 20.0% |
| ! | AAAATATTTAAGGACAGAAC+TGG | + | chr6.3:75395495-75395514 | None:intergenic | 25.0% |
| ! | AAGGAAACTAATCATAAGAA+TGG | + | chr6.3:75395397-75395416 | None:intergenic | 25.0% |
| ! | AATTTCAGTTAAGCAAAAGT+TGG | + | chr6.3:75394253-75394272 | None:intergenic | 25.0% |
| ! | ACAAATTCATAAGCAATAAC+AGG | + | chr6.3:75394815-75394834 | None:intergenic | 25.0% |
| ! | ATTTCAGTTAAGCAAAAGTT+GGG | + | chr6.3:75394252-75394271 | None:intergenic | 25.0% |
| ! | CAAATTCATAAGCAATAACA+GGG | + | chr6.3:75394814-75394833 | None:intergenic | 25.0% |
| ! | GAAAACTATATAGAATCAAG+TGG | + | chr6.3:75395154-75395173 | None:intergenic | 25.0% |
| ! | TGGCCTAAATAGATATTATA+AGG | - | chr6.3:75394937-75394956 | MS.gene05351:intron | 25.0% |
| !! | ACTTTTGCTTAACTGAAATT+TGG | - | chr6.3:75394253-75394272 | MS.gene05351:intron | 25.0% |
| !! | TAGAATTTAGAACTTATCAC+AGG | - | chr6.3:75395208-75395227 | MS.gene05351:CDS | 25.0% |
| !! | TGTTTCTGTCAAAAAAATTG+AGG | - | chr6.3:75394316-75394335 | MS.gene05351:intron | 25.0% |
| !!! | GCTTTTTGAAAGAATAGAAA+AGG | - | chr6.3:75394538-75394557 | MS.gene05351:intron | 25.0% |
| !!! | TTTGTTATTATTTGAACAGG+AGG | - | chr6.3:75395512-75395531 | MS.gene05351:CDS | 25.0% |
| AAAACTGAGTACTAAGGTAA+GGG | + | chr6.3:75394972-75394991 | None:intergenic | 30.0% | |
| AAAGTCGATTAAAATTACCG+CGG | + | chr6.3:75394770-75394789 | None:intergenic | 30.0% | |
| AAGACTCATAAGTCAACATT+AGG | + | chr6.3:75394725-75394744 | None:intergenic | 30.0% | |
| AATAACAGAGAAACAGTGTA+AGG | + | chr6.3:75395465-75395484 | None:intergenic | 30.0% | |
| ATGATAGCAGTTATGAATGA+TGG | + | chr6.3:75393466-75393485 | None:intergenic | 30.0% | |
| CATTACATAGCTCAATTCTT+CGG | + | chr6.3:75394646-75394665 | None:intergenic | 30.0% | |
| TGAGACTTATGATAAAACTC+TGG | + | chr6.3:75394426-75394445 | None:intergenic | 30.0% | |
| TGATAGCAGTTATGAATGAT+GGG | + | chr6.3:75393465-75393484 | None:intergenic | 30.0% | |
| TGGTGAATTGGTTAAGTATT+GGG | - | chr6.3:75393794-75393813 | MS.gene05351:intron | 30.0% | |
| TGTGAATTATGATCGATTGT+TGG | - | chr6.3:75394376-75394395 | MS.gene05351:intron | 30.0% | |
| TGTTGTTGAATTTCTCTGAT+TGG | - | chr6.3:75394598-75394617 | MS.gene05351:intron | 30.0% | |
| TTAACCAATTCACCAAAGAT+AGG | + | chr6.3:75393789-75393808 | None:intergenic | 30.0% | |
| TTATGATAAAACTCTGGTGA+GGG | + | chr6.3:75394420-75394439 | None:intergenic | 30.0% | |
| TTGGTGAATTGGTTAAGTAT+TGG | - | chr6.3:75393793-75393812 | MS.gene05351:intron | 30.0% | |
| TTTCAGTTAAGCAAAAGTTG+GGG | + | chr6.3:75394251-75394270 | None:intergenic | 30.0% | |
| TTTGTGTTATAGATGTCTTG+CGG | - | chr6.3:75394830-75394849 | MS.gene05351:intron | 30.0% | |
| ! | ATAACTGCTATCATCACTTT+TGG | - | chr6.3:75393472-75393491 | MS.gene05351:CDS | 30.0% |
| ! | CTCTTGTTCTAGATATGATT+TGG | - | chr6.3:75394282-75394301 | MS.gene05351:intron | 30.0% |
| ! | TTTTCTTGCAATCACATAAC+AGG | + | chr6.3:75395331-75395350 | None:intergenic | 30.0% |
| !!! | AACTTTTTTCCAAGTGTTGA+AGG | + | chr6.3:75395598-75395617 | None:intergenic | 30.0% |
| AACACTTGGAAAAAAGTTGC+TGG | - | chr6.3:75395600-75395619 | MS.gene05351:CDS | 35.0% | |
| AAGAAGAAGGGAAAGCTATA+CGG | - | chr6.3:75395627-75395646 | MS.gene05351:intron | 35.0% | |
| AAGATTAAGAACACATTGGC+TGG | + | chr6.3:75395239-75395258 | None:intergenic | 35.0% | |
| AATGACAAACAAGACAGAAC+TGG | + | chr6.3:75394194-75394213 | None:intergenic | 35.0% | |
| ATTCTTTGACCTTCAACACT+TGG | - | chr6.3:75395586-75395605 | MS.gene05351:CDS | 35.0% | |
| CAAAACTGAGTACTAAGGTA+AGG | + | chr6.3:75394973-75394992 | None:intergenic | 35.0% | |
| CGAAGAATTGAGCTATGTAA+TGG | - | chr6.3:75394644-75394663 | MS.gene05351:intron | 35.0% | |
| CTAGCACACATAATTATCTC+AGG | + | chr6.3:75394466-75394485 | None:intergenic | 35.0% | |
| CTTATGATAAAACTCTGGTG+AGG | + | chr6.3:75394421-75394440 | None:intergenic | 35.0% | |
| GAAACGCACAAAAATAAGTC+CGG | - | chr6.3:75394069-75394088 | MS.gene05351:intron | 35.0% | |
| GGCAAGTTGTAATTGCTTAT+AGG | + | chr6.3:75395305-75395324 | None:intergenic | 35.0% | |
| TCAACATTGGGACTTAAAAG+CGG | + | chr6.3:75395924-75395943 | None:intergenic | 35.0% | |
| TCGTGAAGCTCGTTAATAAA+CGG | + | chr6.3:75394048-75394067 | None:intergenic | 35.0% | |
| TTAATTGCTCTTGCGTCAAA+CGG | + | chr6.3:75395779-75395798 | None:intergenic | 35.0% | |
| TTGCAATCACATAACAGGTT+TGG | + | chr6.3:75395326-75395345 | None:intergenic | 35.0% | |
| TTTCATGTGACAAATAGGCT+AGG | - | chr6.3:75394007-75394026 | MS.gene05351:intron | 35.0% | |
| ! | AAGATTTGCTTAACCGTCAA+AGG | - | chr6.3:75395832-75395851 | MS.gene05351:intron | 35.0% |
| ! | ATGATAATGAAAAAGAGCGC+TGG | - | chr6.3:75393514-75393533 | MS.gene05351:CDS | 35.0% |
| ! | TACCTTAGTACTCAGTTTTG+TGG | - | chr6.3:75394973-75394992 | MS.gene05351:intron | 35.0% |
| ! | TTTTAATCCGAATTGTGGTC+TGG | - | chr6.3:75394225-75394244 | MS.gene05351:intron | 35.0% |
| !! | ACCTTAGTACTCAGTTTTGT+GGG | - | chr6.3:75394974-75394993 | MS.gene05351:intron | 35.0% |
| !! | ATGATTGAGGGTTAGTCTTA+GGG | + | chr6.3:75395700-75395719 | None:intergenic | 35.0% |
| !! | CATCACTTTTGGAAGACATA+TGG | - | chr6.3:75393483-75393502 | MS.gene05351:CDS | 35.0% |
| !! | CGACTTTGTTGATTCTTACA+AGG | - | chr6.3:75394783-75394802 | MS.gene05351:intron | 35.0% |
| !! | GTTCTGTCTTGTTTGTCATT+TGG | - | chr6.3:75394194-75394213 | MS.gene05351:intron | 35.0% |
| !!! | GCACTATTTTTGTTGCAGTT+TGG | - | chr6.3:75394166-75394185 | MS.gene05351:intron | 35.0% |
| AATGCAGACCAAGTGTTCTT+GGG | - | chr6.3:75393635-75393654 | MS.gene05351:CDS | 40.0% | |
| ACCAATTCACCAAAGATAGG+CGG | + | chr6.3:75393786-75393805 | None:intergenic | 40.0% | |
| AGACCCATTAGAAATAGCCT+CGG | + | chr6.3:75395556-75395575 | None:intergenic | 40.0% | |
| AGAGCAATTAACGCAACAGA+TGG | - | chr6.3:75395788-75395807 | MS.gene05351:CDS | 40.0% | |
| ATCTCAGGAGTTGCATCTTT+AGG | + | chr6.3:75394451-75394470 | None:intergenic | 40.0% | |
| ATTTAAGGACAGAACTGGCA+AGG | + | chr6.3:75395490-75395509 | None:intergenic | 40.0% | |
| CTAAGACTAACCCTCAATCA+TGG | - | chr6.3:75395699-75395718 | MS.gene05351:intron | 40.0% | |
| GAAGGTGATGAATGATACAG+AGG | + | chr6.3:75394869-75394888 | None:intergenic | 40.0% | |
| TAACCCTCAATCATGGTGAA+GGG | - | chr6.3:75395706-75395725 | MS.gene05351:intron | 40.0% | |
| TAACCGTCAAAGGTCATATG+AGG | - | chr6.3:75395842-75395861 | MS.gene05351:intron | 40.0% | |
| TAATGCAGACCAAGTGTTCT+TGG | - | chr6.3:75393634-75393653 | MS.gene05351:CDS | 40.0% | |
| TCCCACAAAACTGAGTACTA+AGG | + | chr6.3:75394978-75394997 | None:intergenic | 40.0% | |
| TCTATTTAGGCCATGTCTCT+AGG | + | chr6.3:75394930-75394949 | None:intergenic | 40.0% | |
| TGAACTTACGAGTTTCCACT+AGG | + | chr6.3:75393339-75393358 | None:intergenic | 40.0% | |
| TGTCTCTAGGCAATGAAGAA+CGG | + | chr6.3:75394917-75394936 | None:intergenic | 40.0% | |
| TTAAAATTACCGCGGACAGA+TGG | + | chr6.3:75394762-75394781 | None:intergenic | 40.0% | |
| TTCTTCATTGCCTAGAGACA+TGG | - | chr6.3:75394917-75394936 | MS.gene05351:intron | 40.0% | |
| ! | CTTGTCGTATCTCTCAGTTT+TGG | - | chr6.3:75394131-75394150 | MS.gene05351:intron | 40.0% |
| ! | TTGGAAGACATATGGTGATG+TGG | - | chr6.3:75393491-75393510 | MS.gene05351:CDS | 40.0% |
| !! | ATGAAAAAGAGCGCTGGTTT+AGG | - | chr6.3:75393520-75393539 | MS.gene05351:CDS | 40.0% |
| !! | CATGATTGAGGGTTAGTCTT+AGG | + | chr6.3:75395701-75395720 | None:intergenic | 40.0% |
| !! | TTGCCGAGGCTATTTCTAAT+GGG | - | chr6.3:75395550-75395569 | MS.gene05351:CDS | 40.0% |
| AAGGGAAAGCTATACGGTCT+TGG | - | chr6.3:75395633-75395652 | MS.gene05351:intron | 45.0% | |
| AATAGGCTAGGAGGTTACGT+CGG | - | chr6.3:75394019-75394038 | MS.gene05351:intron | 45.0% | |
| AATCGACGACGAGAATCTCT+CGG | + | chr6.3:75393306-75393325 | None:intergenic | 45.0% | |
| ACCGGATAAGGCTCAACATT+GGG | + | chr6.3:75395936-75395955 | None:intergenic | 45.0% | |
| ACTGGTGGTTGCTTAAGCAA+CGG | - | chr6.3:75393891-75393910 | MS.gene05351:intron | 45.0% | |
| AGTTGCTGGAGACAAGAAGA+AGG | - | chr6.3:75395614-75395633 | MS.gene05351:intron | 45.0% | |
| CATAGCTTCCCAAGAACACT+TGG | + | chr6.3:75393646-75393665 | None:intergenic | 45.0% | |
| CATGTGACAAATAGGCTAGG+AGG | - | chr6.3:75394010-75394029 | MS.gene05351:intron | 45.0% | |
| CCAATTCACCAAAGATAGGC+GGG | + | chr6.3:75393785-75393804 | None:intergenic | 45.0% | |
| CCGACAAAGCAAAGAAGAAC+CGG | - | chr6.3:75393841-75393860 | MS.gene05351:intron | 45.0% | |
| CCGGTTCTTCTTTGCTTTGT+CGG | + | chr6.3:75393844-75393863 | None:intergenic | 45.0% | |
| CGACAAAGCAAAGAAGAACC+GGG | - | chr6.3:75393842-75393861 | MS.gene05351:intron | 45.0% | |
| CGAGAATCTCTCGGATAATC+CGG | + | chr6.3:75393297-75393316 | None:intergenic | 45.0% | |
| CGATTCATCTTAAGGCCTAG+TGG | - | chr6.3:75393321-75393340 | MS.gene05351:CDS | 45.0% | |
| CTAACCCTCAATCATGGTGA+AGG | - | chr6.3:75395705-75395724 | MS.gene05351:intron | 45.0% | |
| GAGAATCTCTCGGATAATCC+GGG | + | chr6.3:75393296-75393315 | None:intergenic | 45.0% | |
| GATAAAACTCTGGTGAGGGA+AGG | + | chr6.3:75394416-75394435 | None:intergenic | 45.0% | |
| GCTCCTCATATGACCTTTGA+CGG | + | chr6.3:75395848-75395867 | None:intergenic | 45.0% | |
| GGATGATGAGGATCATGATG+AGG | - | chr6.3:75395965-75395984 | MS.gene05351:CDS | 45.0% | |
| GGTTTGAGGAGACAAGAAAG+CGG | - | chr6.3:75393745-75393764 | MS.gene05351:intron | 45.0% | |
| GTAACTTGGCTGCTAACTAC+CGG | - | chr6.3:75395655-75395674 | MS.gene05351:intron | 45.0% | |
| GTTGCTGGAGACAAGAAGAA+GGG | - | chr6.3:75395615-75395634 | MS.gene05351:intron | 45.0% | |
| TACCGGATAAGGCTCAACAT+TGG | + | chr6.3:75395937-75395956 | None:intergenic | 45.0% | |
| TACTTAGAAGAGCCCGTATG+CGG | - | chr6.3:75393724-75393743 | MS.gene05351:intron | 45.0% | |
| TAGATGTCTTGCGGCAACTT+TGG | - | chr6.3:75394839-75394858 | MS.gene05351:intron | 45.0% | |
| TCATCATCCTCCTCATCTAC+CGG | + | chr6.3:75395954-75395973 | None:intergenic | 45.0% | |
| TTGATGCAACACTACCCTTC+CGG | + | chr6.3:75395677-75395696 | None:intergenic | 45.0% | |
| TTGTCTCCTCAAACCGCATA+CGG | + | chr6.3:75393740-75393759 | None:intergenic | 45.0% | |
| TTGTGATATCAGCAGCAACG+AGG | + | chr6.3:75394670-75394689 | None:intergenic | 45.0% | |
| ! | GCTATACGGTCTTGGTAACT+TGG | - | chr6.3:75395641-75395660 | MS.gene05351:intron | 45.0% |
| ! | TCCCAATGTTGAGCCTTATC+CGG | - | chr6.3:75395932-75395951 | MS.gene05351:CDS | 45.0% |
| ! | TTGAACAGGAGGAGTATGAC+CGG | - | chr6.3:75395523-75395542 | MS.gene05351:CDS | 45.0% |
| !! | CTCGTCGTCGATTCATCTTA+AGG | - | chr6.3:75393313-75393332 | MS.gene05351:CDS | 45.0% |
| !! | CTTGCCGAGGCTATTTCTAA+TGG | - | chr6.3:75395549-75395568 | MS.gene05351:CDS | 45.0% |
| !! | AAATAATAACAAAATATTTA+AGG | + | chr6.3:75395505-75395524 | None:intergenic | 5.0% |
| AAGGGAGGATGCATTCACAC+TGG | - | chr6.3:75393873-75393892 | MS.gene05351:intron | 50.0% | |
| AAGGTCATATGAGGAGCAGC+TGG | - | chr6.3:75395851-75395870 | MS.gene05351:intron | 50.0% | |
| AATTACCGCGGACAGATGGT+TGG | + | chr6.3:75394758-75394777 | None:intergenic | 50.0% | |
| AGAAAGCGGCCACATTGGAT+TGG | - | chr6.3:75393759-75393778 | MS.gene05351:intron | 50.0% | |
| AGACAAGAAAGCGGCCACAT+TGG | - | chr6.3:75393754-75393773 | MS.gene05351:intron | 50.0% | |
| AGGACCCTTCACCATGATTG+AGG | + | chr6.3:75395713-75395732 | None:intergenic | 50.0% | |
| ATAGGCTAGGAGGTTACGTC+GGG | - | chr6.3:75394020-75394039 | MS.gene05351:intron | 50.0% | |
| CCCGCCTATCTTTGGTGAAT+TGG | - | chr6.3:75393782-75393801 | MS.gene05351:intron | 50.0% | |
| CCTTCATCATGACACGTGAG+CGG | - | chr6.3:75394884-75394903 | MS.gene05351:intron | 50.0% | |
| GATTGCTTCAGCAGCTGGTT+TGG | + | chr6.3:75393439-75393458 | None:intergenic | 50.0% | |
| GCAACAGATGGCAAGTCAAG+CGG | - | chr6.3:75395800-75395819 | MS.gene05351:CDS | 50.0% | |
| GGACCCTTCACCATGATTGA+GGG | + | chr6.3:75395712-75395731 | None:intergenic | 50.0% | |
| GGTAGATGAGGAGGATGATG+AGG | - | chr6.3:75395953-75395972 | MS.gene05351:CDS | 50.0% | |
| TAAAAGCGGCGCACTAGTGT+GGG | + | chr6.3:75395910-75395929 | None:intergenic | 50.0% | |
| TCCTCCTCATCTACCGGATA+AGG | + | chr6.3:75395948-75395967 | None:intergenic | 50.0% | |
| TCTGGTGAGGGAAGGAGTTA+GGG | + | chr6.3:75394408-75394427 | None:intergenic | 50.0% | |
| TGAATAAGCTCCCGCATCTC+TGG | + | chr6.3:75395756-75395775 | None:intergenic | 50.0% | |
| TGTCTCCTCAAACCGCATAC+GGG | + | chr6.3:75393739-75393758 | None:intergenic | 50.0% | |
| TTAAAAGCGGCGCACTAGTG+TGG | + | chr6.3:75395911-75395930 | None:intergenic | 50.0% | |
| TTGGCTGCTAACTACCGGAA+GGG | - | chr6.3:75395660-75395679 | MS.gene05351:intron | 50.0% | |
| ! | CAGAGCTGCTGCACGTTTTT+CGG | - | chr6.3:75393698-75393717 | MS.gene05351:CDS | 50.0% |
| ! | TGAGCCTTATCCGGTAGATG+AGG | - | chr6.3:75395941-75395960 | MS.gene05351:CDS | 50.0% |
| !! | GGTTAAGTATTGGGCGTCTG+AGG | - | chr6.3:75393803-75393822 | MS.gene05351:intron | 50.0% |
| AAATAGCCTCGGCAAGCTGC+CGG | + | chr6.3:75395545-75395564 | None:intergenic | 55.0% | |
| AAGAGCCCGTATGCGGTTTG+AGG | - | chr6.3:75393731-75393750 | MS.gene05351:intron | 55.0% | |
| AATACTGCGACGAGCGTGCT+AGG | - | chr6.3:75394094-75394113 | MS.gene05351:intron | 55.0% | |
| AGCAAAGAAGAACCGGGCGT+CGG | - | chr6.3:75393848-75393867 | MS.gene05351:intron | 55.0% | |
| AGGAGCAGCTGGCACAGTTT+AGG | - | chr6.3:75395862-75395881 | MS.gene05351:intron | 55.0% | |
| ATAGGCGGGCCAATCCAATG+TGG | + | chr6.3:75393771-75393790 | None:intergenic | 55.0% | |
| CCGCTCACGTGTCATGATGA+AGG | + | chr6.3:75394887-75394906 | None:intergenic | 55.0% | |
| CTCCATGCTCAGATCAGACG+CGG | + | chr6.3:75395012-75395031 | None:intergenic | 55.0% | |
| CTCTGGTGAGGGAAGGAGTT+AGG | + | chr6.3:75394409-75394428 | None:intergenic | 55.0% | |
| CTTGGCTGCTAACTACCGGA+AGG | - | chr6.3:75395659-75395678 | MS.gene05351:intron | 55.0% | |
| GCCTTATCCGGTAGATGAGG+AGG | - | chr6.3:75395944-75395963 | MS.gene05351:CDS | 55.0% | |
| GGAGGATGCATTCACACTGG+TGG | - | chr6.3:75393876-75393895 | MS.gene05351:intron | 55.0% | |
| GGTCTGATTGCTTCAGCAGC+TGG | + | chr6.3:75393444-75393463 | None:intergenic | 55.0% | |
| GTTGGGGCCAGACCACAATT+CGG | + | chr6.3:75394235-75394254 | None:intergenic | 55.0% | |
| TAGCACGCTCGTCGCAGTAT+TGG | + | chr6.3:75394095-75394114 | None:intergenic | 55.0% | |
| TGCATCCAACCATCTGTCCG+CGG | - | chr6.3:75394750-75394769 | MS.gene05351:intron | 55.0% | |
| TTTAGGCAAGCCCAGGCTCA+AGG | - | chr6.3:75395879-75395898 | MS.gene05351:intron | 55.0% | |
| !! | AAGAACCGGGCGTCGGAAAA+GGG | - | chr6.3:75393855-75393874 | MS.gene05351:intron | 55.0% |
| !! | GCGCTGGTTTAGGCTCTTTC+AGG | - | chr6.3:75393530-75393549 | MS.gene05351:CDS | 55.0% |
| !! | GCTTCAGCAGCTGGTTTGGA+AGG | + | chr6.3:75393435-75393454 | None:intergenic | 55.0% |
| !! | TGGATTGGCCCGCCTATCTT+TGG | - | chr6.3:75393774-75393793 | MS.gene05351:intron | 55.0% |
| AGCCGCGTCTGATCTGAGCA+TGG | - | chr6.3:75395007-75395026 | MS.gene05351:intron | 60.0% | |
| CGCGTCTGATCTGAGCATGG+AGG | - | chr6.3:75395010-75395029 | MS.gene05351:intron | 60.0% | |
| CTGAGCTGACGCCAGAGATG+CGG | - | chr6.3:75395742-75395761 | MS.gene05351:CDS | 60.0% | |
| GGCACAGTTTAGGCAAGCCC+AGG | - | chr6.3:75395872-75395891 | MS.gene05351:intron | 60.0% | |
| TGAGCTGACGCCAGAGATGC+GGG | - | chr6.3:75395743-75395762 | MS.gene05351:CDS | 60.0% | |
| ! | ATCCTCCCTTTTCCGACGCC+CGG | + | chr6.3:75393863-75393882 | None:intergenic | 60.0% |
| ! | TTGGGCGTCTGAGGCGTTCA+AGG | - | chr6.3:75393812-75393831 | MS.gene05351:intron | 60.0% |
| !! | ACGCTCGTCGCAGTATTGGC+CGG | + | chr6.3:75394091-75394110 | None:intergenic | 60.0% |
| !! | GAAGAACCGGGCGTCGGAAA+AGG | - | chr6.3:75393854-75393873 | MS.gene05351:intron | 60.0% |
| AAGCGGCGCACTAGTGTGGG+AGG | + | chr6.3:75395907-75395926 | None:intergenic | 65.0% | |
| AGCGGCGCACTAGTGTGGGA+GGG | + | chr6.3:75395906-75395925 | None:intergenic | 65.0% | |
| CGCATCTCTGGCGTCAGCTC+AGG | + | chr6.3:75395744-75395763 | None:intergenic | 65.0% | |
| GTATGACCGGCAGCTTGCCG+AGG | - | chr6.3:75395536-75395555 | MS.gene05351:CDS | 65.0% | |
| GTGGGAGGGACCTTGAGCCT+GGG | + | chr6.3:75395892-75395911 | None:intergenic | 65.0% | |
| TGGCGTCAGCTCAGGCTGCT+GGG | + | chr6.3:75395736-75395755 | None:intergenic | 65.0% | |
| TGTGGGAGGGACCTTGAGCC+TGG | + | chr6.3:75395893-75395912 | None:intergenic | 65.0% | |
| ! | CGAGCGTGCTAGGAGTGTGC+AGG | - | chr6.3:75394104-75394123 | MS.gene05351:intron | 65.0% |
| ! | CGGAGAGCACGCTGAGCGTA+TGG | - | chr6.3:75393911-75393930 | MS.gene05351:intron | 65.0% |
| !! | AACCGGGCGTCGGAAAAGGG+AGG | - | chr6.3:75393858-75393877 | MS.gene05351:intron | 65.0% |
| CGTCAGCTCAGGCTGCTGGG+AGG | + | chr6.3:75395733-75395752 | None:intergenic | 70.0% | |
| CTGGCGTCAGCTCAGGCTGC+TGG | + | chr6.3:75395737-75395756 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 75393276 | 75395992 | 75393276 | ID=MS.gene05351 |
| chr6.3 | mRNA | 75393276 | 75395992 | 75393276 | ID=MS.gene05351.t1;Parent=MS.gene05351 |
| chr6.3 | exon | 75395919 | 75395992 | 75395919 | ID=MS.gene05351.t1.exon1;Parent=MS.gene05351.t1 |
| chr6.3 | CDS | 75395919 | 75395992 | 75395919 | ID=cds.MS.gene05351.t1;Parent=MS.gene05351.t1 |
| chr6.3 | exon | 75395717 | 75395843 | 75395717 | ID=MS.gene05351.t1.exon2;Parent=MS.gene05351.t1 |
| chr6.3 | CDS | 75395717 | 75395843 | 75395717 | ID=cds.MS.gene05351.t1;Parent=MS.gene05351.t1 |
| chr6.3 | exon | 75395336 | 75395626 | 75395336 | ID=MS.gene05351.t1.exon3;Parent=MS.gene05351.t1 |
| chr6.3 | CDS | 75395336 | 75395626 | 75395336 | ID=cds.MS.gene05351.t1;Parent=MS.gene05351.t1 |
| chr6.3 | exon | 75395143 | 75395244 | 75395143 | ID=MS.gene05351.t1.exon4;Parent=MS.gene05351.t1 |
| chr6.3 | CDS | 75395143 | 75395244 | 75395143 | ID=cds.MS.gene05351.t1;Parent=MS.gene05351.t1 |
| chr6.3 | exon | 75393276 | 75393737 | 75393276 | ID=MS.gene05351.t1.exon5;Parent=MS.gene05351.t1 |
| chr6.3 | CDS | 75393276 | 75393737 | 75393276 | ID=cds.MS.gene05351.t1;Parent=MS.gene05351.t1 |
| Gene Sequence |
| Protein sequence |