Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09538.t1 | XP_003611669.1 | 98.9 | 182 | 2 | 0 | 1 | 182 | 1 | 182 | 6.90E-97 | 363.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09538.t1 | P51823 | 88.3 | 180 | 21 | 0 | 1 | 180 | 1 | 180 | 7.0e-90 | 331.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09538.t1 | G7K590 | 98.9 | 182 | 2 | 0 | 1 | 182 | 1 | 182 | 5.0e-97 | 363.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059247 | MS.gene09538 | 0.802711 | 4.93E-49 | -1.69E-46 |
| MS.gene059958 | MS.gene09538 | 0.807144 | 5.83E-50 | -1.69E-46 |
| MS.gene061114 | MS.gene09538 | -0.804806 | 1.81E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09538.t1 | MTR_5g016540 | 98.901 | 182 | 2 | 0 | 1 | 182 | 1 | 182 | 1.79e-134 | 373 |
| MS.gene09538.t1 | MTR_5g034130 | 87.778 | 180 | 22 | 0 | 1 | 180 | 1 | 180 | 9.34e-121 | 338 |
| MS.gene09538.t1 | MTR_5g034125 | 87.778 | 180 | 22 | 0 | 1 | 180 | 1 | 180 | 9.34e-121 | 338 |
| MS.gene09538.t1 | MTR_1g086480 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 3.06e-120 | 337 |
| MS.gene09538.t1 | MTR_6g005820 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 5.17e-120 | 337 |
| MS.gene09538.t1 | MTR_7g109960 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.52e-119 | 335 |
| MS.gene09538.t1 | MTR_5g007810 | 59.887 | 177 | 71 | 0 | 1 | 177 | 1 | 177 | 2.56e-80 | 237 |
| MS.gene09538.t1 | MTR_4g077640 | 58.757 | 177 | 73 | 0 | 1 | 177 | 1 | 177 | 1.90e-77 | 229 |
| MS.gene09538.t1 | MTR_4g128910 | 56.983 | 179 | 77 | 0 | 1 | 179 | 1 | 179 | 6.89e-77 | 228 |
| MS.gene09538.t1 | MTR_5g007820 | 53.846 | 182 | 82 | 1 | 1 | 180 | 1 | 182 | 1.04e-72 | 217 |
| MS.gene09538.t1 | MTR_1g076550 | 50.556 | 180 | 89 | 0 | 1 | 180 | 1 | 180 | 8.51e-66 | 199 |
| MS.gene09538.t1 | MTR_5g007840 | 41.315 | 213 | 80 | 2 | 1 | 180 | 1 | 201 | 1.71e-54 | 172 |
| MS.gene09538.t1 | MTR_8g077540 | 47.590 | 166 | 84 | 3 | 18 | 181 | 17 | 181 | 4.14e-49 | 157 |
| MS.gene09538.t1 | MTR_8g077540 | 47.590 | 166 | 84 | 3 | 18 | 181 | 43 | 207 | 5.82e-49 | 158 |
| MS.gene09538.t1 | MTR_2g022200 | 34.682 | 173 | 102 | 2 | 10 | 173 | 10 | 180 | 5.06e-36 | 124 |
| MS.gene09538.t1 | MTR_5g078090 | 34.337 | 166 | 108 | 1 | 9 | 173 | 11 | 176 | 1.97e-30 | 110 |
| MS.gene09538.t1 | MTR_5g015370 | 33.735 | 166 | 109 | 1 | 9 | 173 | 11 | 176 | 1.61e-29 | 107 |
| MS.gene09538.t1 | MTR_8g077540 | 51.020 | 98 | 46 | 2 | 18 | 114 | 17 | 113 | 7.67e-29 | 104 |
| MS.gene09538.t1 | MTR_4g026950 | 33.121 | 157 | 104 | 1 | 18 | 173 | 1 | 157 | 2.81e-26 | 98.6 |
| MS.gene09538.t1 | MTR_2g034640 | 32.768 | 177 | 103 | 2 | 15 | 177 | 18 | 192 | 1.16e-25 | 97.8 |
| MS.gene09538.t1 | MTR_7g112090 | 32.203 | 177 | 104 | 2 | 15 | 177 | 18 | 192 | 2.61e-25 | 97.1 |
| MS.gene09538.t1 | MTR_4g121860 | 32.203 | 177 | 104 | 2 | 15 | 177 | 18 | 192 | 9.13e-24 | 92.8 |
| MS.gene09538.t1 | MTR_1g062760 | 35.294 | 85 | 51 | 1 | 18 | 98 | 15 | 99 | 2.10e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09538.t1 | AT3G62290 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 5.98e-120 | 337 |
| MS.gene09538.t1 | AT3G62290 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 5.98e-120 | 337 |
| MS.gene09538.t1 | AT3G62290 | 87.222 | 180 | 23 | 0 | 1 | 180 | 1 | 180 | 5.98e-120 | 337 |
| MS.gene09538.t1 | AT1G10630 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.68e-119 | 335 |
| MS.gene09538.t1 | AT1G10630 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 1.68e-119 | 335 |
| MS.gene09538.t1 | AT1G70490 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.60e-119 | 335 |
| MS.gene09538.t1 | AT1G70490 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.60e-119 | 335 |
| MS.gene09538.t1 | AT1G70490 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.60e-119 | 335 |
| MS.gene09538.t1 | AT1G70490 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.60e-119 | 335 |
| MS.gene09538.t1 | AT1G70490 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.60e-119 | 335 |
| MS.gene09538.t1 | AT1G70490 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.60e-119 | 335 |
| MS.gene09538.t1 | AT1G23490 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.60e-119 | 335 |
| MS.gene09538.t1 | AT1G70490 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 2.60e-119 | 335 |
| MS.gene09538.t1 | AT5G14670 | 86.188 | 181 | 25 | 0 | 1 | 181 | 1 | 181 | 2.67e-119 | 335 |
| MS.gene09538.t1 | AT2G47170 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 3.82e-119 | 335 |
| MS.gene09538.t1 | AT2G47170 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 3.82e-119 | 335 |
| MS.gene09538.t1 | AT2G47170 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 3.82e-119 | 335 |
| MS.gene09538.t1 | AT5G14670 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 4.65e-119 | 334 |
| MS.gene09538.t1 | AT5G14670 | 86.667 | 180 | 24 | 0 | 1 | 180 | 1 | 180 | 4.65e-119 | 334 |
| MS.gene09538.t1 | AT2G15310 | 70.000 | 180 | 54 | 0 | 1 | 180 | 1 | 180 | 1.91e-93 | 270 |
| MS.gene09538.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 7.02e-80 | 236 |
| MS.gene09538.t1 | AT5G17060 | 58.659 | 179 | 74 | 0 | 1 | 179 | 1 | 179 | 7.02e-80 | 236 |
| MS.gene09538.t1 | AT3G03120 | 59.322 | 177 | 72 | 0 | 1 | 177 | 1 | 177 | 3.08e-79 | 234 |
| MS.gene09538.t1 | AT2G24765 | 57.542 | 179 | 76 | 0 | 1 | 179 | 1 | 179 | 3.26e-78 | 231 |
| MS.gene09538.t1 | AT3G22950 | 51.667 | 180 | 87 | 0 | 1 | 180 | 1 | 180 | 4.47e-69 | 208 |
| MS.gene09538.t1 | AT3G22950 | 51.667 | 180 | 87 | 0 | 1 | 180 | 1 | 180 | 4.47e-69 | 208 |
| MS.gene09538.t1 | AT3G03120 | 61.538 | 130 | 50 | 0 | 1 | 130 | 1 | 130 | 3.62e-58 | 179 |
| MS.gene09538.t1 | AT2G24765 | 60.156 | 128 | 51 | 0 | 1 | 128 | 1 | 128 | 1.54e-55 | 172 |
| MS.gene09538.t1 | AT1G02430 | 46.774 | 186 | 89 | 4 | 1 | 176 | 1 | 186 | 6.34e-54 | 170 |
| MS.gene09538.t1 | AT1G02440 | 44.624 | 186 | 93 | 4 | 1 | 176 | 1 | 186 | 2.19e-53 | 168 |
| MS.gene09538.t1 | AT2G18390 | 47.590 | 166 | 84 | 3 | 18 | 181 | 17 | 181 | 2.88e-48 | 155 |
| MS.gene09538.t1 | AT1G02430 | 44.654 | 159 | 82 | 3 | 1 | 153 | 1 | 159 | 1.96e-42 | 140 |
| MS.gene09538.t1 | AT5G52210 | 32.955 | 176 | 111 | 1 | 5 | 173 | 5 | 180 | 3.13e-34 | 120 |
| MS.gene09538.t1 | AT5G52210 | 32.955 | 176 | 111 | 1 | 5 | 173 | 5 | 180 | 3.13e-34 | 120 |
| MS.gene09538.t1 | AT3G49870 | 34.940 | 166 | 107 | 1 | 9 | 173 | 11 | 176 | 3.70e-32 | 114 |
| MS.gene09538.t1 | AT5G67560 | 34.337 | 166 | 108 | 1 | 9 | 173 | 11 | 176 | 1.04e-31 | 113 |
| MS.gene09538.t1 | AT3G49870 | 35.032 | 157 | 101 | 1 | 18 | 173 | 1 | 157 | 7.85e-30 | 107 |
| MS.gene09538.t1 | AT5G37680 | 33.133 | 166 | 110 | 1 | 9 | 173 | 11 | 176 | 8.27e-30 | 108 |
| MS.gene09538.t1 | AT3G49860 | 34.940 | 166 | 107 | 1 | 16 | 180 | 10 | 175 | 2.24e-29 | 107 |
| MS.gene09538.t1 | AT3G62560 | 32.768 | 177 | 103 | 2 | 15 | 177 | 18 | 192 | 2.01e-25 | 97.4 |
| MS.gene09538.t1 | AT4G02080 | 32.000 | 175 | 107 | 2 | 15 | 177 | 18 | 192 | 5.84e-25 | 96.3 |
| MS.gene09538.t1 | AT1G56330 | 32.584 | 178 | 104 | 2 | 15 | 178 | 18 | 193 | 7.39e-25 | 95.9 |
| MS.gene09538.t1 | AT1G02440 | 31.818 | 154 | 69 | 2 | 1 | 153 | 1 | 119 | 1.33e-24 | 93.2 |
| MS.gene09538.t1 | AT1G09180 | 32.584 | 178 | 104 | 2 | 14 | 177 | 17 | 192 | 1.59e-24 | 95.1 |
| MS.gene09538.t1 | AT5G37680 | 33.594 | 128 | 85 | 0 | 46 | 173 | 2 | 129 | 5.11e-24 | 92.0 |
Find 33 sgRNAs with CRISPR-Local
Find 55 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGAAGGTCTTGCTTAT+TGG | 0.247726 | 5.2:-8249036 | None:intergenic |
| AAAATGTCAGCTTCACTGTC+TGG | 0.376569 | 5.2:+8248490 | MS.gene09538:CDS |
| TCTGCAATGCTCAAAGCATT+TGG | 0.384037 | 5.2:-8249053 | None:intergenic |
| AGCTTCACTGTCTGGGATGT+TGG | 0.414580 | 5.2:+8248498 | MS.gene09538:CDS |
| GACTCTATGAAGGCCTTGAT+TGG | 0.421761 | 5.2:+8249276 | MS.gene09538:CDS |
| CAGTCAACTTGTGCCACGTC+TGG | 0.434429 | 5.2:+8249248 | MS.gene09538:CDS |
| TACACAAGGTCTTATCTTTG+TGG | 0.464373 | 5.2:+8248808 | MS.gene09538:CDS |
| CAGACGTGGCACAAGTTGAC+TGG | 0.490705 | 5.2:-8249247 | None:intergenic |
| CATTCTATGAAGTTCATCTC+TGG | 0.495248 | 5.2:-8248864 | None:intergenic |
| TTTGGAACCTATGGTTGGTA+TGG | 0.503874 | 5.2:-8248334 | None:intergenic |
| TTTATGCAAAGAAAGAAATG+AGG | 0.508896 | 5.2:+8248235 | MS.gene09538:CDS |
| GCAGAAATTACTGATAAACT+TGG | 0.510496 | 5.2:+8249071 | MS.gene09538:CDS |
| ATTCACTTCGCCAGCGTCGT+TGG | 0.511745 | 5.2:+8249099 | MS.gene09538:CDS |
| ATACTCTACAAACTGAAGCT+TGG | 0.516539 | 5.2:+8248297 | MS.gene09538:CDS |
| AAATGTCAGCTTCACTGTCT+GGG | 0.518950 | 5.2:+8248491 | MS.gene09538:CDS |
| ATGGTAGGTCTTGATGCTGC+TGG | 0.522575 | 5.2:+8248264 | MS.gene09538:CDS |
| TTCACTGTCTGGGATGTTGG+AGG | 0.531178 | 5.2:+8248501 | MS.gene09538:CDS |
| TGTTACTTGATAACCAATCA+AGG | 0.534396 | 5.2:-8249289 | None:intergenic |
| ATTGGCAAATACAAGTAAAG+TGG | 0.538360 | 5.2:-8249018 | None:intergenic |
| GACTATTTGGAACCTATGGT+TGG | 0.543143 | 5.2:-8248339 | None:intergenic |
| GAAAGAAATGAGGATTCTGA+TGG | 0.583316 | 5.2:+8248245 | MS.gene09538:CDS |
| GAAATGAGGATTCTGATGGT+AGG | 0.584694 | 5.2:+8248249 | MS.gene09538:CDS |
| ACTTGTGCCACGTCTGGACA+AGG | 0.593035 | 5.2:+8249254 | MS.gene09538:CDS |
| TCGTGTAGATTCGACCATTG+TGG | 0.593428 | 5.2:+8248768 | MS.gene09538:intron |
| CAATGCTCAAAGCATTTGGA+AGG | 0.595533 | 5.2:-8249049 | None:intergenic |
| TCTGGACAAGGACTCTATGA+AGG | 0.595755 | 5.2:+8249266 | MS.gene09538:CDS |
| ACGTGACTTACCAACGACGC+TGG | 0.609941 | 5.2:-8249109 | None:intergenic |
| TGAAAATAGTGTCTCCACAA+TGG | 0.619967 | 5.2:-8248782 | None:intergenic |
| ATAGAGTCCTTGTCCAGACG+TGG | 0.637305 | 5.2:-8249261 | None:intergenic |
| GGATGTTGGAGGACAAGACA+AGG | 0.648549 | 5.2:+8248512 | MS.gene09538:CDS |
| AAATGGGGTTGACAGTGTCA+CGG | 0.652051 | 5.2:+8248199 | None:intergenic |
| GTCACTACCATACCAACCAT+AGG | 0.654409 | 5.2:+8248327 | MS.gene09538:CDS |
| ACTTCATAGAATGCTTAGTG+AGG | 0.676324 | 5.2:+8248874 | MS.gene09538:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAGATATTATTTTTCAA+TGG | - | chr5.2:8248364-8248383 | None:intergenic | 10.0% |
| !! | TTAATAAGCATTTACATTGT+AGG | + | chr5.2:8248980-8248999 | MS.gene09538:intron | 20.0% |
| !!! | TATTTCACTTTTATGTTGAA+AGG | - | chr5.2:8248946-8248965 | None:intergenic | 20.0% |
| !!! | TTATTTTTCAATGGACTATT+TGG | - | chr5.2:8248355-8248374 | None:intergenic | 20.0% |
| ! | TTAAAATGATCATAGGGAAT+AGG | - | chr5.2:8248394-8248413 | None:intergenic | 25.0% |
| ! | TTTAATGTCTCAAATGAATC+AGG | + | chr5.2:8248441-8248460 | MS.gene09538:intron | 25.0% |
| ! | TTTATGCAAAGAAAGAAATG+AGG | + | chr5.2:8248235-8248254 | MS.gene09538:CDS | 25.0% |
| ! | TTTCGCTTAAAATGATCATA+GGG | - | chr5.2:8248400-8248419 | None:intergenic | 25.0% |
| !! | ACTTGTTAGAACATATAAGA+AGG | - | chr5.2:8248696-8248715 | None:intergenic | 25.0% |
| !! | TTTTCGCTTAAAATGATCAT+AGG | - | chr5.2:8248401-8248420 | None:intergenic | 25.0% |
| AAGCTTCAGATAATGATTCA+TGG | - | chr5.2:8249143-8249162 | None:intergenic | 30.0% | |
| ATAATCCAAAGTTGAGTTCA+GGG | + | chr5.2:8249200-8249219 | MS.gene09538:intron | 30.0% | |
| ATTGGCAAATACAAGTAAAG+TGG | - | chr5.2:8249021-8249040 | None:intergenic | 30.0% | |
| CATAGTTCAATCAAGTGAAA+GGG | - | chr5.2:8248657-8248676 | None:intergenic | 30.0% | |
| GCAGAAATTACTGATAAACT+TGG | + | chr5.2:8249071-8249090 | MS.gene09538:CDS | 30.0% | |
| GTTAGAACATATAAGAAGGT+TGG | - | chr5.2:8248692-8248711 | None:intergenic | 30.0% | |
| TCATAGTTCAATCAAGTGAA+AGG | - | chr5.2:8248658-8248677 | None:intergenic | 30.0% | |
| ! | CACTATTTTCAGAATACACA+AGG | + | chr5.2:8248794-8248813 | MS.gene09538:CDS | 30.0% |
| ! | TCTAGTTTGCAATATGAACA+TGG | - | chr5.2:8248570-8248589 | None:intergenic | 30.0% |
| ! | TGTTACTTGATAACCAATCA+AGG | - | chr5.2:8249292-8249311 | None:intergenic | 30.0% |
| ACTTCATAGAATGCTTAGTG+AGG | + | chr5.2:8248874-8248893 | MS.gene09538:CDS | 35.0% | |
| AGGTAATTCAGTTTGCACAT+TGG | + | chr5.2:8248624-8248643 | MS.gene09538:intron | 35.0% | |
| ATACTCTACAAACTGAAGCT+TGG | + | chr5.2:8248297-8248316 | MS.gene09538:CDS | 35.0% | |
| ATTTGGAAGGTCTTGCTTAT+TGG | - | chr5.2:8249039-8249058 | None:intergenic | 35.0% | |
| CATAATCCAAAGTTGAGTTC+AGG | + | chr5.2:8249199-8249218 | MS.gene09538:intron | 35.0% | |
| CATTCTATGAAGTTCATCTC+TGG | - | chr5.2:8248867-8248886 | None:intergenic | 35.0% | |
| GAAAGAAATGAGGATTCTGA+TGG | + | chr5.2:8248245-8248264 | MS.gene09538:CDS | 35.0% | |
| TGAAAATAGTGTCTCCACAA+TGG | - | chr5.2:8248785-8248804 | None:intergenic | 35.0% | |
| ! | TACACAAGGTCTTATCTTTG+TGG | + | chr5.2:8248808-8248827 | MS.gene09538:CDS | 35.0% |
| !! | AATGGACTATTTGGAACCTA+TGG | - | chr5.2:8248346-8248365 | None:intergenic | 35.0% |
| AAAATGTCAGCTTCACTGTC+TGG | + | chr5.2:8248490-8248509 | MS.gene09538:CDS | 40.0% | |
| AAACACCCTGAACTCAACTT+TGG | - | chr5.2:8249208-8249227 | None:intergenic | 40.0% | |
| AAATGTCAGCTTCACTGTCT+GGG | + | chr5.2:8248491-8248510 | MS.gene09538:CDS | 40.0% | |
| GAAATGAGGATTCTGATGGT+AGG | + | chr5.2:8248249-8248268 | MS.gene09538:CDS | 40.0% | |
| ! | CAATGCTCAAAGCATTTGGA+AGG | - | chr5.2:8249052-8249071 | None:intergenic | 40.0% |
| ! | GACTATTTGGAACCTATGGT+TGG | - | chr5.2:8248342-8248361 | None:intergenic | 40.0% |
| ! | TCTGCAATGCTCAAAGCATT+TGG | - | chr5.2:8249056-8249075 | None:intergenic | 40.0% |
| ! | TTTGGAACCTATGGTTGGTA+TGG | - | chr5.2:8248337-8248356 | None:intergenic | 40.0% |
| GACTCTATGAAGGCCTTGAT+TGG | + | chr5.2:8249276-8249295 | MS.gene09538:CDS | 45.0% | |
| GTCACTACCATACCAACCAT+AGG | + | chr5.2:8248327-8248346 | MS.gene09538:CDS | 45.0% | |
| GTTGACTGGATGTACCTGAA+CGG | - | chr5.2:8249236-8249255 | None:intergenic | 45.0% | |
| TCGTGTAGATTCGACCATTG+TGG | + | chr5.2:8248768-8248787 | MS.gene09538:intron | 45.0% | |
| TCTGGACAAGGACTCTATGA+AGG | + | chr5.2:8249266-8249285 | MS.gene09538:CDS | 45.0% | |
| !! | AGGGTGTTTTTGATCCGTTC+AGG | + | chr5.2:8249219-8249238 | MS.gene09538:intron | 45.0% |
| !! | TAATAATAATAATAATAATG+AGG | + | chr5.2:8248604-8248623 | MS.gene09538:intron | 5.0% |
| ATAGAGTCCTTGTCCAGACG+TGG | - | chr5.2:8249264-8249283 | None:intergenic | 50.0% | |
| ATGGTAGGTCTTGATGCTGC+TGG | + | chr5.2:8248264-8248283 | MS.gene09538:CDS | 50.0% | |
| GGATGTTGGAGGACAAGACA+AGG | + | chr5.2:8248512-8248531 | MS.gene09538:CDS | 50.0% | |
| ! | AGCTTCACTGTCTGGGATGT+TGG | + | chr5.2:8248498-8248517 | MS.gene09538:CDS | 50.0% |
| ! | TTCACTGTCTGGGATGTTGG+AGG | + | chr5.2:8248501-8248520 | MS.gene09538:CDS | 50.0% |
| ACGTGACTTACCAACGACGC+TGG | - | chr5.2:8249112-8249131 | None:intergenic | 55.0% | |
| ACTTGTGCCACGTCTGGACA+AGG | + | chr5.2:8249254-8249273 | MS.gene09538:CDS | 55.0% | |
| ATTCACTTCGCCAGCGTCGT+TGG | + | chr5.2:8249099-8249118 | MS.gene09538:CDS | 55.0% | |
| CAGTCAACTTGTGCCACGTC+TGG | + | chr5.2:8249248-8249267 | MS.gene09538:CDS | 55.0% | |
| ! | CAGACGTGGCACAAGTTGAC+TGG | - | chr5.2:8249250-8249269 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 8248201 | 8249331 | 8248201 | ID=MS.gene09538 |
| chr5.2 | mRNA | 8248201 | 8249331 | 8248201 | ID=MS.gene09538.t1;Parent=MS.gene09538 |
| chr5.2 | exon | 8248201 | 8248348 | 8248201 | ID=MS.gene09538.t1.exon1;Parent=MS.gene09538.t1 |
| chr5.2 | CDS | 8248201 | 8248348 | 8248201 | ID=cds.MS.gene09538.t1;Parent=MS.gene09538.t1 |
| chr5.2 | exon | 8248463 | 8248533 | 8248463 | ID=MS.gene09538.t1.exon2;Parent=MS.gene09538.t1 |
| chr5.2 | CDS | 8248463 | 8248533 | 8248463 | ID=cds.MS.gene09538.t1;Parent=MS.gene09538.t1 |
| chr5.2 | exon | 8248776 | 8248895 | 8248776 | ID=MS.gene09538.t1.exon3;Parent=MS.gene09538.t1 |
| chr5.2 | CDS | 8248776 | 8248895 | 8248776 | ID=cds.MS.gene09538.t1;Parent=MS.gene09538.t1 |
| chr5.2 | exon | 8249002 | 8249120 | 8249002 | ID=MS.gene09538.t1.exon4;Parent=MS.gene09538.t1 |
| chr5.2 | CDS | 8249002 | 8249120 | 8249002 | ID=cds.MS.gene09538.t1;Parent=MS.gene09538.t1 |
| chr5.2 | exon | 8249241 | 8249331 | 8249241 | ID=MS.gene09538.t1.exon5;Parent=MS.gene09538.t1 |
| chr5.2 | CDS | 8249241 | 8249331 | 8249241 | ID=cds.MS.gene09538.t1;Parent=MS.gene09538.t1 |
| Gene Sequence |
| Protein sequence |
