Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09718.t1 | XP_003611381.1 | 95.2 | 227 | 11 | 0 | 1 | 227 | 1 | 227 | 5.60E-112 | 413.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09718.t1 | Q9LD45 | 70.3 | 229 | 65 | 1 | 1 | 226 | 1 | 229 | 8.2e-88 | 324.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09718.t1 | G7JYK5 | 95.2 | 227 | 11 | 0 | 1 | 227 | 1 | 227 | 4.0e-112 | 413.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055549 | MS.gene09718 | 0.805315 | 1.42E-49 | -1.69E-46 |
| MS.gene055550 | MS.gene09718 | 0.816704 | 4.82E-52 | -1.69E-46 |
| MS.gene056530 | MS.gene09718 | 0.818124 | 2.31E-52 | -1.69E-46 |
| MS.gene05884 | MS.gene09718 | 0.847034 | 1.49E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09718.t1 | MTR_5g013340 | 95.175 | 228 | 11 | 0 | 1 | 228 | 1 | 228 | 1.49e-153 | 426 |
| MS.gene09718.t1 | MTR_5g013340 | 94.350 | 177 | 10 | 0 | 1 | 177 | 1 | 177 | 8.23e-115 | 327 |
| MS.gene09718.t1 | MTR_6g083250 | 85.075 | 134 | 20 | 0 | 34 | 167 | 27 | 160 | 4.33e-78 | 233 |
| MS.gene09718.t1 | MTR_4g099430 | 51.786 | 168 | 47 | 5 | 13 | 176 | 28 | 165 | 6.07e-35 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09718.t1 | AT5G47120 | 70.130 | 231 | 66 | 1 | 1 | 228 | 1 | 231 | 2.01e-109 | 315 |
| MS.gene09718.t1 | AT4G17580 | 50.661 | 227 | 97 | 2 | 14 | 227 | 8 | 232 | 1.78e-71 | 218 |
| MS.gene09718.t1 | AT5G47130 | 47.005 | 217 | 103 | 3 | 17 | 228 | 2 | 211 | 8.57e-64 | 198 |
| MS.gene09718.t1 | AT5G47130 | 46.734 | 199 | 94 | 3 | 35 | 228 | 2 | 193 | 1.41e-55 | 176 |
| MS.gene09718.t1 | AT5G47130 | 47.458 | 177 | 81 | 3 | 57 | 228 | 3 | 172 | 1.20e-49 | 160 |
Find 63 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTGGCTTGGTTTCTTC+TGG | 0.110151 | 5.3:+6385490 | MS.gene09718:CDS |
| TCGCAACTGCCTTGGCTTTC+GGG | 0.124016 | 5.3:+6385419 | MS.gene09718:CDS |
| CACTTTGCTTCTGCCATCTT+TGG | 0.129193 | 5.3:+6385535 | MS.gene09718:CDS |
| CTACATTTGCAGTTGTATTT+TGG | 0.131459 | 5.3:+6385675 | MS.gene09718:intron |
| GTCGCAACTGCCTTGGCTTT+CGG | 0.172277 | 5.3:+6385418 | MS.gene09718:CDS |
| GATGGCCGCGGCAATGTTTC+AGG | 0.202705 | 5.3:+6384819 | MS.gene09718:CDS |
| CCTGACCTTGTTTACTGATT+TGG | 0.272374 | 5.3:+6385788 | MS.gene09718:CDS |
| CTTGGCTTTCGGGTGTTTCT+CGG | 0.282337 | 5.3:+6385429 | MS.gene09718:CDS |
| ATGTTTCAGGGTGCTTCTAT+TGG | 0.319086 | 5.3:+6384832 | MS.gene09718:CDS |
| TATTGGACCCTTGATTAATT+CGG | 0.322576 | 5.3:+6384849 | MS.gene09718:CDS |
| TGCCATCTTTGGAGGTTCAA+TGG | 0.338989 | 5.3:+6385546 | MS.gene09718:CDS |
| TTGGTGGCTTGGTTTCTTCT+GGG | 0.360140 | 5.3:+6385491 | MS.gene09718:CDS |
| GTACCTCTACCTTGGTGGCT+TGG | 0.360734 | 5.3:+6385480 | MS.gene09718:CDS |
| GTGTTTCTCGGGAGCAGCTT+TGG | 0.393747 | 5.3:+6385441 | MS.gene09718:CDS |
| AAAGAGGTTGACTTTGTTGA+TGG | 0.398644 | 5.3:+6384801 | MS.gene09718:CDS |
| TTGGCTTTCGGGTGTTTCTC+GGG | 0.400338 | 5.3:+6385430 | MS.gene09718:CDS |
| TTTGCTTCTGCCATCTTTGG+AGG | 0.415758 | 5.3:+6385538 | MS.gene09718:CDS |
| AATGGCTCTCGTTAAGTTTG+AGG | 0.419587 | 5.3:+6385564 | MS.gene09718:CDS |
| TTCATTTGTCGCAACTGCCT+TGG | 0.420717 | 5.3:+6385411 | MS.gene09718:CDS |
| CCAAATCAGTAAACAAGGTC+AGG | 0.425444 | 5.3:-6385788 | None:intergenic |
| CTGGGTTGTCCATTCTTATG+TGG | 0.437083 | 5.3:+6385509 | MS.gene09718:CDS |
| GCTGTGGTGGCTGCTTCTGT+TGG | 0.440092 | 5.3:+6384568 | MS.gene09718:CDS |
| CAGCTTTGGTTGCTAAGCGC+AGG | 0.458313 | 5.3:+6385455 | MS.gene09718:CDS |
| CGTTCAGAATCATCTCAAAC+AGG | 0.459060 | 5.3:+6384151 | MS.gene09718:CDS |
| ATGGCCGCGGCAATGTTTCA+GGG | 0.465472 | 5.3:+6384820 | MS.gene09718:CDS |
| GAAATCCATACCTCTTCAAA+AGG | 0.471008 | 5.3:-6384679 | None:intergenic |
| TTGAATAGCCGAATTAATCA+AGG | 0.480018 | 5.3:-6384857 | None:intergenic |
| CGTGTGTGGGAATTAGTGTT+TGG | 0.486280 | 5.3:+6384641 | MS.gene09718:CDS |
| CTCCATGTCCTTCTCAACAT+TGG | 0.493334 | 5.3:+6384598 | MS.gene09718:CDS |
| CATGTCCTTCTCAACATTGG+TGG | 0.511225 | 5.3:+6384601 | MS.gene09718:CDS |
| TCTTACCACAATTGCGTGTG+TGG | 0.522216 | 5.3:+6384627 | MS.gene09718:CDS |
| GTTGACTTTGTTGATGGCCG+CGG | 0.524903 | 5.3:+6384807 | MS.gene09718:CDS |
| GACCTTGTGTTTCGCTGTGG+TGG | 0.526552 | 5.3:+6384555 | MS.gene09718:CDS |
| TTTATGGTATGCAGCGAAAG+AGG | 0.532864 | 5.3:+6384785 | MS.gene09718:intron |
| AGCCATTGAACCTCCAAAGA+TGG | 0.536659 | 5.3:-6385548 | None:intergenic |
| CGAGAAACACCCGAAAGCCA+AGG | 0.557128 | 5.3:-6385428 | None:intergenic |
| AGCTTTGGTTGCTAAGCGCA+GGG | 0.566850 | 5.3:+6385456 | MS.gene09718:CDS |
| AAACCAAGCCACCAAGGTAG+AGG | 0.568434 | 5.3:-6385483 | None:intergenic |
| TTACAATGATGAGTAGAATC+CGG | 0.571426 | 5.3:-6385824 | None:intergenic |
| AGGGAGTACCTCTACCTTGG+TGG | 0.572036 | 5.3:+6385475 | MS.gene09718:CDS |
| ATAGTTGAGAAGGCACACTT+TGG | 0.576217 | 5.3:+6385741 | MS.gene09718:CDS |
| AGCCACCACAGCGAAACACA+AGG | 0.576748 | 5.3:-6384557 | None:intergenic |
| TCTTCGATTCAACACCTCGA+TGG | 0.580588 | 5.3:+6384087 | MS.gene09718:CDS |
| CGCAGGGAGTACCTCTACCT+TGG | 0.582527 | 5.3:+6385472 | MS.gene09718:CDS |
| CGGCTATTCAAGTCGATCCA+AGG | 0.582719 | 5.3:+6384869 | MS.gene09718:CDS |
| GAATACCACCAATGTTGAGA+AGG | 0.591899 | 5.3:-6384606 | None:intergenic |
| AAAGTGCAACCACATAAGAA+TGG | 0.591952 | 5.3:-6385518 | None:intergenic |
| ATCCATACCTCTTCAAAAGG+AGG | 0.597690 | 5.3:-6384676 | None:intergenic |
| AATTCCCACACACGCAATTG+TGG | 0.599033 | 5.3:-6384632 | None:intergenic |
| CACGCAAGAAATAGTTGAGA+AGG | 0.601852 | 5.3:+6385731 | MS.gene09718:CDS |
| CTTACCACAATTGCGTGTGT+GGG | 0.603529 | 5.3:+6384628 | MS.gene09718:CDS |
| TGCAACCAAATCAGTAAACA+AGG | 0.603621 | 5.3:-6385793 | None:intergenic |
| CAGAAGAAACCAAGCCACCA+AGG | 0.620970 | 5.3:-6385489 | None:intergenic |
| GTTTGAGATGATTCTGAACG+CGG | 0.622509 | 5.3:-6384148 | None:intergenic |
| TTTGAGATGATTCTGAACGC+GGG | 0.635009 | 5.3:-6384147 | None:intergenic |
| CACCAATGTTGAGAAGGACA+TGG | 0.637929 | 5.3:-6384600 | None:intergenic |
| CAAATCAGTAAACAAGGTCA+GGG | 0.638032 | 5.3:-6385787 | None:intergenic |
| TTGAGATGATTCTGAACGCG+GGG | 0.639066 | 5.3:-6384146 | None:intergenic |
| TGAATAGCCGAATTAATCAA+GGG | 0.652441 | 5.3:-6384856 | None:intergenic |
| AGCACCCTGAAACATTGCCG+CGG | 0.662260 | 5.3:-6384824 | None:intergenic |
| TTTGACCTTGTGTTTCGCTG+TGG | 0.664849 | 5.3:+6384552 | MS.gene09718:CDS |
| CAATGTTGAGAAGGACATGG+AGG | 0.708038 | 5.3:-6384597 | None:intergenic |
| AGAGTATTGAAATTCCATCG+AGG | 0.736875 | 5.3:-6384101 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATAATATAATTTTAGTTT+TGG | + | chr5.3:6385342-6385361 | MS.gene09718:intron | 10.0% |
| !! | AATTAAGTTAATGAAATCAT+TGG | + | chr5.3:6384440-6384459 | MS.gene09718:intron | 15.0% |
| !! | ATAAAAATAATGAAACAAAC+AGG | - | chr5.3:6384770-6384789 | None:intergenic | 15.0% |
| !!! | AAAGAATTAGCAATATTTTT+AGG | - | chr5.3:6385246-6385265 | None:intergenic | 15.0% |
| !!! | AAGAATTAGCAATATTTTTA+GGG | - | chr5.3:6385245-6385264 | None:intergenic | 15.0% |
| !!! | TGTTTGTTTCATTATTTTTA+TGG | + | chr5.3:6384769-6384788 | MS.gene09718:intron | 15.0% |
| !!! | TTTGTTTTTATAATGCTATA+AGG | + | chr5.3:6385632-6385651 | MS.gene09718:intron | 15.0% |
| !! | GTATACTTTCATTATATTTG+TGG | + | chr5.3:6384891-6384910 | MS.gene09718:intron | 20.0% |
| !! | TATATATGCTACATGAATAT+AGG | - | chr5.3:6384993-6385012 | None:intergenic | 20.0% |
| !! | TCAATCATTTCAAATTTCTA+GGG | + | chr5.3:6384203-6384222 | MS.gene09718:intron | 20.0% |
| !! | TGTGTTGAATTAATTATTGT+AGG | + | chr5.3:6384525-6384544 | MS.gene09718:intron | 20.0% |
| !! | TTCAATCATTTCAAATTTCT+AGG | + | chr5.3:6384202-6384221 | MS.gene09718:intron | 20.0% |
| !!! | AATATAATGAAAGTATACCT+TGG | - | chr5.3:6384889-6384908 | None:intergenic | 20.0% |
| !!! | AATGAAATCATTGGATTTTT+TGG | + | chr5.3:6384449-6384468 | MS.gene09718:intron | 20.0% |
| !!! | ATTGGATTTTTTGGAATAAT+GGG | + | chr5.3:6384458-6384477 | MS.gene09718:intron | 20.0% |
| !!! | GCTAATTCTTTTTTCATTTT+TGG | + | chr5.3:6385255-6385274 | MS.gene09718:intron | 20.0% |
| !!! | TAAGCTAGTTTTGATTATTA+GGG | + | chr5.3:6384406-6384425 | MS.gene09718:intron | 20.0% |
| !!! | TTAAGCTAGTTTTGATTATT+AGG | + | chr5.3:6384405-6384424 | MS.gene09718:intron | 20.0% |
| !!! | TTTCATTTTTGGTTATCAAA+AGG | + | chr5.3:6385266-6385285 | MS.gene09718:intron | 20.0% |
| ! | ATTCAATTCTCTTAATTCGT+CGG | + | chr5.3:6384253-6384272 | MS.gene09718:intron | 25.0% |
| ! | TAATGCTATAAGGTTGTTTA+CGG | + | chr5.3:6385642-6385661 | MS.gene09718:intron | 25.0% |
| ! | TATACCTTATCTTCATCAAA+GGG | + | chr5.3:6385301-6385320 | MS.gene09718:intron | 25.0% |
| ! | TTATACCTTATCTTCATCAA+AGG | + | chr5.3:6385300-6385319 | MS.gene09718:intron | 25.0% |
| !! | TACATTTGCAGTTGTATTTT+GGG | + | chr5.3:6385676-6385695 | MS.gene09718:intron | 25.0% |
| !! | TTTATGACCGGAATAATTTT+TGG | + | chr5.3:6384337-6384356 | MS.gene09718:intron | 25.0% |
| !!! | CATTGGATTTTTTGGAATAA+TGG | + | chr5.3:6384457-6384476 | MS.gene09718:intron | 25.0% |
| !!! | CTAAATTGCTAATTGTTTTG+TGG | + | chr5.3:6385033-6385052 | MS.gene09718:intron | 25.0% |
| !!! | GTTTTTAGTTTTCCTTGTTT+TGG | + | chr5.3:6385197-6385216 | MS.gene09718:intron | 25.0% |
| AAGAACCAAAAGCTACAAAA+AGG | - | chr5.3:6384709-6384728 | None:intergenic | 30.0% | |
| AAGGAAAACTAAAAACCAAG+GGG | - | chr5.3:6385193-6385212 | None:intergenic | 30.0% | |
| ACAAGGAAAACTAAAAACCA+AGG | - | chr5.3:6385195-6385214 | None:intergenic | 30.0% | |
| ACCAAAATAGAACATTCTAG+CGG | - | chr5.3:6385129-6385148 | None:intergenic | 30.0% | |
| ACCAGAGTTAAATTTATGAC+CGG | + | chr5.3:6384325-6384344 | MS.gene09718:intron | 30.0% | |
| ATACCTTATCTTCATCAAAG+GGG | + | chr5.3:6385302-6385321 | MS.gene09718:intron | 30.0% | |
| CAAAATACAACTGCAAATGT+AGG | - | chr5.3:6385677-6385696 | None:intergenic | 30.0% | |
| CAAGGAAAACTAAAAACCAA+GGG | - | chr5.3:6385194-6385213 | None:intergenic | 30.0% | |
| TATTGGACCCTTGATTAATT+CGG | + | chr5.3:6384849-6384868 | MS.gene09718:CDS | 30.0% | |
| TGAATAGCCGAATTAATCAA+GGG | - | chr5.3:6384859-6384878 | None:intergenic | 30.0% | |
| TTGAATAGCCGAATTAATCA+AGG | - | chr5.3:6384860-6384879 | None:intergenic | 30.0% | |
| ! | ATTTGGTTGCAATTTTTGTC+CGG | + | chr5.3:6385805-6385824 | MS.gene09718:CDS | 30.0% |
| ! | CTACATTTGCAGTTGTATTT+TGG | + | chr5.3:6385675-6385694 | MS.gene09718:intron | 30.0% |
| ! | TCATTATATTTGTGGTTTGC+TGG | + | chr5.3:6384899-6384918 | MS.gene09718:intron | 30.0% |
| !! | TTCTTGAGTTCTTACTTTTG+TGG | + | chr5.3:6385595-6385614 | MS.gene09718:intron | 30.0% |
| AAAGTGCAACCACATAAGAA+TGG | - | chr5.3:6385521-6385540 | None:intergenic | 35.0% | |
| AAATGAACTGAAGATGATGC+TGG | - | chr5.3:6385398-6385417 | None:intergenic | 35.0% | |
| AGCGTGACCAAAAATTATTC+CGG | - | chr5.3:6384347-6384366 | None:intergenic | 35.0% | |
| CAAATCAGTAAACAAGGTCA+GGG | - | chr5.3:6385790-6385809 | None:intergenic | 35.0% | |
| GAAATCCATACCTCTTCAAA+AGG | - | chr5.3:6384682-6384701 | None:intergenic | 35.0% | |
| GTGGTCATTGAATCTCATAA+GGG | + | chr5.3:6384964-6384983 | MS.gene09718:intron | 35.0% | |
| TACCTTATCTTCATCAAAGG+GGG | + | chr5.3:6385303-6385322 | MS.gene09718:intron | 35.0% | |
| TCCGGTCATAAATTTAACTC+TGG | - | chr5.3:6384329-6384348 | None:intergenic | 35.0% | |
| TGCAACCAAATCAGTAAACA+AGG | - | chr5.3:6385796-6385815 | None:intergenic | 35.0% | |
| TGTCGCAAAGTTTGATTATG+TGG | + | chr5.3:6384945-6384964 | MS.gene09718:intron | 35.0% | |
| TGTGGTCATTGAATCTCATA+AGG | + | chr5.3:6384963-6384982 | MS.gene09718:intron | 35.0% | |
| ! | AAAGAGGTTGACTTTGTTGA+TGG | + | chr5.3:6384801-6384820 | MS.gene09718:CDS | 35.0% |
| ! | CTGTTCCTTTTTGTAGCTTT+TGG | + | chr5.3:6384701-6384720 | MS.gene09718:intron | 35.0% |
| ! | TCCGCTAGAATGTTCTATTT+TGG | + | chr5.3:6385125-6385144 | MS.gene09718:intron | 35.0% |
| !! | AGAGTATTGAAATTCCATCG+AGG | - | chr5.3:6384104-6384123 | None:intergenic | 35.0% |
| !!! | CTTAATTCGTCGGTTTTCTA+GGG | + | chr5.3:6384263-6384282 | MS.gene09718:intron | 35.0% |
| !!! | GTAGCTTTTGGTTCTTTTCA+TGG | + | chr5.3:6384713-6384732 | MS.gene09718:intron | 35.0% |
| !!! | TCTTAATTCGTCGGTTTTCT+AGG | + | chr5.3:6384262-6384281 | MS.gene09718:intron | 35.0% |
| !!! | TTTTAGGGTGTGAAAAGAGA+GGG | - | chr5.3:6385230-6385249 | None:intergenic | 35.0% |
| !!! | TTTTTAGGGTGTGAAAAGAG+AGG | - | chr5.3:6385231-6385250 | None:intergenic | 35.0% |
| AATGGCTCTCGTTAAGTTTG+AGG | + | chr5.3:6385564-6385583 | MS.gene09718:CDS | 40.0% | |
| ATCCATACCTCTTCAAAAGG+AGG | - | chr5.3:6384679-6384698 | None:intergenic | 40.0% | |
| ATCTTCATCAAAGGGGGAAA+AGG | + | chr5.3:6385309-6385328 | MS.gene09718:intron | 40.0% | |
| CACGCAAGAAATAGTTGAGA+AGG | + | chr5.3:6385731-6385750 | MS.gene09718:CDS | 40.0% | |
| CCAAATCAGTAAACAAGGTC+AGG | - | chr5.3:6385791-6385810 | None:intergenic | 40.0% | |
| CGTTCAGAATCATCTCAAAC+AGG | + | chr5.3:6384151-6384170 | MS.gene09718:CDS | 40.0% | |
| GAATACCACCAATGTTGAGA+AGG | - | chr5.3:6384609-6384628 | None:intergenic | 40.0% | |
| TGAAGATGATGCTGGAACAA+TGG | - | chr5.3:6385390-6385409 | None:intergenic | 40.0% | |
| TTCCCCCTTTGATGAAGATA+AGG | - | chr5.3:6385308-6385327 | None:intergenic | 40.0% | |
| TTTATGGTATGCAGCGAAAG+AGG | + | chr5.3:6384785-6384804 | MS.gene09718:intron | 40.0% | |
| ! | ATAGTTGAGAAGGCACACTT+TGG | + | chr5.3:6385741-6385760 | MS.gene09718:CDS | 40.0% |
| ! | ATGTTTCAGGGTGCTTCTAT+TGG | + | chr5.3:6384832-6384851 | MS.gene09718:CDS | 40.0% |
| ! | CCTGACCTTGTTTACTGATT+TGG | + | chr5.3:6385788-6385807 | MS.gene09718:CDS | 40.0% |
| ! | GTTTGAGATGATTCTGAACG+CGG | - | chr5.3:6384151-6384170 | None:intergenic | 40.0% |
| ! | TTTGAGATGATTCTGAACGC+GGG | - | chr5.3:6384150-6384169 | None:intergenic | 40.0% |
| !! | GCAGTTGTATTTTGGGCTTT+TGG | + | chr5.3:6385683-6385702 | MS.gene09718:intron | 40.0% |
| !!! | TTTGGGCTTTTGGTGTTTGT+GGG | + | chr5.3:6385693-6385712 | MS.gene09718:CDS | 40.0% |
| !!! | TTTTGGGCTTTTGGTGTTTG+TGG | + | chr5.3:6385692-6385711 | MS.gene09718:CDS | 40.0% |
| AATTCCCACACACGCAATTG+TGG | - | chr5.3:6384635-6384654 | None:intergenic | 45.0% | |
| AGCCATTGAACCTCCAAAGA+TGG | - | chr5.3:6385551-6385570 | None:intergenic | 45.0% | |
| CAATGTTGAGAAGGACATGG+AGG | - | chr5.3:6384600-6384619 | None:intergenic | 45.0% | |
| CACCAATGTTGAGAAGGACA+TGG | - | chr5.3:6384603-6384622 | None:intergenic | 45.0% | |
| CACTTTGCTTCTGCCATCTT+TGG | + | chr5.3:6385535-6385554 | MS.gene09718:CDS | 45.0% | |
| CATGTCCTTCTCAACATTGG+TGG | + | chr5.3:6384601-6384620 | MS.gene09718:CDS | 45.0% | |
| CGTGTGTGGGAATTAGTGTT+TGG | + | chr5.3:6384641-6384660 | MS.gene09718:CDS | 45.0% | |
| CTCCATGTCCTTCTCAACAT+TGG | + | chr5.3:6384598-6384617 | MS.gene09718:CDS | 45.0% | |
| CTGGGTTGTCCATTCTTATG+TGG | + | chr5.3:6385509-6385528 | MS.gene09718:CDS | 45.0% | |
| CTTACCACAATTGCGTGTGT+GGG | + | chr5.3:6384628-6384647 | MS.gene09718:CDS | 45.0% | |
| GCGGATGGCTTAGCTAATAT+CGG | + | chr5.3:6385086-6385105 | MS.gene09718:intron | 45.0% | |
| TCATCAAAGGGGGAAAAGGT+GGG | + | chr5.3:6385313-6385332 | MS.gene09718:intron | 45.0% | |
| TCTTACCACAATTGCGTGTG+TGG | + | chr5.3:6384627-6384646 | MS.gene09718:CDS | 45.0% | |
| TCTTCGATTCAACACCTCGA+TGG | + | chr5.3:6384087-6384106 | MS.gene09718:CDS | 45.0% | |
| TTCATCAAAGGGGGAAAAGG+TGG | + | chr5.3:6385312-6385331 | MS.gene09718:intron | 45.0% | |
| TTCATTTGTCGCAACTGCCT+TGG | + | chr5.3:6385411-6385430 | MS.gene09718:CDS | 45.0% | |
| TTGAGATGATTCTGAACGCG+GGG | - | chr5.3:6384149-6384168 | None:intergenic | 45.0% | |
| TTTGACCTTGTGTTTCGCTG+TGG | + | chr5.3:6384552-6384571 | MS.gene09718:CDS | 45.0% | |
| TTTGCTTCTGCCATCTTTGG+AGG | + | chr5.3:6385538-6385557 | MS.gene09718:CDS | 45.0% | |
| TTTGTGTGAAGCCAACCAAG+TGG | + | chr5.3:6385064-6385083 | MS.gene09718:intron | 45.0% | |
| ! | TGCCATCTTTGGAGGTTCAA+TGG | + | chr5.3:6385546-6385565 | MS.gene09718:CDS | 45.0% |
| !! | CACCTCCTTTTGAAGAGGTA+TGG | + | chr5.3:6384674-6384693 | MS.gene09718:intron | 45.0% |
| !! | CTCAACACCTCCTTTTGAAG+AGG | + | chr5.3:6384669-6384688 | MS.gene09718:CDS | 45.0% |
| !! | TTGGTGGCTTGGTTTCTTCT+GGG | + | chr5.3:6385491-6385510 | MS.gene09718:CDS | 45.0% |
| !! | TTGTGGTTTGCTGGTGCATT+GGG | + | chr5.3:6384908-6384927 | MS.gene09718:intron | 45.0% |
| !! | TTTGTGGTTTGCTGGTGCAT+TGG | + | chr5.3:6384907-6384926 | MS.gene09718:intron | 45.0% |
| !!! | ATATATCTTTTTTTTTTTTT+TGG | - | chr5.3:6384375-6384394 | None:intergenic | 5.0% |
| AAACCAAGCCACCAAGGTAG+AGG | - | chr5.3:6385486-6385505 | None:intergenic | 50.0% | |
| CAGAAGAAACCAAGCCACCA+AGG | - | chr5.3:6385492-6385511 | None:intergenic | 50.0% | |
| CATCAAAGGGGGAAAAGGTG+GGG | + | chr5.3:6385314-6385333 | MS.gene09718:intron | 50.0% | |
| CGGCTATTCAAGTCGATCCA+AGG | + | chr5.3:6384869-6384888 | MS.gene09718:CDS | 50.0% | |
| GAGGGCTAAACGCCAAAACA+AGG | - | chr5.3:6385212-6385231 | None:intergenic | 50.0% | |
| TCAGCTGTTCAGTTTCCCCT+TGG | + | chr5.3:6385175-6385194 | MS.gene09718:intron | 50.0% | |
| ! | AGCTTTGGTTGCTAAGCGCA+GGG | + | chr5.3:6385456-6385475 | MS.gene09718:CDS | 50.0% |
| ! | CTTGGCTTTCGGGTGTTTCT+CGG | + | chr5.3:6385429-6385448 | MS.gene09718:CDS | 50.0% |
| ! | TTGGCTTTCGGGTGTTTCTC+GGG | + | chr5.3:6385430-6385449 | MS.gene09718:CDS | 50.0% |
| !! | CTTGGTGGCTTGGTTTCTTC+TGG | + | chr5.3:6385490-6385509 | MS.gene09718:CDS | 50.0% |
| !! | GTTGACTTTGTTGATGGCCG+CGG | + | chr5.3:6384807-6384826 | MS.gene09718:CDS | 50.0% |
| !! | TGTGGTTTGCTGGTGCATTG+GGG | + | chr5.3:6384909-6384928 | MS.gene09718:intron | 50.0% |
| AGCACCCTGAAACATTGCCG+CGG | - | chr5.3:6384827-6384846 | None:intergenic | 55.0% | |
| AGCCACCACAGCGAAACACA+AGG | - | chr5.3:6384560-6384579 | None:intergenic | 55.0% | |
| ATGGCCGCGGCAATGTTTCA+GGG | + | chr5.3:6384820-6384839 | MS.gene09718:CDS | 55.0% | |
| CGAGAAACACCCGAAAGCCA+AGG | - | chr5.3:6385431-6385450 | None:intergenic | 55.0% | |
| GACCTTGTGTTTCGCTGTGG+TGG | + | chr5.3:6384555-6384574 | MS.gene09718:CDS | 55.0% | |
| GTGTGAAGCCAACCAAGTGG+CGG | + | chr5.3:6385067-6385086 | MS.gene09718:intron | 55.0% | |
| GTGTTTCTCGGGAGCAGCTT+TGG | + | chr5.3:6385441-6385460 | MS.gene09718:CDS | 55.0% | |
| TAAGCCATCCGCCACTTGGT+TGG | - | chr5.3:6385078-6385097 | None:intergenic | 55.0% | |
| TAGCTAAGCCATCCGCCACT+TGG | - | chr5.3:6385082-6385101 | None:intergenic | 55.0% | |
| TGCTGGTGCATTGGGGTCTT+TGG | + | chr5.3:6384916-6384935 | MS.gene09718:intron | 55.0% | |
| ! | AGGGGGAAAAGGTGGGGTTT+TGG | + | chr5.3:6385320-6385339 | MS.gene09718:intron | 55.0% |
| ! | CAGCTTTGGTTGCTAAGCGC+AGG | + | chr5.3:6385455-6385474 | MS.gene09718:CDS | 55.0% |
| ! | GTACCTCTACCTTGGTGGCT+TGG | + | chr5.3:6385480-6385499 | MS.gene09718:CDS | 55.0% |
| ! | GTCGCAACTGCCTTGGCTTT+CGG | + | chr5.3:6385418-6385437 | MS.gene09718:CDS | 55.0% |
| ! | TCGCAACTGCCTTGGCTTTC+GGG | + | chr5.3:6385419-6385438 | MS.gene09718:CDS | 55.0% |
| !! | AGGGAGTACCTCTACCTTGG+TGG | + | chr5.3:6385475-6385494 | MS.gene09718:CDS | 55.0% |
| GATGGCCGCGGCAATGTTTC+AGG | + | chr5.3:6384819-6384838 | MS.gene09718:CDS | 60.0% | |
| GCTGTGGTGGCTGCTTCTGT+TGG | + | chr5.3:6384568-6384587 | MS.gene09718:CDS | 60.0% | |
| ! | GAAGCCAACCAAGTGGCGGA+TGG | + | chr5.3:6385071-6385090 | MS.gene09718:intron | 60.0% |
| !! | CGCAGGGAGTACCTCTACCT+TGG | + | chr5.3:6385472-6385491 | MS.gene09718:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 6384068 | 6385842 | 6384068 | ID=MS.gene09718 |
| chr5.3 | mRNA | 6384068 | 6385842 | 6384068 | ID=MS.gene09718.t1;Parent=MS.gene09718 |
| chr5.3 | exon | 6384068 | 6384172 | 6384068 | ID=MS.gene09718.t1.exon1;Parent=MS.gene09718.t1 |
| chr5.3 | CDS | 6384068 | 6384172 | 6384068 | ID=cds.MS.gene09718.t1;Parent=MS.gene09718.t1 |
| chr5.3 | exon | 6384547 | 6384690 | 6384547 | ID=MS.gene09718.t1.exon2;Parent=MS.gene09718.t1 |
| chr5.3 | CDS | 6384547 | 6384690 | 6384547 | ID=cds.MS.gene09718.t1;Parent=MS.gene09718.t1 |
| chr5.3 | exon | 6384799 | 6384890 | 6384799 | ID=MS.gene09718.t1.exon3;Parent=MS.gene09718.t1 |
| chr5.3 | CDS | 6384799 | 6384890 | 6384799 | ID=cds.MS.gene09718.t1;Parent=MS.gene09718.t1 |
| chr5.3 | exon | 6385399 | 6385585 | 6385399 | ID=MS.gene09718.t1.exon4;Parent=MS.gene09718.t1 |
| chr5.3 | CDS | 6385399 | 6385585 | 6385399 | ID=cds.MS.gene09718.t1;Parent=MS.gene09718.t1 |
| chr5.3 | exon | 6385687 | 6385842 | 6385687 | ID=MS.gene09718.t1.exon5;Parent=MS.gene09718.t1 |
| chr5.3 | CDS | 6385687 | 6385842 | 6385687 | ID=cds.MS.gene09718.t1;Parent=MS.gene09718.t1 |
| Gene Sequence |
| Protein sequence |
