Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09794.t1 | XP_003625563.1 | 98.5 | 268 | 4 | 0 | 1 | 268 | 1 | 268 | 1.30E-147 | 532.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09794.t1 | Q9ZUU1 | 78.2 | 243 | 51 | 2 | 27 | 268 | 43 | 284 | 3.9e-105 | 382.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09794.t1 | G7L1P0 | 98.5 | 268 | 4 | 0 | 1 | 268 | 1 | 268 | 9.1e-148 | 532.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050169 | MS.gene09794 | 0.833016 | 6.79E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09794 | MS.gene033347 | PPI |
| MS.gene09794 | MS.gene057156 | PPI |
| MS.gene09794 | MS.gene011389 | PPI |
| MS.gene09794 | MS.gene065461 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09794.t1 | MTR_7g100530 | 98.507 | 268 | 4 | 0 | 1 | 268 | 1 | 268 | 0.0 | 541 |
| MS.gene09794.t1 | MTR_1g067050 | 74.476 | 286 | 55 | 4 | 1 | 268 | 1 | 286 | 5.31e-147 | 413 |
| MS.gene09794.t1 | MTR_2g461290 | 34.031 | 191 | 105 | 4 | 43 | 230 | 79 | 251 | 1.15e-26 | 108 |
| MS.gene09794.t1 | MTR_4g103800 | 29.902 | 204 | 121 | 4 | 38 | 234 | 31 | 219 | 3.60e-24 | 97.8 |
| MS.gene09794.t1 | MTR_4g035170 | 30.052 | 193 | 114 | 4 | 43 | 232 | 94 | 268 | 2.83e-20 | 88.6 |
| MS.gene09794.t1 | MTR_4g103800 | 31.429 | 140 | 89 | 2 | 38 | 172 | 31 | 168 | 1.57e-17 | 79.0 |
| MS.gene09794.t1 | MTR_8g009520 | 24.424 | 217 | 122 | 4 | 34 | 249 | 18 | 193 | 1.75e-15 | 73.6 |
| MS.gene09794.t1 | MTR_4g035850 | 23.214 | 224 | 127 | 3 | 31 | 252 | 49 | 229 | 1.93e-15 | 73.9 |
| MS.gene09794.t1 | MTR_4g035850 | 23.214 | 224 | 127 | 3 | 31 | 252 | 26 | 206 | 2.23e-15 | 73.6 |
| MS.gene09794.t1 | MTR_5g068940 | 22.541 | 244 | 144 | 3 | 11 | 252 | 6 | 206 | 2.39e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09794.t1 | AT2G37250 | 70.280 | 286 | 65 | 5 | 1 | 268 | 1 | 284 | 3.67e-138 | 390 |
| MS.gene09794.t1 | AT2G39270 | 71.713 | 251 | 70 | 1 | 18 | 268 | 46 | 295 | 5.81e-118 | 340 |
| MS.gene09794.t1 | AT3G01820 | 36.087 | 230 | 103 | 6 | 34 | 258 | 60 | 250 | 1.91e-37 | 133 |
| MS.gene09794.t1 | AT5G35170 | 33.796 | 216 | 121 | 5 | 18 | 230 | 62 | 258 | 1.42e-29 | 117 |
| MS.gene09794.t1 | AT5G35170 | 33.796 | 216 | 121 | 5 | 18 | 230 | 62 | 258 | 1.54e-29 | 117 |
| MS.gene09794.t1 | AT5G50370 | 31.707 | 205 | 122 | 4 | 38 | 237 | 36 | 227 | 3.14e-27 | 106 |
| MS.gene09794.t1 | AT5G63400 | 31.731 | 208 | 124 | 4 | 38 | 240 | 35 | 229 | 4.03e-27 | 105 |
| MS.gene09794.t1 | AT5G50370 | 32.474 | 194 | 113 | 4 | 38 | 226 | 36 | 216 | 1.38e-25 | 101 |
| MS.gene09794.t1 | AT5G47840 | 31.282 | 195 | 110 | 5 | 37 | 228 | 65 | 238 | 1.35e-21 | 91.7 |
| MS.gene09794.t1 | AT5G47840 | 30.457 | 197 | 116 | 4 | 37 | 230 | 65 | 243 | 1.58e-21 | 91.7 |
| MS.gene09794.t1 | AT5G63400 | 34.286 | 140 | 85 | 2 | 38 | 172 | 35 | 172 | 3.65e-21 | 88.6 |
| MS.gene09794.t1 | AT4G25280 | 24.167 | 240 | 137 | 3 | 29 | 266 | 46 | 242 | 2.23e-20 | 88.2 |
| MS.gene09794.t1 | AT4G25280 | 24.167 | 240 | 137 | 3 | 29 | 266 | 46 | 242 | 2.23e-20 | 88.2 |
| MS.gene09794.t1 | AT3G60180 | 26.540 | 211 | 110 | 4 | 28 | 236 | 13 | 180 | 4.61e-18 | 80.5 |
| MS.gene09794.t1 | AT3G60180 | 26.540 | 211 | 110 | 4 | 28 | 236 | 13 | 180 | 4.61e-18 | 80.5 |
| MS.gene09794.t1 | AT5G26667 | 25.888 | 197 | 101 | 3 | 42 | 236 | 20 | 173 | 4.60e-17 | 77.8 |
| MS.gene09794.t1 | AT5G26667 | 25.888 | 197 | 101 | 3 | 42 | 236 | 20 | 173 | 4.60e-17 | 77.8 |
| MS.gene09794.t1 | AT5G26667 | 25.888 | 197 | 101 | 3 | 42 | 236 | 20 | 173 | 4.60e-17 | 77.8 |
| MS.gene09794.t1 | AT5G26667 | 25.888 | 197 | 101 | 3 | 42 | 236 | 20 | 173 | 5.89e-17 | 77.8 |
Find 92 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTTCATCTGACACTAAT+TGG | 0.227977 | 7.2:-11646698 | None:intergenic |
| ATTCTCACCCTTGATGTTAA+TGG | 0.236959 | 7.2:-11647093 | None:intergenic |
| TTCCATGAATCAGGAAATAT+TGG | 0.279986 | 7.2:+11646953 | MS.gene09794:intron |
| TCCACGCGCTAAGGGATAAA+AGG | 0.310626 | 7.2:-11645524 | None:intergenic |
| CTAATGGAGTTTGAGCTTCC+TGG | 0.337802 | 7.2:+11647489 | MS.gene09794:CDS |
| GCGTTTAACAAGGCGGGTTA+TGG | 0.353215 | 7.2:-11645494 | None:intergenic |
| AACAACTTTGGCCAAGATTC+CGG | 0.353841 | 7.2:-11647519 | None:intergenic |
| GGACGAGCCAAAGGCGAATC+AGG | 0.363002 | 7.2:+11646753 | MS.gene09794:CDS |
| ACGCGCCACCGCGTGATAAC+AGG | 0.363520 | 7.2:+11645569 | MS.gene09794:CDS |
| TTGCAAGCAGTGCTTCTTCT+CGG | 0.365762 | 7.2:-11647016 | None:intergenic |
| ACAACTTTGGCCAAGATTCC+GGG | 0.378273 | 7.2:-11647518 | None:intergenic |
| AATGAAACCTGATTCGCCTT+TGG | 0.391502 | 7.2:-11646760 | None:intergenic |
| CGCCATGAGCTTTCCTCCAA+TGG | 0.396544 | 7.2:+11645700 | MS.gene09794:CDS |
| AGGGGAGCCATACTAATTCC+AGG | 0.402077 | 7.2:-11647122 | None:intergenic |
| GAATCAGGTTTCATTCTTGA+TGG | 0.402493 | 7.2:+11646768 | MS.gene09794:CDS |
| TTCTTAGGCTGTCCCGGCGT+TGG | 0.409479 | 7.2:+11645607 | MS.gene09794:CDS |
| TTCGCCTTTGGCTCGTCCTT+CGG | 0.413354 | 7.2:-11646748 | None:intergenic |
| AAATGGAACCTGGGAAGAAA+GGG | 0.413958 | 7.2:-11645725 | None:intergenic |
| CGAAGCCTTTCTTTGACTAC+TGG | 0.419226 | 7.2:-11647200 | None:intergenic |
| AAAATGGAACCTGGGAAGAA+AGG | 0.419929 | 7.2:-11645726 | None:intergenic |
| GCTTCGTATATACAATGAAT+TGG | 0.421380 | 7.2:+11647217 | MS.gene09794:CDS |
| CTGGAGGGATCCCGGAATCT+TGG | 0.426061 | 7.2:+11647508 | MS.gene09794:CDS |
| ATTAACATCAAGGGTGAGAA+TGG | 0.438121 | 7.2:+11647095 | MS.gene09794:CDS |
| ACTGCTTGCTTTATTGTTCG+AGG | 0.454143 | 7.2:-11646795 | None:intergenic |
| GTCCAAGCTCATCACTCGTT+CGG | 0.462893 | 7.2:+11647166 | MS.gene09794:CDS |
| TTAAGAGCATGCAACAACTT+TGG | 0.463437 | 7.2:-11647531 | None:intergenic |
| TACAATGCTCAGGAGGAAGC+AGG | 0.474529 | 7.2:-11647142 | None:intergenic |
| GGCTGTCCCGGCGTTGGTAA+AGG | 0.475495 | 7.2:+11645613 | MS.gene09794:CDS |
| CGGTGGCGCGTGAGAATATG+AGG | 0.478955 | 7.2:-11645557 | None:intergenic |
| CCGTAGCCGAGGAAAACTAA+TGG | 0.480423 | 7.2:+11647473 | MS.gene09794:CDS |
| AGCCGCCTCTGCAACCTCCT+CGG | 0.480794 | 7.2:+11645646 | MS.gene09794:CDS |
| GTTGCAGAGGCGGCTGGCGT+AGG | 0.481502 | 7.2:-11645638 | None:intergenic |
| TGTTGCCTCCATTAACATCA+AGG | 0.487139 | 7.2:+11647085 | MS.gene09794:CDS |
| GGAGGAGAATCCACGCGCTA+AGG | 0.487598 | 7.2:-11645533 | None:intergenic |
| CACCGAGGAGGTTGCAGAGG+CGG | 0.490243 | 7.2:-11645648 | None:intergenic |
| GAGCTTGTTGTCTAAGAGAC+TGG | 0.490979 | 7.2:+11646725 | MS.gene09794:CDS |
| CAAGATTCCGGGATCCCTCC+AGG | 0.501896 | 7.2:-11647507 | None:intergenic |
| TGAGCTTCCTGGAGGGATCC+CGG | 0.505662 | 7.2:+11647500 | MS.gene09794:CDS |
| TGGGTGCCCTGGAATTAGTA+TGG | 0.509227 | 7.2:+11647115 | MS.gene09794:CDS |
| CTGAACCAGTAGTCAAAGAA+AGG | 0.515149 | 7.2:+11647195 | MS.gene09794:CDS |
| GAGGAGGTTGCAGAGGCGGC+TGG | 0.516659 | 7.2:-11645644 | None:intergenic |
| AAGGGTGAGAATGGGTGCCC+TGG | 0.527488 | 7.2:+11647104 | MS.gene09794:CDS |
| CTGGCCGAAGGACGAGCCAA+AGG | 0.528270 | 7.2:+11646744 | MS.gene09794:CDS |
| TGTGGTGCGTTTAACAAGGC+GGG | 0.531626 | 7.2:-11645500 | None:intergenic |
| AGCTTGGACATACAATGCTC+AGG | 0.536250 | 7.2:-11647152 | None:intergenic |
| GGTGTTCCTCACATCGCTAC+CGG | 0.536592 | 7.2:+11645667 | MS.gene09794:CDS |
| GGCCATTGGAGGAAAGCTCA+TGG | 0.538613 | 7.2:-11645702 | None:intergenic |
| CGCGTGAGAATATGAGGAGG+AGG | 0.547324 | 7.2:-11645551 | None:intergenic |
| GGTGACAGACATTGACTTGG+TGG | 0.549406 | 7.2:+11646980 | MS.gene09794:CDS |
| CTCATGGCGAACAAGATCTC+CGG | 0.552425 | 7.2:-11645686 | None:intergenic |
| ACAATGCTCAGGAGGAAGCA+GGG | 0.553118 | 7.2:-11647141 | None:intergenic |
| ATGAATCAGGAAATATTGGA+AGG | 0.560014 | 7.2:+11646957 | MS.gene09794:intron |
| TTAACATCAAGGGTGAGAAT+GGG | 0.564208 | 7.2:+11647096 | MS.gene09794:CDS |
| CTACGGTAAAATCCCTCCAC+AGG | 0.569867 | 7.2:-11647456 | None:intergenic |
| GAATCAGGAAATATTGGAAG+GGG | 0.571838 | 7.2:+11646959 | MS.gene09794:intron |
| CGCTAAGGGATAAAAGGATG+TGG | 0.573069 | 7.2:-11645518 | None:intergenic |
| CTATCAGAAATCGTAAATCA+AGG | 0.576086 | 7.2:+11646675 | MS.gene09794:CDS |
| CTCACCCTTGATGTTAATGG+AGG | 0.585838 | 7.2:-11647090 | None:intergenic |
| ATTGTAGAGTCAACCTGTGG+AGG | 0.587568 | 7.2:+11647443 | MS.gene09794:intron |
| ATCCGAACGAGTGATGAGCT+TGG | 0.590005 | 7.2:-11647168 | None:intergenic |
| TGAATCAGGAAATATTGGAA+GGG | 0.590988 | 7.2:+11646958 | MS.gene09794:intron |
| TAGGTACCTTTACCAACGCC+GGG | 0.591127 | 7.2:-11645619 | None:intergenic |
| GACTGCAAGTTCTCCTACCG+AGG | 0.599285 | 7.2:-11647043 | None:intergenic |
| TTGTAGAGTCAACCTGTGGA+GGG | 0.600517 | 7.2:+11647444 | MS.gene09794:intron |
| GCACTGCTTGCAAAATGCCT+CGG | 0.600739 | 7.2:+11647026 | MS.gene09794:CDS |
| GTTGCCTCCATTAACATCAA+GGG | 0.606046 | 7.2:+11647086 | MS.gene09794:CDS |
| GAACACCGAGGAGGTTGCAG+AGG | 0.607957 | 7.2:-11645651 | None:intergenic |
| GAGGAGAATCCACGCGCTAA+GGG | 0.613124 | 7.2:-11645532 | None:intergenic |
| TGATAACAGGAATATTCAGT+GGG | 0.619397 | 7.2:+11645582 | MS.gene09794:CDS |
| GGGGAGCCATACTAATTCCA+GGG | 0.625204 | 7.2:-11647121 | None:intergenic |
| AGGATGTGGTGCGTTTAACA+AGG | 0.626478 | 7.2:-11645504 | None:intergenic |
| CAATGCTCAGGAGGAAGCAG+GGG | 0.629253 | 7.2:-11647140 | None:intergenic |
| GTGATAACAGGAATATTCAG+TGG | 0.631365 | 7.2:+11645581 | MS.gene09794:CDS |
| AATGGAACCTGGGAAGAAAG+GGG | 0.635071 | 7.2:-11645724 | None:intergenic |
| ATGGAGTTTGAGCTTCCTGG+AGG | 0.638339 | 7.2:+11647492 | MS.gene09794:CDS |
| GTAGGTACCTTTACCAACGC+CGG | 0.638576 | 7.2:-11645620 | None:intergenic |
| TGGAGTTTGAGCTTCCTGGA+GGG | 0.640406 | 7.2:+11647493 | MS.gene09794:CDS |
| TGCTTGCAAAATGCCTCGGT+AGG | 0.644240 | 7.2:+11647030 | MS.gene09794:CDS |
| AGAACTTGCAGTCAGTGTGG+AGG | 0.647767 | 7.2:+11647053 | MS.gene09794:CDS |
| TTGTCTAAGAGACTGGCCGA+AGG | 0.649173 | 7.2:+11646732 | MS.gene09794:CDS |
| ATGGAACCTGGGAAGAAAGG+GGG | 0.650436 | 7.2:-11645723 | None:intergenic |
| AGATCTCCGGTAGCGATGTG+AGG | 0.653463 | 7.2:-11645673 | None:intergenic |
| TTGGACATACAATGCTCAGG+AGG | 0.663374 | 7.2:-11647149 | None:intergenic |
| ATATTCCTGTTATCACGCGG+TGG | 0.668275 | 7.2:-11645574 | None:intergenic |
| AGGGGTGACAGACATTGACT+TGG | 0.668576 | 7.2:+11646977 | MS.gene09794:CDS |
| AGGAGAACTTGCAGTCAGTG+TGG | 0.669907 | 7.2:+11647050 | MS.gene09794:CDS |
| ATGTGGTGCGTTTAACAAGG+CGG | 0.679658 | 7.2:-11645501 | None:intergenic |
| ATGATTGTAGAGTCAACCTG+TGG | 0.682094 | 7.2:+11647440 | MS.gene09794:intron |
| TGAATATTCCTGTTATCACG+CGG | 0.715299 | 7.2:-11645577 | None:intergenic |
| CGATGTGAGGAACACCGAGG+AGG | 0.716688 | 7.2:-11645660 | None:intergenic |
| TGGCGCGTGAGAATATGAGG+AGG | 0.729208 | 7.2:-11645554 | None:intergenic |
| TAGCGATGTGAGGAACACCG+AGG | 0.819027 | 7.2:-11645663 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAGGAAAAATAAAA+TGG | - | chr7.2:11645745-11645764 | None:intergenic | 10.0% |
| !!! | AATAATATTAAAACTTTTAG+TGG | - | chr7.2:11646457-11646476 | None:intergenic | 10.0% |
| !!! | TTTTCATTTTGAATAAAAAA+AGG | - | chr7.2:11645758-11645777 | None:intergenic | 10.0% |
| !! | ATTAACAATCATATTGTTTA+AGG | - | chr7.2:11646332-11646351 | None:intergenic | 15.0% |
| !!! | GGACTTTTTATATTAATAAT+AGG | + | chr7.2:11646872-11646891 | MS.gene09794:intron | 15.0% |
| !! | ATAAAAAGTCCTTAAAAACT+AGG | - | chr7.2:11646863-11646882 | None:intergenic | 20.0% |
| !! | CCAAAGCATATAATAATAAA+AGG | - | chr7.2:11645793-11645812 | None:intergenic | 20.0% |
| !!! | CCTTTTATTATTATATGCTT+TGG | + | chr7.2:11645790-11645809 | MS.gene09794:intron | 20.0% |
| !!! | TTTTTGATAATACATAGCAA+TGG | + | chr7.2:11646490-11646509 | MS.gene09794:intron | 20.0% |
| ! | AAATGATGATTGACATTCTA+TGG | + | chr7.2:11646210-11646229 | MS.gene09794:intron | 25.0% |
| ! | CATGTAATAAGCTGTAATTA+TGG | + | chr7.2:11646076-11646095 | MS.gene09794:intron | 25.0% |
| ! | TAATTTCATCTGACACTAAT+TGG | - | chr7.2:11646701-11646720 | None:intergenic | 25.0% |
| ! | TTAACAATCAGAATTGTTGA+AGG | - | chr7.2:11646192-11646211 | None:intergenic | 25.0% |
| ! | TTTATGTGTCTTCAATACTT+TGG | + | chr7.2:11645993-11646012 | MS.gene09794:intron | 25.0% |
| !! | ATTATATGCTTTGGTTTAGT+TGG | + | chr7.2:11645799-11645818 | MS.gene09794:intron | 25.0% |
| !! | TGTATTATTTTCCATGAATC+AGG | + | chr7.2:11646944-11646963 | MS.gene09794:intron | 25.0% |
| !! | TTGTTATTGTTGTTGGTTAA+GGG | + | chr7.2:11647268-11647287 | MS.gene09794:intron | 25.0% |
| !!! | TGATATTGATAGCGTAAAAT+GGG | + | chr7.2:11645838-11645857 | MS.gene09794:intron | 25.0% |
| AACCTATGGCATCTTAATTA+TGG | + | chr7.2:11647297-11647316 | MS.gene09794:intron | 30.0% | |
| AATCTCTGATTCATGTTTCA+TGG | + | chr7.2:11646140-11646159 | MS.gene09794:intron | 30.0% | |
| ACCTATGGCATCTTAATTAT+GGG | + | chr7.2:11647298-11647317 | MS.gene09794:intron | 30.0% | |
| AGGAAAAATAAAATGGAACC+TGG | - | chr7.2:11645738-11645757 | None:intergenic | 30.0% | |
| ATGAATCAGGAAATATTGGA+AGG | + | chr7.2:11646957-11646976 | MS.gene09794:intron | 30.0% | |
| CTATCAGAAATCGTAAATCA+AGG | + | chr7.2:11646675-11646694 | MS.gene09794:CDS | 30.0% | |
| GCTTCGTATATACAATGAAT+TGG | + | chr7.2:11647217-11647236 | MS.gene09794:CDS | 30.0% | |
| GGAAAAATAAAATGGAACCT+GGG | - | chr7.2:11645737-11645756 | None:intergenic | 30.0% | |
| TGAATCAGGAAATATTGGAA+GGG | + | chr7.2:11646958-11646977 | MS.gene09794:intron | 30.0% | |
| TGATAACAGGAATATTCAGT+GGG | + | chr7.2:11645582-11645601 | MS.gene09794:CDS | 30.0% | |
| TTCCAATATTTCCTGATTCA+TGG | - | chr7.2:11646958-11646977 | None:intergenic | 30.0% | |
| TTCCATGAATCAGGAAATAT+TGG | + | chr7.2:11646953-11646972 | MS.gene09794:intron | 30.0% | |
| ! | ACTGTTGTTGTTATTGTTGT+TGG | + | chr7.2:11647261-11647280 | MS.gene09794:intron | 30.0% |
| ! | ATTGAAGATAGCATGGTTTT+TGG | + | chr7.2:11646569-11646588 | MS.gene09794:intron | 30.0% |
| ! | GTTGTTATTGTTGTTGGTTA+AGG | + | chr7.2:11647267-11647286 | MS.gene09794:intron | 30.0% |
| ! | TGTTATTGTTGTTGGTTAAG+GGG | + | chr7.2:11647269-11647288 | MS.gene09794:intron | 30.0% |
| ! | TTGGACTCATTTGTTAAATC+TGG | + | chr7.2:11646012-11646031 | MS.gene09794:intron | 30.0% |
| !! | AATATTCAGTGGGTTTTCTT+AGG | + | chr7.2:11645592-11645611 | MS.gene09794:CDS | 30.0% |
| !! | CTGATATTGATAGCGTAAAA+TGG | + | chr7.2:11645837-11645856 | MS.gene09794:intron | 30.0% |
| !!! | AAAATTTGTGCTTTTTCGAC+TGG | + | chr7.2:11645958-11645977 | MS.gene09794:intron | 30.0% |
| AAGTCCTTAAAAACTAGGAC+AGG | - | chr7.2:11646858-11646877 | None:intergenic | 35.0% | |
| ACAACAGTAACAGTAAGACA+AGG | - | chr7.2:11647249-11647268 | None:intergenic | 35.0% | |
| AGTCCTTAAAAACTAGGACA+GGG | - | chr7.2:11646857-11646876 | None:intergenic | 35.0% | |
| AGTGTGAATTGAAGATAGCA+TGG | + | chr7.2:11646562-11646581 | MS.gene09794:intron | 35.0% | |
| ATTAACATCAAGGGTGAGAA+TGG | + | chr7.2:11647095-11647114 | MS.gene09794:CDS | 35.0% | |
| ATTCTCACCCTTGATGTTAA+TGG | - | chr7.2:11647096-11647115 | None:intergenic | 35.0% | |
| CCTATGGCATCTTAATTATG+GGG | + | chr7.2:11647299-11647318 | MS.gene09794:intron | 35.0% | |
| CTATGGCATCTTAATTATGG+GGG | + | chr7.2:11647300-11647319 | MS.gene09794:intron | 35.0% | |
| GAATCAGGAAATATTGGAAG+GGG | + | chr7.2:11646959-11646978 | MS.gene09794:intron | 35.0% | |
| GAATCAGGTTTCATTCTTGA+TGG | + | chr7.2:11646768-11646787 | MS.gene09794:CDS | 35.0% | |
| GTGATAACAGGAATATTCAG+TGG | + | chr7.2:11645581-11645600 | MS.gene09794:CDS | 35.0% | |
| TCACACTCACACAAGAATTA+AGG | - | chr7.2:11646549-11646568 | None:intergenic | 35.0% | |
| TCTGGCTATGTAAGAAATCA+TGG | + | chr7.2:11646030-11646049 | MS.gene09794:intron | 35.0% | |
| TGAATATTCCTGTTATCACG+CGG | - | chr7.2:11645580-11645599 | None:intergenic | 35.0% | |
| TTAACATCAAGGGTGAGAAT+GGG | + | chr7.2:11647096-11647115 | MS.gene09794:CDS | 35.0% | |
| TTCATGTTTCATGGTTCAAC+TGG | + | chr7.2:11646149-11646168 | MS.gene09794:intron | 35.0% | |
| TTCCATCGAAAAATGACACA+AGG | + | chr7.2:11646916-11646935 | MS.gene09794:intron | 35.0% | |
| ! | TTAAGAGCATGCAACAACTT+TGG | - | chr7.2:11647534-11647553 | None:intergenic | 35.0% |
| !! | GCGTAAAATGGGTTATTCTA+TGG | + | chr7.2:11645849-11645868 | MS.gene09794:intron | 35.0% |
| !! | TTTTTCGACTGGCTATGTTT+TGG | + | chr7.2:11645969-11645988 | MS.gene09794:intron | 35.0% |
| !!! | CAAACTCCATTAGTTTTCCT+CGG | - | chr7.2:11647482-11647501 | None:intergenic | 35.0% |
| !!! | TTCCTTGTGTCATTTTTCGA+TGG | - | chr7.2:11646921-11646940 | None:intergenic | 35.0% |
| AAAATGGAACCTGGGAAGAA+AGG | - | chr7.2:11645729-11645748 | None:intergenic | 40.0% | |
| AAATGGAACCTGGGAAGAAA+GGG | - | chr7.2:11645728-11645747 | None:intergenic | 40.0% | |
| AACAACTTTGGCCAAGATTC+CGG | - | chr7.2:11647522-11647541 | None:intergenic | 40.0% | |
| ATGATTGTAGAGTCAACCTG+TGG | + | chr7.2:11647440-11647459 | MS.gene09794:intron | 40.0% | |
| CCATCAAAAAGCAGAATGCA+TGG | - | chr7.2:11646357-11646376 | None:intergenic | 40.0% | |
| CCCCATAATTAAGATGCCAT+AGG | - | chr7.2:11647302-11647321 | None:intergenic | 40.0% | |
| CTGAACCAGTAGTCAAAGAA+AGG | + | chr7.2:11647195-11647214 | MS.gene09794:CDS | 40.0% | |
| GTCCTTAAAAACTAGGACAG+GGG | - | chr7.2:11646856-11646875 | None:intergenic | 40.0% | |
| GTTGCCTCCATTAACATCAA+GGG | + | chr7.2:11647086-11647105 | MS.gene09794:CDS | 40.0% | |
| TGTTGCCTCCATTAACATCA+AGG | + | chr7.2:11647085-11647104 | MS.gene09794:CDS | 40.0% | |
| ! | AATGAAACCTGATTCGCCTT+TGG | - | chr7.2:11646763-11646782 | None:intergenic | 40.0% |
| ! | ACTGCTTGCTTTATTGTTCG+AGG | - | chr7.2:11646798-11646817 | None:intergenic | 40.0% |
| ! | CTTGTCACTTATCAGTGTGT+TGG | + | chr7.2:11646113-11646132 | MS.gene09794:intron | 40.0% |
| !! | TCATGGTTCAACTGGTTTGA+TGG | + | chr7.2:11646157-11646176 | MS.gene09794:intron | 40.0% |
| !!! | CCATGCATTCTGCTTTTTGA+TGG | + | chr7.2:11646354-11646373 | MS.gene09794:intron | 40.0% |
| !!! | CTTTTGTCACTTGTTGTCGT+TGG | + | chr7.2:11646238-11646257 | MS.gene09794:intron | 40.0% |
| AAAAACTAGGACAGGGGTGA+GGG | - | chr7.2:11646850-11646869 | None:intergenic | 45.0% | |
| AATGGAACCTGGGAAGAAAG+GGG | - | chr7.2:11645727-11645746 | None:intergenic | 45.0% | |
| ACAACTTTGGCCAAGATTCC+GGG | - | chr7.2:11647521-11647540 | None:intergenic | 45.0% | |
| AGCTTGGACATACAATGCTC+AGG | - | chr7.2:11647155-11647174 | None:intergenic | 45.0% | |
| AGGATGTGGTGCGTTTAACA+AGG | - | chr7.2:11645507-11645526 | None:intergenic | 45.0% | |
| ATATTCCTGTTATCACGCGG+TGG | - | chr7.2:11645577-11645596 | None:intergenic | 45.0% | |
| ATGTGGTGCGTTTAACAAGG+CGG | - | chr7.2:11645504-11645523 | None:intergenic | 45.0% | |
| ATTGACGCAAATCACGCAGA+TGG | - | chr7.2:11645921-11645940 | None:intergenic | 45.0% | |
| ATTGTAGAGTCAACCTGTGG+AGG | + | chr7.2:11647443-11647462 | MS.gene09794:intron | 45.0% | |
| CGAAGCCTTTCTTTGACTAC+TGG | - | chr7.2:11647203-11647222 | None:intergenic | 45.0% | |
| CGCTAAGGGATAAAAGGATG+TGG | - | chr7.2:11645521-11645540 | None:intergenic | 45.0% | |
| CTAATGGAGTTTGAGCTTCC+TGG | + | chr7.2:11647489-11647508 | MS.gene09794:CDS | 45.0% | |
| CTCACCCTTGATGTTAATGG+AGG | - | chr7.2:11647093-11647112 | None:intergenic | 45.0% | |
| TAAAAACTAGGACAGGGGTG+AGG | - | chr7.2:11646851-11646870 | None:intergenic | 45.0% | |
| TTGACGCAAATCACGCAGAT+GGG | - | chr7.2:11645920-11645939 | None:intergenic | 45.0% | |
| TTGCAAGCAGTGCTTCTTCT+CGG | - | chr7.2:11647019-11647038 | None:intergenic | 45.0% | |
| TTGGACATACAATGCTCAGG+AGG | - | chr7.2:11647152-11647171 | None:intergenic | 45.0% | |
| TTGTAGAGTCAACCTGTGGA+GGG | + | chr7.2:11647444-11647463 | MS.gene09794:intron | 45.0% | |
| !! | CACCCCTGTCCTAGTTTTTA+AGG | + | chr7.2:11646851-11646870 | MS.gene09794:intron | 45.0% |
| !! | GAGCTTGTTGTCTAAGAGAC+TGG | + | chr7.2:11646725-11646744 | MS.gene09794:CDS | 45.0% |
| !!! | CCATTAGTTTTCCTCGGCTA+CGG | - | chr7.2:11647476-11647495 | None:intergenic | 45.0% |
| !!! | TAATATTATTAATTTTTTTG+AGG | + | chr7.2:11646467-11646486 | MS.gene09794:intron | 5.0% |
| AAAACTAGGACAGGGGTGAG+GGG | - | chr7.2:11646849-11646868 | None:intergenic | 50.0% | |
| ACAATGCTCAGGAGGAAGCA+GGG | - | chr7.2:11647144-11647163 | None:intergenic | 50.0% | |
| AGAACTTGCAGTCAGTGTGG+AGG | + | chr7.2:11647053-11647072 | MS.gene09794:CDS | 50.0% | |
| AGGAGAACTTGCAGTCAGTG+TGG | + | chr7.2:11647050-11647069 | MS.gene09794:CDS | 50.0% | |
| AGGGGAGCCATACTAATTCC+AGG | - | chr7.2:11647125-11647144 | None:intergenic | 50.0% | |
| ATCCGAACGAGTGATGAGCT+TGG | - | chr7.2:11647171-11647190 | None:intergenic | 50.0% | |
| ATGGAACCTGGGAAGAAAGG+GGG | - | chr7.2:11645726-11645745 | None:intergenic | 50.0% | |
| ATGGAGTTTGAGCTTCCTGG+AGG | + | chr7.2:11647492-11647511 | MS.gene09794:CDS | 50.0% | |
| CCGTAGCCGAGGAAAACTAA+TGG | + | chr7.2:11647473-11647492 | MS.gene09794:CDS | 50.0% | |
| CTACGGTAAAATCCCTCCAC+AGG | - | chr7.2:11647459-11647478 | None:intergenic | 50.0% | |
| CTCATGGCGAACAAGATCTC+CGG | - | chr7.2:11645689-11645708 | None:intergenic | 50.0% | |
| GCACTGCTTGCAAAATGCCT+CGG | + | chr7.2:11647026-11647045 | MS.gene09794:CDS | 50.0% | |
| GGGGAGCCATACTAATTCCA+GGG | - | chr7.2:11647124-11647143 | None:intergenic | 50.0% | |
| GTAGGTACCTTTACCAACGC+CGG | - | chr7.2:11645623-11645642 | None:intergenic | 50.0% | |
| GTCCAAGCTCATCACTCGTT+CGG | + | chr7.2:11647166-11647185 | MS.gene09794:CDS | 50.0% | |
| GTTAAGGGGACGTGAACCTA+TGG | + | chr7.2:11647283-11647302 | MS.gene09794:intron | 50.0% | |
| TACAATGCTCAGGAGGAAGC+AGG | - | chr7.2:11647145-11647164 | None:intergenic | 50.0% | |
| TAGGTACCTTTACCAACGCC+GGG | - | chr7.2:11645622-11645641 | None:intergenic | 50.0% | |
| TCCACGCGCTAAGGGATAAA+AGG | - | chr7.2:11645527-11645546 | None:intergenic | 50.0% | |
| TGCTTGCAAAATGCCTCGGT+AGG | + | chr7.2:11647030-11647049 | MS.gene09794:CDS | 50.0% | |
| TGGAGTTTGAGCTTCCTGGA+GGG | + | chr7.2:11647493-11647512 | MS.gene09794:CDS | 50.0% | |
| TGGGTGCCCTGGAATTAGTA+TGG | + | chr7.2:11647115-11647134 | MS.gene09794:CDS | 50.0% | |
| TGTGGTGCGTTTAACAAGGC+GGG | - | chr7.2:11645503-11645522 | None:intergenic | 50.0% | |
| ! | AGGGGTGACAGACATTGACT+TGG | + | chr7.2:11646977-11646996 | MS.gene09794:CDS | 50.0% |
| ! | TCCTTTTATCCCTTAGCGCG+TGG | + | chr7.2:11645523-11645542 | MS.gene09794:CDS | 50.0% |
| ! | TGGGTTTTCTTAGGCTGTCC+CGG | + | chr7.2:11645601-11645620 | MS.gene09794:CDS | 50.0% |
| ! | TTGTCTAAGAGACTGGCCGA+AGG | + | chr7.2:11646732-11646751 | MS.gene09794:CDS | 50.0% |
| !! | GCGTTTAACAAGGCGGGTTA+TGG | - | chr7.2:11645497-11645516 | None:intergenic | 50.0% |
| !! | GGTGACAGACATTGACTTGG+TGG | + | chr7.2:11646980-11646999 | MS.gene09794:CDS | 50.0% |
| AGATCTCCGGTAGCGATGTG+AGG | - | chr7.2:11645676-11645695 | None:intergenic | 55.0% | |
| CAATGCTCAGGAGGAAGCAG+GGG | - | chr7.2:11647143-11647162 | None:intergenic | 55.0% | |
| CGCCATGAGCTTTCCTCCAA+TGG | + | chr7.2:11645700-11645719 | MS.gene09794:CDS | 55.0% | |
| CGCGTGAGAATATGAGGAGG+AGG | - | chr7.2:11645554-11645573 | None:intergenic | 55.0% | |
| GACTGCAAGTTCTCCTACCG+AGG | - | chr7.2:11647046-11647065 | None:intergenic | 55.0% | |
| GAGGAGAATCCACGCGCTAA+GGG | - | chr7.2:11645535-11645554 | None:intergenic | 55.0% | |
| GGCCATTGGAGGAAAGCTCA+TGG | - | chr7.2:11645705-11645724 | None:intergenic | 55.0% | |
| GGTGTTCCTCACATCGCTAC+CGG | + | chr7.2:11645667-11645686 | MS.gene09794:CDS | 55.0% | |
| TAGCGATGTGAGGAACACCG+AGG | - | chr7.2:11645666-11645685 | None:intergenic | 55.0% | |
| TGGCGCGTGAGAATATGAGG+AGG | - | chr7.2:11645557-11645576 | None:intergenic | 55.0% | |
| ! | GAGGGATTTTACCGTAGCCG+AGG | + | chr7.2:11647462-11647481 | MS.gene09794:CDS | 55.0% |
| ! | TTCGCCTTTGGCTCGTCCTT+CGG | - | chr7.2:11646751-11646770 | None:intergenic | 55.0% |
| AAGGGTGAGAATGGGTGCCC+TGG | + | chr7.2:11647104-11647123 | MS.gene09794:CDS | 60.0% | |
| CAAGATTCCGGGATCCCTCC+AGG | - | chr7.2:11647510-11647529 | None:intergenic | 60.0% | |
| CAATGGCCCCCTTTCTTCCC+AGG | + | chr7.2:11645717-11645736 | MS.gene09794:CDS | 60.0% | |
| CGATGTGAGGAACACCGAGG+AGG | - | chr7.2:11645663-11645682 | None:intergenic | 60.0% | |
| CGGTGGCGCGTGAGAATATG+AGG | - | chr7.2:11645560-11645579 | None:intergenic | 60.0% | |
| CTGGAGGGATCCCGGAATCT+TGG | + | chr7.2:11647508-11647527 | MS.gene09794:CDS | 60.0% | |
| CTGGGAAGAAAGGGGGCCAT+TGG | - | chr7.2:11645719-11645738 | None:intergenic | 60.0% | |
| GAACACCGAGGAGGTTGCAG+AGG | - | chr7.2:11645654-11645673 | None:intergenic | 60.0% | |
| GGAAGAAAGGGGGCCATTGG+AGG | - | chr7.2:11645716-11645735 | None:intergenic | 60.0% | |
| GGACGAGCCAAAGGCGAATC+AGG | + | chr7.2:11646753-11646772 | MS.gene09794:CDS | 60.0% | |
| GGAGGAGAATCCACGCGCTA+AGG | - | chr7.2:11645536-11645555 | None:intergenic | 60.0% | |
| TGAGCTTCCTGGAGGGATCC+CGG | + | chr7.2:11647500-11647519 | MS.gene09794:CDS | 60.0% | |
| TTCTTAGGCTGTCCCGGCGT+TGG | + | chr7.2:11645607-11645626 | MS.gene09794:CDS | 60.0% | |
| ACGCGCCACCGCGTGATAAC+AGG | + | chr7.2:11645569-11645588 | MS.gene09794:CDS | 65.0% | |
| AGCCGCCTCTGCAACCTCCT+CGG | + | chr7.2:11645646-11645665 | MS.gene09794:CDS | 65.0% | |
| CACCGAGGAGGTTGCAGAGG+CGG | - | chr7.2:11645651-11645670 | None:intergenic | 65.0% | |
| CTGGCCGAAGGACGAGCCAA+AGG | + | chr7.2:11646744-11646763 | MS.gene09794:CDS | 65.0% | |
| !! | GGCTGTCCCGGCGTTGGTAA+AGG | + | chr7.2:11645613-11645632 | MS.gene09794:CDS | 65.0% |
| GAGGAGGTTGCAGAGGCGGC+TGG | - | chr7.2:11645647-11645666 | None:intergenic | 70.0% | |
| GTTGCAGAGGCGGCTGGCGT+AGG | - | chr7.2:11645641-11645660 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 11645487 | 11647590 | 11645487 | ID=MS.gene09794 |
| chr7.2 | mRNA | 11645487 | 11647590 | 11645487 | ID=MS.gene09794.t1;Parent=MS.gene09794 |
| chr7.2 | exon | 11645487 | 11645738 | 11645487 | ID=MS.gene09794.t1.exon1;Parent=MS.gene09794.t1 |
| chr7.2 | CDS | 11645487 | 11645738 | 11645487 | ID=cds.MS.gene09794.t1;Parent=MS.gene09794.t1 |
| chr7.2 | exon | 11646675 | 11646815 | 11646675 | ID=MS.gene09794.t1.exon2;Parent=MS.gene09794.t1 |
| chr7.2 | CDS | 11646675 | 11646815 | 11646675 | ID=cds.MS.gene09794.t1;Parent=MS.gene09794.t1 |
| chr7.2 | exon | 11646966 | 11647238 | 11646966 | ID=MS.gene09794.t1.exon3;Parent=MS.gene09794.t1 |
| chr7.2 | CDS | 11646966 | 11647238 | 11646966 | ID=cds.MS.gene09794.t1;Parent=MS.gene09794.t1 |
| chr7.2 | exon | 11647450 | 11647590 | 11647450 | ID=MS.gene09794.t1.exon4;Parent=MS.gene09794.t1 |
| chr7.2 | CDS | 11647450 | 11647590 | 11647450 | ID=cds.MS.gene09794.t1;Parent=MS.gene09794.t1 |
| Gene Sequence |
| Protein sequence |
