AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09770.t1 MTR_5g012770 94.628 484 7 2 1 480 41 509 0.0 943
MS.gene09770.t1 MTR_4g100810 84.076 471 75 0 2 472 26 496 0.0 851
MS.gene09770.t1 MTR_3g115220 57.595 474 186 5 6 466 22 493 0.0 555
MS.gene09770.t1 MTR_5g099010 57.325 471 176 6 8 466 43 500 0.0 547
MS.gene09770.t1 MTR_1g031590 41.204 432 222 10 56 465 125 546 3.81e-108 332
MS.gene09770.t1 MTR_4g084570 41.509 424 225 10 71 472 132 554 8.56e-104 321
MS.gene09770.t1 MTR_3g005340 41.355 428 230 9 57 467 123 546 7.10e-102 317
MS.gene09770.t1 MTR_5g042200 42.857 413 213 9 80 475 81 487 2.23e-100 310
MS.gene09770.t1 MTR_4g019210 41.435 432 227 11 52 467 202 623 2.47e-99 312
MS.gene09770.t1 MTR_4g082310 42.651 415 213 10 79 475 92 499 3.06e-99 307
MS.gene09770.t1 MTR_5g064620 42.347 392 213 7 54 440 84 467 1.14e-95 299
MS.gene09770.t1 MTR_5g081690 39.862 434 229 14 54 468 93 513 1.86e-95 298
MS.gene09770.t1 MTR_6g016015 42.893 401 215 8 77 464 108 507 2.25e-95 298
MS.gene09770.t1 MTR_4g125460 39.310 435 236 9 49 466 56 479 7.55e-95 295
MS.gene09770.t1 MTR_4g110030 41.895 401 219 8 77 464 109 508 2.77e-94 295
MS.gene09770.t1 MTR_5g059260 45.915 355 170 7 85 420 158 509 2.96e-94 297
MS.gene09770.t1 MTR_3g099480 42.172 396 215 7 56 444 115 503 3.89e-94 295
MS.gene09770.t1 MTR_3g086570 37.190 484 259 15 12 465 79 547 4.01e-94 295
MS.gene09770.t1 MTR_2g059350 41.935 403 216 9 77 464 108 507 1.88e-93 293
MS.gene09770.t1 MTR_4g125460 39.310 435 236 9 49 466 195 618 3.80e-93 295
MS.gene09770.t1 MTR_2g016470 37.923 414 210 10 68 436 174 585 2.11e-90 288
MS.gene09770.t1 MTR_3g096020 42.005 369 203 5 56 420 164 525 2.66e-88 282
MS.gene09770.t1 MTR_4g132590 36.617 467 236 13 51 465 34 492 8.12e-87 275
MS.gene09770.t1 MTR_4g132590 36.617 467 236 13 51 465 133 591 1.55e-85 275
MS.gene09770.t1 MTR_5g032100 36.404 456 233 12 55 466 60 502 2.86e-82 263
MS.gene09770.t1 MTR_3g100310 37.471 427 226 13 76 465 93 515 3.13e-78 253
MS.gene09770.t1 MTR_1g102030 40.599 367 202 6 84 436 88 452 1.24e-77 252
MS.gene09770.t1 MTR_3g026650 37.292 421 248 9 55 465 142 556 2.04e-75 247
MS.gene09770.t1 MTR_4g023030 37.089 426 254 7 55 471 202 622 3.23e-72 240
MS.gene09770.t1 MTR_3g086570 36.612 366 190 12 12 349 79 430 6.49e-68 224
MS.gene09770.t1 MTR_3g026650 39.255 349 201 5 55 396 142 486 1.30e-65 219
MS.gene09770.t1 MTR_1g101990 41.176 255 145 4 196 446 6 259 5.67e-52 178
MS.gene09770.t1 MTR_4g010990 31.608 367 221 9 54 409 46 393 1.13e-51 181
MS.gene09770.t1 MTR_4g010990 32.087 321 189 8 100 409 2 304 5.60e-46 164
MS.gene09770.t1 MTR_7g017330 33.075 387 214 16 3 356 11 385 7.98e-46 169
MS.gene09770.t1 MTR_3g092590 29.867 375 244 8 3 359 7 380 1.79e-42 159
MS.gene09770.t1 MTR_3g092590 29.867 375 244 8 3 359 7 380 4.73e-42 159
MS.gene09770.t1 MTR_3g026650 37.405 262 154 4 55 310 142 399 2.90e-40 149
MS.gene09770.t1 MTR_1g007390 28.609 381 247 9 3 359 7 386 1.21e-35 140
MS.gene09770.t1 MTR_7g064210 41.279 172 82 4 205 361 26 193 2.06e-32 128
MS.gene09770.t1 MTR_2g038320 29.310 348 198 13 76 412 84 394 2.85e-30 122
MS.gene09770.t1 MTR_4g008200 28.382 377 213 15 49 411 5 338 5.01e-28 115
MS.gene09770.t1 MTR_4g008200 28.382 377 213 15 49 411 56 389 1.37e-27 114
MS.gene09770.t1 MTR_1g101985 44.340 106 57 1 55 160 61 164 4.31e-22 94.0
MS.gene09770.t1 MTR_1g095680 43.023 86 38 1 210 284 9 94 3.79e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09770.t1 AT4G16650 76.842 475 107 1 2 476 43 514 0.0 760
MS.gene09770.t1 AT4G16650 76.842 475 107 1 2 476 43 514 0.0 760
MS.gene09770.t1 AT4G38390 57.576 462 194 2 6 465 44 505 0.0 550
MS.gene09770.t1 AT1G20550 54.865 483 205 5 8 480 24 503 0.0 543
MS.gene09770.t1 AT1G76270 60.432 417 162 2 51 466 73 487 0.0 540
MS.gene09770.t1 AT1G14970 43.230 421 216 10 69 467 15 434 1.27e-109 332
MS.gene09770.t1 AT1G14970 44.279 402 206 9 83 467 8 408 2.12e-109 330
MS.gene09770.t1 AT1G14970 42.000 450 236 11 40 467 108 554 4.33e-109 335
MS.gene09770.t1 AT2G01480 42.993 421 217 10 69 467 134 553 8.52e-108 332
MS.gene09770.t1 AT2G01480 46.113 373 180 8 69 420 134 506 2.70e-106 327
MS.gene09770.t1 AT2G03280 43.921 403 202 10 80 464 84 480 4.79e-100 309
MS.gene09770.t1 AT1G14020 43.108 399 214 7 80 466 87 484 5.13e-99 306
MS.gene09770.t1 AT1G35510 40.920 435 229 9 54 468 133 559 7.46e-99 308
MS.gene09770.t1 AT5G15740 42.394 401 217 8 77 464 99 498 2.37e-97 303
MS.gene09770.t1 AT3G02250 43.142 401 214 8 77 464 99 498 4.88e-97 302
MS.gene09770.t1 AT1G38065 42.250 400 202 10 65 447 13 400 1.23e-96 299
MS.gene09770.t1 AT1G38065 43.570 381 192 9 84 447 36 410 1.43e-96 299
MS.gene09770.t1 AT2G37980 38.826 443 237 11 55 477 199 627 2.73e-96 304
MS.gene09770.t1 AT1G38131 43.570 381 192 9 84 447 155 529 5.33e-95 299
MS.gene09770.t1 AT3G26370 38.964 444 238 12 49 466 120 556 4.20e-94 296
MS.gene09770.t1 AT2G03280 41.163 430 202 11 80 464 84 507 5.01e-94 294
MS.gene09770.t1 AT5G64600 44.152 342 183 4 84 421 117 454 5.58e-93 292
MS.gene09770.t1 AT3G54100 38.128 438 246 12 51 472 190 618 6.15e-92 292
MS.gene09770.t1 AT1G22460 42.935 368 199 7 56 419 135 495 7.45e-92 290
MS.gene09770.t1 AT5G35570 40.416 433 220 12 56 466 225 641 2.05e-90 289
MS.gene09770.t1 AT1G04910 36.966 468 270 10 7 466 25 475 2.65e-89 282
MS.gene09770.t1 AT1G62330 35.914 465 241 13 53 466 192 650 4.62e-89 285
MS.gene09770.t1 AT5G01100 37.408 409 235 9 55 453 190 587 1.87e-86 278
MS.gene09770.t1 AT1G11990 38.272 405 227 10 55 440 163 563 4.95e-85 273
MS.gene09770.t1 AT4G24530 35.491 479 257 13 31 466 48 517 2.65e-84 269
MS.gene09770.t1 AT1G29200 38.298 423 216 9 58 436 43 464 1.30e-83 266
MS.gene09770.t1 AT1G29200 38.298 423 216 9 58 436 43 464 1.30e-83 266
MS.gene09770.t1 AT1G29200 38.298 423 216 9 58 436 159 580 2.03e-82 267
MS.gene09770.t1 AT5G65470 34.967 449 249 11 55 465 59 502 7.94e-80 257
MS.gene09770.t1 AT1G29200 39.130 391 194 8 89 436 1 390 3.80e-79 253
MS.gene09770.t1 AT1G11990 35.068 442 227 11 55 440 148 585 1.18e-78 257
MS.gene09770.t1 AT2G44500 38.551 428 234 12 55 465 146 561 6.62e-77 251
MS.gene09770.t1 AT5G63390 36.667 420 253 8 55 465 133 548 7.12e-75 246
MS.gene09770.t1 AT3G07900 37.731 432 252 10 47 467 149 574 1.11e-73 243
MS.gene09770.t1 AT1G52630 32.059 340 214 7 84 419 74 400 1.64e-50 178
MS.gene09770.t1 AT3G26370 36.364 253 140 7 49 285 120 367 1.03e-45 164
MS.gene09770.t1 AT3G30300 35.294 306 176 9 68 356 87 387 1.91e-45 169
MS.gene09770.t1 AT3G30300 35.294 306 176 9 68 356 87 387 1.91e-45 169
MS.gene09770.t1 AT1G52630 30.120 332 199 7 100 419 2 312 6.85e-45 160
MS.gene09770.t1 AT3G03810 34.106 302 183 8 73 359 79 379 9.53e-43 160
MS.gene09770.t1 AT3G03810 34.106 302 183 8 73 359 79 379 9.53e-43 160
MS.gene09770.t1 AT2G44500 36.641 262 157 4 55 310 146 404 1.71e-40 150
MS.gene09770.t1 AT3G21190 28.235 340 195 12 84 411 90 392 4.62e-27 113
MS.gene09770.t1 AT1G51630 27.941 340 196 12 84 411 91 393 1.18e-25 109

Find 96 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCATGCCTTAACCTTTC+TGG 0.108482 5.1:-5942762 None:intergenic
GGTTTAATTTCGCTTCTTAC+TGG 0.232835 5.1:+5938522 MS.gene09770:CDS
TGTTTATAATAGGAGATATA+TGG 0.246061 5.1:+5942655 MS.gene09770:intron
ATTGATCTCATCACCTTATC+AGG 0.260179 5.1:-5939902 None:intergenic
CTTGGGACACGCATTGTATA+TGG 0.264993 5.1:-5939935 None:intergenic
AAATTGTCTAAATATTATTA+TGG 0.273003 5.1:+5938760 MS.gene09770:CDS
CCTGAAAAGGCTAGCATATC+TGG 0.273488 5.1:-5940654 None:intergenic
CCTCGCTTCCGTTCTCCATC+TGG 0.279056 5.1:-5941305 None:intergenic
AGTTGGATCATCATTCTTAT+TGG 0.287747 5.1:+5939702 MS.gene09770:CDS
CATGACGATCTCGTGGTCTT+TGG 0.289859 5.1:+5938473 None:intergenic
ATCTCCTTTGTATAGATGTT+AGG 0.318976 5.1:-5941464 None:intergenic
GTGCTAAGCTTCTTTGCATT+TGG 0.323021 5.1:-5942698 None:intergenic
AACTTGATCAAGATAATAAT+CGG 0.343642 5.1:-5939969 None:intergenic
ATCTCGTGGTCTTTGGTTTG+TGG 0.362348 5.1:+5938480 MS.gene09770:CDS
GCTCTCCCATGAATCCTCTT+TGG 0.363004 5.1:-5942781 None:intergenic
GTTGCATCGGGAGAAATATA+TGG 0.373675 5.1:+5941404 MS.gene09770:CDS
GTTTGACCAAGTTCTTGAAT+AGG 0.379703 5.1:-5940283 None:intergenic
ACCGTGCACCAATTGATATA+TGG 0.382336 5.1:+5938731 MS.gene09770:CDS
AGCTTGGTGAAATCAGAAAA+AGG 0.386962 5.1:+5940712 MS.gene09770:CDS
ACCTGTCGTCTCAAAAGAAT+TGG 0.388497 5.1:-5939995 None:intergenic
TTGGGACACGCATTGTATAT+GGG 0.397785 5.1:-5939934 None:intergenic
TTAGATTTCCATATATCAAT+TGG 0.403180 5.1:-5938739 None:intergenic
GGATTGAATCAACAAAGAAC+TGG 0.404396 5.1:+5939539 MS.gene09770:CDS
CCTTCGACCAGCTAAAATCT+TGG 0.408772 5.1:-5941603 None:intergenic
GGCATGCCAAAGAGGATTCA+TGG 0.413310 5.1:+5942775 MS.gene09770:CDS
TAATCGGGTTCTGATTTCCT+TGG 0.421676 5.1:-5939953 None:intergenic
GTTTATAATAGGAGATATAT+GGG 0.423059 5.1:+5942656 MS.gene09770:intron
CGTCCAGGTCTCATCTCATC+TGG 0.430826 5.1:-5942803 None:intergenic
TTGTTGATTCAATCCTCCAC+TGG 0.432521 5.1:-5939531 None:intergenic
AATCGGGTTCTGATTTCCTT+GGG 0.434363 5.1:-5939952 None:intergenic
CCCACTTCATGAGGAGTAAG+AGG 0.434476 5.1:-5941335 None:intergenic
TCTCCTTTGTATAGATGTTA+GGG 0.441328 5.1:-5941463 None:intergenic
GTTTCATAGCAGTCCATTTG+AGG 0.448307 5.1:+5940338 MS.gene09770:CDS
ACATGCTTTCTGATCTTGAA+TGG 0.450545 5.1:+5938547 MS.gene09770:CDS
TACCTTCGCCAGAAAGGTTA+AGG 0.454344 5.1:+5942754 MS.gene09770:CDS
ACCAAAATAACAACCTGAAA+AGG 0.486933 5.1:-5940667 None:intergenic
GAGAAAGAAAGAAATGAGCT+TGG 0.488177 5.1:+5940696 MS.gene09770:CDS
TCTCTCACAAACACAAGAGC+TGG 0.490882 5.1:-5942846 None:intergenic
TGCCTTAACCTTTCTGGCGA+AGG 0.491638 5.1:-5942756 None:intergenic
ACAAAACCTATTCAAGAACT+TGG 0.495920 5.1:+5940277 MS.gene09770:CDS
GTAGTCTACAGCGGCTAGGC+GGG 0.497730 5.1:-5941528 None:intergenic
GCGGCTAGGCGGGATGAGAA+TGG 0.503816 5.1:-5941518 None:intergenic
TGTCAAAAGAGTTCCTGATA+AGG 0.507750 5.1:+5939889 MS.gene09770:CDS
GGTTTGATGTTACGCGCACT+TGG 0.513582 5.1:+5941356 MS.gene09770:CDS
CACATACCTCTATGTTGCAT+CGG 0.516486 5.1:+5941391 MS.gene09770:CDS
TGAATGGTATTCTCATCGAT+TGG 0.519424 5.1:+5938563 MS.gene09770:CDS
CGGGATGAGAATGGAAGAAA+AGG 0.524026 5.1:-5941509 None:intergenic
CGGGAAGGCATCAGATGGAC+TGG 0.526918 5.1:+5942729 MS.gene09770:CDS
TGGGACACGCATTGTATATG+GGG 0.528406 5.1:-5939933 None:intergenic
ACATACCTCTATGTTGCATC+GGG 0.530349 5.1:+5941392 MS.gene09770:CDS
GGATCATCATTCTTATTGGA+AGG 0.535696 5.1:+5939706 MS.gene09770:CDS
ACTTGATCAAGATAATAATC+GGG 0.536000 5.1:-5939968 None:intergenic
TCAAATGGACTGCTATGAAA+CGG 0.539398 5.1:-5940336 None:intergenic
TCCTCTTACTCCTCATGAAG+TGG 0.539526 5.1:+5941334 MS.gene09770:CDS
CCTCTTACTCCTCATGAAGT+GGG 0.541378 5.1:+5941335 MS.gene09770:CDS
TTGCTTATTGCAGCCAGTGG+AGG 0.542071 5.1:+5939518 MS.gene09770:CDS
GAGCCAGATGAGATGAGACC+TGG 0.545176 5.1:+5942800 MS.gene09770:CDS
TGATAAGGTGATGAGATCAA+TGG 0.547039 5.1:+5939904 MS.gene09770:CDS
CTGGCATACCTTCGCCAGAA+AGG 0.547774 5.1:+5942748 MS.gene09770:CDS
AAATAGGATTTGAGTCCAGA+TGG 0.553327 5.1:+5941290 MS.gene09770:intron
CTCTCACAAACACAAGAGCT+GGG 0.560650 5.1:-5942845 None:intergenic
GCATGCCAAAGAGGATTCAT+GGG 0.563632 5.1:+5942776 MS.gene09770:CDS
TGTTACGAGAATGCAGAAGA+TGG 0.570027 5.1:+5940309 MS.gene09770:CDS
TCCATATATCAATTGGTGCA+CGG 0.574106 5.1:-5938732 None:intergenic
TACTTGCTTATTGCAGCCAG+TGG 0.574430 5.1:+5939515 MS.gene09770:CDS
TCGTGATGGTCATCTCGTCC+AGG 0.574549 5.1:-5942818 None:intergenic
ATTCTTATTGGAAGGATGAG+AGG 0.587254 5.1:+5939714 MS.gene09770:CDS
ACGAATTCTTAATGCTACGC+TGG 0.588010 5.1:+5939670 MS.gene09770:CDS
ATTTGAGTCCAGATGGAGAA+CGG 0.597126 5.1:+5941297 MS.gene09770:CDS
TTTCCCTAACATCTATACAA+AGG 0.599447 5.1:+5941460 MS.gene09770:CDS
TACTAACAACAATGGCAACA+TGG 0.600721 5.1:+5941580 MS.gene09770:CDS
GATTGAATCAACAAAGAACT+GGG 0.605354 5.1:+5939540 MS.gene09770:CDS
CAGATGGAGAACGGAAGCGA+GGG 0.610738 5.1:+5941306 MS.gene09770:CDS
CCAGATGGAGAACGGAAGCG+AGG 0.610998 5.1:+5941305 MS.gene09770:CDS
AACATCAAACCCACTTCATG+AGG 0.611141 5.1:-5941344 None:intergenic
TACGCTGGTTGTACCTGAGT+TGG 0.611847 5.1:+5939685 MS.gene09770:CDS
TTTCTCCCGATGCAACATAG+AGG 0.613162 5.1:-5941397 None:intergenic
CAATGTAGTCTACAGCGGCT+AGG 0.614499 5.1:-5941532 None:intergenic
GGGACACGCATTGTATATGG+GGG 0.616024 5.1:-5939932 None:intergenic
CATATACAATGCGTGTCCCA+AGG 0.618244 5.1:+5939936 MS.gene09770:CDS
GTATTTGTTACTAACAACAA+TGG 0.620898 5.1:+5941572 MS.gene09770:CDS
TGTAGTCTACAGCGGCTAGG+CGG 0.622536 5.1:-5941529 None:intergenic
TAAGAATGATGATCCAACTC+AGG 0.623565 5.1:-5939698 None:intergenic
ATCGGGAGAAATATATGGAG+GGG 0.625932 5.1:+5941409 MS.gene09770:CDS
AAGGTTAAGGCATGCCAAAG+AGG 0.627153 5.1:+5942767 MS.gene09770:CDS
GCATCGGGAGAAATATATGG+AGG 0.640908 5.1:+5941407 MS.gene09770:CDS
CATCGGGAGAAATATATGGA+GGG 0.644373 5.1:+5941408 MS.gene09770:CDS
GTGCGTGAGCAGATGTCGAA+TGG 0.645428 5.1:+5939491 MS.gene09770:CDS
TATTATGGATGCAGTGACAG+AGG 0.653385 5.1:+5938775 MS.gene09770:CDS
TTAGGGAAAAGATCTTTGAG+AGG 0.654145 5.1:-5941446 None:intergenic
TCAAAGCATGGAAATTAACA+CGG 0.662029 5.1:-5940249 None:intergenic
AAGAGCTGGGAAATTCGTGA+TGG 0.664397 5.1:-5942832 None:intergenic
AGAACAACATGACGATCTCG+TGG 0.676268 5.1:+5938466 None:intergenic
GAAACTTACGAGCATAATCG+CGG 0.695542 5.1:-5938798 None:intergenic
ATTGAATCAACAAAGAACTG+GGG 0.728844 5.1:+5939541 MS.gene09770:CDS
ACAAACAATGTAGTCTACAG+CGG 0.728868 5.1:-5941537 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGTCTAAATATTATTA+TGG + chr5.1:5938760-5938779 MS.gene09770:CDS 10.0%
!! TAAAAATAGAAAGATTAATA+AGG - chr5.1:5938638-5938657 None:intergenic 10.0%
!!! TTTTGATTTATATTAGAAAT+AGG + chr5.1:5941812-5941831 MS.gene09770:intron 10.0%
!! AAAATTTAAAAAATAACACG+TGG + chr5.1:5941008-5941027 MS.gene09770:intron 15.0%
!! ATTGTTAATTGCAATTAAAA+AGG - chr5.1:5940604-5940623 None:intergenic 15.0%
!! TATTTGTTTACTTATACTTT+GGG + chr5.1:5940449-5940468 MS.gene09770:intron 15.0%
!!! GCTTGAAATTTTTATTTTAA+TGG + chr5.1:5940028-5940047 MS.gene09770:intron 15.0%
!!! TAGTTATTTTGATTTCTTTT+AGG + chr5.1:5938699-5938718 MS.gene09770:intron 15.0%
!!! TAGTTTTTTTTTTCTTCTTA+GGG - chr5.1:5940933-5940952 None:intergenic 15.0%
!!! TTTTAAATTTTTTTGGACTT+GGG - chr5.1:5940999-5941018 None:intergenic 15.0%
!!! TTTTGTAGTTTTTTTTCTTA+GGG + chr5.1:5941121-5941140 MS.gene09770:intron 15.0%
!!! TTTTTAAATTTTTTTGGACT+TGG - chr5.1:5941000-5941019 None:intergenic 15.0%
!! AAATAAAAATTTCAAGCAAG+TGG - chr5.1:5940025-5940044 None:intergenic 20.0%
!! AACTTGATCAAGATAATAAT+CGG - chr5.1:5939972-5939991 None:intergenic 20.0%
!! AATAGAAAGATTAATAAGGA+AGG - chr5.1:5938634-5938653 None:intergenic 20.0%
!! AATGTTAGAAATAAGAGTTT+GGG + chr5.1:5940565-5940584 MS.gene09770:intron 20.0%
!! ACAAAAAAGAAAAAACTTGT+AGG - chr5.1:5938968-5938987 None:intergenic 20.0%
!! ACAAATAATGTGATAGAAAT+AGG - chr5.1:5939185-5939204 None:intergenic 20.0%
!! ACAAATCTTGTATGATATAA+AGG + chr5.1:5942177-5942196 MS.gene09770:intron 20.0%
!! ATAAATGATCTTCTTAAGAA+TGG + chr5.1:5939401-5939420 MS.gene09770:intron 20.0%
!! CATATAAGAATCAAGTTTAA+TGG + chr5.1:5939762-5939781 MS.gene09770:intron 20.0%
!! CATTAAACTTGATTCTTATA+TGG - chr5.1:5939764-5939783 None:intergenic 20.0%
!! GATTTATATTAGAAATAGGT+GGG + chr5.1:5941816-5941835 MS.gene09770:intron 20.0%
!! GTATTTGTTTACTTATACTT+TGG + chr5.1:5940448-5940467 MS.gene09770:intron 20.0%
!! GTTTATAATAGGAGATATAT+GGG + chr5.1:5942656-5942675 MS.gene09770:intron 20.0%
!! TAAATGATCTTCTTAAGAAT+GGG + chr5.1:5939402-5939421 MS.gene09770:intron 20.0%
!! TATCCTCAATTATTAACTAT+TGG - chr5.1:5942284-5942303 None:intergenic 20.0%
!! TGATTTATATTAGAAATAGG+TGG + chr5.1:5941815-5941834 MS.gene09770:intron 20.0%
!! TGTTCGTTTATTACATAAAT+GGG + chr5.1:5941659-5941678 MS.gene09770:intron 20.0%
!! TGTTTATAATAGGAGATATA+TGG + chr5.1:5942655-5942674 MS.gene09770:intron 20.0%
!! TTAGATTTCCATATATCAAT+TGG - chr5.1:5938742-5938761 None:intergenic 20.0%
!! TTATGTAATAAACGAACAAA+AGG - chr5.1:5941657-5941676 None:intergenic 20.0%
!! TTCAATTTCAAAACATTGTA+AGG - chr5.1:5940385-5940404 None:intergenic 20.0%
!! TTGAAAAAGAATGGTAAATA+AGG - chr5.1:5942316-5942335 None:intergenic 20.0%
!! TTGTTCGTTTATTACATAAA+TGG + chr5.1:5941658-5941677 MS.gene09770:intron 20.0%
!! TTTAGATTACAACGTTAATT+AGG - chr5.1:5942245-5942264 None:intergenic 20.0%
!! TTTCCAATAGTTAATAATTG+AGG + chr5.1:5942278-5942297 MS.gene09770:intron 20.0%
!!! AGTTTTTTTTTTCTTCTTAG+GGG - chr5.1:5940932-5940951 None:intergenic 20.0%
!!! ATTTTGATTTCTTTTAGGAT+GGG + chr5.1:5938704-5938723 MS.gene09770:intron 20.0%
!!! CAAGTTTTTTCTTTTTTGTT+TGG + chr5.1:5938969-5938988 MS.gene09770:intron 20.0%
!!! GTAGTTTTTTTTTTCTTCTT+AGG - chr5.1:5940934-5940953 None:intergenic 20.0%
!!! GTTTTGTAGTTTTTTTTCTT+AGG + chr5.1:5941120-5941139 MS.gene09770:intron 20.0%
!!! TAACAAGTTATACTTTTCAT+AGG - chr5.1:5942402-5942421 None:intergenic 20.0%
!!! TATTTTGATTTCTTTTAGGA+TGG + chr5.1:5938703-5938722 MS.gene09770:intron 20.0%
!!! TGCATAGCAAAATAATTTTT+AGG - chr5.1:5941197-5941216 None:intergenic 20.0%
!!! TTTAAATTTTTTTGGACTTG+GGG - chr5.1:5940998-5941017 None:intergenic 20.0%
!!! TTTGTAGTTTTTTTTCTTAG+GGG + chr5.1:5941122-5941141 MS.gene09770:intron 20.0%
!!! TTTTCTTTTTTGTTTGGATT+CGG + chr5.1:5938975-5938994 MS.gene09770:intron 20.0%
! AACTCTACAGTTTGAATATT+AGG - chr5.1:5942213-5942232 None:intergenic 25.0%
! AAGAAAATGCTATAATTGCA+GGG + chr5.1:5939141-5939160 MS.gene09770:intron 25.0%
! ACTTGATCAAGATAATAATC+GGG - chr5.1:5939971-5939990 None:intergenic 25.0%
! AGTATGTATATCATAGATTC+AGG + chr5.1:5942502-5942521 MS.gene09770:intron 25.0%
! ATAGTGATGATTATTCTGTT+AGG + chr5.1:5941760-5941779 MS.gene09770:intron 25.0%
! ATGACAAAGTTGAAAAAGAA+TGG - chr5.1:5942325-5942344 None:intergenic 25.0%
! ATGCATTCTAAGTAAAAATC+AGG + chr5.1:5940888-5940907 MS.gene09770:intron 25.0%
! ATTCTGTGTATATTCATAGT+TGG + chr5.1:5938856-5938875 MS.gene09770:intron 25.0%
! ATTGTATCATTAGAAGTCAA+TGG - chr5.1:5940766-5940785 None:intergenic 25.0%
! CAATGTTAGAAATAAGAGTT+TGG + chr5.1:5940564-5940583 MS.gene09770:intron 25.0%
! CATATTGAATGTTTCATTTG+TGG + chr5.1:5939312-5939331 MS.gene09770:intron 25.0%
! GAACAAACCAAAATACAAAA+TGG - chr5.1:5939377-5939396 None:intergenic 25.0%
! GTAAGAATACAAAACTACTA+TGG + chr5.1:5941625-5941644 MS.gene09770:intron 25.0%
! TAAAGCTTGTATATGGAATT+TGG + chr5.1:5942435-5942454 MS.gene09770:intron 25.0%
! TTCAGAAATAAAATTGGACA+TGG + chr5.1:5942113-5942132 MS.gene09770:intron 25.0%
!! CACTTCTCTTTGTTTATAAT+AGG + chr5.1:5942645-5942664 MS.gene09770:intron 25.0%
!! CACTTTCTTCTTTTCATAAT+CGG + chr5.1:5939454-5939473 MS.gene09770:intron 25.0%
!! GCTTTTTAACCAAAAATCAA+AGG - chr5.1:5942614-5942633 None:intergenic 25.0%
!! GTATTTGTTACTAACAACAA+TGG + chr5.1:5941572-5941591 MS.gene09770:CDS 25.0%
!! TCAAATCCTATTTTATCACA+AGG - chr5.1:5941283-5941302 None:intergenic 25.0%
!! TCAATATTTTCGATGTTGAT+TGG + chr5.1:5939834-5939853 MS.gene09770:CDS 25.0%
!! TTTCATAGGAATTTTTGCTT+TGG - chr5.1:5942388-5942407 None:intergenic 25.0%
!! TTTTACTTAGAATGCATATC+AGG - chr5.1:5940885-5940904 None:intergenic 25.0%
!!! AAAAGTATAACTTGTTACAG+GGG + chr5.1:5942405-5942424 MS.gene09770:intron 25.0%
!!! AAAGAGAAGTGTTTAAAAGA+AGG - chr5.1:5942636-5942655 None:intergenic 25.0%
!!! CAAACTCTTATTTCTAACAT+TGG - chr5.1:5940566-5940585 None:intergenic 25.0%
!!! GAAAAGTATAACTTGTTACA+GGG + chr5.1:5942404-5942423 MS.gene09770:intron 25.0%
!!! GGTTTAATGCTTTTTGTTTT+GGG + chr5.1:5938501-5938520 MS.gene09770:CDS 25.0%
!!! GTTTTTTTTTTCTTCTTAGG+GGG - chr5.1:5940931-5940950 None:intergenic 25.0%
!!! TCCAATTTTATTTCTGAACA+GGG - chr5.1:5942111-5942130 None:intergenic 25.0%
!!! TGAAAAGTATAACTTGTTAC+AGG + chr5.1:5942403-5942422 MS.gene09770:intron 25.0%
!!! TGGTTTAATGCTTTTTGTTT+TGG + chr5.1:5938500-5938519 MS.gene09770:CDS 25.0%
!!! TTAAATTTTTTTGGACTTGG+GGG - chr5.1:5940997-5941016 None:intergenic 25.0%
!!! TTGTAGTTTTTTTTCTTAGG+GGG + chr5.1:5941123-5941142 MS.gene09770:intron 25.0%
AAGGTTGAGGTAAAAAAAGT+AGG - chr5.1:5942595-5942614 None:intergenic 30.0%
AATAAAATTGGACATGGTTG+TGG + chr5.1:5942119-5942138 MS.gene09770:intron 30.0%
ACAAAACCTATTCAAGAACT+TGG + chr5.1:5940277-5940296 MS.gene09770:CDS 30.0%
ACAACAACATCTGTATATGT+AGG + chr5.1:5939079-5939098 MS.gene09770:intron 30.0%
ACCAAAATAACAACCTGAAA+AGG - chr5.1:5940670-5940689 None:intergenic 30.0%
ACCCTGTTCAGAAATAAAAT+TGG + chr5.1:5942107-5942126 MS.gene09770:intron 30.0%
AGTTGGATCATCATTCTTAT+TGG + chr5.1:5939702-5939721 MS.gene09770:CDS 30.0%
ATCTCCTTTGTATAGATGTT+AGG - chr5.1:5941467-5941486 None:intergenic 30.0%
ATTGAATCAACAAAGAACTG+GGG + chr5.1:5939541-5939560 MS.gene09770:CDS 30.0%
CAACAACATCTGTATATGTA+GGG + chr5.1:5939080-5939099 MS.gene09770:intron 30.0%
CAAGAAAATGCTATAATTGC+AGG + chr5.1:5939140-5939159 MS.gene09770:intron 30.0%
CAGAAAAGAAAAACCTCAAA+TGG - chr5.1:5940354-5940373 None:intergenic 30.0%
CATTTAAACGCAATCAACAA+AGG + chr5.1:5941703-5941722 MS.gene09770:intron 30.0%
CTTGATGAAACATAAGAACT+TGG + chr5.1:5940076-5940095 MS.gene09770:intron 30.0%
CTTGTATATGGAATTTGGTT+TGG + chr5.1:5942440-5942459 MS.gene09770:intron 30.0%
GAAAAGAAGAAAGTGAGAAA+TGG - chr5.1:5939449-5939468 None:intergenic 30.0%
GATGAAGAATCATAATTGTC+CGG - chr5.1:5939624-5939643 None:intergenic 30.0%
GATTGAATCAACAAAGAACT+GGG + chr5.1:5939540-5939559 MS.gene09770:CDS 30.0%
GTTTCATCAAGACAGTTATT+TGG - chr5.1:5940067-5940086 None:intergenic 30.0%
GTTTCTGTAAAGCTTGTATA+TGG + chr5.1:5942428-5942447 MS.gene09770:intron 30.0%
TAACATTAAGGAGATGTTTC+AGG + chr5.1:5940156-5940175 MS.gene09770:intron 30.0%
TAACCAAAAATCAAAGGTTG+AGG - chr5.1:5942608-5942627 None:intergenic 30.0%
TATGTTTCAAGAAACAGTGT+AGG - chr5.1:5940861-5940880 None:intergenic 30.0%
TCAAAGCATGGAAATTAACA+CGG - chr5.1:5940252-5940271 None:intergenic 30.0%
TCTCCTTTGTATAGATGTTA+GGG - chr5.1:5941466-5941485 None:intergenic 30.0%
TGATTGAGCAACTAACATTA+AGG + chr5.1:5940144-5940163 MS.gene09770:intron 30.0%
TGCTACAGTTGAAAAACTTA+GGG - chr5.1:5940966-5940985 None:intergenic 30.0%
TGTAATAAACGAACAAAAGG+AGG - chr5.1:5941654-5941673 None:intergenic 30.0%
TTGTTGCCTTGTGATAAAAT+AGG + chr5.1:5941274-5941293 MS.gene09770:intron 30.0%
TTTATGTTCTGTTTATTCGC+TGG + chr5.1:5941883-5941902 MS.gene09770:intron 30.0%
TTTCCCTAACATCTATACAA+AGG + chr5.1:5941460-5941479 MS.gene09770:CDS 30.0%
! AAGAGCTCCATTTTGTATTT+TGG + chr5.1:5939367-5939386 MS.gene09770:intron 30.0%
! ACATACTTTTGCATCAAGTT+TGG - chr5.1:5942489-5942508 None:intergenic 30.0%
! ACCAATCTAGAGTAAAAAGT+AGG - chr5.1:5938594-5938613 None:intergenic 30.0%
! CCAATCTAGAGTAAAAAGTA+GGG - chr5.1:5938593-5938612 None:intergenic 30.0%
! GAAACATAAGAACTTGGTTT+TGG + chr5.1:5940082-5940101 MS.gene09770:intron 30.0%
! TTACTTATACTTTGGGTTTG+TGG + chr5.1:5940456-5940475 MS.gene09770:intron 30.0%
!! AAAGTATAACTTGTTACAGG+GGG + chr5.1:5942406-5942425 MS.gene09770:intron 30.0%
!! ATGAGACTTTTGATTATGAC+CGG + chr5.1:5939602-5939621 MS.gene09770:intron 30.0%
!! TTACCTCAACCTTTGATTTT+TGG + chr5.1:5942602-5942621 MS.gene09770:intron 30.0%
!! TTTTTCAACTGTAGCAGTTT+TGG + chr5.1:5940970-5940989 MS.gene09770:intron 30.0%
!!! GAGTTGATTTGATTTTTCGT+TGG + chr5.1:5942362-5942381 MS.gene09770:intron 30.0%
!!! GTCCAATTTTATTTCTGAAC+AGG - chr5.1:5942112-5942131 None:intergenic 30.0%
!!! TAAATTTTTTTGGACTTGGG+GGG - chr5.1:5940996-5941015 None:intergenic 30.0%
!!! TTGCTACTTTTATGAAGTGA+AGG - chr5.1:5942086-5942105 None:intergenic 30.0%
!!! TTTCAGGTTGTTATTTTGGT+GGG + chr5.1:5940670-5940689 MS.gene09770:CDS 30.0%
!!! TTTTCAGGTTGTTATTTTGG+TGG + chr5.1:5940669-5940688 MS.gene09770:CDS 30.0%
AAAGTCAGCACTGTTAAGAA+AGG - chr5.1:5940825-5940844 None:intergenic 35.0%
AAATAGGATTTGAGTCCAGA+TGG + chr5.1:5941290-5941309 MS.gene09770:intron 35.0%
ACAAACAATGTAGTCTACAG+CGG - chr5.1:5941540-5941559 None:intergenic 35.0%
ACATGCTTTCTGATCTTGAA+TGG + chr5.1:5938547-5938566 MS.gene09770:CDS 35.0%
AGCTATTCCATTACTAGATG+TGG - chr5.1:5941734-5941753 None:intergenic 35.0%
ATCGCAACTTTGTGAAAGTT+AGG + chr5.1:5941151-5941170 MS.gene09770:intron 35.0%
ATTCTTATTGGAAGGATGAG+AGG + chr5.1:5939714-5939733 MS.gene09770:CDS 35.0%
ATTGATCTCATCACCTTATC+AGG - chr5.1:5939905-5939924 None:intergenic 35.0%
CCATATGTCGATGAAAAACT+CGG + chr5.1:5942869-5942888 MS.gene09770:CDS 35.0%
CTACAGTTGAAAAACTTAGG+GGG - chr5.1:5940964-5940983 None:intergenic 35.0%
CTGCTACAGTTGAAAAACTT+AGG - chr5.1:5940967-5940986 None:intergenic 35.0%
GAGAAAGAAAGAAATGAGCT+TGG + chr5.1:5940696-5940715 MS.gene09770:CDS 35.0%
GCTACAGTTGAAAAACTTAG+GGG - chr5.1:5940965-5940984 None:intergenic 35.0%
GGATCATCATTCTTATTGGA+AGG + chr5.1:5939706-5939725 MS.gene09770:CDS 35.0%
GGATTGAATCAACAAAGAAC+TGG + chr5.1:5939539-5939558 MS.gene09770:CDS 35.0%
GGCATTCTTCTATTCAGAAA+AGG + chr5.1:5941904-5941923 MS.gene09770:intron 35.0%
GTTTGACCAAGTTCTTGAAT+AGG - chr5.1:5940286-5940305 None:intergenic 35.0%
TAAGAATGATGATCCAACTC+AGG - chr5.1:5939701-5939720 None:intergenic 35.0%
TACTAACAACAATGGCAACA+TGG + chr5.1:5941580-5941599 MS.gene09770:CDS 35.0%
TCCATATATCAATTGGTGCA+CGG - chr5.1:5938735-5938754 None:intergenic 35.0%
TCGCAACTTTGTGAAAGTTA+GGG + chr5.1:5941152-5941171 MS.gene09770:intron 35.0%
TCTAAACCACATTTGGAGAA+TGG - chr5.1:5942054-5942073 None:intergenic 35.0%
TGAATGGTATTCTCATCGAT+TGG + chr5.1:5938563-5938582 MS.gene09770:CDS 35.0%
TGATAAGGTGATGAGATCAA+TGG + chr5.1:5939904-5939923 MS.gene09770:CDS 35.0%
TGTCAAAAGAGTTCCTGATA+AGG + chr5.1:5939889-5939908 MS.gene09770:CDS 35.0%
TTAGGGAAAAGATCTTTGAG+AGG - chr5.1:5941449-5941468 None:intergenic 35.0%
TTGGTGAAATCAGAAAAAGG+TGG + chr5.1:5940715-5940734 MS.gene09770:CDS 35.0%
! AGCTTGGTGAAATCAGAAAA+AGG + chr5.1:5940712-5940731 MS.gene09770:CDS 35.0%
! CAACAGTTTTCGAATTTGCA+AGG - chr5.1:5939002-5939021 None:intergenic 35.0%
! CTTTCACAAAGTTGCGATTT+TGG - chr5.1:5941149-5941168 None:intergenic 35.0%
! GGTTTAATTTCGCTTCTTAC+TGG + chr5.1:5938522-5938541 MS.gene09770:CDS 35.0%
! GTTTTGTGAATCTCAAAGCA+TGG - chr5.1:5940264-5940283 None:intergenic 35.0%
!! TCAAATGGACTGCTATGAAA+CGG - chr5.1:5940339-5940358 None:intergenic 35.0%
!! TCAATGGATTGTAGTCTTAC+TGG - chr5.1:5940750-5940769 None:intergenic 35.0%
!! TGGCAGTGTTTTTGTGAATT+TGG + chr5.1:5940110-5940129 MS.gene09770:intron 35.0%
!! TGTTTTTGTGAATTTGGCTG+TGG + chr5.1:5940116-5940135 MS.gene09770:intron 35.0%
!!! AGAACTTGGTTTTGGTCAAT+TGG + chr5.1:5940090-5940109 MS.gene09770:intron 35.0%
!!! CCCTACTTTTTACTCTAGAT+TGG + chr5.1:5938590-5938609 MS.gene09770:CDS 35.0%
!!! GCCTTTTCAGGTTGTTATTT+TGG + chr5.1:5940666-5940685 MS.gene09770:CDS 35.0%
!!! TTCAGGTTGTTATTTTGGTG+GGG + chr5.1:5940671-5940690 MS.gene09770:CDS 35.0%
AACAAAGAACTGGGGTAAGT+AGG + chr5.1:5939549-5939568 MS.gene09770:intron 40.0%
AACATCAAACCCACTTCATG+AGG - chr5.1:5941347-5941366 None:intergenic 40.0%
ACAGTAGAATAGGTGGGAAT+TGG + chr5.1:5942142-5942161 MS.gene09770:intron 40.0%
ACATACCTCTATGTTGCATC+GGG + chr5.1:5941392-5941411 MS.gene09770:CDS 40.0%
ACCGTGCACCAATTGATATA+TGG + chr5.1:5938731-5938750 MS.gene09770:CDS 40.0%
ACCTGTCGTCTCAAAAGAAT+TGG - chr5.1:5939998-5940017 None:intergenic 40.0%
ACGAATTCTTAATGCTACGC+TGG + chr5.1:5939670-5939689 MS.gene09770:CDS 40.0%
ACTGCTGTATCGAGTGAAAT+GGG + chr5.1:5939280-5939299 MS.gene09770:intron 40.0%
ATCGGGAGAAATATATGGAG+GGG + chr5.1:5941409-5941428 MS.gene09770:CDS 40.0%
ATGGTTGTGGACAGTAGAAT+AGG + chr5.1:5942132-5942151 MS.gene09770:intron 40.0%
ATTAGAAATAGGTGGGAGAG+CGG + chr5.1:5941823-5941842 MS.gene09770:intron 40.0%
ATTTGAGTCCAGATGGAGAA+CGG + chr5.1:5941297-5941316 MS.gene09770:CDS 40.0%
CAACTACAGCATCTGTTATC+TGG - chr5.1:5939646-5939665 None:intergenic 40.0%
CACATACCTCTATGTTGCAT+CGG + chr5.1:5941391-5941410 MS.gene09770:CDS 40.0%
CATCGGGAGAAATATATGGA+GGG + chr5.1:5941408-5941427 MS.gene09770:CDS 40.0%
CCAAATGTGGTTTAGACCAT+AGG + chr5.1:5942058-5942077 MS.gene09770:intron 40.0%
CCAGACAAAACAAACTTGCA+GGG + chr5.1:5939110-5939129 MS.gene09770:intron 40.0%
CCTATGGTCTAAACCACATT+TGG - chr5.1:5942061-5942080 None:intergenic 40.0%
CGCAACTTTGTGAAAGTTAG+GGG + chr5.1:5941153-5941172 MS.gene09770:intron 40.0%
GAAACTTACGAGCATAATCG+CGG - chr5.1:5938801-5938820 None:intergenic 40.0%
GATTATTCTGTTAGGAAGCG+TGG + chr5.1:5941768-5941787 MS.gene09770:intron 40.0%
GCAACTTTGTGAAAGTTAGG+GGG + chr5.1:5941154-5941173 MS.gene09770:intron 40.0%
GGATTGTCCACATCTAGTAA+TGG + chr5.1:5941724-5941743 MS.gene09770:intron 40.0%
GTGCTAAGCTTCTTTGCATT+TGG - chr5.1:5942701-5942720 None:intergenic 40.0%
GTTGCATCGGGAGAAATATA+TGG + chr5.1:5941404-5941423 MS.gene09770:CDS 40.0%
GTTTCATAGCAGTCCATTTG+AGG + chr5.1:5940338-5940357 MS.gene09770:CDS 40.0%
TATTATGGATGCAGTGACAG+AGG + chr5.1:5938775-5938794 MS.gene09770:CDS 40.0%
TGATGACCATTCTCCAAATG+TGG + chr5.1:5942045-5942064 MS.gene09770:intron 40.0%
TGTTACGAGAATGCAGAAGA+TGG + chr5.1:5940309-5940328 MS.gene09770:CDS 40.0%
TTGGGACACGCATTGTATAT+GGG - chr5.1:5939937-5939956 None:intergenic 40.0%
TTGTGAATTTGGCTGTGGTA+AGG + chr5.1:5940121-5940140 MS.gene09770:intron 40.0%
TTGTGGACAGTAGAATAGGT+GGG + chr5.1:5942136-5942155 MS.gene09770:intron 40.0%
TTTGTGGTGTGTTGTGTTAG+TGG + chr5.1:5939328-5939347 MS.gene09770:intron 40.0%
! AATCGGGTTCTGATTTCCTT+GGG - chr5.1:5939955-5939974 None:intergenic 40.0%
! CCGAGTTTTTCATCGACATA+TGG - chr5.1:5942872-5942891 None:intergenic 40.0%
! GTTTTTGTAGCTCGTCATCA+AGG - chr5.1:5940222-5940241 None:intergenic 40.0%
! TAATCGGGTTCTGATTTCCT+TGG - chr5.1:5939956-5939975 None:intergenic 40.0%
!! AACATGGCCAAGATTTTAGC+TGG + chr5.1:5941596-5941615 MS.gene09770:CDS 40.0%
!! AAGCTTAGCACACTTTTTGC+GGG + chr5.1:5942710-5942729 MS.gene09770:CDS 40.0%
!! GAAGCTTAGCACACTTTTTG+CGG + chr5.1:5942709-5942728 MS.gene09770:CDS 40.0%
!! GCACGAGAAAGTTGATTTTG+AGG - chr5.1:5940497-5940516 None:intergenic 40.0%
!! TTATGAAGTGAAGGTGCCTA+TGG - chr5.1:5942077-5942096 None:intergenic 40.0%
!! TTGTTGATTCAATCCTCCAC+TGG - chr5.1:5939534-5939553 None:intergenic 40.0%
!!! CCTGCAAGTTTGTTTTGTCT+GGG - chr5.1:5939112-5939131 None:intergenic 40.0%
!!! TCAGGTTGTTATTTTGGTGG+GGG + chr5.1:5940672-5940691 MS.gene09770:CDS 40.0%
AAGAGCTGGGAAATTCGTGA+TGG - chr5.1:5942835-5942854 None:intergenic 45.0%
AAGGTTAAGGCATGCCAAAG+AGG + chr5.1:5942767-5942786 MS.gene09770:CDS 45.0%
AGCGTAGACCGAGTCAAAAT+TGG + chr5.1:5941054-5941073 MS.gene09770:intron 45.0%
AGTCTCCAACGTCAGCTTAT+TGG + chr5.1:5939027-5939046 MS.gene09770:intron 45.0%
CAGTTGAAAAACTTAGGGGG+CGG - chr5.1:5940961-5940980 None:intergenic 45.0%
CATATACAATGCGTGTCCCA+AGG + chr5.1:5939936-5939955 MS.gene09770:CDS 45.0%
CCCAGACAAAACAAACTTGC+AGG + chr5.1:5939109-5939128 MS.gene09770:intron 45.0%
CCTCTTACTCCTCATGAAGT+GGG + chr5.1:5941335-5941354 MS.gene09770:CDS 45.0%
CCTGAAAAGGCTAGCATATC+TGG - chr5.1:5940657-5940676 None:intergenic 45.0%
CCTTCGACCAGCTAAAATCT+TGG - chr5.1:5941606-5941625 None:intergenic 45.0%
CGGGATGAGAATGGAAGAAA+AGG - chr5.1:5941512-5941531 None:intergenic 45.0%
CTCGATACAGCAGTCTTTCA+AGG - chr5.1:5939274-5939293 None:intergenic 45.0%
CTCTCACAAACACAAGAGCT+GGG - chr5.1:5942848-5942867 None:intergenic 45.0%
CTTGGGACACGCATTGTATA+TGG - chr5.1:5939938-5939957 None:intergenic 45.0%
GACTGCTGTATCGAGTGAAA+TGG + chr5.1:5939279-5939298 MS.gene09770:intron 45.0%
GCATCGGGAGAAATATATGG+AGG + chr5.1:5941407-5941426 MS.gene09770:CDS 45.0%
GCATGCCAAAGAGGATTCAT+GGG + chr5.1:5942776-5942795 MS.gene09770:CDS 45.0%
GTCTCCAACGTCAGCTTATT+GGG + chr5.1:5939028-5939047 MS.gene09770:intron 45.0%
GTTGTGGACAGTAGAATAGG+TGG + chr5.1:5942135-5942154 MS.gene09770:intron 45.0%
TACCTTCGCCAGAAAGGTTA+AGG + chr5.1:5942754-5942773 MS.gene09770:CDS 45.0%
TACTTGCTTATTGCAGCCAG+TGG + chr5.1:5939515-5939534 MS.gene09770:CDS 45.0%
TCATGCACATGTGCTTCTGT+GGG + chr5.1:5942538-5942557 MS.gene09770:intron 45.0%
TCCTCTTACTCCTCATGAAG+TGG + chr5.1:5941334-5941353 MS.gene09770:CDS 45.0%
TCTCCAACGTCAGCTTATTG+GGG + chr5.1:5939029-5939048 MS.gene09770:intron 45.0%
TCTCTCACAAACACAAGAGC+TGG - chr5.1:5942849-5942868 None:intergenic 45.0%
TGCCACAGGTGCAAAACTTA+GGG + chr5.1:5941093-5941112 MS.gene09770:intron 45.0%
TGGGACACGCATTGTATATG+GGG - chr5.1:5939936-5939955 None:intergenic 45.0%
TTGGCATGCCTTAACCTTTC+TGG - chr5.1:5942765-5942784 None:intergenic 45.0%
TTTCTCCCGATGCAACATAG+AGG - chr5.1:5941400-5941419 None:intergenic 45.0%
! AATAAGAGTTTGGGATGCGC+AGG + chr5.1:5940574-5940593 MS.gene09770:intron 45.0%
! ATAAGAGTTTGGGATGCGCA+GGG + chr5.1:5940575-5940594 MS.gene09770:intron 45.0%
! TTTTGCACCTGTGGCAGTTT+TGG - chr5.1:5941089-5941108 None:intergenic 45.0%
!! ACCGAGTCAAAATTGGCCTT+GGG + chr5.1:5941061-5941080 MS.gene09770:intron 45.0%
!! ATCTCGTGGTCTTTGGTTTG+TGG + chr5.1:5938480-5938499 MS.gene09770:CDS 45.0%
!! TTAGCACACTTTTTGCGGGA+AGG + chr5.1:5942714-5942733 MS.gene09770:CDS 45.0%
!!! CCAAGATTTTAGCTGGTCGA+AGG + chr5.1:5941603-5941622 MS.gene09770:CDS 45.0%
!!! CCAGATATGCTAGCCTTTTC+AGG + chr5.1:5940654-5940673 MS.gene09770:CDS 45.0%
!!! CCCTGCAAGTTTGTTTTGTC+TGG - chr5.1:5939113-5939132 None:intergenic 45.0%
!!! GCCAATTCTTTTGAGACGAC+AGG + chr5.1:5939994-5940013 MS.gene09770:CDS 45.0%
!!! TTCTTTTGAGACGACAGGTG+TGG + chr5.1:5939999-5940018 MS.gene09770:intron 45.0%
!!! TGTTATTTTTTAAATTTTTT+TGG - chr5.1:5941006-5941025 None:intergenic 5.0%
AACACGTGGCACCTCACTTA+GGG + chr5.1:5941022-5941041 MS.gene09770:intron 50.0%
CAATGTAGTCTACAGCGGCT+AGG - chr5.1:5941535-5941554 None:intergenic 50.0%
CCACACTCTTGCTAGTCGAA+TGG - chr5.1:5940794-5940813 None:intergenic 50.0%
CCACAGGTGCAAAACTTAGG+GGG + chr5.1:5941095-5941114 MS.gene09770:intron 50.0%
CCATTCGACTAGCAAGAGTG+TGG + chr5.1:5940791-5940810 MS.gene09770:intron 50.0%
CCCACTTCATGAGGAGTAAG+AGG - chr5.1:5941338-5941357 None:intergenic 50.0%
CTCCAACGTCAGCTTATTGG+GGG + chr5.1:5939030-5939049 MS.gene09770:intron 50.0%
CTGCCACAGGTGCAAAACTT+AGG + chr5.1:5941092-5941111 MS.gene09770:intron 50.0%
GCCACAGGTGCAAAACTTAG+GGG + chr5.1:5941094-5941113 MS.gene09770:intron 50.0%
GCTCTCCCATGAATCCTCTT+TGG - chr5.1:5942784-5942803 None:intergenic 50.0%
GGAGAATGGTCATCACTCCT+TGG - chr5.1:5942040-5942059 None:intergenic 50.0%
GGCATGCCAAAGAGGATTCA+TGG + chr5.1:5942775-5942794 MS.gene09770:CDS 50.0%
GGGACACGCATTGTATATGG+GGG - chr5.1:5939935-5939954 None:intergenic 50.0%
GGTTTGATGTTACGCGCACT+TGG + chr5.1:5941356-5941375 MS.gene09770:CDS 50.0%
GTCATGCACATGTGCTTCTG+TGG + chr5.1:5942537-5942556 MS.gene09770:intron 50.0%
TAACACGTGGCACCTCACTT+AGG + chr5.1:5941021-5941040 MS.gene09770:intron 50.0%
TCCAACGTCAGCTTATTGGG+GGG + chr5.1:5939031-5939050 MS.gene09770:intron 50.0%
TTGCTTATTGCAGCCAGTGG+AGG + chr5.1:5939518-5939537 MS.gene09770:CDS 50.0%
! GACCGAGTCAAAATTGGCCT+TGG + chr5.1:5941060-5941079 MS.gene09770:intron 50.0%
! TAAGAGTTTGGGATGCGCAG+GGG + chr5.1:5940576-5940595 MS.gene09770:intron 50.0%
! TACGCTGGTTGTACCTGAGT+TGG + chr5.1:5939685-5939704 MS.gene09770:CDS 50.0%
! TGCCTTAACCTTTCTGGCGA+AGG - chr5.1:5942759-5942778 None:intergenic 50.0%
!! CCGAGTCAAAATTGGCCTTG+GGG + chr5.1:5941062-5941081 MS.gene09770:intron 50.0%
!! CGAGTCAAAATTGGCCTTGG+GGG + chr5.1:5941063-5941082 MS.gene09770:intron 50.0%
!!! CCCCAAGGCCAATTTTGACT+CGG - chr5.1:5941065-5941084 None:intergenic 50.0%
!!! TTTTGCGGGAAGGCATCAGA+TGG + chr5.1:5942724-5942743 MS.gene09770:CDS 50.0%
CAGATGGAGAACGGAAGCGA+GGG + chr5.1:5941306-5941325 MS.gene09770:CDS 55.0%
CAGGTGCAAAACTTAGGGGG+CGG + chr5.1:5941098-5941117 MS.gene09770:intron 55.0%
CCAACGTCAGCTTATTGGGG+GGG + chr5.1:5939032-5939051 MS.gene09770:intron 55.0%
CGTCCAGGTCTCATCTCATC+TGG - chr5.1:5942806-5942825 None:intergenic 55.0%
CTGGCATACCTTCGCCAGAA+AGG + chr5.1:5942748-5942767 MS.gene09770:CDS 55.0%
GAGCCAGATGAGATGAGACC+TGG + chr5.1:5942800-5942819 MS.gene09770:CDS 55.0%
GGTCATCACTCCTTGGCAGA+GGG - chr5.1:5942033-5942052 None:intergenic 55.0%
GTGCGTGAGCAGATGTCGAA+TGG + chr5.1:5939491-5939510 MS.gene09770:CDS 55.0%
TCGTGATGGTCATCTCGTCC+AGG - chr5.1:5942821-5942840 None:intergenic 55.0%
TGGTCATCACTCCTTGGCAG+AGG - chr5.1:5942034-5942053 None:intergenic 55.0%
TGTAGTCTACAGCGGCTAGG+CGG - chr5.1:5941532-5941551 None:intergenic 55.0%
! CCCCCTAAGTTTTGCACCTG+TGG - chr5.1:5941098-5941117 None:intergenic 55.0%
!! TCCTTGGCAGAGGGCATTGT+GGG - chr5.1:5942024-5942043 None:intergenic 55.0%
CCAGATGGAGAACGGAAGCG+AGG + chr5.1:5941305-5941324 MS.gene09770:CDS 60.0%
CCCCCCCAATAAGCTGACGT+TGG - chr5.1:5939035-5939054 None:intergenic 60.0%
CCTCGCTTCCGTTCTCCATC+TGG - chr5.1:5941308-5941327 None:intergenic 60.0%
CTGACGTGGCACCCTAAGTG+AGG - chr5.1:5941036-5941055 None:intergenic 60.0%
GTAGTCTACAGCGGCTAGGC+GGG - chr5.1:5941531-5941550 None:intergenic 60.0%
TTGGGGGCCAAAACTGCCAC+AGG + chr5.1:5941079-5941098 MS.gene09770:intron 60.0%
! TGGGAGAGCGGTTAGCTGTG+TGG + chr5.1:5941835-5941854 MS.gene09770:intron 60.0%
!! CGGGAAGGCATCAGATGGAC+TGG + chr5.1:5942729-5942748 MS.gene09770:CDS 60.0%
!! CTCCTTGGCAGAGGGCATTG+TGG - chr5.1:5942025-5942044 None:intergenic 60.0%
!! TGACTCGGTCTACGCTGACG+TGG - chr5.1:5941050-5941069 None:intergenic 60.0%
!! TGTGGCAGTTTTGGCCCCCA+AGG - chr5.1:5941080-5941099 None:intergenic 60.0%
GCCCACAATGCCCTCTGCCA+AGG + chr5.1:5942020-5942039 MS.gene09770:intron 65.0%
GCGGCTAGGCGGGATGAGAA+TGG - chr5.1:5941521-5941540 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 5938474 5942910 5938474 ID=MS.gene09770
chr5.1 mRNA 5938474 5942910 5938474 ID=MS.gene09770.t1;Parent=MS.gene09770
chr5.1 exon 5938474 5938611 5938474 ID=MS.gene09770.t1.exon1;Parent=MS.gene09770.t1
chr5.1 CDS 5938474 5938611 5938474 ID=cds.MS.gene09770.t1;Parent=MS.gene09770.t1
chr5.1 exon 5938721 5938811 5938721 ID=MS.gene09770.t1.exon2;Parent=MS.gene09770.t1
chr5.1 CDS 5938721 5938811 5938721 ID=cds.MS.gene09770.t1;Parent=MS.gene09770.t1
chr5.1 exon 5939486 5939562 5939486 ID=MS.gene09770.t1.exon3;Parent=MS.gene09770.t1
chr5.1 CDS 5939486 5939562 5939486 ID=cds.MS.gene09770.t1;Parent=MS.gene09770.t1
chr5.1 exon 5939647 5939735 5939647 ID=MS.gene09770.t1.exon4;Parent=MS.gene09770.t1
chr5.1 CDS 5939647 5939735 5939647 ID=cds.MS.gene09770.t1;Parent=MS.gene09770.t1
chr5.1 exon 5939826 5940015 5939826 ID=MS.gene09770.t1.exon5;Parent=MS.gene09770.t1
chr5.1 CDS 5939826 5940015 5939826 ID=cds.MS.gene09770.t1;Parent=MS.gene09770.t1
chr5.1 exon 5940178 5940359 5940178 ID=MS.gene09770.t1.exon6;Parent=MS.gene09770.t1
chr5.1 CDS 5940178 5940359 5940178 ID=cds.MS.gene09770.t1;Parent=MS.gene09770.t1
chr5.1 exon 5940647 5940749 5940647 ID=MS.gene09770.t1.exon7;Parent=MS.gene09770.t1
chr5.1 CDS 5940647 5940749 5940647 ID=cds.MS.gene09770.t1;Parent=MS.gene09770.t1
chr5.1 exon 5941296 5941624 5941296 ID=MS.gene09770.t1.exon8;Parent=MS.gene09770.t1
chr5.1 CDS 5941296 5941624 5941296 ID=cds.MS.gene09770.t1;Parent=MS.gene09770.t1
chr5.1 exon 5942667 5942910 5942667 ID=MS.gene09770.t1.exon9;Parent=MS.gene09770.t1
chr5.1 CDS 5942667 5942910 5942667 ID=cds.MS.gene09770.t1;Parent=MS.gene09770.t1
Gene Sequence

>MS.gene09770

ATGACGATCTCGTGGTCTTTGGTTTGTGGTTTAATGCTTTTTGTTTTGGGTTTAATTTCGCTTCTTACTGGTCACATGCTTTCTGATCTTGAATGGTATTCTCATCGATTGGTTCACCCTACTTTTTACTCTAGATTGGTAATTAATTAATTTAATTCCTTCCTTATTAATCTTTCTATTTTTATTTTATTTTAATTTGTGTTTAATTTAATGCTAATTATAAAATAGTTATTTTGATTTCTTTTAGGATGGGCATTACCGTGCACCAATTGATATATGGAAATCTAAATTGTCTAAATATTATTATGGATGCAGTGACAGAGGCCGCGATTATGCTCGTAAGTTTCTTAATCAAATTTTTAATTAGTGAATTTTAATTATAATTCTGTGTATATTCATAGTTGGTTTGTTTTGCTTGATTGTATATTTAGTTTTTTGAATGCATTACATTGTACTCTTATATTCATATCTTAATGCTTTTTTGTTTTAGTCCTACAAGTTTTTTCTTTTTTGTTTGGATTCGGTCCTTGCAAATTCGAAAACTGTTGTTTTTAGTCTCCAACGTCAGCTTATTGGGGGGGCACGTATGACGTCAAAGACTAAAAACAACAACATCTGTATATGTAGGGACTAAACCCAGACAAAACAAACTTGCAGGGATTAAAACAAGAAAATGCTATAATTGCAGGGATTAAAATCATATTGAAACCTATTTCTATCACATTATTTGTAGAACTGCTAAATCTTCTGATTCTAAATATGTATGTATACTTGAGTATGAGCAAAACGAGTAGTGTCCTTGAAAGACTGCTGTATCGAGTGAAATGGGCATTGTACTCATATTGAATGTTTCATTTGTGGTGTGTTGTGTTAGTGGACTTGTGAATAGATTGAAGAGCTCCATTTTGTATTTTGGTTTGTTCATGAATAAATGATCTTCTTAAGAATGGGTTGAGTCATACACTAACTTTTCCATTTCTCACTTTCTTCTTTTCATAATCGGATAATATAGCTGCTGTGCGTGAGCAGATGTCGAATGGCTACTTGCTTATTGCAGCCAGTGGAGGATTGAATCAACAAAGAACTGGGGTAAGTAGGACATGATTTTGTGATATGCTATGTCATGAAATGAGACTTTTGATTATGACCGGACAATTATGATTCTTCATCCAGATAACAGATGCTGTAGTTGTTGCACGAATTCTTAATGCTACGCTGGTTGTACCTGAGTTGGATCATCATTCTTATTGGAAGGATGAGAGGTAATTGCAGATTCTTTCAAGCAGTCCATATAAGAATCAAGTTTAATGGTTCATTTAATGAGAACACTTTTGTTTGAAATTTGAATACAGTGACTTTATCAATATTTTCGATGTTGATTGGTTCATTTCTTATCTCGCAAAAGACGTCACTATTGTCAAAAGAGTTCCTGATAAGGTGATGAGATCAATGGAAAAACCCCCATATACAATGCGTGTCCCAAGGAAATCAGAACCCGATTATTATCTTGATCAAGTTTTGCCAATTCTTTTGAGACGACAGGTGTGGCCACTTGCTTGAAATTTTTATTTTAATGGATGTTTTGATTCACCAAATAACTGTCTTGATGAAACATAAGAACTTGGTTTTGGTCAATTGGCAGTGTTTTTGTGAATTTGGCTGTGGTAAGGTGATTGAGCAACTAACATTAAGGAGATGTTTCAGGTTGTACAATTGACGAAGTTTGACTTTAGACTTGCGAATCACCTTGATGACGAGCTACAAAAACTACGATGCCGTGTTAATTTCCATGCTTTGAGATTCACAAAACCTATTCAAGAACTTGGTCAAACAATTGTTACGAGAATGCAGAAGATGGCTCACCGTTTCATAGCAGTCCATTTGAGGTTTTTCTTTTCTGCACAACTTCCTTACAATGTTTTGAAATTGAATTAAAGTCATTTAATCATGTAAATAAATGTGAAATATTTGCGAGTATTTGTTTACTTATACTTTGGGTTTGTGGTGCTACTGAATGAGACCTCAAAATCAACTTTCTCGTGCAACTCAATAACAACACTACATTAATAACACATTTTCTTGTTTCATTCCAATGTTAGAAATAAGAGTTTGGGATGCGCAGGGGATCCTTTTTAATTGCAATTAACAATCTCTCATGATTCTTTTATTGCAGATTTGAACCAGATATGCTAGCCTTTTCAGGTTGTTATTTTGGTGGGGGAGAGAAAGAAAGAAATGAGCTTGGTGAAATCAGAAAAAGGTGGACAACATTACCAGTAAGACTACAATCCATTGACTTCTAATGATACAATCTTAACCATTCGACTAGCAAGAGTGTGGCATTTTGTCCTTTCTTAACAGTGCTGACTTTCTGAATGTCTAAACCTACACTGTTTCTTGAAACATAGCCTGATATGCATTCTAAGTAAAAATCAGGCTTAATAGCAGTTTTCGCCCCCTAAGAAGAAAAAAAAAACTACAAAACCGCCCCCTAAGTTTTTCAACTGTAGCAGTTTTGGCCCCCCAAGTCCAAAAAAATTTAAAAAATAACACGTGGCACCTCACTTAGGGTGCCACGTCAGCGTAGACCGAGTCAAAATTGGCCTTGGGGGCCAAAACTGCCACAGGTGCAAAACTTAGGGGGCGGTTTTGTAGTTTTTTTTCTTAGGGGGCCAAAATCGCAACTTTGTGAAAGTTAGGGGGCTAAAACTGCTATTAAGCCTAAAAATTATTTTGCTATGCAATACTTCTTAAATTTGAAGCTAATTATTTATCTTTATGTTGATATGAAATGATTGAGTTGTTGCCTTGTGATAAAATAGGATTTGAGTCCAGATGGAGAACGGAAGCGAGGGAAATGTCCTCTTACTCCTCATGAAGTGGGTTTGATGTTACGCGCACTTGGTTTTACAAATGACACATACCTCTATGTTGCATCGGGAGAAATATATGGAGGGGACGAGACTATGCAGCCTCTCAAAGATCTTTTCCCTAACATCTATACAAAGGAGATGCTTGCTGATGAAGAGCTGAAACCTTTTCTTCCATTCTCATCCCGCCTAGCCGCTGTAGACTACATTGTTTGTGATGAAAGCGATGTATTTGTTACTAACAACAATGGCAACATGGCCAAGATTTTAGCTGGTCGAAGGTAAGAATACAAAACTACTATGGTGTCCTCCTTTTGTTCGTTTATTACATAAATGGGCTTTCTTGTTTTTTTAAATATCATTTAAACGCAATCAACAAAGGATTGTCCACATCTAGTAATGGAATAGCTAGAATCATAGTGATGATTATTCTGTTAGGAAGCGTGGTTACTATGCTGTATTATTGACTTTTGATTTATATTAGAAATAGGTGGGAGAGCGGTTAGCTGTGTGGTTTCGCTTGAATTTAGAAAAACTTGTTTATGTTCTGTTTATTCGCTGGCATTCTTCTATTCAGAAAAGGAATAAATTATAAAATCTAAGTTGTCGAAAGAAACAGAGTATATGATACAAAATTGTGTTAAATTGTTAAATAAGTTTGTATATTTTAGCTTTCGCCCACAATGCCCTCTGCCAAGGAGTGATGACCATTCTCCAAATGTGGTTTAGACCATAGGCACCTTCACTTCATAAAAGTAGCAAAACCCTGTTCAGAAATAAAATTGGACATGGTTGTGGACAGTAGAATAGGTGGGAATTGGATAACATTCAATACAAATCTTGTATGATATAAAGGCAACTACTTTCCTAATATTCAAACTGTAGAGTTTAAGCTAGACCTAATTAACGTTGTAATCTAAAGTGAAAATTTGTTTTTCCAATAGTTAATAATTGAGGATATATAAATTTCCTTATTTACCATTCTTTTTCAACTTTGTCATTTACAATAAAGTGTTCTGAGTTGATTTGATTTTTCGTTGGCCAAAGCAAAAATTCCTATGAAAAGTATAACTTGTTACAGGGGGTTTCTGTAAAGCTTGTATATGGAATTTGGTTTGGCTCTTTTTTATAAACAATAAATTCCAAACTTGATGCAAAAGTATGTATATCATAGATTCAGGTTCTTTTAAGTTGTCATGCACATGTGCTTCTGTGGGTTATTGTAATTAGTATCAATCACTTTTACTGCCTACTTTTTTTACCTCAACCTTTGATTTTTGGTTAAAAAGCCTTCTTTTAAACACTTCTCTTTGTTTATAATAGGAGATATATGGGTCACAAAAGAACAATTAGACCAAATGCAAAGAAGCTTAGCACACTTTTTGCGGGAAGGCATCAGATGGACTGGCATACCTTCGCCAGAAAGGTTAAGGCATGCCAAAGAGGATTCATGGGAGAGCCAGATGAGATGAGACCTGGACGAGATGACCATCACGAATTTCCCAGCTCTTGTGTTTGTGAGAGACCATATGTCGATGAAAAACTCGGTACAAAGATTGATACCTGA
Protein sequence

>MS.gene09770.t1

MTISWSLVCGLMLFVLGLISLLTGHMLSDLEWYSHRLVHPTFYSRLDGHYRAPIDIWKSKLSKYYYGCSDRGRDYAPAVREQMSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDESDFINIFDVDWFISYLAKDVTIVKRVPDKVMRSMEKPPYTMRVPRKSEPDYYLDQVLPILLRRQVVQLTKFDFRLANHLDDELQKLRCRVNFHALRFTKPIQELGQTIVTRMQKMAHRFIAVHLRFEPDMLAFSGCYFGGGEKERNELGEIRKRWTTLPDLSPDGERKRGKCPLTPHEVGLMLRALGFTNDTYLYVASGEIYGGDETMQPLKDLFPNIYTKEMLADEELKPFLPFSSRLAAVDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKRTIRPNAKKLSTLFAGRHQMDWHTFARKVKACQRGFMGEPDEMRPGRDDHHEFPSSCVCERPYVDEKLGTKIDT