AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05351


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05351.t1 MTR_0029s0140 83.333 144 24 0 197 340 241 384 2.94e-71 227
MS.gene05351.t1 MTR_0029s0140 78.788 66 14 0 1 66 174 239 9.38e-33 126
MS.gene05351.t1 MTR_2g102860 83.453 139 23 0 205 343 13 151 1.31e-70 218
MS.gene05351.t1 MTR_4g017750 83.217 143 20 1 198 340 110 248 2.25e-69 218
MS.gene05351.t1 MTR_5g080310 79.866 149 26 1 199 347 122 266 4.58e-69 218
MS.gene05351.t1 MTR_2g020090 68.790 157 48 1 184 340 49 204 5.83e-69 216
MS.gene05351.t1 MTR_3g058800 73.239 142 37 1 199 340 10 150 2.80e-67 209
MS.gene05351.t1 MTR_6g463490 83.761 117 19 0 227 343 3 119 2.39e-65 203
MS.gene05351.t1 MTR_1g023240 74.051 158 35 1 180 337 17 168 4.95e-64 204
MS.gene05351.t1 MTR_4g023110 73.134 134 35 1 197 330 7 139 7.72e-62 194
MS.gene05351.t1 MTR_8g027455 54.140 157 63 4 197 347 23 176 2.62e-43 155
MS.gene05351.t1 MTR_1g077650 66.346 104 34 1 198 301 46 148 1.24e-40 141
MS.gene05351.t1 MTR_7g035425 38.182 165 87 5 5 157 179 340 1.63e-23 99.8
MS.gene05351.t1 MTR_7g037680 29.858 211 116 5 110 319 17 196 6.85e-21 90.9
MS.gene05351.t1 MTR_5g053700 82.000 50 5 1 291 340 1 46 3.13e-19 80.9
MS.gene05351.t1 MTR_2g077640 28.837 215 113 6 67 279 34 210 1.09e-17 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 110 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGCTGGTTTAGGCTCTTTC+AGG 0.183435 6.3:-75395716 MS.gene05351:intron
CATGATTGAGGGTTAGTCTT+AGG 0.184506 6.3:+75393548 None:intergenic
TGTGGGAGGGACCTTGAGCC+TGG 0.232485 6.3:+75393356 None:intergenic
CTGGCGTCAGCTCAGGCTGC+TGG 0.280344 6.3:+75393512 None:intergenic
CCCGCCTATCTTTGGTGAAT+TGG 0.291684 6.3:-75395464 MS.gene05351:CDS
ATAACTGCTATCATCACTTT+TGG 0.303053 6.3:-75395774 MS.gene05351:CDS
GATTGCTTCAGCAGCTGGTT+TGG 0.317185 6.3:+75395810 None:intergenic
TGGTGAATTGGTTAAGTATT+GGG 0.326447 6.3:-75395452 MS.gene05351:CDS
TAATGCAGACCAAGTGTTCT+TGG 0.346146 6.3:-75395612 MS.gene05351:intron
CCGGTTCTTCTTTGCTTTGT+CGG 0.346522 6.3:+75395405 None:intergenic
CTTGCCGAGGCTATTTCTAA+TGG 0.350981 6.3:-75393697 MS.gene05351:CDS
TGGATTGGCCCGCCTATCTT+TGG 0.360603 6.3:-75395472 MS.gene05351:CDS
GGTCTGATTGCTTCAGCAGC+TGG 0.376829 6.3:+75395805 None:intergenic
CGCATCTCTGGCGTCAGCTC+AGG 0.380128 6.3:+75393505 None:intergenic
CGAGAATCTCTCGGATAATC+CGG 0.382857 6.3:+75395952 None:intergenic
ATGATTGAGGGTTAGTCTTA+GGG 0.390145 6.3:+75393549 None:intergenic
TTGTCTCCTCAAACCGCATA+CGG 0.400455 6.3:+75395509 None:intergenic
AGGAGCAGCTGGCACAGTTT+AGG 0.406187 6.3:-75393384 MS.gene05351:CDS
GAAGAACCGGGCGTCGGAAA+AGG 0.413034 6.3:-75395392 MS.gene05351:CDS
GCTATACGGTCTTGGTAACT+TGG 0.413255 6.3:-75393605 MS.gene05351:CDS
TGAATAAGCTCCCGCATCTC+TGG 0.423368 6.3:+75393493 None:intergenic
CCGACAAAGCAAAGAAGAAC+CGG 0.424122 6.3:-75395405 MS.gene05351:CDS
TTGGTGAATTGGTTAAGTAT+TGG 0.427319 6.3:-75395453 MS.gene05351:CDS
AATGCAGACCAAGTGTTCTT+GGG 0.435174 6.3:-75395611 MS.gene05351:intron
TTGCCGAGGCTATTTCTAAT+GGG 0.436783 6.3:-75393696 MS.gene05351:CDS
TGAGCTGACGCCAGAGATGC+GGG 0.441007 6.3:-75393503 MS.gene05351:CDS
TCCTCCTCATCTACCGGATA+AGG 0.441120 6.3:+75393301 None:intergenic
CTCGTCGTCGATTCATCTTA+AGG 0.445948 6.3:-75395933 MS.gene05351:CDS
TGGCGTCAGCTCAGGCTGCT+GGG 0.447507 6.3:+75393513 None:intergenic
AAGAAGAAGGGAAAGCTATA+CGG 0.450481 6.3:-75393619 MS.gene05351:CDS
ACCGGATAAGGCTCAACATT+GGG 0.453953 6.3:+75393313 None:intergenic
TTAATTGCTCTTGCGTCAAA+CGG 0.464925 6.3:+75393470 None:intergenic
AGGACCCTTCACCATGATTG+AGG 0.467659 6.3:+75393536 None:intergenic
TTAACCAATTCACCAAAGAT+AGG 0.468585 6.3:+75395460 None:intergenic
AAGAGCCCGTATGCGGTTTG+AGG 0.473397 6.3:-75395515 MS.gene05351:CDS
AAGGGAAAGCTATACGGTCT+TGG 0.480141 6.3:-75393613 MS.gene05351:CDS
GCTCCTCATATGACCTTTGA+CGG 0.484551 6.3:+75393401 None:intergenic
TAGCACGCTCGTCGCAGTAT+TGG 0.486252 6.3:+75395154 None:intergenic
TTGATGCAACACTACCCTTC+CGG 0.489648 6.3:+75393572 None:intergenic
CGGAGAGCACGCTGAGCGTA+TGG 0.490492 6.3:-75395335 MS.gene05351:intron
CATAGCTTCCCAAGAACACT+TGG 0.490648 6.3:+75395603 None:intergenic
TCCCAATGTTGAGCCTTATC+CGG 0.490951 6.3:-75393314 MS.gene05351:CDS
TCGTGAAGCTCGTTAATAAA+CGG 0.493110 6.3:+75395201 None:intergenic
ATGATAGCAGTTATGAATGA+TGG 0.496630 6.3:+75395783 None:intergenic
TTGGGCGTCTGAGGCGTTCA+AGG 0.500299 6.3:-75395434 MS.gene05351:CDS
AAGAACCGGGCGTCGGAAAA+GGG 0.501037 6.3:-75395391 MS.gene05351:CDS
ATTCTTTGACCTTCAACACT+TGG 0.510375 6.3:-75393660 MS.gene05351:CDS
AAGATTTGCTTAACCGTCAA+AGG 0.511841 6.3:-75393414 MS.gene05351:CDS
AATACTGCGACGAGCGTGCT+AGG 0.515851 6.3:-75395152 MS.gene05351:CDS
GCTTCAGCAGCTGGTTTGGA+AGG 0.518909 6.3:+75395814 None:intergenic
GGCACAGTTTAGGCAAGCCC+AGG 0.523133 6.3:-75393374 MS.gene05351:CDS
AGACAAGAAAGCGGCCACAT+TGG 0.524562 6.3:-75395492 MS.gene05351:CDS
GTGGGAGGGACCTTGAGCCT+GGG 0.524940 6.3:+75393357 None:intergenic
AGAAAGCGGCCACATTGGAT+TGG 0.531391 6.3:-75395487 MS.gene05351:CDS
GGACCCTTCACCATGATTGA+GGG 0.531656 6.3:+75393537 None:intergenic
TCATCATCCTCCTCATCTAC+CGG 0.536805 6.3:+75393295 None:intergenic
TAACCGTCAAAGGTCATATG+AGG 0.541572 6.3:-75393404 MS.gene05351:CDS
CCAATTCACCAAAGATAGGC+GGG 0.544604 6.3:+75395464 None:intergenic
TTAAAAGCGGCGCACTAGTG+TGG 0.545514 6.3:+75393338 None:intergenic
AAGGTCATATGAGGAGCAGC+TGG 0.546890 6.3:-75393395 MS.gene05351:CDS
TAAAAGCGGCGCACTAGTGT+GGG 0.551339 6.3:+75393339 None:intergenic
CTGAGCTGACGCCAGAGATG+CGG 0.553348 6.3:-75393504 MS.gene05351:CDS
AAATAGCCTCGGCAAGCTGC+CGG 0.555959 6.3:+75393704 None:intergenic
CGAGCGTGCTAGGAGTGTGC+AGG 0.557294 6.3:-75395142 MS.gene05351:intron
AGTTGCTGGAGACAAGAAGA+AGG 0.557374 6.3:-75393632 MS.gene05351:CDS
TACCGGATAAGGCTCAACAT+TGG 0.558734 6.3:+75393312 None:intergenic
ATAGGCTAGGAGGTTACGTC+GGG 0.559517 6.3:-75395226 MS.gene05351:intron
TTTAGGCAAGCCCAGGCTCA+AGG 0.561956 6.3:-75393367 MS.gene05351:CDS
CTAAGACTAACCCTCAATCA+TGG 0.562434 6.3:-75393547 MS.gene05351:CDS
GTAACTTGGCTGCTAACTAC+CGG 0.570124 6.3:-75393591 MS.gene05351:CDS
ACGCTCGTCGCAGTATTGGC+CGG 0.570260 6.3:+75395158 None:intergenic
TGTCTCCTCAAACCGCATAC+GGG 0.571839 6.3:+75395510 None:intergenic
GGTTAAGTATTGGGCGTCTG+AGG 0.575914 6.3:-75395443 MS.gene05351:CDS
AGCAAAGAAGAACCGGGCGT+CGG 0.582886 6.3:-75395398 MS.gene05351:CDS
TTGAACAGGAGGAGTATGAC+CGG 0.586858 6.3:-75393723 MS.gene05351:intron
CTAACCCTCAATCATGGTGA+AGG 0.587704 6.3:-75393541 MS.gene05351:CDS
TGAACTTACGAGTTTCCACT+AGG 0.589440 6.3:+75395910 None:intergenic
GGATGATGAGGATCATGATG+AGG 0.590861 6.3:-75393281 MS.gene05351:CDS
AGAGCAATTAACGCAACAGA+TGG 0.592019 6.3:-75393458 MS.gene05351:CDS
GAGAATCTCTCGGATAATCC+GGG 0.595824 6.3:+75395953 None:intergenic
AAGCGGCGCACTAGTGTGGG+AGG 0.600468 6.3:+75393342 None:intergenic
GTATGACCGGCAGCTTGCCG+AGG 0.601524 6.3:-75393710 MS.gene05351:CDS
CGATTCATCTTAAGGCCTAG+TGG 0.601629 6.3:-75395925 MS.gene05351:CDS
CGACAAAGCAAAGAAGAACC+GGG 0.601764 6.3:-75395404 MS.gene05351:CDS
TGATAGCAGTTATGAATGAT+GGG 0.610829 6.3:+75395784 None:intergenic
TACTTAGAAGAGCCCGTATG+CGG 0.616606 6.3:-75395522 MS.gene05351:CDS
GATGTTTAATGATGTTTACC+CGG 0.618633 6.3:-75395971 MS.gene05351:CDS
GCCTTATCCGGTAGATGAGG+AGG 0.618778 6.3:-75393302 MS.gene05351:CDS
ACCAATTCACCAAAGATAGG+CGG 0.624368 6.3:+75395463 None:intergenic
CTTGGCTGCTAACTACCGGA+AGG 0.625442 6.3:-75393587 MS.gene05351:CDS
GTTGCTGGAGACAAGAAGAA+GGG 0.632114 6.3:-75393631 MS.gene05351:CDS
AATAGGCTAGGAGGTTACGT+CGG 0.632889 6.3:-75395227 MS.gene05351:intron
AATCGACGACGAGAATCTCT+CGG 0.634346 6.3:+75395943 None:intergenic
TAACCCTCAATCATGGTGAA+GGG 0.637969 6.3:-75393540 MS.gene05351:CDS
GGTAGATGAGGAGGATGATG+AGG 0.638477 6.3:-75393293 MS.gene05351:CDS
CATGTGACAAATAGGCTAGG+AGG 0.639349 6.3:-75395236 MS.gene05351:intron
TGAGCCTTATCCGGTAGATG+AGG 0.639385 6.3:-75393305 MS.gene05351:CDS
AGACCCATTAGAAATAGCCT+CGG 0.644902 6.3:+75393693 None:intergenic
ACTGGTGGTTGCTTAAGCAA+CGG 0.650281 6.3:-75395355 MS.gene05351:CDS
CGTCAGCTCAGGCTGCTGGG+AGG 0.651312 6.3:+75393516 None:intergenic
TTGGAAGACATATGGTGATG+TGG 0.652180 6.3:-75395755 MS.gene05351:CDS
TCAACATTGGGACTTAAAAG+CGG 0.654070 6.3:+75393325 None:intergenic
AGCGGCGCACTAGTGTGGGA+GGG 0.654626 6.3:+75393343 None:intergenic
TTGGCTGCTAACTACCGGAA+GGG 0.659168 6.3:-75393586 MS.gene05351:CDS
GGAGGATGCATTCACACTGG+TGG 0.660778 6.3:-75395370 MS.gene05351:CDS
GCAACAGATGGCAAGTCAAG+CGG 0.662263 6.3:-75393446 MS.gene05351:CDS
AACCGGGCGTCGGAAAAGGG+AGG 0.663571 6.3:-75395388 MS.gene05351:CDS
AAGGGAGGATGCATTCACAC+TGG 0.674246 6.3:-75395373 MS.gene05351:CDS
ATAGGCGGGCCAATCCAATG+TGG 0.757504 6.3:+75395478 None:intergenic
GGTTTGAGGAGACAAGAAAG+CGG 0.763875 6.3:-75395501 MS.gene05351:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGATAATAAACAAAATA+AGG + chr6.3:75395416-75395435 None:intergenic 10.0%
!! ACAATCAAAATTAAATGATA+TGG + chr6.3:75393965-75393984 None:intergenic 15.0%
!!! AAAATTGAGGATTTTATAAA+AGG - chr6.3:75394329-75394348 MS.gene05351:intron 15.0%
!!! TATTTTGTTATTATTTGAAC+AGG - chr6.3:75395509-75395528 MS.gene05351:CDS 15.0%
!! CAGTAAAAATGAAATTGATA+TGG + chr6.3:75394580-75394599 None:intergenic 20.0%
!! TATAAAGATTAAGAACACAT+TGG + chr6.3:75395243-75395262 None:intergenic 20.0%
!! TGAAAAATTTGAGAAAAATC+AGG - chr6.3:75394489-75394508 MS.gene05351:intron 20.0%
!!! AAGCCTTATAATATCTATTT+AGG + chr6.3:75394943-75394962 None:intergenic 20.0%
!!! ATTTTTTTTAATCCGAATTG+TGG - chr6.3:75394220-75394239 MS.gene05351:intron 20.0%
!!! TTTTATTTCATGTGACAAAT+AGG - chr6.3:75394002-75394021 MS.gene05351:intron 20.0%
! AAAATATTTAAGGACAGAAC+TGG + chr6.3:75395495-75395514 None:intergenic 25.0%
! AAGGAAACTAATCATAAGAA+TGG + chr6.3:75395397-75395416 None:intergenic 25.0%
! AATTTCAGTTAAGCAAAAGT+TGG + chr6.3:75394253-75394272 None:intergenic 25.0%
! ACAAATTCATAAGCAATAAC+AGG + chr6.3:75394815-75394834 None:intergenic 25.0%
! ATTTCAGTTAAGCAAAAGTT+GGG + chr6.3:75394252-75394271 None:intergenic 25.0%
! CAAATTCATAAGCAATAACA+GGG + chr6.3:75394814-75394833 None:intergenic 25.0%
! GAAAACTATATAGAATCAAG+TGG + chr6.3:75395154-75395173 None:intergenic 25.0%
! TGGCCTAAATAGATATTATA+AGG - chr6.3:75394937-75394956 MS.gene05351:intron 25.0%
!! ACTTTTGCTTAACTGAAATT+TGG - chr6.3:75394253-75394272 MS.gene05351:intron 25.0%
!! TAGAATTTAGAACTTATCAC+AGG - chr6.3:75395208-75395227 MS.gene05351:CDS 25.0%
!! TGTTTCTGTCAAAAAAATTG+AGG - chr6.3:75394316-75394335 MS.gene05351:intron 25.0%
!!! GCTTTTTGAAAGAATAGAAA+AGG - chr6.3:75394538-75394557 MS.gene05351:intron 25.0%
!!! TTTGTTATTATTTGAACAGG+AGG - chr6.3:75395512-75395531 MS.gene05351:CDS 25.0%
AAAACTGAGTACTAAGGTAA+GGG + chr6.3:75394972-75394991 None:intergenic 30.0%
AAAGTCGATTAAAATTACCG+CGG + chr6.3:75394770-75394789 None:intergenic 30.0%
AAGACTCATAAGTCAACATT+AGG + chr6.3:75394725-75394744 None:intergenic 30.0%
AATAACAGAGAAACAGTGTA+AGG + chr6.3:75395465-75395484 None:intergenic 30.0%
ATGATAGCAGTTATGAATGA+TGG + chr6.3:75393466-75393485 None:intergenic 30.0%
CATTACATAGCTCAATTCTT+CGG + chr6.3:75394646-75394665 None:intergenic 30.0%
TGAGACTTATGATAAAACTC+TGG + chr6.3:75394426-75394445 None:intergenic 30.0%
TGATAGCAGTTATGAATGAT+GGG + chr6.3:75393465-75393484 None:intergenic 30.0%
TGGTGAATTGGTTAAGTATT+GGG - chr6.3:75393794-75393813 MS.gene05351:intron 30.0%
TGTGAATTATGATCGATTGT+TGG - chr6.3:75394376-75394395 MS.gene05351:intron 30.0%
TGTTGTTGAATTTCTCTGAT+TGG - chr6.3:75394598-75394617 MS.gene05351:intron 30.0%
TTAACCAATTCACCAAAGAT+AGG + chr6.3:75393789-75393808 None:intergenic 30.0%
TTATGATAAAACTCTGGTGA+GGG + chr6.3:75394420-75394439 None:intergenic 30.0%
TTGGTGAATTGGTTAAGTAT+TGG - chr6.3:75393793-75393812 MS.gene05351:intron 30.0%
TTTCAGTTAAGCAAAAGTTG+GGG + chr6.3:75394251-75394270 None:intergenic 30.0%
TTTGTGTTATAGATGTCTTG+CGG - chr6.3:75394830-75394849 MS.gene05351:intron 30.0%
! ATAACTGCTATCATCACTTT+TGG - chr6.3:75393472-75393491 MS.gene05351:CDS 30.0%
! CTCTTGTTCTAGATATGATT+TGG - chr6.3:75394282-75394301 MS.gene05351:intron 30.0%
! TTTTCTTGCAATCACATAAC+AGG + chr6.3:75395331-75395350 None:intergenic 30.0%
!!! AACTTTTTTCCAAGTGTTGA+AGG + chr6.3:75395598-75395617 None:intergenic 30.0%
AACACTTGGAAAAAAGTTGC+TGG - chr6.3:75395600-75395619 MS.gene05351:CDS 35.0%
AAGAAGAAGGGAAAGCTATA+CGG - chr6.3:75395627-75395646 MS.gene05351:intron 35.0%
AAGATTAAGAACACATTGGC+TGG + chr6.3:75395239-75395258 None:intergenic 35.0%
AATGACAAACAAGACAGAAC+TGG + chr6.3:75394194-75394213 None:intergenic 35.0%
ATTCTTTGACCTTCAACACT+TGG - chr6.3:75395586-75395605 MS.gene05351:CDS 35.0%
CAAAACTGAGTACTAAGGTA+AGG + chr6.3:75394973-75394992 None:intergenic 35.0%
CGAAGAATTGAGCTATGTAA+TGG - chr6.3:75394644-75394663 MS.gene05351:intron 35.0%
CTAGCACACATAATTATCTC+AGG + chr6.3:75394466-75394485 None:intergenic 35.0%
CTTATGATAAAACTCTGGTG+AGG + chr6.3:75394421-75394440 None:intergenic 35.0%
GAAACGCACAAAAATAAGTC+CGG - chr6.3:75394069-75394088 MS.gene05351:intron 35.0%
GGCAAGTTGTAATTGCTTAT+AGG + chr6.3:75395305-75395324 None:intergenic 35.0%
TCAACATTGGGACTTAAAAG+CGG + chr6.3:75395924-75395943 None:intergenic 35.0%
TCGTGAAGCTCGTTAATAAA+CGG + chr6.3:75394048-75394067 None:intergenic 35.0%
TTAATTGCTCTTGCGTCAAA+CGG + chr6.3:75395779-75395798 None:intergenic 35.0%
TTGCAATCACATAACAGGTT+TGG + chr6.3:75395326-75395345 None:intergenic 35.0%
TTTCATGTGACAAATAGGCT+AGG - chr6.3:75394007-75394026 MS.gene05351:intron 35.0%
! AAGATTTGCTTAACCGTCAA+AGG - chr6.3:75395832-75395851 MS.gene05351:intron 35.0%
! ATGATAATGAAAAAGAGCGC+TGG - chr6.3:75393514-75393533 MS.gene05351:CDS 35.0%
! TACCTTAGTACTCAGTTTTG+TGG - chr6.3:75394973-75394992 MS.gene05351:intron 35.0%
! TTTTAATCCGAATTGTGGTC+TGG - chr6.3:75394225-75394244 MS.gene05351:intron 35.0%
!! ACCTTAGTACTCAGTTTTGT+GGG - chr6.3:75394974-75394993 MS.gene05351:intron 35.0%
!! ATGATTGAGGGTTAGTCTTA+GGG + chr6.3:75395700-75395719 None:intergenic 35.0%
!! CATCACTTTTGGAAGACATA+TGG - chr6.3:75393483-75393502 MS.gene05351:CDS 35.0%
!! CGACTTTGTTGATTCTTACA+AGG - chr6.3:75394783-75394802 MS.gene05351:intron 35.0%
!! GTTCTGTCTTGTTTGTCATT+TGG - chr6.3:75394194-75394213 MS.gene05351:intron 35.0%
!!! GCACTATTTTTGTTGCAGTT+TGG - chr6.3:75394166-75394185 MS.gene05351:intron 35.0%
AATGCAGACCAAGTGTTCTT+GGG - chr6.3:75393635-75393654 MS.gene05351:CDS 40.0%
ACCAATTCACCAAAGATAGG+CGG + chr6.3:75393786-75393805 None:intergenic 40.0%
AGACCCATTAGAAATAGCCT+CGG + chr6.3:75395556-75395575 None:intergenic 40.0%
AGAGCAATTAACGCAACAGA+TGG - chr6.3:75395788-75395807 MS.gene05351:CDS 40.0%
ATCTCAGGAGTTGCATCTTT+AGG + chr6.3:75394451-75394470 None:intergenic 40.0%
ATTTAAGGACAGAACTGGCA+AGG + chr6.3:75395490-75395509 None:intergenic 40.0%
CTAAGACTAACCCTCAATCA+TGG - chr6.3:75395699-75395718 MS.gene05351:intron 40.0%
GAAGGTGATGAATGATACAG+AGG + chr6.3:75394869-75394888 None:intergenic 40.0%
TAACCCTCAATCATGGTGAA+GGG - chr6.3:75395706-75395725 MS.gene05351:intron 40.0%
TAACCGTCAAAGGTCATATG+AGG - chr6.3:75395842-75395861 MS.gene05351:intron 40.0%
TAATGCAGACCAAGTGTTCT+TGG - chr6.3:75393634-75393653 MS.gene05351:CDS 40.0%
TCCCACAAAACTGAGTACTA+AGG + chr6.3:75394978-75394997 None:intergenic 40.0%
TCTATTTAGGCCATGTCTCT+AGG + chr6.3:75394930-75394949 None:intergenic 40.0%
TGAACTTACGAGTTTCCACT+AGG + chr6.3:75393339-75393358 None:intergenic 40.0%
TGTCTCTAGGCAATGAAGAA+CGG + chr6.3:75394917-75394936 None:intergenic 40.0%
TTAAAATTACCGCGGACAGA+TGG + chr6.3:75394762-75394781 None:intergenic 40.0%
TTCTTCATTGCCTAGAGACA+TGG - chr6.3:75394917-75394936 MS.gene05351:intron 40.0%
! CTTGTCGTATCTCTCAGTTT+TGG - chr6.3:75394131-75394150 MS.gene05351:intron 40.0%
! TTGGAAGACATATGGTGATG+TGG - chr6.3:75393491-75393510 MS.gene05351:CDS 40.0%
!! ATGAAAAAGAGCGCTGGTTT+AGG - chr6.3:75393520-75393539 MS.gene05351:CDS 40.0%
!! CATGATTGAGGGTTAGTCTT+AGG + chr6.3:75395701-75395720 None:intergenic 40.0%
!! TTGCCGAGGCTATTTCTAAT+GGG - chr6.3:75395550-75395569 MS.gene05351:CDS 40.0%
AAGGGAAAGCTATACGGTCT+TGG - chr6.3:75395633-75395652 MS.gene05351:intron 45.0%
AATAGGCTAGGAGGTTACGT+CGG - chr6.3:75394019-75394038 MS.gene05351:intron 45.0%
AATCGACGACGAGAATCTCT+CGG + chr6.3:75393306-75393325 None:intergenic 45.0%
ACCGGATAAGGCTCAACATT+GGG + chr6.3:75395936-75395955 None:intergenic 45.0%
ACTGGTGGTTGCTTAAGCAA+CGG - chr6.3:75393891-75393910 MS.gene05351:intron 45.0%
AGTTGCTGGAGACAAGAAGA+AGG - chr6.3:75395614-75395633 MS.gene05351:intron 45.0%
CATAGCTTCCCAAGAACACT+TGG + chr6.3:75393646-75393665 None:intergenic 45.0%
CATGTGACAAATAGGCTAGG+AGG - chr6.3:75394010-75394029 MS.gene05351:intron 45.0%
CCAATTCACCAAAGATAGGC+GGG + chr6.3:75393785-75393804 None:intergenic 45.0%
CCGACAAAGCAAAGAAGAAC+CGG - chr6.3:75393841-75393860 MS.gene05351:intron 45.0%
CCGGTTCTTCTTTGCTTTGT+CGG + chr6.3:75393844-75393863 None:intergenic 45.0%
CGACAAAGCAAAGAAGAACC+GGG - chr6.3:75393842-75393861 MS.gene05351:intron 45.0%
CGAGAATCTCTCGGATAATC+CGG + chr6.3:75393297-75393316 None:intergenic 45.0%
CGATTCATCTTAAGGCCTAG+TGG - chr6.3:75393321-75393340 MS.gene05351:CDS 45.0%
CTAACCCTCAATCATGGTGA+AGG - chr6.3:75395705-75395724 MS.gene05351:intron 45.0%
GAGAATCTCTCGGATAATCC+GGG + chr6.3:75393296-75393315 None:intergenic 45.0%
GATAAAACTCTGGTGAGGGA+AGG + chr6.3:75394416-75394435 None:intergenic 45.0%
GCTCCTCATATGACCTTTGA+CGG + chr6.3:75395848-75395867 None:intergenic 45.0%
GGATGATGAGGATCATGATG+AGG - chr6.3:75395965-75395984 MS.gene05351:CDS 45.0%
GGTTTGAGGAGACAAGAAAG+CGG - chr6.3:75393745-75393764 MS.gene05351:intron 45.0%
GTAACTTGGCTGCTAACTAC+CGG - chr6.3:75395655-75395674 MS.gene05351:intron 45.0%
GTTGCTGGAGACAAGAAGAA+GGG - chr6.3:75395615-75395634 MS.gene05351:intron 45.0%
TACCGGATAAGGCTCAACAT+TGG + chr6.3:75395937-75395956 None:intergenic 45.0%
TACTTAGAAGAGCCCGTATG+CGG - chr6.3:75393724-75393743 MS.gene05351:intron 45.0%
TAGATGTCTTGCGGCAACTT+TGG - chr6.3:75394839-75394858 MS.gene05351:intron 45.0%
TCATCATCCTCCTCATCTAC+CGG + chr6.3:75395954-75395973 None:intergenic 45.0%
TTGATGCAACACTACCCTTC+CGG + chr6.3:75395677-75395696 None:intergenic 45.0%
TTGTCTCCTCAAACCGCATA+CGG + chr6.3:75393740-75393759 None:intergenic 45.0%
TTGTGATATCAGCAGCAACG+AGG + chr6.3:75394670-75394689 None:intergenic 45.0%
! GCTATACGGTCTTGGTAACT+TGG - chr6.3:75395641-75395660 MS.gene05351:intron 45.0%
! TCCCAATGTTGAGCCTTATC+CGG - chr6.3:75395932-75395951 MS.gene05351:CDS 45.0%
! TTGAACAGGAGGAGTATGAC+CGG - chr6.3:75395523-75395542 MS.gene05351:CDS 45.0%
!! CTCGTCGTCGATTCATCTTA+AGG - chr6.3:75393313-75393332 MS.gene05351:CDS 45.0%
!! CTTGCCGAGGCTATTTCTAA+TGG - chr6.3:75395549-75395568 MS.gene05351:CDS 45.0%
!! AAATAATAACAAAATATTTA+AGG + chr6.3:75395505-75395524 None:intergenic 5.0%
AAGGGAGGATGCATTCACAC+TGG - chr6.3:75393873-75393892 MS.gene05351:intron 50.0%
AAGGTCATATGAGGAGCAGC+TGG - chr6.3:75395851-75395870 MS.gene05351:intron 50.0%
AATTACCGCGGACAGATGGT+TGG + chr6.3:75394758-75394777 None:intergenic 50.0%
AGAAAGCGGCCACATTGGAT+TGG - chr6.3:75393759-75393778 MS.gene05351:intron 50.0%
AGACAAGAAAGCGGCCACAT+TGG - chr6.3:75393754-75393773 MS.gene05351:intron 50.0%
AGGACCCTTCACCATGATTG+AGG + chr6.3:75395713-75395732 None:intergenic 50.0%
ATAGGCTAGGAGGTTACGTC+GGG - chr6.3:75394020-75394039 MS.gene05351:intron 50.0%
CCCGCCTATCTTTGGTGAAT+TGG - chr6.3:75393782-75393801 MS.gene05351:intron 50.0%
CCTTCATCATGACACGTGAG+CGG - chr6.3:75394884-75394903 MS.gene05351:intron 50.0%
GATTGCTTCAGCAGCTGGTT+TGG + chr6.3:75393439-75393458 None:intergenic 50.0%
GCAACAGATGGCAAGTCAAG+CGG - chr6.3:75395800-75395819 MS.gene05351:CDS 50.0%
GGACCCTTCACCATGATTGA+GGG + chr6.3:75395712-75395731 None:intergenic 50.0%
GGTAGATGAGGAGGATGATG+AGG - chr6.3:75395953-75395972 MS.gene05351:CDS 50.0%
TAAAAGCGGCGCACTAGTGT+GGG + chr6.3:75395910-75395929 None:intergenic 50.0%
TCCTCCTCATCTACCGGATA+AGG + chr6.3:75395948-75395967 None:intergenic 50.0%
TCTGGTGAGGGAAGGAGTTA+GGG + chr6.3:75394408-75394427 None:intergenic 50.0%
TGAATAAGCTCCCGCATCTC+TGG + chr6.3:75395756-75395775 None:intergenic 50.0%
TGTCTCCTCAAACCGCATAC+GGG + chr6.3:75393739-75393758 None:intergenic 50.0%
TTAAAAGCGGCGCACTAGTG+TGG + chr6.3:75395911-75395930 None:intergenic 50.0%
TTGGCTGCTAACTACCGGAA+GGG - chr6.3:75395660-75395679 MS.gene05351:intron 50.0%
! CAGAGCTGCTGCACGTTTTT+CGG - chr6.3:75393698-75393717 MS.gene05351:CDS 50.0%
! TGAGCCTTATCCGGTAGATG+AGG - chr6.3:75395941-75395960 MS.gene05351:CDS 50.0%
!! GGTTAAGTATTGGGCGTCTG+AGG - chr6.3:75393803-75393822 MS.gene05351:intron 50.0%
AAATAGCCTCGGCAAGCTGC+CGG + chr6.3:75395545-75395564 None:intergenic 55.0%
AAGAGCCCGTATGCGGTTTG+AGG - chr6.3:75393731-75393750 MS.gene05351:intron 55.0%
AATACTGCGACGAGCGTGCT+AGG - chr6.3:75394094-75394113 MS.gene05351:intron 55.0%
AGCAAAGAAGAACCGGGCGT+CGG - chr6.3:75393848-75393867 MS.gene05351:intron 55.0%
AGGAGCAGCTGGCACAGTTT+AGG - chr6.3:75395862-75395881 MS.gene05351:intron 55.0%
ATAGGCGGGCCAATCCAATG+TGG + chr6.3:75393771-75393790 None:intergenic 55.0%
CCGCTCACGTGTCATGATGA+AGG + chr6.3:75394887-75394906 None:intergenic 55.0%
CTCCATGCTCAGATCAGACG+CGG + chr6.3:75395012-75395031 None:intergenic 55.0%
CTCTGGTGAGGGAAGGAGTT+AGG + chr6.3:75394409-75394428 None:intergenic 55.0%
CTTGGCTGCTAACTACCGGA+AGG - chr6.3:75395659-75395678 MS.gene05351:intron 55.0%
GCCTTATCCGGTAGATGAGG+AGG - chr6.3:75395944-75395963 MS.gene05351:CDS 55.0%
GGAGGATGCATTCACACTGG+TGG - chr6.3:75393876-75393895 MS.gene05351:intron 55.0%
GGTCTGATTGCTTCAGCAGC+TGG + chr6.3:75393444-75393463 None:intergenic 55.0%
GTTGGGGCCAGACCACAATT+CGG + chr6.3:75394235-75394254 None:intergenic 55.0%
TAGCACGCTCGTCGCAGTAT+TGG + chr6.3:75394095-75394114 None:intergenic 55.0%
TGCATCCAACCATCTGTCCG+CGG - chr6.3:75394750-75394769 MS.gene05351:intron 55.0%
TTTAGGCAAGCCCAGGCTCA+AGG - chr6.3:75395879-75395898 MS.gene05351:intron 55.0%
!! AAGAACCGGGCGTCGGAAAA+GGG - chr6.3:75393855-75393874 MS.gene05351:intron 55.0%
!! GCGCTGGTTTAGGCTCTTTC+AGG - chr6.3:75393530-75393549 MS.gene05351:CDS 55.0%
!! GCTTCAGCAGCTGGTTTGGA+AGG + chr6.3:75393435-75393454 None:intergenic 55.0%
!! TGGATTGGCCCGCCTATCTT+TGG - chr6.3:75393774-75393793 MS.gene05351:intron 55.0%
AGCCGCGTCTGATCTGAGCA+TGG - chr6.3:75395007-75395026 MS.gene05351:intron 60.0%
CGCGTCTGATCTGAGCATGG+AGG - chr6.3:75395010-75395029 MS.gene05351:intron 60.0%
CTGAGCTGACGCCAGAGATG+CGG - chr6.3:75395742-75395761 MS.gene05351:CDS 60.0%
GGCACAGTTTAGGCAAGCCC+AGG - chr6.3:75395872-75395891 MS.gene05351:intron 60.0%
TGAGCTGACGCCAGAGATGC+GGG - chr6.3:75395743-75395762 MS.gene05351:CDS 60.0%
! ATCCTCCCTTTTCCGACGCC+CGG + chr6.3:75393863-75393882 None:intergenic 60.0%
! TTGGGCGTCTGAGGCGTTCA+AGG - chr6.3:75393812-75393831 MS.gene05351:intron 60.0%
!! ACGCTCGTCGCAGTATTGGC+CGG + chr6.3:75394091-75394110 None:intergenic 60.0%
!! GAAGAACCGGGCGTCGGAAA+AGG - chr6.3:75393854-75393873 MS.gene05351:intron 60.0%
AAGCGGCGCACTAGTGTGGG+AGG + chr6.3:75395907-75395926 None:intergenic 65.0%
AGCGGCGCACTAGTGTGGGA+GGG + chr6.3:75395906-75395925 None:intergenic 65.0%
CGCATCTCTGGCGTCAGCTC+AGG + chr6.3:75395744-75395763 None:intergenic 65.0%
GTATGACCGGCAGCTTGCCG+AGG - chr6.3:75395536-75395555 MS.gene05351:CDS 65.0%
GTGGGAGGGACCTTGAGCCT+GGG + chr6.3:75395892-75395911 None:intergenic 65.0%
TGGCGTCAGCTCAGGCTGCT+GGG + chr6.3:75395736-75395755 None:intergenic 65.0%
TGTGGGAGGGACCTTGAGCC+TGG + chr6.3:75395893-75395912 None:intergenic 65.0%
! CGAGCGTGCTAGGAGTGTGC+AGG - chr6.3:75394104-75394123 MS.gene05351:intron 65.0%
! CGGAGAGCACGCTGAGCGTA+TGG - chr6.3:75393911-75393930 MS.gene05351:intron 65.0%
!! AACCGGGCGTCGGAAAAGGG+AGG - chr6.3:75393858-75393877 MS.gene05351:intron 65.0%
CGTCAGCTCAGGCTGCTGGG+AGG + chr6.3:75395733-75395752 None:intergenic 70.0%
CTGGCGTCAGCTCAGGCTGC+TGG + chr6.3:75395737-75395756 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 75393276 75395992 75393276 ID=MS.gene05351
chr6.3 mRNA 75393276 75395992 75393276 ID=MS.gene05351.t1;Parent=MS.gene05351
chr6.3 exon 75395919 75395992 75395919 ID=MS.gene05351.t1.exon1;Parent=MS.gene05351.t1
chr6.3 CDS 75395919 75395992 75395919 ID=cds.MS.gene05351.t1;Parent=MS.gene05351.t1
chr6.3 exon 75395717 75395843 75395717 ID=MS.gene05351.t1.exon2;Parent=MS.gene05351.t1
chr6.3 CDS 75395717 75395843 75395717 ID=cds.MS.gene05351.t1;Parent=MS.gene05351.t1
chr6.3 exon 75395336 75395626 75395336 ID=MS.gene05351.t1.exon3;Parent=MS.gene05351.t1
chr6.3 CDS 75395336 75395626 75395336 ID=cds.MS.gene05351.t1;Parent=MS.gene05351.t1
chr6.3 exon 75395143 75395244 75395143 ID=MS.gene05351.t1.exon4;Parent=MS.gene05351.t1
chr6.3 CDS 75395143 75395244 75395143 ID=cds.MS.gene05351.t1;Parent=MS.gene05351.t1
chr6.3 exon 75393276 75393737 75393276 ID=MS.gene05351.t1.exon5;Parent=MS.gene05351.t1
chr6.3 CDS 75393276 75393737 75393276 ID=cds.MS.gene05351.t1;Parent=MS.gene05351.t1
Gene Sequence

>MS.gene05351

ATGTTTAATGATGTTTACCCGGATTATCCGAGAGATTCTCGTCGTCGATTCATCTTAAGGCCTAGTGGAAACTCGTAAGTTCAATTTCAATTATTTTATGTATATGTTAAGTTGTAATAATGTTTAATTATGAGTTTATATTGTTTCAGCTTTTTGCCTTCCAAACCAGCTGCTGAAGCAATCAGACCCATCATTCATAACTGCTATCATCACTTTTGGAAGACATATGGTGATGTGGATGATAATGAAAAAGAGCGCTGGTTTAGGCTCTTTCAGGTTACTTCAAAACTATATCATAATTTTTATTTTATTTCATATGCACAATTGTTATAGTATACTAATTTTGTTTAATATGTTATAATGCAGACCAAGTGTTCTTGGGAAGCTATGTATAATGATATAATGAAGCGTAATTTTCATATCAGAGCTGCTGCACGTTTTTCGGATTTACTTAGAAGAGCCCGTATGCGGTTTGAGGAGACAAGAAAGCGGCCACATTGGATTGGCCCGCCTATCTTTGGTGAATTGGTTAAGTATTGGGCGTCTGAGGCGTTCAAGGAAAAATCCGACAAAGCAAAGAAGAACCGGGCGTCGGAAAAGGGAGGATGCATTCACACTGGTGGTTGCTTAAGCAACGGAGAGCACGCTGAGCGTATGGTAAAAATAATATACTTTTATTTATTTTTCCATATCATTTAATTTTGATTGTTTTAAATCAATACTAAATTTTATTTCATGTGACAAATAGGCTAGGAGGTTACGTCGGGATCCGTTTATTAACGAGCTTCACGACGAAACGCACAAAAATAAGTCCGGCCAATACTGCGACGAGCGTGCTAGGAGTGTGCAGGTAATCTTGTCGTATCTCTCAGTTTTGGTTTTGCATTTTTGCACTATTTTTGTTGCAGTTTGGTACCAGTTCTGTCTTGTTTGTCATTTGGCACATTTTTTTTAATCCGAATTGTGGTCTGGCCCCAACTTTTGCTTAACTGAAATTTGGTCTCGACTCTTGTTCTAGATATGATTTGGTCTGCGACTCATGTTTCTGTCAAAAAAATTGAGGATTTTATAAAAGGCTCAAATTTTGTTGTTTAGTTTTTTGTGAATTATGATCGATTGTTGGTTTAATCCCTAACTCCTTCCCTCACCAGAGTTTTATCATAAGTCTCATTCCTAAAGATGCAACTCCTGAGATAATTATGTGTGCTAGTTTTGAAAAATTTGAGAAAAATCAGGTTGAGATACTTCTTCATCGCATATTTGCTTTTTGAAAGAATAGAAAAGGATGAAACATCATAGTTCCATATCAATTTCATTTTTACTGTTGTTGAATTTCTCTGATTGGTTATGAGATTGTGTATTGACATCCGAAGAATTGAGCTATGTAATGGCCTCGTTGCTGCTGATATCACAATCATCTAATGTTATTTCTTAATGTATCGATATCCTAATGTTGACTTATGAGTCTTGTTATTGCATCCAACCATCTGTCCGCGGTAATTTTAATCGACTTTGTTGATTCTTACAAGGATCTTCCCTGTTATTGCTTATGAATTTGTGTTATAGATGTCTTGCGGCAACTTTGGACTTCCTCTGTATCATTCATCACCTTCATCATGACACGTGAGCGGATGTGTTCCGTTCTTCATTGCCTAGAGACATGGCCTAAATAGATATTATAAGGCTTGAGTGACCCTTACCTTAGTACTCAGTTTTGTGGGATTGAGTTACAGCCGCGTCTGATCTGAGCATGGAGGATTGTGATTTTTTTATCTATGCAATATAGTTCTATTTTATATCTCTGATTAGCTGACTCTATTCATTTTGAGCATGTGCATTCTGCAGTATGATTGCATAATAGAAACTTAACTTAAGCCACTTGATTCTATATAGTTTTCATATTAGATATTATAATAAGCATTGACATAATTATAGAATTTAGAACTTATCACAGGTTGCACCAGCCAATGTGTTCTTAATCTTTATATAAACATAAGCTTATACGTATTTTATTTCTTTGAGAGATCCTATAAGCAATTACAACTTGCCAAACCTGTTATGTGATTGCAAGAAAACTAAAAATAAACAAATGTGTGCAATTGATGTACATGATAAGTGCCATTCTTATGATTAGTTTCCTTATTTTGTTTATTATCAAAATTAGTTTCTCTGTTTAACTGCACTCTCCTTACACTGTTTCTCTGTTATTATCCTTGCCAGTTCTGTCCTTAAATATTTTGTTATTATTTGAACAGGAGGAGTATGACCGGCAGCTTGCCGAGGCTATTTCTAATGGGTCTACTGTTGATTATTCTTTGACCTTCAACACTTGGAAAAAAGTTGCTGGAGACAAGAAGAAGGGAAAGCTATACGGTCTTGGTAACTTGGCTGCTAACTACCGGAAGGGTAGTGTTGCATCAACCCTAAGACTAACCCTCAATCATGGTGAAGGGTCCTCCCAGCAGCCTGAGCTGACGCCAGAGATGCGGGAGCTTATTCACCGTTTGACGCAAGAGCAATTAACGCAACAGATGGCAAGTCAAGCGGCTGTTATACAAGATTTGCTTAACCGTCAAAGGTCATATGAGGAGCAGCTGGCACAGTTTAGGCAAGCCCAGGCTCAAGGTCCCTCCCACACTAGTGCGCCGCTTTTAAGTCCCAATGTTGAGCCTTATCCGGTAGATGAGGAGGATGATGAGGATCATGATGAGGATTGA

Protein sequence

>MS.gene05351.t1

MFNDVYPDYPRDSRRRFILRPSGNSFLPSKPAAEAIRPIIHNCYHHFWKTYGDVDDNEKERWFRLFQTKCSWEAMYNDIMKRNFHIRAAARFSDLLRRARMRFEETRKRPHWIGPPIFGELVKYWASEAFKEKSDKAKKNRASEKGGCIHTGGCLSNGEHAERMARRLRRDPFINELHDETHKNKSGQYCDERARSVQEEYDRQLAEAISNGSTVDYSLTFNTWKKVAGDKKKGKLYGLGNLAANYRKGSVASTLRLTLNHGEGSSQQPELTPEMRELIHRLTQEQLTQQMASQAAVIQDLLNRQRSYEEQLAQFRQAQAQGPSHTSAPLLSPNVEPYPVDEEDDEDHDED