Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09730.t1 | XP_003611360.2 | 90.1 | 395 | 39 | 0 | 1 | 395 | 18 | 412 | 3.60E-199 | 704.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09730.t1 | G7JXG1 | 90.1 | 395 | 39 | 0 | 1 | 395 | 1 | 395 | 2.6e-199 | 704.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060473 | MS.gene09730 | 0.804906 | 1.73E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09730.t1 | MTR_5g013140 | 90.886 | 395 | 36 | 0 | 1 | 395 | 1 | 395 | 0.0 | 737 |
| MS.gene09730.t1 | MTR_5g013080 | 68.027 | 147 | 45 | 1 | 114 | 258 | 1 | 147 | 2.09e-59 | 192 |
| MS.gene09730.t1 | MTR_5g013080 | 91.228 | 57 | 5 | 0 | 338 | 394 | 149 | 205 | 1.10e-28 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09730.t1 | AT4G16807 | 42.424 | 99 | 53 | 2 | 295 | 389 | 341 | 439 | 2.98e-12 | 68.2 |
Find 72 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGTTCTGTACAAACTTTC+GGG | 0.217245 | 5.3:+6113522 | None:intergenic |
| TTGTGTTCTGTACAAACTTT+CGG | 0.268766 | 5.3:+6113521 | None:intergenic |
| TCGTCGTCATCGTGCCCTTC+TGG | 0.289085 | 5.3:-6115030 | MS.gene09730:intron |
| AGAAGCACATTTAATGTCAT+TGG | 0.352147 | 5.3:-6112942 | MS.gene09730:CDS |
| TATTGCCAGCACTTCCCATT+TGG | 0.366346 | 5.3:-6113074 | MS.gene09730:CDS |
| TCCAATGTCATGGAGATTAC+AGG | 0.369680 | 5.3:-6112572 | MS.gene09730:CDS |
| TTTCAGAGCCTCCTGATGTT+GGG | 0.387418 | 5.3:-6114875 | MS.gene09730:intron |
| AGCCTCCTGATGTTGGGAAT+TGG | 0.387623 | 5.3:-6114869 | MS.gene09730:CDS |
| CGCATAATGAGCCGGTGAAC+CGG | 0.395632 | 5.3:-6112991 | MS.gene09730:CDS |
| AACCAGGAGTTCCATGATTC+CGG | 0.410764 | 5.3:+6112972 | None:intergenic |
| AGCTCAGGCACACAATTCTC+TGG | 0.431491 | 5.3:-6113870 | MS.gene09730:intron |
| TTCAAAGCAGGCCCACGATC+AGG | 0.440360 | 5.3:+6112521 | None:intergenic |
| AAATTTCACTCTCGAAGAAT+CGG | 0.441523 | 5.3:-6114808 | MS.gene09730:CDS |
| TGAATATCAATCTCCCAATC+TGG | 0.442361 | 5.3:-6114835 | MS.gene09730:CDS |
| GCTAAACATGTGTTGATGTC+AGG | 0.446908 | 5.3:+6112824 | None:intergenic |
| ATGTTTAGCTAAAAGATTCT+CGG | 0.447592 | 5.3:-6112810 | MS.gene09730:CDS |
| GTGAAATTTGAATCCAGATT+GGG | 0.447623 | 5.3:+6114822 | None:intergenic |
| AGCCTCTGGATATCAGAAAC+TGG | 0.451193 | 5.3:-6113691 | MS.gene09730:CDS |
| TCATGGAGATTACAGGGAAA+TGG | 0.453039 | 5.3:-6112565 | MS.gene09730:CDS |
| AATCTGGATTCTTGCAGCTC+AGG | 0.454144 | 5.3:-6113885 | MS.gene09730:CDS |
| GCAGCCATGCATGCAAGATA+AGG | 0.455441 | 5.3:-6113041 | MS.gene09730:CDS |
| AGTGAAATTTGAATCCAGAT+TGG | 0.462440 | 5.3:+6114821 | None:intergenic |
| AGGTTAGGGTTCAAGATGAA+GGG | 0.463615 | 5.3:-6114731 | MS.gene09730:CDS |
| GACATTGGACTGTTGAAGAT+TGG | 0.464044 | 5.3:+6112586 | None:intergenic |
| TCCATTGTCATGTGAAAAGA+AGG | 0.465069 | 5.3:-6112642 | MS.gene09730:CDS |
| GAGAACCAATTCCCAACATC+AGG | 0.480177 | 5.3:+6114864 | None:intergenic |
| AACCGGAATCATGGAACTCC+TGG | 0.483317 | 5.3:-6112974 | MS.gene09730:CDS |
| TGATTTCGCTTCTTCGGCAG+TGG | 0.483565 | 5.3:+6112871 | None:intergenic |
| GCAACTTAGGCTTGAGCGAT+GGG | 0.488460 | 5.3:-6112498 | MS.gene09730:CDS |
| AAGGTTAGGGTTCAAGATGA+AGG | 0.494566 | 5.3:-6114732 | MS.gene09730:CDS |
| ATCTCAGCAAGATGAAAAGA+AGG | 0.497254 | 5.3:-6114769 | MS.gene09730:CDS |
| ACAAGAAATAACGAAAATGA+TGG | 0.498843 | 5.3:-6112770 | MS.gene09730:CDS |
| TGACAGGATGATGGTAGTAC+TGG | 0.499078 | 5.3:-6113115 | MS.gene09730:intron |
| GAGCCGGTGAACCGGAATCA+TGG | 0.503728 | 5.3:-6112983 | MS.gene09730:CDS |
| AGTGCCTTATCTTGCATGCA+TGG | 0.506122 | 5.3:+6113037 | None:intergenic |
| AGGCCTCATTGCACTTGTAT+CGG | 0.507145 | 5.3:+6112916 | None:intergenic |
| GAGCGATGGGTTCACAAGGT+TGG | 0.511141 | 5.3:-6112485 | MS.gene09730:CDS |
| GTTCCATGATTCCGGTTCAC+CGG | 0.512708 | 5.3:+6112980 | None:intergenic |
| TTGCAGTGTTCAACAAGTAC+AGG | 0.515016 | 5.3:-6112671 | MS.gene09730:CDS |
| AGCAACTTAGGCTTGAGCGA+TGG | 0.515958 | 5.3:-6112499 | MS.gene09730:CDS |
| AGTAATGAAGAAGTTTCTGA+AGG | 0.528030 | 5.3:-6113617 | MS.gene09730:CDS |
| CCCTGTAATCTCCATGACAT+TGG | 0.528548 | 5.3:+6112571 | None:intergenic |
| TAAATATGATAATCAGAAAG+AGG | 0.530984 | 5.3:-6114667 | MS.gene09730:CDS |
| GGCCTGCTTTGAAGCAACTT+AGG | 0.532572 | 5.3:-6112511 | MS.gene09730:CDS |
| GGTTAGGGTTCAAGATGAAG+GGG | 0.534344 | 5.3:-6114730 | MS.gene09730:CDS |
| AGCCTAAGTTGCTTCAAAGC+AGG | 0.537361 | 5.3:+6112509 | None:intergenic |
| TTGTTAATAAAGATGAAGTC+AGG | 0.541273 | 5.3:-6113559 | MS.gene09730:CDS |
| GAAGGGTGTTGCAAAGAGAA+AGG | 0.548528 | 5.3:-6112624 | MS.gene09730:CDS |
| ATATTCACCTTGGTCAAACA+TGG | 0.550722 | 5.3:+6114642 | None:intergenic |
| GGAATAAGTGTGAAGAGGAG+AGG | 0.560247 | 5.3:-6113595 | MS.gene09730:CDS |
| CCAATGTCATGGAGATTACA+GGG | 0.563427 | 5.3:-6112571 | MS.gene09730:CDS |
| TGAAGGGAATAAGTGTGAAG+AGG | 0.567436 | 5.3:-6113600 | MS.gene09730:CDS |
| TTCAACCACGCATAATGAGC+CGG | 0.575278 | 5.3:-6112999 | MS.gene09730:CDS |
| TCTTCAACAGTCCAATGTCA+TGG | 0.584453 | 5.3:-6112582 | MS.gene09730:CDS |
| GTAATGAAGAAGTTTCTGAA+GGG | 0.585358 | 5.3:-6113616 | MS.gene09730:CDS |
| GCTTGAGCGATGGGTTCACA+AGG | 0.606909 | 5.3:-6112489 | MS.gene09730:CDS |
| GTGTTCTGTACAAACTTTCG+GGG | 0.611462 | 5.3:+6113523 | None:intergenic |
| AACCAATTCCCAACATCAGG+AGG | 0.613775 | 5.3:+6114867 | None:intergenic |
| ATTGAACAATGACAGGATGA+TGG | 0.629600 | 5.3:-6113124 | MS.gene09730:intron |
| TATTCACCTTGGTCAAACAT+GGG | 0.643851 | 5.3:+6114643 | None:intergenic |
| GAGAAGCTAATGCAATGTGG+TGG | 0.645188 | 5.3:-6114699 | MS.gene09730:CDS |
| GTTCACCGGCTCATTATGCG+TGG | 0.645544 | 5.3:+6112994 | None:intergenic |
| GATATGGACACATACCAGAA+GGG | 0.661804 | 5.3:+6115016 | None:intergenic |
| ATGAGCCAACTATGTCAATG+AGG | 0.668959 | 5.3:+6112452 | None:intergenic |
| AACCAGTTTCTGATATCCAG+AGG | 0.670315 | 5.3:+6113689 | None:intergenic |
| TGTGCTTCTCTATTACAACC+AGG | 0.673901 | 5.3:+6112956 | None:intergenic |
| AGAGGACCCATGTTTGACCA+AGG | 0.677969 | 5.3:-6114649 | MS.gene09730:intron |
| CCATTGTCATGTGAAAAGAA+GGG | 0.677971 | 5.3:-6112641 | MS.gene09730:CDS |
| TGTTCTGTACAAACTTTCGG+GGG | 0.713786 | 5.3:+6113524 | None:intergenic |
| ACACCGATACAAGTGCAATG+AGG | 0.733865 | 5.3:-6112919 | MS.gene09730:CDS |
| AAAGTTTGTACAGAACACAA+TGG | 0.743079 | 5.3:-6113518 | MS.gene09730:CDS |
| AGAGAGAAGCTAATGCAATG+TGG | 0.773361 | 5.3:-6114702 | MS.gene09730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATTGGAATTGAAATT+AGG | - | chr5.3:6112516-6112535 | MS.gene09730:CDS | 20.0% |
| !! | AAGTTTGTCATAAGTTATAA+GGG | - | chr5.3:6113393-6113412 | MS.gene09730:intron | 20.0% |
| !! | AATTGAAAATTTCTTCATGT+AGG | - | chr5.3:6113316-6113335 | MS.gene09730:intron | 20.0% |
| !! | AATTGTAAATAATACACCTT+TGG | - | chr5.3:6114074-6114093 | MS.gene09730:intron | 20.0% |
| !! | GAGAAAATAAAGAAAAATCT+TGG | - | chr5.3:6114784-6114803 | MS.gene09730:CDS | 20.0% |
| !! | TAAATATGATAATCAGAAAG+AGG | - | chr5.3:6112832-6112851 | MS.gene09730:CDS | 20.0% |
| !! | TAAGTTTGTCATAAGTTATA+AGG | - | chr5.3:6113392-6113411 | MS.gene09730:intron | 20.0% |
| !! | TTAACACAAAAACCTAAAAA+AGG | - | chr5.3:6112567-6112586 | MS.gene09730:CDS | 20.0% |
| !!! | ATTAGGAATGAATAATTTTG+AGG | - | chr5.3:6112533-6112552 | MS.gene09730:CDS | 20.0% |
| !!! | TGCTAAAAGTATCTATAATT+TGG | - | chr5.3:6113686-6113705 | MS.gene09730:CDS | 20.0% |
| !!! | TTAGGAATGAATAATTTTGA+GGG | - | chr5.3:6112534-6112553 | MS.gene09730:CDS | 20.0% |
| !!! | TTTTCAAGTTATAGTGTTAA+TGG | - | chr5.3:6113190-6113209 | MS.gene09730:intron | 20.0% |
| ! | AAAGAAGGAAAAAAGAAATC+AGG | - | chr5.3:6113481-6113500 | MS.gene09730:intron | 25.0% |
| ! | AAGAAATTTGAAAAGAAGCA+TGG | + | chr5.3:6113665-6113684 | None:intergenic | 25.0% |
| ! | AATATGCATGATCAGAATTT+AGG | + | chr5.3:6114115-6114134 | None:intergenic | 25.0% |
| ! | AATTACAAAAAACACAAGCA+AGG | + | chr5.3:6113785-6113804 | None:intergenic | 25.0% |
| ! | ACAAGAAATAACGAAAATGA+TGG | - | chr5.3:6114729-6114748 | MS.gene09730:CDS | 25.0% |
| ! | ATCACATAACAGAAATCAAA+AGG | + | chr5.3:6112598-6112617 | None:intergenic | 25.0% |
| ! | ATCCTTATAGAACAAAACAT+TGG | - | chr5.3:6112503-6112522 | MS.gene09730:CDS | 25.0% |
| ! | ATGACTCAATAAATGTTCTT+TGG | - | chr5.3:6114351-6114370 | MS.gene09730:intron | 25.0% |
| ! | ATGTTTAGCTAAAAGATTCT+CGG | - | chr5.3:6114689-6114708 | MS.gene09730:CDS | 25.0% |
| ! | ATTGAGTAAAATATTCACCT+TGG | + | chr5.3:6112870-6112889 | None:intergenic | 25.0% |
| ! | GATCATGCATATTTGTAATA+TGG | - | chr5.3:6114122-6114141 | MS.gene09730:intron | 25.0% |
| ! | TAAAAGCTTGTGTCTTTATA+AGG | + | chr5.3:6113079-6113098 | None:intergenic | 25.0% |
| ! | TAACTATCTAATCTACTTCT+AGG | + | chr5.3:6114172-6114191 | None:intergenic | 25.0% |
| ! | TGACTCAATAAATGTTCTTT+GGG | - | chr5.3:6114352-6114371 | MS.gene09730:intron | 25.0% |
| ! | TTGTTAATAAAGATGAAGTC+AGG | - | chr5.3:6113940-6113959 | MS.gene09730:intron | 25.0% |
| ! | TTTACTTTGTGAAAGTTCAT+AGG | - | chr5.3:6114309-6114328 | MS.gene09730:intron | 25.0% |
| !! | AAAGACACAAGCTTTTATAA+GGG | - | chr5.3:6113082-6113101 | MS.gene09730:CDS | 25.0% |
| !! | TAAAGACACAAGCTTTTATA+AGG | - | chr5.3:6113081-6113100 | MS.gene09730:CDS | 25.0% |
| !!! | AATGGATCATAGTTACTTTT+AGG | - | chr5.3:6113208-6113227 | MS.gene09730:intron | 25.0% |
| !!! | ATGGATCATAGTTACTTTTA+GGG | - | chr5.3:6113209-6113228 | MS.gene09730:intron | 25.0% |
| !!! | CAAAAGGAAATTCCTTTTTT+AGG | + | chr5.3:6112582-6112601 | None:intergenic | 25.0% |
| !!! | TGTTTTGTTCTATAAGGATA+TGG | + | chr5.3:6112502-6112521 | None:intergenic | 25.0% |
| !!! | TTCCAATGTTTTGTTCTATA+AGG | + | chr5.3:6112508-6112527 | None:intergenic | 25.0% |
| AAAAACTGAAATCAAAGCTG+AGG | - | chr5.3:6114650-6114669 | MS.gene09730:CDS | 30.0% | |
| AAAAGAAATCAGGTTATGGT+TGG | - | chr5.3:6113491-6113510 | MS.gene09730:intron | 30.0% | |
| AAAGTTTGTACAGAACACAA+TGG | - | chr5.3:6113981-6114000 | MS.gene09730:intron | 30.0% | |
| AAATTTCACTCTCGAAGAAT+CGG | - | chr5.3:6112691-6112710 | MS.gene09730:CDS | 30.0% | |
| AGTAATGAAGAAGTTTCTGA+AGG | - | chr5.3:6113882-6113901 | MS.gene09730:CDS | 30.0% | |
| AGTGAAATTTGAATCCAGAT+TGG | + | chr5.3:6112681-6112700 | None:intergenic | 30.0% | |
| CACAGAAGCAAATCTAAATT+AGG | - | chr5.3:6113142-6113161 | MS.gene09730:intron | 30.0% | |
| GGAAAAAAGAAATCAGGTTA+TGG | - | chr5.3:6113487-6113506 | MS.gene09730:intron | 30.0% | |
| GGGTTAATATTCCATTTGAT+TGG | - | chr5.3:6113245-6113264 | MS.gene09730:intron | 30.0% | |
| GTAATGAAGAAGTTTCTGAA+GGG | - | chr5.3:6113883-6113902 | MS.gene09730:CDS | 30.0% | |
| GTGAAATTTGAATCCAGATT+GGG | + | chr5.3:6112680-6112699 | None:intergenic | 30.0% | |
| TAACTGAATGATCTACTTCT+AGG | + | chr5.3:6114263-6114282 | None:intergenic | 30.0% | |
| TATAGAAGCTAATCTACACT+AGG | - | chr5.3:6113452-6113471 | MS.gene09730:intron | 30.0% | |
| TTGTGTTCTGTACAAACTTT+CGG | + | chr5.3:6113981-6114000 | None:intergenic | 30.0% | |
| TTTATTTGTCTTGCAGAATC+TGG | - | chr5.3:6113598-6113617 | MS.gene09730:CDS | 30.0% | |
| ! | AGAAGCACATTTAATGTCAT+TGG | - | chr5.3:6114557-6114576 | MS.gene09730:intron | 30.0% |
| ! | AGATTTGCTTCTGTGATTTA+TGG | + | chr5.3:6113137-6113156 | None:intergenic | 30.0% |
| ! | CTCTTTTGATAAAAACATGG+AGG | - | chr5.3:6114004-6114023 | MS.gene09730:intron | 30.0% |
| ! | CTGCAAAATCTTTTCCAAAT+GGG | + | chr5.3:6114442-6114461 | None:intergenic | 30.0% |
| ! | TGGCTCTTTTGATAAAAACA+TGG | - | chr5.3:6114001-6114020 | MS.gene09730:intron | 30.0% |
| ! | TTTAGGGTCATCAAATTTCA+GGG | - | chr5.3:6113225-6113244 | MS.gene09730:intron | 30.0% |
| !! | AAGCAGATTTTGATAAGGTT+AGG | - | chr5.3:6112753-6112772 | MS.gene09730:CDS | 30.0% |
| !! | AGCAGATTTTGATAAGGTTA+GGG | - | chr5.3:6112754-6112773 | MS.gene09730:CDS | 30.0% |
| !! | TAGTTAGTTGATGATCTGAT+AGG | - | chr5.3:6114186-6114205 | MS.gene09730:intron | 30.0% |
| !! | TTAGTTGATGATGACATGAA+TGG | - | chr5.3:6114280-6114299 | MS.gene09730:intron | 30.0% |
| !!! | AGTTTTTGATTTCGCTTCTT+CGG | + | chr5.3:6114637-6114656 | None:intergenic | 30.0% |
| !!! | TTTTAGGGTCATCAAATTTC+AGG | - | chr5.3:6113224-6113243 | MS.gene09730:intron | 30.0% |
| AAAAACGTAAACCTGATCGT+GGG | - | chr5.3:6114967-6114986 | MS.gene09730:intron | 35.0% | |
| AAATGTTTACCTTTGAGCCT+TGG | + | chr5.3:6114227-6114246 | None:intergenic | 35.0% | |
| ATATTCACCTTGGTCAAACA+TGG | + | chr5.3:6112860-6112879 | None:intergenic | 35.0% | |
| ATCTAGACAGTCCAATCAAA+TGG | + | chr5.3:6113259-6113278 | None:intergenic | 35.0% | |
| ATCTCAGCAAGATGAAAAGA+AGG | - | chr5.3:6112730-6112749 | MS.gene09730:CDS | 35.0% | |
| ATTGAACAATGACAGGATGA+TGG | - | chr5.3:6114375-6114394 | MS.gene09730:intron | 35.0% | |
| CACCTTTGGTTAATGATCAA+TGG | - | chr5.3:6114088-6114107 | MS.gene09730:intron | 35.0% | |
| CCATTGTCATGTGAAAAGAA+GGG | - | chr5.3:6114858-6114877 | MS.gene09730:CDS | 35.0% | |
| GACCATTGATCATTAACCAA+AGG | + | chr5.3:6114093-6114112 | None:intergenic | 35.0% | |
| GCAAATCTAAATTAGGCTGA+AGG | - | chr5.3:6113149-6113168 | MS.gene09730:intron | 35.0% | |
| GGATATTGTTTACTTTGCCA+AGG | - | chr5.3:6114207-6114226 | MS.gene09730:intron | 35.0% | |
| TACACTAGGCTAAAGAAAGA+AGG | - | chr5.3:6113466-6113485 | MS.gene09730:intron | 35.0% | |
| TATTCACCTTGGTCAAACAT+GGG | + | chr5.3:6112859-6112878 | None:intergenic | 35.0% | |
| TCCATTGTCATGTGAAAAGA+AGG | - | chr5.3:6114857-6114876 | MS.gene09730:CDS | 35.0% | |
| TGAATATCAATCTCCCAATC+TGG | - | chr5.3:6112664-6112683 | MS.gene09730:CDS | 35.0% | |
| TGTGTTCTGTACAAACTTTC+GGG | + | chr5.3:6113980-6113999 | None:intergenic | 35.0% | |
| ! | CACTGCAATAATGTCTTTTC+TGG | + | chr5.3:6114816-6114835 | None:intergenic | 35.0% |
| ! | CCATCAAAGTTTTGCTGATA+GGG | - | chr5.3:6113531-6113550 | MS.gene09730:CDS | 35.0% |
| ! | GATCAGGTTTACGTTTTTGT+GGG | + | chr5.3:6114965-6114984 | None:intergenic | 35.0% |
| ! | GCTGCAAAATCTTTTCCAAA+TGG | + | chr5.3:6114443-6114462 | None:intergenic | 35.0% |
| ! | TTTTTGTAATTCAGAGCCTC+TGG | - | chr5.3:6113794-6113813 | MS.gene09730:intron | 35.0% |
| !! | GAAGGAAGCAGATTTTGATA+AGG | - | chr5.3:6112748-6112767 | MS.gene09730:CDS | 35.0% |
| !!! | ATGATGGTTTTGTTACAACG+AGG | - | chr5.3:6114745-6114764 | MS.gene09730:CDS | 35.0% |
| AACCAGTTTCTGATATCCAG+AGG | + | chr5.3:6113813-6113832 | None:intergenic | 40.0% | |
| AAGGTTAGGGTTCAAGATGA+AGG | - | chr5.3:6112767-6112786 | MS.gene09730:CDS | 40.0% | |
| AGAGAGAAGCTAATGCAATG+TGG | - | chr5.3:6112797-6112816 | MS.gene09730:CDS | 40.0% | |
| AGGTTAGGGTTCAAGATGAA+GGG | - | chr5.3:6112768-6112787 | MS.gene09730:CDS | 40.0% | |
| CAAAAACGTAAACCTGATCG+TGG | - | chr5.3:6114966-6114985 | MS.gene09730:intron | 40.0% | |
| CCAATGTCATGGAGATTACA+GGG | - | chr5.3:6114928-6114947 | MS.gene09730:intron | 40.0% | |
| CCCTATCAGCAAAACTTTGA+TGG | + | chr5.3:6113534-6113553 | None:intergenic | 40.0% | |
| GACATTGGACTGTTGAAGAT+TGG | + | chr5.3:6114916-6114935 | None:intergenic | 40.0% | |
| GATATGGACACATACCAGAA+GGG | + | chr5.3:6112486-6112505 | None:intergenic | 40.0% | |
| GTGTTCTGTACAAACTTTCG+GGG | + | chr5.3:6113979-6113998 | None:intergenic | 40.0% | |
| TCATGGAGATTACAGGGAAA+TGG | - | chr5.3:6114934-6114953 | MS.gene09730:intron | 40.0% | |
| TCCAATGTCATGGAGATTAC+AGG | - | chr5.3:6114927-6114946 | MS.gene09730:intron | 40.0% | |
| TCTTCAACAGTCCAATGTCA+TGG | - | chr5.3:6114917-6114936 | MS.gene09730:intron | 40.0% | |
| TGAAGGGAATAAGTGTGAAG+AGG | - | chr5.3:6113899-6113918 | MS.gene09730:intron | 40.0% | |
| TGTGCTTCTCTATTACAACC+AGG | + | chr5.3:6114546-6114565 | None:intergenic | 40.0% | |
| TGTTCTGTACAAACTTTCGG+GGG | + | chr5.3:6113978-6113997 | None:intergenic | 40.0% | |
| TTGCAGTGTTCAACAAGTAC+AGG | - | chr5.3:6114828-6114847 | MS.gene09730:CDS | 40.0% | |
| TTTACTTTGCCAAGGCTCAA+AGG | - | chr5.3:6114215-6114234 | MS.gene09730:intron | 40.0% | |
| ! | CCCTTCTTTTCACATGACAA+TGG | + | chr5.3:6114861-6114880 | None:intergenic | 40.0% |
| ! | CGATCAGGTTTACGTTTTTG+TGG | + | chr5.3:6114966-6114985 | None:intergenic | 40.0% |
| ! | GCCATCAAAGTTTTGCTGAT+AGG | - | chr5.3:6113530-6113549 | MS.gene09730:CDS | 40.0% |
| ! | GCTAAACATGTGTTGATGTC+AGG | + | chr5.3:6114678-6114697 | None:intergenic | 40.0% |
| !! | CTTTGGGATTGAACAATGAC+AGG | - | chr5.3:6114368-6114387 | MS.gene09730:intron | 40.0% |
| !! | GCATGCTTTTGTACTAGCTT+TGG | + | chr5.3:6114609-6114628 | None:intergenic | 40.0% |
| !!! | TGCTTTTGTACTAGCTTTGG+AGG | + | chr5.3:6114606-6114625 | None:intergenic | 40.0% |
| AACCAATTCCCAACATCAGG+AGG | + | chr5.3:6112635-6112654 | None:intergenic | 45.0% | |
| AACCAGGAGTTCCATGATTC+CGG | + | chr5.3:6114530-6114549 | None:intergenic | 45.0% | |
| AATCTGGATTCTTGCAGCTC+AGG | - | chr5.3:6113614-6113633 | MS.gene09730:CDS | 45.0% | |
| ACACCGATACAAGTGCAATG+AGG | - | chr5.3:6114580-6114599 | MS.gene09730:intron | 45.0% | |
| AGCCTAAGTTGCTTCAAAGC+AGG | + | chr5.3:6114993-6115012 | None:intergenic | 45.0% | |
| AGCCTCTGGATATCAGAAAC+TGG | - | chr5.3:6113808-6113827 | MS.gene09730:intron | 45.0% | |
| AGGCCTCATTGCACTTGTAT+CGG | + | chr5.3:6114586-6114605 | None:intergenic | 45.0% | |
| AGTGCCTTATCTTGCATGCA+TGG | + | chr5.3:6114465-6114484 | None:intergenic | 45.0% | |
| CCCTGTAATCTCCATGACAT+TGG | + | chr5.3:6114931-6114950 | None:intergenic | 45.0% | |
| GAGAACCAATTCCCAACATC+AGG | + | chr5.3:6112638-6112657 | None:intergenic | 45.0% | |
| GAGAAGCTAATGCAATGTGG+TGG | - | chr5.3:6112800-6112819 | MS.gene09730:CDS | 45.0% | |
| GGAATAAGTGTGAAGAGGAG+AGG | - | chr5.3:6113904-6113923 | MS.gene09730:intron | 45.0% | |
| GGATATGGACACATACCAGA+AGG | + | chr5.3:6112487-6112506 | None:intergenic | 45.0% | |
| GGTTAGGGTTCAAGATGAAG+GGG | - | chr5.3:6112769-6112788 | MS.gene09730:CDS | 45.0% | |
| TATTGCCAGCACTTCCCATT+TGG | - | chr5.3:6114425-6114444 | MS.gene09730:intron | 45.0% | |
| TTCAACCACGCATAATGAGC+CGG | - | chr5.3:6114500-6114519 | MS.gene09730:intron | 45.0% | |
| TTTCAGAGCCTCCTGATGTT+GGG | - | chr5.3:6112624-6112643 | MS.gene09730:CDS | 45.0% | |
| ! | TGACAGGATGATGGTAGTAC+TGG | - | chr5.3:6114384-6114403 | MS.gene09730:intron | 45.0% |
| ! | TTTTCAGAGCCTCCTGATGT+TGG | - | chr5.3:6112623-6112642 | MS.gene09730:CDS | 45.0% |
| !! | CTTTTCCAAATGGGAAGTGC+TGG | + | chr5.3:6114433-6114452 | None:intergenic | 45.0% |
| !! | GAAGGGTGTTGCAAAGAGAA+AGG | - | chr5.3:6114875-6114894 | MS.gene09730:intron | 45.0% |
| AACCGGAATCATGGAACTCC+TGG | - | chr5.3:6114525-6114544 | MS.gene09730:intron | 50.0% | |
| AGAGGACCCATGTTTGACCA+AGG | - | chr5.3:6112850-6112869 | MS.gene09730:CDS | 50.0% | |
| AGCAACTTAGGCTTGAGCGA+TGG | - | chr5.3:6115000-6115019 | MS.gene09730:intron | 50.0% | |
| AGCCTCCTGATGTTGGGAAT+TGG | - | chr5.3:6112630-6112649 | MS.gene09730:CDS | 50.0% | |
| AGCTCAGGCACACAATTCTC+TGG | - | chr5.3:6113629-6113648 | MS.gene09730:CDS | 50.0% | |
| GCAACTTAGGCTTGAGCGAT+GGG | - | chr5.3:6115001-6115020 | MS.gene09730:intron | 50.0% | |
| GCAGCCATGCATGCAAGATA+AGG | - | chr5.3:6114458-6114477 | MS.gene09730:intron | 50.0% | |
| GTTCCATGATTCCGGTTCAC+CGG | + | chr5.3:6114522-6114541 | None:intergenic | 50.0% | |
| TGATTTCGCTTCTTCGGCAG+TGG | + | chr5.3:6114631-6114650 | None:intergenic | 50.0% | |
| !! | GGCCTGCTTTGAAGCAACTT+AGG | - | chr5.3:6114988-6115007 | MS.gene09730:intron | 50.0% |
| CGCATAATGAGCCGGTGAAC+CGG | - | chr5.3:6114508-6114527 | MS.gene09730:intron | 55.0% | |
| TTCAAAGCAGGCCCACGATC+AGG | + | chr5.3:6114981-6115000 | None:intergenic | 55.0% | |
| ! | GAGCGATGGGTTCACAAGGT+TGG | - | chr5.3:6115014-6115033 | MS.gene09730:intron | 55.0% |
| ! | GCTTGAGCGATGGGTTCACA+AGG | - | chr5.3:6115010-6115029 | MS.gene09730:intron | 55.0% |
| !! | GTTCACCGGCTCATTATGCG+TGG | + | chr5.3:6114508-6114527 | None:intergenic | 55.0% |
| GAGCCGGTGAACCGGAATCA+TGG | - | chr5.3:6114516-6114535 | MS.gene09730:intron | 60.0% | |
| TCGTCGTCATCGTGCCCTTC+TGG | - | chr5.3:6112469-6112488 | MS.gene09730:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 6112466 | 6115055 | 6112466 | ID=MS.gene09730 |
| chr5.3 | mRNA | 6112466 | 6115055 | 6112466 | ID=MS.gene09730.t1;Parent=MS.gene09730 |
| chr5.3 | exon | 6115031 | 6115055 | 6115031 | ID=MS.gene09730.t1.exon1;Parent=MS.gene09730.t1 |
| chr5.3 | CDS | 6115031 | 6115055 | 6115031 | ID=cds.MS.gene09730.t1;Parent=MS.gene09730.t1 |
| chr5.3 | exon | 6114650 | 6114891 | 6114650 | ID=MS.gene09730.t1.exon2;Parent=MS.gene09730.t1 |
| chr5.3 | CDS | 6114650 | 6114891 | 6114650 | ID=cds.MS.gene09730.t1;Parent=MS.gene09730.t1 |
| chr5.3 | exon | 6113871 | 6113907 | 6113871 | ID=MS.gene09730.t1.exon3;Parent=MS.gene09730.t1 |
| chr5.3 | CDS | 6113871 | 6113907 | 6113871 | ID=cds.MS.gene09730.t1;Parent=MS.gene09730.t1 |
| chr5.3 | exon | 6113496 | 6113713 | 6113496 | ID=MS.gene09730.t1.exon4;Parent=MS.gene09730.t1 |
| chr5.3 | CDS | 6113496 | 6113713 | 6113496 | ID=cds.MS.gene09730.t1;Parent=MS.gene09730.t1 |
| chr5.3 | exon | 6112466 | 6113131 | 6112466 | ID=MS.gene09730.t1.exon5;Parent=MS.gene09730.t1 |
| chr5.3 | CDS | 6112466 | 6113131 | 6112466 | ID=cds.MS.gene09730.t1;Parent=MS.gene09730.t1 |
| Gene Sequence |
| Protein sequence |
