Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050169.t1 | XP_003625563.1 | 98.1 | 268 | 5 | 0 | 1 | 268 | 1 | 268 | 9.10E-146 | 526.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050169.t1 | Q9ZUU1 | 77.8 | 243 | 52 | 2 | 27 | 268 | 43 | 284 | 4.3e-104 | 379.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050169.t1 | G7L1P0 | 98.1 | 268 | 5 | 0 | 1 | 268 | 1 | 268 | 6.5e-146 | 526.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050169 | MS.gene052361 | 0.842017 | 3.34E-58 | -1.69E-46 |
| MS.gene050169 | MS.gene071579 | 0.827046 | 1.94E-54 | -1.69E-46 |
| MS.gene050169 | MS.gene072397 | 0.807191 | 5.70E-50 | -1.69E-46 |
| MS.gene050169 | MS.gene08594 | -0.804822 | 1.80E-49 | -1.69E-46 |
| MS.gene050169 | MS.gene09794 | 0.833016 | 6.79E-56 | -1.69E-46 |
| MS.gene050169 | MS.gene09796 | 0.836753 | 7.78E-57 | -1.69E-46 |
| MS.gene050169 | MS.gene22476 | 0.923782 | 1.69E-89 | -1.69E-46 |
| MS.gene050169 | MS.gene37722 | 0.826303 | 2.92E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050169 | MS.gene065461 | PPI |
| MS.gene050169 | MS.gene033347 | PPI |
| MS.gene050169 | MS.gene011389 | PPI |
| MS.gene050169 | MS.gene057156 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050169.t1 | MTR_7g100530 | 98.134 | 268 | 5 | 0 | 1 | 268 | 1 | 268 | 0.0 | 537 |
| MS.gene050169.t1 | MTR_1g067050 | 74.476 | 286 | 55 | 4 | 1 | 268 | 1 | 286 | 2.44e-147 | 414 |
| MS.gene050169.t1 | MTR_2g461290 | 31.532 | 222 | 122 | 5 | 21 | 230 | 48 | 251 | 5.29e-27 | 109 |
| MS.gene050169.t1 | MTR_4g103800 | 29.778 | 225 | 128 | 6 | 17 | 234 | 18 | 219 | 1.57e-24 | 98.6 |
| MS.gene050169.t1 | MTR_4g035170 | 30.208 | 192 | 113 | 4 | 43 | 231 | 94 | 267 | 1.06e-20 | 89.7 |
| MS.gene050169.t1 | MTR_4g103800 | 31.875 | 160 | 94 | 4 | 17 | 171 | 18 | 167 | 7.37e-18 | 79.7 |
| MS.gene050169.t1 | MTR_5g068940 | 23.361 | 244 | 142 | 3 | 11 | 252 | 6 | 206 | 6.07e-16 | 75.1 |
| MS.gene050169.t1 | MTR_8g009520 | 24.424 | 217 | 122 | 4 | 34 | 249 | 18 | 193 | 7.33e-16 | 74.7 |
| MS.gene050169.t1 | MTR_4g035850 | 24.107 | 224 | 125 | 3 | 31 | 252 | 49 | 229 | 7.47e-16 | 75.1 |
| MS.gene050169.t1 | MTR_4g035850 | 23.361 | 244 | 142 | 3 | 11 | 252 | 6 | 206 | 8.73e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050169.t1 | AT2G37250 | 69.930 | 286 | 66 | 5 | 1 | 268 | 1 | 284 | 1.59e-137 | 389 |
| MS.gene050169.t1 | AT2G39270 | 71.315 | 251 | 71 | 1 | 18 | 268 | 46 | 295 | 3.38e-117 | 338 |
| MS.gene050169.t1 | AT3G01820 | 35.652 | 230 | 104 | 6 | 34 | 258 | 60 | 250 | 3.59e-36 | 130 |
| MS.gene050169.t1 | AT5G35170 | 34.259 | 216 | 120 | 5 | 18 | 230 | 62 | 258 | 1.22e-30 | 120 |
| MS.gene050169.t1 | AT5G35170 | 34.259 | 216 | 120 | 5 | 18 | 230 | 62 | 258 | 1.30e-30 | 120 |
| MS.gene050169.t1 | AT5G63400 | 31.731 | 208 | 124 | 4 | 38 | 240 | 35 | 229 | 1.86e-27 | 106 |
| MS.gene050169.t1 | AT5G50370 | 31.220 | 205 | 123 | 4 | 38 | 237 | 36 | 227 | 5.41e-27 | 105 |
| MS.gene050169.t1 | AT5G50370 | 31.959 | 194 | 114 | 4 | 38 | 226 | 36 | 216 | 2.63e-25 | 100 |
| MS.gene050169.t1 | AT5G47840 | 31.282 | 195 | 110 | 5 | 37 | 228 | 65 | 238 | 4.85e-22 | 92.8 |
| MS.gene050169.t1 | AT5G47840 | 30.457 | 197 | 116 | 4 | 37 | 230 | 65 | 243 | 7.29e-22 | 92.4 |
| MS.gene050169.t1 | AT5G63400 | 34.286 | 140 | 85 | 2 | 38 | 172 | 35 | 172 | 1.69e-21 | 89.4 |
| MS.gene050169.t1 | AT4G25280 | 24.167 | 240 | 137 | 3 | 29 | 266 | 46 | 242 | 7.25e-21 | 89.4 |
| MS.gene050169.t1 | AT4G25280 | 24.167 | 240 | 137 | 3 | 29 | 266 | 46 | 242 | 7.25e-21 | 89.4 |
| MS.gene050169.t1 | AT3G60180 | 26.047 | 215 | 114 | 4 | 24 | 236 | 9 | 180 | 1.01e-18 | 82.4 |
| MS.gene050169.t1 | AT3G60180 | 26.047 | 215 | 114 | 4 | 24 | 236 | 9 | 180 | 1.01e-18 | 82.4 |
| MS.gene050169.t1 | AT5G26667 | 25.888 | 197 | 101 | 3 | 42 | 236 | 20 | 173 | 1.42e-17 | 79.3 |
| MS.gene050169.t1 | AT5G26667 | 25.888 | 197 | 101 | 3 | 42 | 236 | 20 | 173 | 1.42e-17 | 79.3 |
| MS.gene050169.t1 | AT5G26667 | 25.888 | 197 | 101 | 3 | 42 | 236 | 20 | 173 | 1.42e-17 | 79.3 |
| MS.gene050169.t1 | AT5G26667 | 25.888 | 197 | 101 | 3 | 42 | 236 | 20 | 173 | 1.79e-17 | 79.0 |
Find 91 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTTCATCTGACACTAAT+TGG | 0.227977 | 7.2:-11671987 | None:intergenic |
| ATTCTCACCCTTGATGTTAA+TGG | 0.236959 | 7.2:-11672382 | None:intergenic |
| TTCCATGAATCAGGAAATAT+TGG | 0.279986 | 7.2:+11672242 | MS.gene050169:intron |
| TCCACGCGCTAAGGGATAAA+AGG | 0.310626 | 7.2:-11670811 | None:intergenic |
| CTAATGGAGTTTGAGCTTCC+TGG | 0.337802 | 7.2:+11672778 | MS.gene050169:CDS |
| GCGTTTAACAAGGCGGGTTA+TGG | 0.353215 | 7.2:-11670781 | None:intergenic |
| AACAACTTTGGCCAAGATTC+CGG | 0.353841 | 7.2:-11672808 | None:intergenic |
| ACGCGCCACCGCGTGATAAC+AGG | 0.363520 | 7.2:+11670856 | MS.gene050169:CDS |
| GGACAAGCCAAAGGCGAATC+AGG | 0.365095 | 7.2:+11672042 | MS.gene050169:CDS |
| TTGCAAGCAGTGCTTCTTCT+CGG | 0.365762 | 7.2:-11672305 | None:intergenic |
| ACAACTTTGGCCAAGATTCC+GGG | 0.378273 | 7.2:-11672807 | None:intergenic |
| AATGAAACCTGATTCGCCTT+TGG | 0.382130 | 7.2:-11672049 | None:intergenic |
| CGCCATGAGCTTTCCTCCAA+TGG | 0.396544 | 7.2:+11670987 | MS.gene050169:CDS |
| AGGGGAGCCATACTAATTCC+AGG | 0.402077 | 7.2:-11672411 | None:intergenic |
| GAATCAGGTTTCATTCTTGA+TGG | 0.402493 | 7.2:+11672057 | MS.gene050169:CDS |
| TTCTTAGGCTGTCCCGGCGT+TGG | 0.409479 | 7.2:+11670894 | MS.gene050169:CDS |
| AAATGGAACCTGGGAAGAAA+GGG | 0.413958 | 7.2:-11671012 | None:intergenic |
| CGAAGCCTTTCTTTGACTAC+TGG | 0.419226 | 7.2:-11672489 | None:intergenic |
| AAAATGGAACCTGGGAAGAA+AGG | 0.419929 | 7.2:-11671013 | None:intergenic |
| TTCGCCTTTGGCTTGTCCTT+CGG | 0.420172 | 7.2:-11672037 | None:intergenic |
| GCTTCGTATATACAATGAAT+TGG | 0.421380 | 7.2:+11672506 | MS.gene050169:CDS |
| CTGGAGGGATCCCGGAATCT+TGG | 0.426061 | 7.2:+11672797 | MS.gene050169:CDS |
| ATTAACATCAAGGGTGAGAA+TGG | 0.438121 | 7.2:+11672384 | MS.gene050169:CDS |
| ACTGCTTGCTTTATTGTTCG+AGG | 0.454143 | 7.2:-11672084 | None:intergenic |
| GTCCAAGCTCATCACTCGTT+CGG | 0.462893 | 7.2:+11672455 | MS.gene050169:CDS |
| CGGTGGCGCGTGAGAATTTG+AGG | 0.462993 | 7.2:-11670844 | None:intergenic |
| TTAAGAGCATGCAACAACTT+TGG | 0.463437 | 7.2:-11672820 | None:intergenic |
| TACAATGCTCAGGAGGAAGC+AGG | 0.474529 | 7.2:-11672431 | None:intergenic |
| GGCTGTCCCGGCGTTGGTAA+AGG | 0.475495 | 7.2:+11670900 | MS.gene050169:CDS |
| CCGTAGCCGAGGAAAACTAA+TGG | 0.480423 | 7.2:+11672762 | MS.gene050169:CDS |
| AGCCGCCTCTGCAACCTCCT+CGG | 0.480794 | 7.2:+11670933 | MS.gene050169:CDS |
| GTTGCAGAGGCGGCTGGCGT+AGG | 0.481502 | 7.2:-11670925 | None:intergenic |
| TGTTGCCTCCATTAACATCA+AGG | 0.487139 | 7.2:+11672374 | MS.gene050169:CDS |
| GGAGGAGAATCCACGCGCTA+AGG | 0.487598 | 7.2:-11670820 | None:intergenic |
| CACCGAGGAGGTTGCAGAGG+CGG | 0.490243 | 7.2:-11670935 | None:intergenic |
| GAGCTTGTTGTCTAAGAGAC+TGG | 0.490979 | 7.2:+11672014 | MS.gene050169:CDS |
| CAAGATTCCGGGATCCCTCC+AGG | 0.501896 | 7.2:-11672796 | None:intergenic |
| TGAGCTTCCTGGAGGGATCC+CGG | 0.505662 | 7.2:+11672789 | MS.gene050169:CDS |
| CGCGTGAGAATTTGAGGAGG+AGG | 0.506477 | 7.2:-11670838 | None:intergenic |
| TGGGTGCCCTGGAATTAGTA+TGG | 0.509227 | 7.2:+11672404 | MS.gene050169:CDS |
| CTGAACCAGTAGTCAAAGAA+AGG | 0.515149 | 7.2:+11672484 | MS.gene050169:CDS |
| GAGGAGGTTGCAGAGGCGGC+TGG | 0.516659 | 7.2:-11670931 | None:intergenic |
| AAGGGTGAGAATGGGTGCCC+TGG | 0.527488 | 7.2:+11672393 | MS.gene050169:CDS |
| TGTGGTGCGTTTAACAAGGC+GGG | 0.531626 | 7.2:-11670787 | None:intergenic |
| AGCTTGGACATACAATGCTC+AGG | 0.536250 | 7.2:-11672441 | None:intergenic |
| GGTGTTTCTCACATCGCTAC+CGG | 0.536592 | 7.2:+11670954 | MS.gene050169:CDS |
| GGCCATTGGAGGAAAGCTCA+TGG | 0.538613 | 7.2:-11670989 | None:intergenic |
| GGTGACAGACATTGACTTGG+TGG | 0.549406 | 7.2:+11672269 | MS.gene050169:CDS |
| CTCATGGCGAACAAGATCTC+CGG | 0.552425 | 7.2:-11670973 | None:intergenic |
| ACAATGCTCAGGAGGAAGCA+GGG | 0.553118 | 7.2:-11672430 | None:intergenic |
| ATGAATCAGGAAATATTGGA+AGG | 0.560014 | 7.2:+11672246 | MS.gene050169:intron |
| TTAACATCAAGGGTGAGAAT+GGG | 0.564208 | 7.2:+11672385 | MS.gene050169:CDS |
| CTACGGTAAAATCCCTCCAC+AGG | 0.569867 | 7.2:-11672745 | None:intergenic |
| GAATCAGGAAATATTGGAAG+GGG | 0.571838 | 7.2:+11672248 | MS.gene050169:intron |
| CGCTAAGGGATAAAAGGATG+TGG | 0.573069 | 7.2:-11670805 | None:intergenic |
| CTATCAGAAATCGTAAATCA+AGG | 0.576086 | 7.2:+11671964 | MS.gene050169:CDS |
| CTCACCCTTGATGTTAATGG+AGG | 0.585838 | 7.2:-11672379 | None:intergenic |
| ATTGTAGAGTCAACCTGTGG+AGG | 0.587568 | 7.2:+11672732 | MS.gene050169:intron |
| ATCCGAACGAGTGATGAGCT+TGG | 0.590005 | 7.2:-11672457 | None:intergenic |
| TGAATCAGGAAATATTGGAA+GGG | 0.590988 | 7.2:+11672247 | MS.gene050169:intron |
| TAGGTACCTTTACCAACGCC+GGG | 0.591127 | 7.2:-11670906 | None:intergenic |
| CTGGCCGAAGGACAAGCCAA+AGG | 0.598805 | 7.2:+11672033 | MS.gene050169:CDS |
| GACTGCAAGTTCTCCTACCG+AGG | 0.599285 | 7.2:-11672332 | None:intergenic |
| TTGTAGAGTCAACCTGTGGA+GGG | 0.600517 | 7.2:+11672733 | MS.gene050169:intron |
| GCACTGCTTGCAAAATGCCT+CGG | 0.600739 | 7.2:+11672315 | MS.gene050169:CDS |
| GTTGCCTCCATTAACATCAA+GGG | 0.606046 | 7.2:+11672375 | MS.gene050169:CDS |
| GAGGAGAATCCACGCGCTAA+GGG | 0.613124 | 7.2:-11670819 | None:intergenic |
| TGATAACAGGAATATTCAGT+GGG | 0.619397 | 7.2:+11670869 | MS.gene050169:CDS |
| GGGGAGCCATACTAATTCCA+GGG | 0.625204 | 7.2:-11672410 | None:intergenic |
| AGGATGTGGTGCGTTTAACA+AGG | 0.626478 | 7.2:-11670791 | None:intergenic |
| AAACACCGAGGAGGTTGCAG+AGG | 0.628777 | 7.2:-11670938 | None:intergenic |
| CAATGCTCAGGAGGAAGCAG+GGG | 0.629253 | 7.2:-11672429 | None:intergenic |
| GTGATAACAGGAATATTCAG+TGG | 0.631365 | 7.2:+11670868 | MS.gene050169:CDS |
| AATGGAACCTGGGAAGAAAG+GGG | 0.635071 | 7.2:-11671011 | None:intergenic |
| ATGGAGTTTGAGCTTCCTGG+AGG | 0.638339 | 7.2:+11672781 | MS.gene050169:CDS |
| GTAGGTACCTTTACCAACGC+CGG | 0.638576 | 7.2:-11670907 | None:intergenic |
| TGGAGTTTGAGCTTCCTGGA+GGG | 0.640406 | 7.2:+11672782 | MS.gene050169:CDS |
| TGCTTGCAAAATGCCTCGGT+AGG | 0.644240 | 7.2:+11672319 | MS.gene050169:CDS |
| AGAACTTGCAGTCAGTGTGG+AGG | 0.647767 | 7.2:+11672342 | MS.gene050169:CDS |
| TTGTCTAAGAGACTGGCCGA+AGG | 0.649173 | 7.2:+11672021 | MS.gene050169:CDS |
| ATGGAACCTGGGAAGAAAGG+GGG | 0.650436 | 7.2:-11671010 | None:intergenic |
| TTGGACATACAATGCTCAGG+AGG | 0.663374 | 7.2:-11672438 | None:intergenic |
| ATATTCCTGTTATCACGCGG+TGG | 0.668275 | 7.2:-11670861 | None:intergenic |
| AGGGGTGACAGACATTGACT+TGG | 0.668576 | 7.2:+11672266 | MS.gene050169:CDS |
| AGGAGAACTTGCAGTCAGTG+TGG | 0.669907 | 7.2:+11672339 | MS.gene050169:CDS |
| ATGTGGTGCGTTTAACAAGG+CGG | 0.679658 | 7.2:-11670788 | None:intergenic |
| ATGATTGTAGAGTCAACCTG+TGG | 0.682094 | 7.2:+11672729 | MS.gene050169:intron |
| CGATGTGAGAAACACCGAGG+AGG | 0.714042 | 7.2:-11670947 | None:intergenic |
| TGGCGCGTGAGAATTTGAGG+AGG | 0.714123 | 7.2:-11670841 | None:intergenic |
| TGAATATTCCTGTTATCACG+CGG | 0.715299 | 7.2:-11670864 | None:intergenic |
| TAGCGATGTGAGAAACACCG+AGG | 0.794111 | 7.2:-11670950 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAGGAAAAATAAAA+TGG | - | chr7.2:11671032-11671051 | None:intergenic | 10.0% |
| !!! | AATAATATTAAAACTTTTAG+TGG | - | chr7.2:11671746-11671765 | None:intergenic | 10.0% |
| !!! | TTTTCATTTTGAATAAAAAA+AGG | - | chr7.2:11671045-11671064 | None:intergenic | 10.0% |
| !! | ATTAACAATCATATTGTTTA+AGG | - | chr7.2:11671621-11671640 | None:intergenic | 15.0% |
| !!! | GGACTTTTTATATTAATAAT+AGG | + | chr7.2:11672161-11672180 | MS.gene050169:intron | 15.0% |
| !! | ATAAAAAGTCCTTAAAAACT+AGG | - | chr7.2:11672152-11672171 | None:intergenic | 20.0% |
| !! | CCAAAGCATATAATAATAAA+AGG | - | chr7.2:11671082-11671101 | None:intergenic | 20.0% |
| !!! | CCTTTTATTATTATATGCTT+TGG | + | chr7.2:11671079-11671098 | MS.gene050169:intron | 20.0% |
| !!! | TTTTTGATAATACATAGCAA+TGG | + | chr7.2:11671779-11671798 | MS.gene050169:intron | 20.0% |
| ! | AAATGATGATTGACATTCTA+TGG | + | chr7.2:11671499-11671518 | MS.gene050169:intron | 25.0% |
| ! | CATGTAATAAGCTGTAATTA+TGG | + | chr7.2:11671365-11671384 | MS.gene050169:intron | 25.0% |
| ! | TAATTTCATCTGACACTAAT+TGG | - | chr7.2:11671990-11672009 | None:intergenic | 25.0% |
| ! | TTAACAATCAGAATTGTTGA+AGG | - | chr7.2:11671481-11671500 | None:intergenic | 25.0% |
| ! | TTTATGTGTCTTCAATACTT+TGG | + | chr7.2:11671282-11671301 | MS.gene050169:intron | 25.0% |
| !! | ATTATATGCTTTGGTTTAGT+TGG | + | chr7.2:11671088-11671107 | MS.gene050169:intron | 25.0% |
| !! | TGTATTATTTTCCATGAATC+AGG | + | chr7.2:11672233-11672252 | MS.gene050169:intron | 25.0% |
| !! | TTGTTATTGTTGTTGGTTAA+GGG | + | chr7.2:11672557-11672576 | MS.gene050169:intron | 25.0% |
| !!! | TGATATTGATAGCGTAAAAT+GGG | + | chr7.2:11671127-11671146 | MS.gene050169:intron | 25.0% |
| AACCTATGGCATCTTAATTA+TGG | + | chr7.2:11672586-11672605 | MS.gene050169:intron | 30.0% | |
| AATCTCTGATTCATGTTTCA+TGG | + | chr7.2:11671429-11671448 | MS.gene050169:intron | 30.0% | |
| ACCTATGGCATCTTAATTAT+GGG | + | chr7.2:11672587-11672606 | MS.gene050169:intron | 30.0% | |
| AGGAAAAATAAAATGGAACC+TGG | - | chr7.2:11671025-11671044 | None:intergenic | 30.0% | |
| ATGAATCAGGAAATATTGGA+AGG | + | chr7.2:11672246-11672265 | MS.gene050169:intron | 30.0% | |
| CTATCAGAAATCGTAAATCA+AGG | + | chr7.2:11671964-11671983 | MS.gene050169:CDS | 30.0% | |
| GCTTCGTATATACAATGAAT+TGG | + | chr7.2:11672506-11672525 | MS.gene050169:CDS | 30.0% | |
| GGAAAAATAAAATGGAACCT+GGG | - | chr7.2:11671024-11671043 | None:intergenic | 30.0% | |
| TGAATCAGGAAATATTGGAA+GGG | + | chr7.2:11672247-11672266 | MS.gene050169:intron | 30.0% | |
| TGATAACAGGAATATTCAGT+GGG | + | chr7.2:11670869-11670888 | MS.gene050169:CDS | 30.0% | |
| TTCCAATATTTCCTGATTCA+TGG | - | chr7.2:11672247-11672266 | None:intergenic | 30.0% | |
| TTCCATGAATCAGGAAATAT+TGG | + | chr7.2:11672242-11672261 | MS.gene050169:intron | 30.0% | |
| ! | ACTGTTGTTGTTATTGTTGT+TGG | + | chr7.2:11672550-11672569 | MS.gene050169:intron | 30.0% |
| ! | ATTGAAGATAGCATGGTTTT+TGG | + | chr7.2:11671858-11671877 | MS.gene050169:intron | 30.0% |
| ! | GTTGTTATTGTTGTTGGTTA+AGG | + | chr7.2:11672556-11672575 | MS.gene050169:intron | 30.0% |
| ! | TGTTATTGTTGTTGGTTAAG+GGG | + | chr7.2:11672558-11672577 | MS.gene050169:intron | 30.0% |
| ! | TTGGACTCATTTGTTAAATC+TGG | + | chr7.2:11671301-11671320 | MS.gene050169:intron | 30.0% |
| !! | AATATTCAGTGGGTTTTCTT+AGG | + | chr7.2:11670879-11670898 | MS.gene050169:CDS | 30.0% |
| !! | CTGATATTGATAGCGTAAAA+TGG | + | chr7.2:11671126-11671145 | MS.gene050169:intron | 30.0% |
| !!! | AAAATTTGTGCTTTTTCGAC+TGG | + | chr7.2:11671247-11671266 | MS.gene050169:intron | 30.0% |
| AAGTCCTTAAAAACTAGGAC+AGG | - | chr7.2:11672147-11672166 | None:intergenic | 35.0% | |
| ACAACAGTAACAGTAAGACA+AGG | - | chr7.2:11672538-11672557 | None:intergenic | 35.0% | |
| AGTCCTTAAAAACTAGGACA+GGG | - | chr7.2:11672146-11672165 | None:intergenic | 35.0% | |
| AGTGTGAATTGAAGATAGCA+TGG | + | chr7.2:11671851-11671870 | MS.gene050169:intron | 35.0% | |
| ATTAACATCAAGGGTGAGAA+TGG | + | chr7.2:11672384-11672403 | MS.gene050169:CDS | 35.0% | |
| ATTCTCACCCTTGATGTTAA+TGG | - | chr7.2:11672385-11672404 | None:intergenic | 35.0% | |
| CCTATGGCATCTTAATTATG+GGG | + | chr7.2:11672588-11672607 | MS.gene050169:intron | 35.0% | |
| CTATGGCATCTTAATTATGG+GGG | + | chr7.2:11672589-11672608 | MS.gene050169:intron | 35.0% | |
| GAATCAGGAAATATTGGAAG+GGG | + | chr7.2:11672248-11672267 | MS.gene050169:intron | 35.0% | |
| GAATCAGGTTTCATTCTTGA+TGG | + | chr7.2:11672057-11672076 | MS.gene050169:CDS | 35.0% | |
| GTGATAACAGGAATATTCAG+TGG | + | chr7.2:11670868-11670887 | MS.gene050169:CDS | 35.0% | |
| TCACACTCACACAAGAATTA+AGG | - | chr7.2:11671838-11671857 | None:intergenic | 35.0% | |
| TCTGGCTATGTAAGAAATCA+TGG | + | chr7.2:11671319-11671338 | MS.gene050169:intron | 35.0% | |
| TGAATATTCCTGTTATCACG+CGG | - | chr7.2:11670867-11670886 | None:intergenic | 35.0% | |
| TTAACATCAAGGGTGAGAAT+GGG | + | chr7.2:11672385-11672404 | MS.gene050169:CDS | 35.0% | |
| TTCATGTTTCATGGTTCAAC+TGG | + | chr7.2:11671438-11671457 | MS.gene050169:intron | 35.0% | |
| TTCCATCGAAAAATGACACA+AGG | + | chr7.2:11672205-11672224 | MS.gene050169:intron | 35.0% | |
| ! | TTAAGAGCATGCAACAACTT+TGG | - | chr7.2:11672823-11672842 | None:intergenic | 35.0% |
| !! | GCGTAAAATGGGTTATTCTA+TGG | + | chr7.2:11671138-11671157 | MS.gene050169:intron | 35.0% |
| !! | TTTTTCGACTGGCTATGTTT+TGG | + | chr7.2:11671258-11671277 | MS.gene050169:intron | 35.0% |
| !!! | CAAACTCCATTAGTTTTCCT+CGG | - | chr7.2:11672771-11672790 | None:intergenic | 35.0% |
| !!! | TTCCTTGTGTCATTTTTCGA+TGG | - | chr7.2:11672210-11672229 | None:intergenic | 35.0% |
| AAAATGGAACCTGGGAAGAA+AGG | - | chr7.2:11671016-11671035 | None:intergenic | 40.0% | |
| AAATGGAACCTGGGAAGAAA+GGG | - | chr7.2:11671015-11671034 | None:intergenic | 40.0% | |
| AACAACTTTGGCCAAGATTC+CGG | - | chr7.2:11672811-11672830 | None:intergenic | 40.0% | |
| ATGATTGTAGAGTCAACCTG+TGG | + | chr7.2:11672729-11672748 | MS.gene050169:intron | 40.0% | |
| CCATCAAAAAGCAGAATGCA+TGG | - | chr7.2:11671646-11671665 | None:intergenic | 40.0% | |
| CCCCATAATTAAGATGCCAT+AGG | - | chr7.2:11672591-11672610 | None:intergenic | 40.0% | |
| CTGAACCAGTAGTCAAAGAA+AGG | + | chr7.2:11672484-11672503 | MS.gene050169:CDS | 40.0% | |
| GTCCTTAAAAACTAGGACAG+GGG | - | chr7.2:11672145-11672164 | None:intergenic | 40.0% | |
| GTTGCCTCCATTAACATCAA+GGG | + | chr7.2:11672375-11672394 | MS.gene050169:CDS | 40.0% | |
| TGTTGCCTCCATTAACATCA+AGG | + | chr7.2:11672374-11672393 | MS.gene050169:CDS | 40.0% | |
| ! | AATGAAACCTGATTCGCCTT+TGG | - | chr7.2:11672052-11672071 | None:intergenic | 40.0% |
| ! | ACTGCTTGCTTTATTGTTCG+AGG | - | chr7.2:11672087-11672106 | None:intergenic | 40.0% |
| ! | CTTGTCACTTATCAGTGTGT+TGG | + | chr7.2:11671402-11671421 | MS.gene050169:intron | 40.0% |
| !! | TCATGGTTCAACTGGTTTGA+TGG | + | chr7.2:11671446-11671465 | MS.gene050169:intron | 40.0% |
| !!! | CCATGCATTCTGCTTTTTGA+TGG | + | chr7.2:11671643-11671662 | MS.gene050169:intron | 40.0% |
| !!! | CTTTTGTCACTTGTTGTCGT+TGG | + | chr7.2:11671527-11671546 | MS.gene050169:intron | 40.0% |
| AAAAACTAGGACAGGGGTGA+GGG | - | chr7.2:11672139-11672158 | None:intergenic | 45.0% | |
| AATGGAACCTGGGAAGAAAG+GGG | - | chr7.2:11671014-11671033 | None:intergenic | 45.0% | |
| ACAACTTTGGCCAAGATTCC+GGG | - | chr7.2:11672810-11672829 | None:intergenic | 45.0% | |
| AGCTTGGACATACAATGCTC+AGG | - | chr7.2:11672444-11672463 | None:intergenic | 45.0% | |
| AGGATGTGGTGCGTTTAACA+AGG | - | chr7.2:11670794-11670813 | None:intergenic | 45.0% | |
| ATATTCCTGTTATCACGCGG+TGG | - | chr7.2:11670864-11670883 | None:intergenic | 45.0% | |
| ATGTGGTGCGTTTAACAAGG+CGG | - | chr7.2:11670791-11670810 | None:intergenic | 45.0% | |
| ATTGACGCAAATCACGCAGA+TGG | - | chr7.2:11671210-11671229 | None:intergenic | 45.0% | |
| ATTGTAGAGTCAACCTGTGG+AGG | + | chr7.2:11672732-11672751 | MS.gene050169:intron | 45.0% | |
| CGAAGCCTTTCTTTGACTAC+TGG | - | chr7.2:11672492-11672511 | None:intergenic | 45.0% | |
| CGCTAAGGGATAAAAGGATG+TGG | - | chr7.2:11670808-11670827 | None:intergenic | 45.0% | |
| CTAATGGAGTTTGAGCTTCC+TGG | + | chr7.2:11672778-11672797 | MS.gene050169:CDS | 45.0% | |
| CTCACCCTTGATGTTAATGG+AGG | - | chr7.2:11672382-11672401 | None:intergenic | 45.0% | |
| TAAAAACTAGGACAGGGGTG+AGG | - | chr7.2:11672140-11672159 | None:intergenic | 45.0% | |
| TTGACGCAAATCACGCAGAT+GGG | - | chr7.2:11671209-11671228 | None:intergenic | 45.0% | |
| TTGCAAGCAGTGCTTCTTCT+CGG | - | chr7.2:11672308-11672327 | None:intergenic | 45.0% | |
| TTGGACATACAATGCTCAGG+AGG | - | chr7.2:11672441-11672460 | None:intergenic | 45.0% | |
| TTGTAGAGTCAACCTGTGGA+GGG | + | chr7.2:11672733-11672752 | MS.gene050169:intron | 45.0% | |
| !! | CACCCCTGTCCTAGTTTTTA+AGG | + | chr7.2:11672140-11672159 | MS.gene050169:intron | 45.0% |
| !! | GAGCTTGTTGTCTAAGAGAC+TGG | + | chr7.2:11672014-11672033 | MS.gene050169:CDS | 45.0% |
| !!! | CCATTAGTTTTCCTCGGCTA+CGG | - | chr7.2:11672765-11672784 | None:intergenic | 45.0% |
| !!! | TAATATTATTAATTTTTTTG+AGG | + | chr7.2:11671756-11671775 | MS.gene050169:intron | 5.0% |
| AAAACTAGGACAGGGGTGAG+GGG | - | chr7.2:11672138-11672157 | None:intergenic | 50.0% | |
| ACAATGCTCAGGAGGAAGCA+GGG | - | chr7.2:11672433-11672452 | None:intergenic | 50.0% | |
| AGAACTTGCAGTCAGTGTGG+AGG | + | chr7.2:11672342-11672361 | MS.gene050169:CDS | 50.0% | |
| AGGAGAACTTGCAGTCAGTG+TGG | + | chr7.2:11672339-11672358 | MS.gene050169:CDS | 50.0% | |
| AGGGGAGCCATACTAATTCC+AGG | - | chr7.2:11672414-11672433 | None:intergenic | 50.0% | |
| ATCCGAACGAGTGATGAGCT+TGG | - | chr7.2:11672460-11672479 | None:intergenic | 50.0% | |
| ATGGAACCTGGGAAGAAAGG+GGG | - | chr7.2:11671013-11671032 | None:intergenic | 50.0% | |
| ATGGAGTTTGAGCTTCCTGG+AGG | + | chr7.2:11672781-11672800 | MS.gene050169:CDS | 50.0% | |
| CCGTAGCCGAGGAAAACTAA+TGG | + | chr7.2:11672762-11672781 | MS.gene050169:CDS | 50.0% | |
| CTACGGTAAAATCCCTCCAC+AGG | - | chr7.2:11672748-11672767 | None:intergenic | 50.0% | |
| CTCATGGCGAACAAGATCTC+CGG | - | chr7.2:11670976-11670995 | None:intergenic | 50.0% | |
| GCACTGCTTGCAAAATGCCT+CGG | + | chr7.2:11672315-11672334 | MS.gene050169:CDS | 50.0% | |
| GGGGAGCCATACTAATTCCA+GGG | - | chr7.2:11672413-11672432 | None:intergenic | 50.0% | |
| GGTGTTTCTCACATCGCTAC+CGG | + | chr7.2:11670954-11670973 | MS.gene050169:CDS | 50.0% | |
| GTAGGTACCTTTACCAACGC+CGG | - | chr7.2:11670910-11670929 | None:intergenic | 50.0% | |
| GTCCAAGCTCATCACTCGTT+CGG | + | chr7.2:11672455-11672474 | MS.gene050169:CDS | 50.0% | |
| GTTAAGGGGACGTGAACCTA+TGG | + | chr7.2:11672572-11672591 | MS.gene050169:intron | 50.0% | |
| TACAATGCTCAGGAGGAAGC+AGG | - | chr7.2:11672434-11672453 | None:intergenic | 50.0% | |
| TAGCGATGTGAGAAACACCG+AGG | - | chr7.2:11670953-11670972 | None:intergenic | 50.0% | |
| TAGGTACCTTTACCAACGCC+GGG | - | chr7.2:11670909-11670928 | None:intergenic | 50.0% | |
| TCCACGCGCTAAGGGATAAA+AGG | - | chr7.2:11670814-11670833 | None:intergenic | 50.0% | |
| TGCTTGCAAAATGCCTCGGT+AGG | + | chr7.2:11672319-11672338 | MS.gene050169:CDS | 50.0% | |
| TGGAGTTTGAGCTTCCTGGA+GGG | + | chr7.2:11672782-11672801 | MS.gene050169:CDS | 50.0% | |
| TGGGTGCCCTGGAATTAGTA+TGG | + | chr7.2:11672404-11672423 | MS.gene050169:CDS | 50.0% | |
| TGTGGTGCGTTTAACAAGGC+GGG | - | chr7.2:11670790-11670809 | None:intergenic | 50.0% | |
| ! | AGGGGTGACAGACATTGACT+TGG | + | chr7.2:11672266-11672285 | MS.gene050169:CDS | 50.0% |
| ! | TCCTTTTATCCCTTAGCGCG+TGG | + | chr7.2:11670810-11670829 | MS.gene050169:CDS | 50.0% |
| ! | TGGGTTTTCTTAGGCTGTCC+CGG | + | chr7.2:11670888-11670907 | MS.gene050169:CDS | 50.0% |
| ! | TTGTCTAAGAGACTGGCCGA+AGG | + | chr7.2:11672021-11672040 | MS.gene050169:CDS | 50.0% |
| !! | GCGTTTAACAAGGCGGGTTA+TGG | - | chr7.2:11670784-11670803 | None:intergenic | 50.0% |
| !! | GGTGACAGACATTGACTTGG+TGG | + | chr7.2:11672269-11672288 | MS.gene050169:CDS | 50.0% |
| !! | TTCGCCTTTGGCTTGTCCTT+CGG | - | chr7.2:11672040-11672059 | None:intergenic | 50.0% |
| AAACACCGAGGAGGTTGCAG+AGG | - | chr7.2:11670941-11670960 | None:intergenic | 55.0% | |
| CAATGCTCAGGAGGAAGCAG+GGG | - | chr7.2:11672432-11672451 | None:intergenic | 55.0% | |
| CGATGTGAGAAACACCGAGG+AGG | - | chr7.2:11670950-11670969 | None:intergenic | 55.0% | |
| CGCCATGAGCTTTCCTCCAA+TGG | + | chr7.2:11670987-11671006 | MS.gene050169:CDS | 55.0% | |
| CGCGTGAGAATTTGAGGAGG+AGG | - | chr7.2:11670841-11670860 | None:intergenic | 55.0% | |
| GACTGCAAGTTCTCCTACCG+AGG | - | chr7.2:11672335-11672354 | None:intergenic | 55.0% | |
| GAGGAGAATCCACGCGCTAA+GGG | - | chr7.2:11670822-11670841 | None:intergenic | 55.0% | |
| GGACAAGCCAAAGGCGAATC+AGG | + | chr7.2:11672042-11672061 | MS.gene050169:CDS | 55.0% | |
| GGCCATTGGAGGAAAGCTCA+TGG | - | chr7.2:11670992-11671011 | None:intergenic | 55.0% | |
| TGGCGCGTGAGAATTTGAGG+AGG | - | chr7.2:11670844-11670863 | None:intergenic | 55.0% | |
| ! | GAGGGATTTTACCGTAGCCG+AGG | + | chr7.2:11672751-11672770 | MS.gene050169:CDS | 55.0% |
| AAGGGTGAGAATGGGTGCCC+TGG | + | chr7.2:11672393-11672412 | MS.gene050169:CDS | 60.0% | |
| CAAGATTCCGGGATCCCTCC+AGG | - | chr7.2:11672799-11672818 | None:intergenic | 60.0% | |
| CAATGGCCCCCTTTCTTCCC+AGG | + | chr7.2:11671004-11671023 | MS.gene050169:CDS | 60.0% | |
| CGGTGGCGCGTGAGAATTTG+AGG | - | chr7.2:11670847-11670866 | None:intergenic | 60.0% | |
| CTGGAGGGATCCCGGAATCT+TGG | + | chr7.2:11672797-11672816 | MS.gene050169:CDS | 60.0% | |
| CTGGCCGAAGGACAAGCCAA+AGG | + | chr7.2:11672033-11672052 | MS.gene050169:CDS | 60.0% | |
| CTGGGAAGAAAGGGGGCCAT+TGG | - | chr7.2:11671006-11671025 | None:intergenic | 60.0% | |
| GGAAGAAAGGGGGCCATTGG+AGG | - | chr7.2:11671003-11671022 | None:intergenic | 60.0% | |
| GGAGGAGAATCCACGCGCTA+AGG | - | chr7.2:11670823-11670842 | None:intergenic | 60.0% | |
| TGAGCTTCCTGGAGGGATCC+CGG | + | chr7.2:11672789-11672808 | MS.gene050169:CDS | 60.0% | |
| TTCTTAGGCTGTCCCGGCGT+TGG | + | chr7.2:11670894-11670913 | MS.gene050169:CDS | 60.0% | |
| ACGCGCCACCGCGTGATAAC+AGG | + | chr7.2:11670856-11670875 | MS.gene050169:CDS | 65.0% | |
| AGCCGCCTCTGCAACCTCCT+CGG | + | chr7.2:11670933-11670952 | MS.gene050169:CDS | 65.0% | |
| CACCGAGGAGGTTGCAGAGG+CGG | - | chr7.2:11670938-11670957 | None:intergenic | 65.0% | |
| !! | GGCTGTCCCGGCGTTGGTAA+AGG | + | chr7.2:11670900-11670919 | MS.gene050169:CDS | 65.0% |
| GAGGAGGTTGCAGAGGCGGC+TGG | - | chr7.2:11670934-11670953 | None:intergenic | 70.0% | |
| GTTGCAGAGGCGGCTGGCGT+AGG | - | chr7.2:11670928-11670947 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 11670774 | 11672879 | 11670774 | ID=MS.gene050169 |
| chr7.2 | mRNA | 11670774 | 11672879 | 11670774 | ID=MS.gene050169.t1;Parent=MS.gene050169 |
| chr7.2 | exon | 11670774 | 11671025 | 11670774 | ID=MS.gene050169.t1.exon1;Parent=MS.gene050169.t1 |
| chr7.2 | CDS | 11670774 | 11671025 | 11670774 | ID=cds.MS.gene050169.t1;Parent=MS.gene050169.t1 |
| chr7.2 | exon | 11671964 | 11672104 | 11671964 | ID=MS.gene050169.t1.exon2;Parent=MS.gene050169.t1 |
| chr7.2 | CDS | 11671964 | 11672104 | 11671964 | ID=cds.MS.gene050169.t1;Parent=MS.gene050169.t1 |
| chr7.2 | exon | 11672255 | 11672527 | 11672255 | ID=MS.gene050169.t1.exon3;Parent=MS.gene050169.t1 |
| chr7.2 | CDS | 11672255 | 11672527 | 11672255 | ID=cds.MS.gene050169.t1;Parent=MS.gene050169.t1 |
| chr7.2 | exon | 11672739 | 11672879 | 11672739 | ID=MS.gene050169.t1.exon4;Parent=MS.gene050169.t1 |
| chr7.2 | CDS | 11672739 | 11672879 | 11672739 | ID=cds.MS.gene050169.t1;Parent=MS.gene050169.t1 |
| Gene Sequence |
| Protein sequence |
