AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055549


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055549.t1 MTR_1g082550 96.923 325 9 1 1 325 49 372 0.0 643
MS.gene055549.t1 MTR_7g113800 65.758 330 93 8 1 324 44 359 1.09e-146 417
MS.gene055549.t1 MTR_3g099650 42.500 320 164 8 1 310 59 368 2.59e-70 223
MS.gene055549.t1 MTR_5g064990 39.385 325 181 6 1 321 64 376 8.63e-60 196
MS.gene055549.t1 MTR_5g064980 43.262 282 139 7 1 262 54 334 4.77e-59 194
MS.gene055549.t1 MTR_6g055030 37.069 232 139 2 1 232 51 275 1.59e-43 152
MS.gene055549.t1 MTR_3g086730 36.574 216 114 7 1 215 1 194 9.28e-37 132
MS.gene055549.t1 MTR_3g086700 32.877 219 116 4 1 219 1 188 6.04e-36 128
MS.gene055549.t1 MTR_5g076990 36.207 232 126 8 6 225 39 260 7.60e-30 115
MS.gene055549.t1 MTR_8g066740 37.083 240 121 9 1 225 35 259 3.12e-29 114
MS.gene055549.t1 MTR_3g110190 41.600 125 65 3 2 121 13 134 2.44e-28 112
MS.gene055549.t1 MTR_2g055790 40.157 127 64 2 1 127 34 148 3.80e-28 108
MS.gene055549.t1 MTR_6g055030 39.474 152 88 1 81 232 97 244 5.99e-28 110
MS.gene055549.t1 MTR_6g087150 31.429 175 100 6 3 165 42 208 1.83e-24 102
MS.gene055549.t1 MTR_4g120270 47.423 97 45 2 48 143 78 169 7.11e-24 99.0
MS.gene055549.t1 MTR_2g436100 57.692 78 30 1 49 126 92 166 1.50e-23 98.6
MS.gene055549.t1 MTR_4g106680 36.957 138 69 3 1 124 44 177 6.41e-23 97.1
MS.gene055549.t1 MTR_3g100400 50.000 82 38 1 46 127 126 204 1.01e-22 98.2
MS.gene055549.t1 MTR_1g100737 43.158 95 50 2 34 124 74 168 1.38e-22 93.6
MS.gene055549.t1 MTR_4g129420 55.263 76 32 1 50 125 117 190 2.43e-22 97.8
MS.gene055549.t1 MTR_5g066250 41.284 109 58 3 21 127 104 208 2.96e-22 97.1
MS.gene055549.t1 MTR_5g064890 38.889 144 64 6 3 125 60 200 7.65e-22 94.7
MS.gene055549.t1 MTR_2g090950 38.614 101 59 1 47 144 88 188 1.54e-20 89.0
MS.gene055549.t1 MTR_7g116220 35.115 131 75 2 7 127 17 147 3.75e-20 86.7
MS.gene055549.t1 MTR_1g074190 48.101 79 38 1 49 124 98 176 4.49e-20 89.7
MS.gene055549.t1 MTR_1g043410 33.083 133 75 2 1 121 35 165 5.92e-20 89.0
MS.gene055549.t1 MTR_3g464780 44.944 89 48 1 44 131 96 184 7.56e-20 87.8
MS.gene055549.t1 MTR_7g117540 38.710 124 66 2 1 124 33 146 1.51e-19 87.4
MS.gene055549.t1 MTR_3g094000 35.156 128 75 3 3 128 47 168 2.14e-19 84.3
MS.gene055549.t1 MTR_2g009310 52.439 82 30 2 50 128 135 210 2.58e-19 88.2
MS.gene055549.t1 MTR_5g030010 33.333 135 73 3 4 124 62 193 6.31e-19 86.7
MS.gene055549.t1 MTR_5g034790 35.616 146 71 4 1 127 49 190 1.30e-18 85.9
MS.gene055549.t1 MTR_8g089880 48.148 81 39 2 50 130 127 204 1.49e-18 84.3
MS.gene055549.t1 MTR_1g056350 39.241 79 48 0 50 128 74 152 1.94e-18 81.6
MS.gene055549.t1 MTR_8g009190 30.000 150 100 3 1 149 30 175 1.94e-18 84.7
MS.gene055549.t1 MTR_4g093830 43.878 98 52 2 50 147 126 220 2.14e-18 85.1
MS.gene055549.t1 MTR_2g090905 41.250 80 44 1 51 127 40 119 3.19e-18 79.7
MS.gene055549.t1 MTR_8g066780 32.117 137 84 4 4 133 62 196 3.68e-18 84.3
MS.gene055549.t1 MTR_4g056590 44.156 77 37 1 49 125 99 169 3.69e-18 81.6
MS.gene055549.t1 MTR_8g063660 48.684 76 34 2 50 124 68 139 4.50e-18 84.0
MS.gene055549.t1 MTR_8g093010 36.000 125 69 3 1 125 67 180 9.16e-18 80.9
MS.gene055549.t1 MTR_6g007737 34.058 138 73 4 1 124 71 204 1.33e-17 83.2
MS.gene055549.t1 MTR_2g044570 46.479 71 38 0 60 130 64 134 1.65e-17 81.6
MS.gene055549.t1 MTR_5g024730 32.031 128 66 4 1 121 34 147 1.82e-17 80.1
MS.gene055549.t1 MTR_5g026720 43.182 88 38 2 53 133 65 147 2.93e-17 78.2
MS.gene055549.t1 MTR_3g091620 46.053 76 38 1 50 125 101 173 3.37e-17 81.6
MS.gene055549.t1 MTR_8g073120 34.351 131 61 5 1 122 27 141 3.73e-17 79.0
MS.gene055549.t1 MTR_1g070140 30.075 133 80 4 3 124 45 175 3.79e-17 81.3
MS.gene055549.t1 MTR_5g026730 36.029 136 70 5 4 128 14 143 4.33e-17 78.2
MS.gene055549.t1 MTR_7g116180 44.872 78 43 0 47 124 64 141 5.89e-17 77.8
MS.gene055549.t1 MTR_8g023400 47.368 76 35 2 50 125 92 162 6.78e-17 80.5
MS.gene055549.t1 MTR_1g070425 44.872 78 43 0 47 124 65 142 7.82e-17 77.4
MS.gene055549.t1 MTR_8g092840 34.109 129 74 3 1 125 65 186 9.93e-17 78.2
MS.gene055549.t1 MTR_8g092960 43.038 79 43 1 47 125 100 176 1.10e-16 78.2
MS.gene055549.t1 MTR_1g090480 30.579 121 82 2 8 126 29 149 1.18e-16 76.6
MS.gene055549.t1 MTR_6g007680 31.496 127 76 3 6 132 4 119 1.35e-16 76.3
MS.gene055549.t1 MTR_3g071300 27.344 128 92 1 3 129 29 156 1.74e-16 76.3
MS.gene055549.t1 MTR_3g095560 34.109 129 72 5 1 125 63 182 1.77e-16 77.8
MS.gene055549.t1 MTR_1g492830 32.051 156 87 6 2 140 5 158 2.26e-16 77.4
MS.gene055549.t1 MTR_5g092790 40.541 74 43 1 48 121 155 227 2.51e-16 77.4
MS.gene055549.t1 MTR_7g079280 39.024 82 49 1 47 128 77 157 2.60e-16 76.3
MS.gene055549.t1 MTR_4g063070 35.052 97 52 2 29 125 297 382 2.76e-16 79.3
MS.gene055549.t1 MTR_7g096690 29.560 159 92 6 1 144 13 166 5.21e-16 77.8
MS.gene055549.t1 MTR_5g082940 33.913 115 65 3 11 124 44 148 5.44e-16 75.1
MS.gene055549.t1 MTR_3g012550 31.618 136 82 5 1 128 25 157 6.51e-16 75.1
MS.gene055549.t1 MTR_5g071930 41.860 86 41 2 49 134 65 141 7.16e-16 75.1
MS.gene055549.t1 MTR_8g071815 40.217 92 54 1 76 167 87 177 8.22e-16 74.7
MS.gene055549.t1 MTR_7g079290 36.145 83 52 1 45 126 120 202 1.55e-15 74.7
MS.gene055549.t1 MTR_5g092750 37.037 81 50 1 45 125 152 231 1.66e-15 75.1
MS.gene055549.t1 MTR_1g090460 40.789 76 44 1 58 132 73 148 2.42e-15 72.8
MS.gene055549.t1 MTR_3g078450 44.156 77 42 1 48 124 74 149 2.76e-15 73.9
MS.gene055549.t1 MTR_7g073200 35.000 140 75 6 1 135 34 162 2.88e-15 73.2
MS.gene055549.t1 MTR_8g032690 39.130 92 54 2 79 170 19 108 2.98e-15 71.2
MS.gene055549.t1 MTR_7g108855 40.789 76 44 1 51 126 67 141 3.15e-15 73.6
MS.gene055549.t1 MTR_8g092930 32.031 128 77 3 1 125 65 185 4.27e-15 73.6
MS.gene055549.t1 MTR_8g092985 40.260 77 44 1 49 125 110 184 7.19e-15 72.8
MS.gene055549.t1 MTR_3g078470 44.156 77 42 1 48 124 74 149 9.73e-15 72.4
MS.gene055549.t1 MTR_7g076250 31.746 126 81 3 50 173 63 185 9.97e-15 72.0
MS.gene055549.t1 MTR_2g096350 38.889 72 43 1 51 122 108 178 1.01e-14 72.4
MS.gene055549.t1 MTR_8g092970 33.858 127 67 5 6 125 61 177 1.09e-14 72.4
MS.gene055549.t1 MTR_8g019710 34.483 116 64 4 47 160 27 132 1.15e-14 70.5
MS.gene055549.t1 MTR_8g028465 40.506 79 42 2 50 128 90 163 1.22e-14 72.0
MS.gene055549.t1 MTR_3g081030 49.180 61 31 0 79 139 119 179 1.32e-14 72.0
MS.gene055549.t1 MTR_2g041200 34.921 126 77 4 4 126 33 156 1.56e-14 71.2
MS.gene055549.t1 MTR_4g030070 33.019 106 67 1 50 155 85 186 1.78e-14 72.0
MS.gene055549.t1 MTR_3g116000 32.867 143 78 5 1 136 30 161 2.28e-14 70.9
MS.gene055549.t1 MTR_7g116200 36.957 92 52 2 32 122 50 136 3.34e-14 70.1
MS.gene055549.t1 MTR_2g035800 36.957 92 53 2 44 135 70 156 6.49e-14 68.9
MS.gene055549.t1 MTR_3g086680 47.887 71 26 3 60 122 22 89 8.13e-14 67.4
MS.gene055549.t1 MTR_3g114500 50.000 64 28 2 68 127 56 119 1.06e-13 67.4
MS.gene055549.t1 MTR_5g022920 38.462 78 47 1 47 124 158 234 1.96e-13 69.3
MS.gene055549.t1 MTR_8g092990 43.478 69 33 2 59 125 123 187 2.15e-13 68.9
MS.gene055549.t1 MTR_8g099515 42.667 75 40 2 48 121 307 379 3.03e-13 70.5
MS.gene055549.t1 MTR_4g022410 33.065 124 73 3 1 124 45 158 3.94e-13 67.4
MS.gene055549.t1 MTR_8g027745 54.000 50 23 0 79 128 314 363 6.35e-13 69.3
MS.gene055549.t1 MTR_7g116210 40.506 79 41 2 45 122 5 78 7.40e-13 64.7
MS.gene055549.t1 MTR_1g026070 53.061 49 23 0 78 126 70 118 9.39e-13 65.1
MS.gene055549.t1 MTR_7g117350 38.947 95 53 3 46 137 286 378 1.07e-12 68.6
MS.gene055549.t1 MTR_5g009200 43.590 78 31 2 50 121 322 392 1.25e-12 68.6
MS.gene055549.t1 MTR_7g117350 38.947 95 53 3 46 137 278 370 1.33e-12 68.2
MS.gene055549.t1 MTR_8g072020 38.356 73 41 3 54 125 383 452 1.99e-12 68.2
MS.gene055549.t1 MTR_8g072020 38.356 73 41 3 54 125 422 491 2.10e-12 68.2
MS.gene055549.t1 MTR_6g007670 33.333 93 55 3 40 132 1 86 2.33e-12 66.2
MS.gene055549.t1 MTR_6g007670 31.765 85 54 2 49 132 144 225 9.52e-11 61.6
MS.gene055549.t1 MTR_5g009210 43.590 78 31 2 50 121 287 357 3.90e-12 66.6
MS.gene055549.t1 MTR_2g079320 37.313 67 40 1 60 124 138 204 4.37e-12 64.7
MS.gene055549.t1 MTR_3g091200 34.524 84 54 1 39 122 292 374 7.49e-12 65.9
MS.gene055549.t1 MTR_4g094725 37.179 78 48 1 44 121 72 148 8.58e-12 62.8
MS.gene055549.t1 MTR_8g027980 38.889 72 40 2 56 125 96 165 9.48e-12 64.7
MS.gene055549.t1 MTR_8g098770 40.299 67 39 1 66 131 73 139 9.98e-12 62.8
MS.gene055549.t1 MTR_4g108830 47.826 46 24 0 79 124 146 191 1.02e-11 63.5
MS.gene055549.t1 MTR_5g009190 42.308 78 32 2 50 121 266 336 1.05e-11 65.5
MS.gene055549.t1 MTR_3g087900 50.000 50 23 2 78 126 68 116 1.07e-11 62.8
MS.gene055549.t1 MTR_4g108830 47.826 46 24 0 79 124 174 219 1.13e-11 63.9
MS.gene055549.t1 MTR_4g077570 45.283 53 25 2 77 126 9 60 1.17e-11 60.5
MS.gene055549.t1 MTR_7g059360 36.842 76 47 1 56 131 136 210 1.56e-11 63.5
MS.gene055549.t1 MTR_3g078120 34.409 93 53 2 30 122 44 128 1.79e-11 62.0
MS.gene055549.t1 MTR_8g099495 53.488 43 20 0 79 121 347 389 2.19e-11 64.7
MS.gene055549.t1 MTR_8g074900 51.111 45 22 0 77 121 178 222 2.39e-11 63.2
MS.gene055549.t1 MTR_5g010100 46.000 50 26 1 79 127 81 130 3.08e-11 60.8
MS.gene055549.t1 MTR_3g078540 37.349 83 48 2 42 122 42 122 4.40e-11 60.8
MS.gene055549.t1 MTR_1g090450 30.469 128 80 4 1 121 24 149 6.39e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055549.t1 AT3G05200 50.000 314 126 9 1 311 49 334 5.12e-84 259
MS.gene055549.t1 AT1G72200 42.331 326 161 9 1 319 63 368 6.87e-74 233
MS.gene055549.t1 AT5G27420 44.509 346 117 12 1 311 45 350 6.08e-73 230
MS.gene055549.t1 AT1G22500 40.000 330 179 8 2 325 40 356 1.88e-65 211
MS.gene055549.t1 AT4G09120 42.667 300 133 13 4 298 51 316 7.57e-54 180
MS.gene055549.t1 AT1G35330 41.241 274 140 7 2 267 49 309 4.21e-53 177
MS.gene055549.t1 AT4G40070 38.019 313 144 13 4 307 49 320 1.02e-52 176
MS.gene055549.t1 AT2G35000 42.449 245 116 8 1 230 51 285 3.04e-51 174
MS.gene055549.t1 AT4G09130 43.952 248 112 7 35 271 76 307 5.54e-51 172
MS.gene055549.t1 AT2G34990 42.857 238 99 8 3 229 38 249 1.38e-49 168
MS.gene055549.t1 AT2G34990 42.857 238 99 8 3 229 16 227 1.50e-49 167
MS.gene055549.t1 AT4G09110 36.364 253 89 6 46 298 90 270 1.59e-40 144
MS.gene055549.t1 AT4G17920 31.206 282 165 8 1 268 23 289 8.62e-36 131
MS.gene055549.t1 AT5G46650 33.471 242 131 6 1 229 25 249 1.17e-35 130
MS.gene055549.t1 AT2G27940 37.410 139 67 3 1 123 50 184 8.35e-28 108
MS.gene055549.t1 AT4G09100 56.098 82 36 0 45 126 51 132 1.71e-27 104
MS.gene055549.t1 AT2G20030 41.007 139 76 3 1 137 48 182 4.93e-25 104
MS.gene055549.t1 AT3G16720 38.411 151 70 3 1 137 31 172 3.42e-24 100
MS.gene055549.t1 AT5G05810 39.597 149 74 4 46 194 116 248 5.62e-24 101
MS.gene055549.t1 AT2G18650 40.708 113 65 1 13 125 62 172 1.20e-22 98.2
MS.gene055549.t1 AT5G17600 36.641 131 65 4 4 122 61 185 3.06e-22 96.3
MS.gene055549.t1 AT2G35420 32.889 225 98 10 1 209 21 208 8.60e-22 92.8
MS.gene055549.t1 AT4G28890 49.398 83 39 1 50 132 97 176 2.60e-21 94.4
MS.gene055549.t1 AT1G72220 40.146 137 60 6 4 124 92 222 6.70e-21 92.8
MS.gene055549.t1 AT1G04360 33.099 142 71 3 1 124 44 179 2.15e-20 91.3
MS.gene055549.t1 AT4G15975 46.250 80 39 1 50 129 51 126 3.99e-20 87.8
MS.gene055549.t1 AT1G32361 36.145 166 84 7 50 208 130 280 5.76e-20 89.4
MS.gene055549.t1 AT4G17905 31.677 161 80 5 4 141 65 218 6.56e-20 89.0
MS.gene055549.t1 AT4G30400 52.778 72 32 1 50 121 107 176 7.76e-20 90.1
MS.gene055549.t1 AT1G23980 34.043 141 74 3 1 125 53 190 8.21e-20 89.4
MS.gene055549.t1 AT3G62690 34.132 167 90 6 1 159 30 184 8.69e-20 87.4
MS.gene055549.t1 AT4G17905 31.677 161 80 5 4 141 91 244 1.15e-19 88.6
MS.gene055549.t1 AT5G43420 29.703 202 114 5 1 176 37 236 1.46e-19 88.6
MS.gene055549.t1 AT3G18930 50.602 83 34 2 50 125 120 202 2.20e-19 88.6
MS.gene055549.t1 AT3G18930 50.602 83 34 2 50 125 120 202 2.20e-19 88.6
MS.gene055549.t1 AT3G18930 50.602 83 34 2 50 125 120 202 2.20e-19 88.6
MS.gene055549.t1 AT4G33565 53.947 76 32 2 50 125 191 263 2.66e-19 87.8
MS.gene055549.t1 AT2G42360 33.871 124 74 2 5 128 42 157 3.53e-19 85.5
MS.gene055549.t1 AT5G40250 31.765 170 92 5 3 152 47 212 3.98e-19 87.4
MS.gene055549.t1 AT3G48030 49.333 75 36 1 50 124 102 174 4.12e-19 85.9
MS.gene055549.t1 AT4G10150 36.765 136 71 5 2 128 31 160 4.41e-19 85.1
MS.gene055549.t1 AT3G48030 49.333 75 36 1 50 124 180 252 4.69e-19 87.0
MS.gene055549.t1 AT5G05280 34.328 134 64 5 1 125 41 159 8.56e-19 82.8
MS.gene055549.t1 AT3G03550 38.889 108 61 3 51 156 134 238 1.70e-18 85.5
MS.gene055549.t1 AT4G10160 37.500 128 66 4 4 128 30 146 2.75e-18 82.8
MS.gene055549.t1 AT5G10380 44.340 106 44 5 50 150 109 204 4.18e-18 83.6
MS.gene055549.t1 AT5G01880 43.137 102 48 4 24 125 60 151 5.54e-18 80.1
MS.gene055549.t1 AT2G42350 48.718 78 36 2 49 126 74 147 7.27e-18 81.3
MS.gene055549.t1 AT2G46493 37.190 121 73 2 3 121 61 180 1.40e-17 79.7
MS.gene055549.t1 AT1G49200 29.885 174 100 5 6 173 59 216 1.52e-17 80.5
MS.gene055549.t1 AT3G60220 46.575 73 39 0 53 125 91 163 3.52e-17 81.3
MS.gene055549.t1 AT1G49230 31.214 173 102 6 1 173 57 212 4.88e-17 79.0
MS.gene055549.t1 AT2G47560 48.718 78 39 1 49 126 79 155 5.31e-17 79.3
MS.gene055549.t1 AT1G76410 36.220 127 75 4 1 125 28 150 7.52e-17 77.8
MS.gene055549.t1 AT5G57750 38.835 103 53 3 27 123 68 166 8.99e-17 78.2
MS.gene055549.t1 AT3G18773 29.143 175 101 5 6 173 52 210 1.74e-16 77.4
MS.gene055549.t1 AT1G49210 34.127 126 65 3 49 173 107 215 2.41e-16 77.4
MS.gene055549.t1 AT5G07040 31.250 128 83 3 1 127 19 142 2.44e-16 75.5
MS.gene055549.t1 AT1G49220 29.444 180 110 6 1 178 59 223 3.63e-16 77.4
MS.gene055549.t1 AT2G34000 36.441 118 68 3 6 121 21 133 3.68e-16 75.1
MS.gene055549.t1 AT2G25410 38.542 96 57 2 33 126 279 374 4.02e-16 79.0
MS.gene055549.t1 AT3G10910 35.338 133 73 4 1 125 33 160 6.01e-16 75.1
MS.gene055549.t1 AT1G53820 37.647 85 48 2 50 134 95 174 1.06e-15 77.0
MS.gene055549.t1 AT1G72310 38.095 84 48 1 42 125 94 173 1.58e-15 76.6
MS.gene055549.t1 AT3G14320 44.444 72 36 1 50 121 63 130 2.01e-15 74.3
MS.gene055549.t1 AT5G53110 39.167 120 62 5 10 121 256 372 2.85e-15 76.3
MS.gene055549.t1 AT1G20823 33.088 136 71 5 1 125 31 157 3.53e-15 73.6
MS.gene055549.t1 AT2G46160 41.667 84 44 1 50 128 104 187 3.68e-15 73.6
MS.gene055549.t1 AT2G46160 41.667 84 44 1 50 128 104 187 3.68e-15 73.6
MS.gene055549.t1 AT2G17450 32.061 131 75 4 1 126 28 149 3.73e-15 73.2
MS.gene055549.t1 AT3G61550 36.458 96 51 2 50 136 99 193 3.84e-15 73.6
MS.gene055549.t1 AT2G46494 43.038 79 44 1 43 121 281 358 4.18e-15 75.5
MS.gene055549.t1 AT1G28040 44.444 72 39 1 50 121 225 295 4.49e-15 75.1
MS.gene055549.t1 AT5G06490 35.714 84 50 1 50 129 96 179 5.04e-15 72.8
MS.gene055549.t1 AT2G35910 40.506 79 44 1 50 128 121 196 9.29e-15 72.8
MS.gene055549.t1 AT5G42200 56.000 50 22 0 78 127 103 152 2.68e-14 70.1
MS.gene055549.t1 AT2G46495 38.144 97 57 2 34 129 246 340 2.72e-14 73.2
MS.gene055549.t1 AT5G58580 30.709 127 86 1 41 167 102 226 2.76e-14 72.8
MS.gene055549.t1 AT2G46495 38.144 97 57 2 34 129 274 368 3.71e-14 72.8
MS.gene055549.t1 AT4G35480 51.852 54 26 0 73 126 107 160 3.76e-14 70.5
MS.gene055549.t1 AT1G33480 39.474 76 44 1 78 151 99 174 4.28e-14 71.6
MS.gene055549.t1 AT5G47610 40.506 79 45 2 53 131 83 159 2.01e-13 67.8
MS.gene055549.t1 AT4G35840 37.647 85 39 2 47 124 159 236 8.80e-13 67.4
MS.gene055549.t1 AT3G19140 37.662 77 44 1 48 124 52 124 9.50e-13 65.1
MS.gene055549.t1 AT1G74410 36.486 74 44 1 48 121 148 218 1.16e-12 67.0
MS.gene055549.t1 AT5G66070 44.828 58 32 0 67 124 164 221 1.28e-12 66.6
MS.gene055549.t1 AT5G66070 44.828 58 32 0 67 124 164 221 1.28e-12 66.6
MS.gene055549.t1 AT3G11110 28.205 117 81 2 8 124 39 152 1.42e-12 65.1
MS.gene055549.t1 AT5G66070 44.828 58 32 0 67 124 188 245 2.17e-12 66.2
MS.gene055549.t1 AT3G60966 50.943 53 26 0 79 131 62 114 2.78e-12 63.9
MS.gene055549.t1 AT4G17245 33.607 122 76 4 10 130 37 154 4.82e-12 63.9
MS.gene055549.t1 AT2G18670 32.967 91 54 2 45 130 78 166 6.25e-12 63.9
MS.gene055549.t1 AT3G20395 40.789 76 40 3 49 124 146 216 1.01e-11 63.9
MS.gene055549.t1 AT4G24015 54.348 46 21 0 79 124 105 150 1.12e-11 63.2
MS.gene055549.t1 AT2G17730 33.333 78 52 0 47 124 164 241 1.20e-11 64.3
MS.gene055549.t1 AT5G36001 53.488 43 20 0 79 121 264 306 1.43e-11 64.7
MS.gene055549.t1 AT1G35625 31.343 134 76 7 1 132 165 284 1.86e-11 64.3
MS.gene055549.t1 AT1G53010 48.936 47 24 0 78 124 129 175 2.43e-11 62.0
MS.gene055549.t1 AT3G30460 34.343 99 59 4 32 129 54 147 3.05e-11 61.2
MS.gene055549.t1 AT3G30460 34.343 99 59 4 32 129 90 183 3.07e-11 62.0
MS.gene055549.t1 AT2G44578 48.000 50 26 0 79 128 70 119 3.22e-11 60.8
MS.gene055549.t1 AT5G41400 36.765 68 41 1 60 125 86 153 3.27e-11 61.6
MS.gene055549.t1 AT1G26800 41.176 68 38 2 65 132 99 164 5.42e-11 61.6
MS.gene055549.t1 AT4G30370 36.111 72 43 1 50 121 89 157 7.11e-11 60.8

Find 0 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGATTCATAAAATCGGAAA+AGG + 10874:8358-8377 MS.gene055549:CDS 25.0%
! ATTACGATTATTATAGCCAT+CGG - 10874:8157-8176 MS.gene055549:intergenic 25.0%
GCTGTGAAGATTCATAAAAT+CGG + 10874:8352-8371 MS.gene055549:CDS 30.0%
TGAAAAACATGATCACACTT+TGG - 10874:8445-8464 MS.gene055549:intergenic 30.0%
! TTTTGAGCTTCAATATCTTG+TGG - 10874:8583-8602 MS.gene055549:intergenic 30.0%
ACAAATACTACTACAGAACC+CGG + 10874:8837-8856 MS.gene055549:CDS 35.0%
ACAGCTGAGTATTCAAAGAT+CGG - 10874:8337-8356 MS.gene055549:intergenic 35.0%
AGCTTCAATATCTTGTGGTT+CGG - 10874:8578-8597 MS.gene055549:intergenic 35.0%
ATTACATAGAGCTAGAAGCT+TGG + 10874:8861-8880 MS.gene055549:CDS 35.0%
ATTTGTTTCCTCACTTCAAC+CGG - 10874:8823-8842 MS.gene055549:intergenic 35.0%
TCAAAACGAAGCTGTTGAAT+CGG + 10874:8597-8616 MS.gene055549:CDS 35.0%
!! CTTCTAGCTCTATGTAATTC+CGG - 10874:8859-8878 MS.gene055549:intergenic 35.0%
!! TTCTAGCTCTATGTAATTCC+GGG - 10874:8858-8877 MS.gene055549:intergenic 35.0%
AGCCATTCATCAATACACTC+AGG - 10874:8469-8488 MS.gene055549:intergenic 40.0%
CAGCTGAGTATTCAAAGATC+GGG - 10874:8336-8355 MS.gene055549:intergenic 40.0%
GCCATTCATCAATACACTCA+GGG - 10874:8468-8487 MS.gene055549:intergenic 40.0%
GGTTCATGAACATCAAAACG+CGG + 10874:8618-8637 MS.gene055549:CDS 40.0%
! ACCCTGAGTGTATTGATGAA+TGG + 10874:8464-8483 MS.gene055549:CDS 40.0%
! AGCTAATTTGGTTCCTCAAC+CGG + 10874:8519-8538 MS.gene055549:CDS 40.0%
! GAGTGTATTGATGAATGGCT+CGG + 10874:8469-8488 MS.gene055549:CDS 40.0%
!! ACCAAATTAGCTCTGCAAAC+CGG - 10874:8511-8530 MS.gene055549:intergenic 40.0%
!! TGTGGTTCGGTATTAATCGA+CGG - 10874:8565-8584 MS.gene055549:intergenic 40.0%
ACACTGAACGGTTCACTTTG+AGG + 10874:8794-8813 MS.gene055549:CDS 45.0%
ACCGGGGTTTATTATCAGAC+CGG + 10874:8974-8993 MS.gene055549:CDS 45.0%
ACCGGTCTGATAATAAACCC+CGG - 10874:8978-8997 MS.gene055549:intergenic 45.0%
AGAGAAACTAGTTCACGGAG+GGG + 10874:8895-8914 MS.gene055549:CDS 45.0%
ATCGCTGCTCTCTTTCTCAT+GGG + 10874:8181-8200 MS.gene055549:CDS 45.0%
ATGTTGCGTATGCTGTTGGA+AGG - 10874:8244-8263 MS.gene055549:intergenic 45.0%
CAGACTGTGAACCTCTTGTA+CGG - 10874:8711-8730 MS.gene055549:intergenic 45.0%
CATGAACATCAAAACGCGGA+CGG + 10874:8622-8641 MS.gene055549:CDS 45.0%
GAGAGAAACTAGTTCACGGA+GGG + 10874:8894-8913 MS.gene055549:CDS 45.0%
GGGTTTATTATCAGACCGGT+GGG + 10874:8978-8997 MS.gene055549:CDS 45.0%
GTAGTAGAGGGAAGTCTGTA+AGG + 10874:8944-8963 MS.gene055549:CDS 45.0%
GTGGTGAAGGAAGTAGTAGA+GGG + 10874:8932-8951 MS.gene055549:CDS 45.0%
TACATCTGCTTCAGCAGCTA+CGG + 10874:9080-9099 MS.gene055549:CDS 45.0%
TCAATCTACATCCGTCGATG+CGG + 10874:8211-8230 MS.gene055549:CDS 45.0%
TGCCGAGAGAAACTAGTTCA+CGG + 10874:8890-8909 MS.gene055549:CDS 45.0%
TGGCTTACAGTCAACACTTC+TGG - 10874:8673-8692 MS.gene055549:intergenic 45.0%
TTCCAACAGCATACGCAACA+TGG + 10874:8243-8262 MS.gene055549:CDS 45.0%
! CTCCGTGAACTAGTTTCTCT+CGG - 10874:8895-8914 MS.gene055549:intergenic 45.0%
! GCTAATTTGGTTCCTCAACC+GGG + 10874:8520-8539 MS.gene055549:CDS 45.0%
! TAAAATCGGAAAAGGCGCGT+TGG + 10874:8366-8385 MS.gene055549:CDS 45.0%
! TCCGGTTTGCAGAGCTAATT+TGG + 10874:8507-8526 MS.gene055549:CDS 45.0%
!! GTCAACACTTCTGGTTCAGT+TGG - 10874:8664-8683 MS.gene055549:intergenic 45.0%
!! GTGGTTCGGTATTAATCGAC+GGG - 10874:8564-8583 MS.gene055549:intergenic 45.0%
AACAGCATACGCAACATGGC+AGG + 10874:8247-8266 MS.gene055549:CDS 50.0%
AACATGGCAGGAGGTTTAGC+TGG + 10874:8259-8278 MS.gene055549:CDS 50.0%
AACCGGGTGAGAACACTGAA+CGG + 10874:8782-8801 MS.gene055549:CDS 50.0%
AACCGTTCAGTGTTCTCACC+CGG - 10874:8787-8806 MS.gene055549:intergenic 50.0%
ACTACTTCCTTCACCACCAC+CGG - 10874:8929-8948 MS.gene055549:intergenic 50.0%
CAAGAGGTTCACAGTCTGGT+AGG + 10874:8713-8732 MS.gene055549:CDS 50.0%
CATCGCTGCTCTCTTTCTCA+TGG + 10874:8180-8199 MS.gene055549:CDS 50.0%
CGAGAGAAACTAGTTCACGG+AGG + 10874:8893-8912 MS.gene055549:CDS 50.0%
CGGTTCTCATACCACTTGTC+CGG + 10874:8489-8508 MS.gene055549:CDS 50.0%
CGTACAAGAGGTTCACAGTC+TGG + 10874:8709-8728 MS.gene055549:CDS 50.0%
GACGACGCTCTTACAAGGAA+AGG - 10874:9021-9040 MS.gene055549:intergenic 50.0%
GACGCTCTTACAAGGAAAGG+TGG - 10874:9018-9037 MS.gene055549:intergenic 50.0%
GGGGTTTATTATCAGACCGG+TGG + 10874:8977-8996 MS.gene055549:CDS 50.0%
GGTGGTGAAGGAAGTAGTAG+AGG + 10874:8931-8950 MS.gene055549:CDS 50.0%
GTAGAGGGAAGTCTGTAAGG+CGG + 10874:8947-8966 MS.gene055549:CDS 50.0%
GTGAACCTCTTGTACGGTTC+CGG - 10874:8705-8724 MS.gene055549:intergenic 50.0%
TCATCGACGACGCTCTTACA+AGG - 10874:9026-9045 MS.gene055549:intergenic 50.0%
TGCCATGTTGCGTATGCTGT+TGG - 10874:8248-8267 MS.gene055549:intergenic 50.0%
! ATACCGTGAACCGATTCACC+CGG - 10874:8541-8560 MS.gene055549:intergenic 50.0%
!! ACGGTTCACTTTGAGGCTAC+CGG + 10874:8801-8820 MS.gene055549:CDS 50.0%
!! AGACCGGTGGGTTTTTACGA+TGG + 10874:8990-9009 MS.gene055549:CDS 50.0%
!! TTGTAAGAGCGTCGTCGATG+AGG + 10874:9025-9044 MS.gene055549:CDS 50.0%
!! TTTTCGAGGTCTCACTCGAC+CGG + 10874:8745-8764 MS.gene055549:CDS 50.0%
!!! GTAGGCTTCGTTGGTTTTCG+AGG + 10874:8731-8750 MS.gene055549:CDS 50.0%
AAGGTGAATCGCCGCATCGA+CGG - 10874:8225-8244 MS.gene055549:intergenic 55.0%
AGCATACGCAACATGGCAGG+AGG + 10874:8250-8269 MS.gene055549:CDS 55.0%
AGCTCTGCAAACCGGACAAG+TGG - 10874:8503-8522 MS.gene055549:intergenic 55.0%
AGGGAAGTCTGTAAGGCGGT+TGG + 10874:8951-8970 MS.gene055549:CDS 55.0%
AGTCTGTAAGGCGGTTGGAC+CGG + 10874:8956-8975 MS.gene055549:CDS 55.0%
ATCTGCTTCAGCAGCTACGG+CGG + 10874:9083-9102 MS.gene055549:CDS 55.0%
CACAGTCTGGTAGGCTTCGT+TGG + 10874:8722-8741 MS.gene055549:CDS 55.0%
CGGTTGAACCACCGAATGAC+CGG - 10874:8767-8786 MS.gene055549:intergenic 55.0%
CTGAACCGGAACCGTACAAG+AGG + 10874:8697-8716 MS.gene055549:CDS 55.0%
CTGTAAGCCAGACGCTGAAC+CGG + 10874:8683-8702 MS.gene055549:CDS 55.0%
GCGCCATCGTAAAAACCCAC+CGG - 10874:8996-9015 MS.gene055549:intergenic 55.0%
GGTTCCTCAACCGGGTGAAT+CGG + 10874:8528-8547 MS.gene055549:CDS 55.0%
GTCGTCGATGAGGTCACCAA+GGG + 10874:9035-9054 MS.gene055549:CDS 55.0%
GTCTCACTCGACCGGTCATT+CGG + 10874:8753-8772 MS.gene055549:CDS 55.0%
TCACGGAGGGGTTATCGAAC+CGG + 10874:8907-8926 MS.gene055549:CDS 55.0%
! CAACCGGGTGAATCGGTTCA+CGG + 10874:8535-8554 MS.gene055549:CDS 55.0%
! CGGTCATTCGGTGGTTCAAC+CGG + 10874:8765-8784 MS.gene055549:CDS 55.0%
! GGTCATTCGGTGGTTCAACC+GGG + 10874:8766-8785 MS.gene055549:CDS 55.0%
! TATCGAACCGGTGGTGGTGA+AGG + 10874:8919-8938 MS.gene055549:CDS 55.0%
! TGAACCGATTCACCCGGTTG+AGG - 10874:8535-8554 MS.gene055549:intergenic 55.0%
! TGAGGCTACCGGTTGAAGTG+AGG + 10874:8812-8831 MS.gene055549:CDS 55.0%
!! GTGGCTAGTAGCTCTGGTGA+AGG + 10874:9057-9076 MS.gene055549:CDS 55.0%
AGGGGTTATCGAACCGGTGG+TGG + 10874:8913-8932 MS.gene055549:CDS 60.0%
CCAAGGGTGGCTAGTAGCTC+TGG + 10874:9051-9070 MS.gene055549:CDS 60.0%
CCAGAGCTACTAGCCACCCT+TGG - 10874:9054-9073 MS.gene055549:intergenic 60.0%
CGTCGTCGATGAGGTCACCA+AGG + 10874:9034-9053 MS.gene055549:CDS 60.0%
GTCGATGAGGTCACCAAGGG+TGG + 10874:9038-9057 MS.gene055549:CDS 60.0%
GTCTGTAAGGCGGTTGGACC+GGG + 10874:8957-8976 MS.gene055549:CDS 60.0%
TACGGTTCCGGTTCAGCGTC+TGG - 10874:8693-8712 MS.gene055549:intergenic 60.0%
TCACTCGACCGGTCATTCGG+TGG + 10874:8756-8775 MS.gene055549:CDS 60.0%
TCTGTAAGGCGGTTGGACCG+GGG + 10874:8958-8977 MS.gene055549:CDS 60.0%
! AGCGCGTGGTCTTGACGCAT+CGG + 10874:8297-8316 MS.gene055549:CDS 60.0%
CGGAGGGGTTATCGAACCGG+TGG + 10874:8910-8929 MS.gene055549:CDS 65.0%
TGCTTCAGCAGCTACGGCGG+CGG + 10874:9086-9105 MS.gene055549:CDS 65.0%
!! CGGCGGTTGTTGACTCCCCG+CGG + 10874:9103-9122 MS.gene055549:CDS 70.0%
CGTTCACGACGCGCAGCGCG+TGG + 10874:8283-8302 MS.gene055549:CDS 75.0%


Chromosome Type Strat End Strand Name
10874 gene 8157 9131 8157 ID=MS.gene055549
10874 mRNA 8157 9131 8157 ID=MS.gene055549.t1;Parent=MS.gene055549
10874 exon 8157 9131 8157 ID=MS.gene055549.t1.exon1;Parent=MS.gene055549.t1
10874 CDS 8157 9131 8157 ID=cds.MS.gene055549.t1;Parent=MS.gene055549.t1
Gene Sequence

>MS.gene055549

ATGGCTATAATAATCGTAATTCTCATCGCTGCTCTCTTTCTCATGGGTTTCTTCTCAATCTACATCCGTCGATGCGGCGATTCACCTTCCAACAGCATACGCAACATGGCAGGAGGTTTAGCTGGACGTTCACGACGCGCAGCGCGTGGTCTTGACGCATCGGTGATCGCGACGTTCCCGATCTTTGAATACTCAGCTGTGAAGATTCATAAAATCGGAAAAGGCGCGTTGGAGTGTGCTGTTTGTTTGAACGAGTTTGAAGAGAGTGAAACGCTGCGTTTGATTCCAAAGTGTGATCATGTTTTTCACCCTGAGTGTATTGATGAATGGCTCGGTTCTCATACCACTTGTCCGGTTTGCAGAGCTAATTTGGTTCCTCAACCGGGTGAATCGGTTCACGGTATCCCGTCGATTAATACCGAACCACAAGATATTGAAGCTCAAAACGAAGCTGTTGAATCGGTTCATGAACATCAAAACGCGGACGGTTCTGTAAAAGTCGAGCCAACTGAACCAGAAGTGTTGACTGTAAGCCAGACGCTGAACCGGAACCGTACAAGAGGTTCACAGTCTGGTAGGCTTCGTTGGTTTTCGAGGTCTCACTCGACCGGTCATTCGGTGGTTCAACCGGGTGAGAACACTGAACGGTTCACTTTGAGGCTACCGGTTGAAGTGAGGAAACAAATACTACTACAGAACCCGGAATTACATAGAGCTAGAAGCTTGGTTGTGTTGCCGAGAGAAACTAGTTCACGGAGGGGTTATCGAACCGGTGGTGGTGAAGGAAGTAGTAGAGGGAAGTCTGTAAGGCGGTTGGACCGGGGTTTATTATCAGACCGGTGGGTTTTTACGATGGCGCCACCTTTCCTTGTAAGAGCGTCGTCGATGAGGTCACCAAGGGTGGCTAGTAGCTCTGGTGAAGGTACATCTGCTTCAGCAGCTACGGCGGCGGTTGTTGACTCCCCGCGGCCACCG

Protein sequence

>MS.gene055549.t1

MAIIIVILIAALFLMGFFSIYIRRCGDSPSNSIRNMAGGLAGRSRRAARGLDASVIATFPIFEYSAVKIHKIGKGALECAVCLNEFEESETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPQPGESVHGIPSINTEPQDIEAQNEAVESVHEHQNADGSVKVEPTEPEVLTVSQTLNRNRTRGSQSGRLRWFSRSHSTGHSVVQPGENTERFTLRLPVEVRKQILLQNPELHRARSLVVLPRETSSRRGYRTGGGEGSSRGKSVRRLDRGLLSDRWVFTMAPPFLVRASSMRSPRVASSSGEGTSASAATAAVVDSPRPP