Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09924.t1 | AFK35012.1 | 96.4 | 248 | 9 | 0 | 2 | 249 | 21 | 268 | 1.20E-128 | 469.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09924.t1 | Q05466 | 71.8 | 234 | 53 | 5 | 18 | 249 | 62 | 284 | 4.5e-79 | 295.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09924.t1 | B7FJ62 | 96.4 | 248 | 9 | 0 | 2 | 249 | 49 | 296 | 8.8e-129 | 469.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene09924.t1 | TF | HB-HD-ZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050146 | MS.gene09924 | 0.975865 | 9.62E-141 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09924.t1 | MTR_5g013010 | 96.371 | 248 | 9 | 0 | 2 | 249 | 49 | 296 | 6.62e-178 | 491 |
MS.gene09924.t1 | MTR_4g100550 | 78.689 | 244 | 41 | 7 | 8 | 246 | 42 | 279 | 6.79e-126 | 358 |
MS.gene09924.t1 | MTR_5g013010 | 95.683 | 139 | 6 | 0 | 2 | 140 | 49 | 187 | 3.25e-92 | 270 |
MS.gene09924.t1 | MTR_8g006705 | 60.305 | 262 | 76 | 8 | 1 | 241 | 49 | 303 | 1.54e-88 | 265 |
MS.gene09924.t1 | MTR_7g093430 | 64.516 | 186 | 58 | 4 | 25 | 203 | 89 | 273 | 2.05e-68 | 213 |
MS.gene09924.t1 | MTR_1g054285 | 60.204 | 196 | 54 | 4 | 24 | 204 | 82 | 268 | 6.25e-67 | 209 |
MS.gene09924.t1 | MTR_2g061030 | 73.026 | 152 | 35 | 4 | 65 | 213 | 175 | 323 | 3.84e-66 | 208 |
MS.gene09924.t1 | MTR_4g097600 | 78.049 | 123 | 26 | 1 | 80 | 202 | 118 | 239 | 4.19e-61 | 193 |
MS.gene09924.t1 | MTR_5g014890 | 65.972 | 144 | 46 | 2 | 80 | 221 | 114 | 256 | 3.63e-60 | 191 |
MS.gene09924.t1 | MTR_1g017090 | 51.351 | 185 | 75 | 6 | 44 | 216 | 84 | 265 | 3.65e-52 | 171 |
MS.gene09924.t1 | MTR_4g084750 | 62.097 | 124 | 42 | 1 | 83 | 201 | 59 | 182 | 6.81e-46 | 152 |
MS.gene09924.t1 | MTR_2g038625 | 57.627 | 118 | 50 | 0 | 89 | 206 | 82 | 199 | 9.67e-42 | 142 |
MS.gene09924.t1 | MTR_2g038580 | 57.627 | 118 | 50 | 0 | 89 | 206 | 82 | 199 | 9.67e-42 | 142 |
MS.gene09924.t1 | MTR_3g103590 | 65.217 | 115 | 38 | 2 | 88 | 202 | 144 | 256 | 2.57e-39 | 138 |
MS.gene09924.t1 | MTR_4g126900 | 61.404 | 114 | 41 | 1 | 91 | 201 | 90 | 203 | 5.48e-39 | 135 |
MS.gene09924.t1 | MTR_7g010020 | 42.537 | 134 | 63 | 3 | 50 | 178 | 49 | 173 | 3.74e-20 | 87.0 |
MS.gene09924.t1 | MTR_5g038280 | 39.535 | 172 | 77 | 6 | 31 | 181 | 20 | 185 | 1.22e-19 | 86.7 |
MS.gene09924.t1 | MTR_8g468210 | 41.463 | 123 | 70 | 2 | 53 | 175 | 43 | 163 | 4.18e-19 | 84.3 |
MS.gene09924.t1 | MTR_6g007647 | 50.000 | 88 | 44 | 0 | 89 | 176 | 33 | 120 | 5.50e-19 | 83.6 |
MS.gene09924.t1 | MTR_6g007647 | 50.000 | 88 | 44 | 0 | 89 | 176 | 67 | 154 | 1.05e-18 | 83.6 |
MS.gene09924.t1 | MTR_4g107650 | 52.632 | 95 | 38 | 1 | 87 | 174 | 93 | 187 | 3.52e-18 | 82.8 |
MS.gene09924.t1 | MTR_5g039000 | 39.516 | 124 | 75 | 0 | 53 | 176 | 41 | 164 | 1.01e-17 | 80.5 |
MS.gene09924.t1 | MTR_6g011610 | 46.000 | 100 | 53 | 1 | 78 | 176 | 84 | 183 | 1.26e-17 | 80.5 |
MS.gene09924.t1 | MTR_6g011610 | 46.000 | 100 | 53 | 1 | 78 | 176 | 65 | 164 | 1.86e-17 | 79.7 |
MS.gene09924.t1 | MTR_1g061660 | 47.191 | 89 | 47 | 0 | 89 | 177 | 59 | 147 | 2.25e-17 | 79.0 |
MS.gene09924.t1 | MTR_3g080100 | 48.421 | 95 | 42 | 1 | 89 | 176 | 20 | 114 | 2.46e-17 | 78.6 |
MS.gene09924.t1 | MTR_3g080100 | 38.926 | 149 | 65 | 4 | 50 | 176 | 9 | 153 | 2.81e-17 | 79.0 |
MS.gene09924.t1 | MTR_7g103340 | 45.455 | 88 | 48 | 0 | 89 | 176 | 63 | 150 | 1.12e-16 | 77.0 |
MS.gene09924.t1 | MTR_8g089895 | 47.475 | 99 | 45 | 1 | 85 | 176 | 50 | 148 | 2.66e-16 | 77.0 |
MS.gene09924.t1 | MTR_3g086790 | 40.625 | 128 | 68 | 2 | 81 | 200 | 52 | 179 | 4.49e-16 | 76.3 |
MS.gene09924.t1 | MTR_8g469430 | 46.809 | 94 | 43 | 1 | 89 | 175 | 89 | 182 | 9.17e-16 | 75.1 |
MS.gene09924.t1 | MTR_8g026960 | 42.683 | 82 | 47 | 0 | 93 | 174 | 38 | 119 | 7.17e-12 | 63.9 |
MS.gene09924.t1 | MTR_5g029320 | 31.690 | 142 | 91 | 1 | 33 | 174 | 42 | 177 | 2.48e-11 | 63.5 |
MS.gene09924.t1 | MTR_3g092150 | 40.860 | 93 | 48 | 1 | 92 | 177 | 41 | 133 | 8.66e-11 | 60.8 |
MS.gene09924.t1 | MTR_5g019650 | 41.905 | 105 | 59 | 1 | 81 | 183 | 45 | 149 | 9.85e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09924.t1 | AT4G16780 | 72.926 | 229 | 49 | 5 | 23 | 249 | 67 | 284 | 3.67e-99 | 291 |
MS.gene09924.t1 | AT5G47370 | 66.805 | 241 | 56 | 9 | 24 | 249 | 52 | 283 | 1.42e-98 | 289 |
MS.gene09924.t1 | AT4G17460 | 64.228 | 246 | 60 | 8 | 18 | 249 | 51 | 282 | 3.60e-96 | 283 |
MS.gene09924.t1 | AT3G60390 | 65.833 | 240 | 55 | 10 | 23 | 240 | 75 | 309 | 1.14e-88 | 265 |
MS.gene09924.t1 | AT2G44910 | 60.851 | 235 | 75 | 7 | 23 | 241 | 83 | 316 | 1.56e-80 | 244 |
MS.gene09924.t1 | AT5G06710 | 61.111 | 198 | 65 | 6 | 43 | 230 | 134 | 329 | 4.84e-68 | 213 |
MS.gene09924.t1 | AT4G37790 | 60.000 | 185 | 55 | 5 | 60 | 226 | 88 | 271 | 1.54e-62 | 197 |
MS.gene09924.t1 | AT2G22800 | 72.308 | 130 | 32 | 2 | 76 | 202 | 97 | 225 | 1.47e-58 | 187 |
MS.gene09924.t1 | AT2G01430 | 52.299 | 174 | 65 | 4 | 45 | 209 | 95 | 259 | 1.68e-44 | 151 |
MS.gene09924.t1 | AT1G70920 | 57.463 | 134 | 43 | 3 | 80 | 210 | 27 | 149 | 2.11e-38 | 132 |
MS.gene09924.t1 | AT1G70920 | 57.463 | 134 | 43 | 3 | 80 | 210 | 57 | 179 | 2.33e-38 | 133 |
MS.gene09924.t1 | AT5G06710 | 58.879 | 107 | 34 | 4 | 44 | 140 | 135 | 241 | 1.21e-27 | 107 |
MS.gene09924.t1 | AT1G69780 | 41.221 | 131 | 67 | 2 | 51 | 176 | 47 | 172 | 3.22e-20 | 87.8 |
MS.gene09924.t1 | AT2G01430 | 47.059 | 119 | 49 | 3 | 45 | 157 | 95 | 205 | 2.40e-19 | 84.0 |
MS.gene09924.t1 | AT1G26960 | 46.341 | 123 | 61 | 4 | 56 | 176 | 39 | 158 | 1.21e-18 | 82.8 |
MS.gene09924.t1 | AT3G01470 | 48.387 | 93 | 41 | 1 | 89 | 174 | 68 | 160 | 4.34e-17 | 79.0 |
MS.gene09924.t1 | AT5G03790 | 46.067 | 89 | 48 | 0 | 89 | 177 | 77 | 165 | 1.50e-15 | 73.9 |
MS.gene09924.t1 | AT5G15150 | 37.097 | 124 | 71 | 1 | 53 | 176 | 86 | 202 | 2.01e-15 | 74.7 |
MS.gene09924.t1 | AT1G27045 | 50.000 | 96 | 41 | 2 | 89 | 177 | 68 | 163 | 2.54e-15 | 73.6 |
MS.gene09924.t1 | AT3G01220 | 45.745 | 94 | 47 | 1 | 89 | 178 | 87 | 180 | 3.92e-15 | 73.6 |
MS.gene09924.t1 | AT1G27045 | 59.091 | 66 | 27 | 0 | 89 | 154 | 17 | 82 | 5.82e-15 | 71.2 |
MS.gene09924.t1 | AT1G27045 | 59.091 | 66 | 27 | 0 | 89 | 154 | 25 | 90 | 6.21e-15 | 71.2 |
MS.gene09924.t1 | AT1G27045 | 59.091 | 66 | 27 | 0 | 89 | 154 | 25 | 90 | 6.21e-15 | 71.2 |
MS.gene09924.t1 | AT1G27045 | 59.091 | 66 | 27 | 0 | 89 | 154 | 68 | 133 | 8.00e-15 | 71.6 |
MS.gene09924.t1 | AT4G40060 | 44.330 | 97 | 47 | 1 | 87 | 176 | 57 | 153 | 1.89e-14 | 71.6 |
MS.gene09924.t1 | AT5G65310 | 35.417 | 144 | 84 | 3 | 86 | 222 | 69 | 210 | 2.39e-14 | 71.6 |
MS.gene09924.t1 | AT5G65310 | 32.948 | 173 | 97 | 5 | 86 | 249 | 51 | 213 | 2.75e-14 | 71.2 |
MS.gene09924.t1 | AT2G22430 | 44.792 | 96 | 49 | 1 | 87 | 178 | 60 | 155 | 3.20e-14 | 71.2 |
MS.gene09924.t1 | AT2G46680 | 40.909 | 88 | 52 | 0 | 92 | 179 | 35 | 122 | 2.25e-13 | 68.2 |
MS.gene09924.t1 | AT2G46680 | 41.053 | 95 | 52 | 1 | 92 | 182 | 35 | 129 | 2.28e-13 | 68.2 |
MS.gene09924.t1 | AT5G03790 | 43.956 | 91 | 51 | 0 | 89 | 179 | 77 | 167 | 5.87e-13 | 65.9 |
MS.gene09924.t1 | AT2G36610 | 39.796 | 98 | 51 | 1 | 88 | 177 | 70 | 167 | 6.51e-13 | 65.9 |
MS.gene09924.t1 | AT4G36740 | 43.678 | 87 | 49 | 0 | 89 | 175 | 56 | 142 | 4.67e-12 | 63.9 |
MS.gene09924.t1 | AT4G36740 | 43.678 | 87 | 49 | 0 | 89 | 175 | 55 | 141 | 5.03e-12 | 63.9 |
MS.gene09924.t1 | AT5G53980 | 42.391 | 92 | 53 | 0 | 84 | 175 | 6 | 97 | 2.85e-11 | 60.5 |
MS.gene09924.t1 | AT2G18550 | 43.678 | 87 | 49 | 0 | 89 | 175 | 61 | 147 | 6.89e-11 | 60.8 |
Find 56 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGAATAATTGATTGGTCTT+TGG | 0.254387 | 5.4:+6688207 | None:intergenic |
GGAAATGGACGTGGGTGATT+TGG | 0.317565 | 5.4:+6687434 | None:intergenic |
ATTGGCACTTGCAAAACAAT+TGG | 0.337338 | 5.4:-6688053 | MS.gene09924:CDS |
GCCCATGGTCCCACAGGAAA+TGG | 0.346020 | 5.4:+6687419 | None:intergenic |
GTGCTAGACAAGTTGAAGTT+TGG | 0.390504 | 5.4:-6688024 | MS.gene09924:CDS |
AAGAAGACGCTGAAACTTCA+AGG | 0.402562 | 5.4:-6688246 | MS.gene09924:CDS |
TCTCTTCTAGAATAATTGAT+TGG | 0.421188 | 5.4:+6688200 | None:intergenic |
GATGTGAATCGGTTACCTTC+TGG | 0.421492 | 5.4:-6688406 | MS.gene09924:CDS |
TTTACATGCAGATCGGGATT+CGG | 0.433835 | 5.4:-6688473 | MS.gene09924:CDS |
ACACTTGAAACGGTGCTGTT+TGG | 0.443597 | 5.4:+6688349 | None:intergenic |
TTGGCACTTGCAAAACAATT+GGG | 0.452760 | 5.4:-6688052 | MS.gene09924:CDS |
GGGCACATGGTAAGAGTTGT+TGG | 0.457834 | 5.4:+6687524 | None:intergenic |
GTCCATTTCCTGTGGGACCA+TGG | 0.458770 | 5.4:-6687421 | MS.gene09924:CDS |
TGAAAATAGACGGTTACAAA+AGG | 0.474850 | 5.4:-6687606 | MS.gene09924:CDS |
TTTACCACTCACACTTGAAA+CGG | 0.484021 | 5.4:+6688339 | None:intergenic |
TCCATTTCCTGTGGGACCAT+GGG | 0.490692 | 5.4:-6687420 | MS.gene09924:CDS |
AGAAGCGAAAGAGAAGTTAC+AGG | 0.494456 | 5.4:-6688316 | MS.gene09924:CDS |
GCAGCATCAACGGCAGATGA+TGG | 0.502736 | 5.4:+6687479 | None:intergenic |
ATCCGTACAAGTTAAGATCT+AGG | 0.515404 | 5.4:+6687353 | None:intergenic |
TCATTTGCATGTAGAATTGT+GGG | 0.520585 | 5.4:+6687552 | None:intergenic |
GTCATTTGCATGTAGAATTG+TGG | 0.521859 | 5.4:+6687551 | None:intergenic |
TCGATTCCTCGGAGAAGTAA+AGG | 0.525636 | 5.4:+6688427 | None:intergenic |
TCCGAGGAATCGATGTGAAT+CGG | 0.527394 | 5.4:-6688417 | MS.gene09924:CDS |
GCTGTGGCCCATGGTCCCAC+AGG | 0.538822 | 5.4:+6687413 | None:intergenic |
TCAAAGGTCCTATGTTGGAT+AGG | 0.542840 | 5.4:+6687386 | None:intergenic |
ACGACGCGTGGCAGCATCAA+CGG | 0.548952 | 5.4:+6687469 | None:intergenic |
ATGGAAAGAGATTGTTCAAG+AGG | 0.550270 | 5.4:-6688280 | MS.gene09924:CDS |
TGCCACGCGTCGTCATCCTA+TGG | 0.554799 | 5.4:-6687459 | MS.gene09924:CDS |
ACCGATTCACATCGATTCCT+CGG | 0.556594 | 5.4:+6688416 | None:intergenic |
CGTGGGTGATTTGGAGCCAT+AGG | 0.560215 | 5.4:+6687443 | None:intergenic |
CACATGGTAAGAGTTGTTGG+TGG | 0.564954 | 5.4:+6687527 | None:intergenic |
ATAGGAGCAGCTGTGGCCCA+TGG | 0.566808 | 5.4:+6687404 | None:intergenic |
GGTCCCACAGGAAATGGACG+TGG | 0.582860 | 5.4:+6687425 | None:intergenic |
GGTTTCAAAATCGTAGAGCA+AGG | 0.583437 | 5.4:-6688003 | MS.gene09924:intron |
ACAGCAACACGCTCACAAGA+GGG | 0.586849 | 5.4:+6687503 | None:intergenic |
ATGTTGGATAGGAGCAGCTG+TGG | 0.588541 | 5.4:+6687397 | None:intergenic |
CAGCTGCTCCTATCCAACAT+AGG | 0.588914 | 5.4:-6687394 | MS.gene09924:CDS |
GTGTATCAAAGGTCCTATGT+TGG | 0.591308 | 5.4:+6687381 | None:intergenic |
CACCCACGTCCATTTCCTGT+GGG | 0.600865 | 5.4:-6687428 | MS.gene09924:CDS |
AACAGCAACACGCTCACAAG+AGG | 0.612400 | 5.4:+6687502 | None:intergenic |
ATCTAACGGATGAAAATAGA+CGG | 0.614300 | 5.4:-6687616 | MS.gene09924:CDS |
TCACCCACGTCCATTTCCTG+TGG | 0.615645 | 5.4:-6687429 | MS.gene09924:CDS |
TCTAGGACGGAGTGTATCAA+AGG | 0.615968 | 5.4:+6687370 | None:intergenic |
TCTTCACAATCAGCACCAGA+AGG | 0.621185 | 5.4:+6688391 | None:intergenic |
ACGCTCACAAGAGGGGCACA+TGG | 0.624285 | 5.4:+6687511 | None:intergenic |
GCTGATTGTGAAGAAGAAGC+AGG | 0.645646 | 5.4:-6688382 | MS.gene09924:CDS |
GTACAAGTTAAGATCTAGGA+CGG | 0.655097 | 5.4:+6687357 | None:intergenic |
AGCCATAGGATGACGACGCG+TGG | 0.657092 | 5.4:+6687457 | None:intergenic |
TACAGGTGAAGATCTTGACA+TGG | 0.657130 | 5.4:-6688299 | MS.gene09924:CDS |
CAGCAACACGCTCACAAGAG+GGG | 0.670133 | 5.4:+6687504 | None:intergenic |
AGCACCGTTTCAAGTGTGAG+TGG | 0.674395 | 5.4:-6688343 | MS.gene09924:CDS |
AGACATGCAGAATCGAAGAA+CGG | 0.674956 | 5.4:-6688450 | MS.gene09924:CDS |
GAACGGCCTTTACTTCTCCG+AGG | 0.691005 | 5.4:-6688433 | MS.gene09924:CDS |
GTCCCACAGGAAATGGACGT+GGG | 0.703771 | 5.4:+6687426 | None:intergenic |
CATTTGCATGTAGAATTGTG+GGG | 0.706166 | 5.4:+6687553 | None:intergenic |
AAGATGCTGTGAGAATCTAA+CGG | 0.718794 | 5.4:-6687630 | MS.gene09924:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAAATTATATTTTTTTTT+AGG | - | chr5.4:6687733-6687752 | MS.gene09924:intron | 0.0% |
!! | CAATATTTATTTATTTATGT+TGG | - | chr5.4:6688135-6688154 | MS.gene09924:intron | 10.0% |
!!! | TTATCAATATTTTTTTTTGA+AGG | - | chr5.4:6688106-6688125 | MS.gene09924:intron | 10.0% |
!! | TTACACTTAATTAATACTTA+CGG | + | chr5.4:6687704-6687723 | None:intergenic | 15.0% |
!! | TACACTTAATTAATACTTAC+GGG | + | chr5.4:6687703-6687722 | None:intergenic | 20.0% |
!! | TTGTTTGTAGAAACAAAAAT+TGG | - | chr5.4:6687780-6687799 | MS.gene09924:intron | 20.0% |
! | ACACTTAATTAATACTTACG+GGG | + | chr5.4:6687702-6687721 | None:intergenic | 25.0% |
! | TTAAAACTCAAAGAGATATC+CGG | - | chr5.4:6687909-6687928 | MS.gene09924:intron | 25.0% |
!! | GTTTGTTAAATTGTGATTTC+AGG | - | chr5.4:6688157-6688176 | MS.gene09924:intron | 25.0% |
!!! | ATCTTATTTTACATGCAGAT+CGG | - | chr5.4:6687371-6687390 | MS.gene09924:CDS | 25.0% |
!!! | TAGAATAATTGATTGGTCTT+TGG | + | chr5.4:6687647-6687666 | None:intergenic | 25.0% |
!!! | TCTCTTCTAGAATAATTGAT+TGG | + | chr5.4:6687654-6687673 | None:intergenic | 25.0% |
!!! | TTGACTAGTCTTTATTTAGT+TGG | - | chr5.4:6687880-6687899 | MS.gene09924:intron | 25.0% |
TCATTTGCATGTAGAATTGT+GGG | + | chr5.4:6688302-6688321 | None:intergenic | 30.0% | |
TGAAAATAGACGGTTACAAA+AGG | - | chr5.4:6688245-6688264 | MS.gene09924:CDS | 30.0% | |
! | ATCTAACGGATGAAAATAGA+CGG | - | chr5.4:6688235-6688254 | MS.gene09924:CDS | 30.0% |
!!! | TCTTATTTTACATGCAGATC+GGG | - | chr5.4:6687372-6687391 | MS.gene09924:CDS | 30.0% |
AAGATGCTGTGAGAATCTAA+CGG | - | chr5.4:6688221-6688240 | MS.gene09924:CDS | 35.0% | |
ATGGAAAGAGATTGTTCAAG+AGG | - | chr5.4:6687571-6687590 | MS.gene09924:CDS | 35.0% | |
ATTGGCACTTGCAAAACAAT+TGG | - | chr5.4:6687798-6687817 | MS.gene09924:intron | 35.0% | |
CATTTGCATGTAGAATTGTG+GGG | + | chr5.4:6688301-6688320 | None:intergenic | 35.0% | |
GTCATTTGCATGTAGAATTG+TGG | + | chr5.4:6688303-6688322 | None:intergenic | 35.0% | |
TTGGCACTTGCAAAACAATT+GGG | - | chr5.4:6687799-6687818 | MS.gene09924:intron | 35.0% | |
TTTACCACTCACACTTGAAA+CGG | + | chr5.4:6687515-6687534 | None:intergenic | 35.0% | |
TTTCATGTTTGGTATCACGT+TGG | - | chr5.4:6688031-6688050 | MS.gene09924:CDS | 35.0% | |
! | GAGATGCATGTTTTCATGTT+TGG | - | chr5.4:6688020-6688039 | MS.gene09924:CDS | 35.0% |
AAGAAGACGCTGAAACTTCA+AGG | - | chr5.4:6687605-6687624 | MS.gene09924:CDS | 40.0% | |
AGAAGCGAAAGAGAAGTTAC+AGG | - | chr5.4:6687535-6687554 | MS.gene09924:CDS | 40.0% | |
AGACATGCAGAATCGAAGAA+CGG | - | chr5.4:6687401-6687420 | MS.gene09924:CDS | 40.0% | |
GGTTTCAAAATCGTAGAGCA+AGG | - | chr5.4:6687848-6687867 | MS.gene09924:intron | 40.0% | |
GTGTATCAAAGGTCCTATGT+TGG | + | chr5.4:6688473-6688492 | None:intergenic | 40.0% | |
TACAGGTGAAGATCTTGACA+TGG | - | chr5.4:6687552-6687571 | MS.gene09924:CDS | 40.0% | |
TCAAAGGTCCTATGTTGGAT+AGG | + | chr5.4:6688468-6688487 | None:intergenic | 40.0% | |
TTTACATGCAGATCGGGATT+CGG | - | chr5.4:6687378-6687397 | MS.gene09924:CDS | 40.0% | |
! | GTGCTAGACAAGTTGAAGTT+TGG | - | chr5.4:6687827-6687846 | MS.gene09924:intron | 40.0% |
CACATGGTAAGAGTTGTTGG+TGG | + | chr5.4:6688327-6688346 | None:intergenic | 45.0% | |
GATGTGAATCGGTTACCTTC+TGG | - | chr5.4:6687445-6687464 | MS.gene09924:CDS | 45.0% | |
GCTGATTGTGAAGAAGAAGC+AGG | - | chr5.4:6687469-6687488 | MS.gene09924:CDS | 45.0% | |
TCCGAGGAATCGATGTGAAT+CGG | - | chr5.4:6687434-6687453 | MS.gene09924:CDS | 45.0% | |
TCGATTCCTCGGAGAAGTAA+AGG | + | chr5.4:6687427-6687446 | None:intergenic | 45.0% | |
TCTTCACAATCAGCACCAGA+AGG | + | chr5.4:6687463-6687482 | None:intergenic | 45.0% | |
! | TCTAGGACGGAGTGTATCAA+AGG | + | chr5.4:6688484-6688503 | None:intergenic | 45.0% |
!! | ACACTTGAAACGGTGCTGTT+TGG | + | chr5.4:6687505-6687524 | None:intergenic | 45.0% |
!! | ACCGATTCACATCGATTCCT+CGG | + | chr5.4:6687438-6687457 | None:intergenic | 45.0% |
AACAGCAACACGCTCACAAG+AGG | + | chr5.4:6688352-6688371 | None:intergenic | 50.0% | |
ACAGCAACACGCTCACAAGA+GGG | + | chr5.4:6688351-6688370 | None:intergenic | 50.0% | |
AGAGATATCCGGTGCATGTC+TGG | - | chr5.4:6687920-6687939 | MS.gene09924:intron | 50.0% | |
ATGTTGGATAGGAGCAGCTG+TGG | + | chr5.4:6688457-6688476 | None:intergenic | 50.0% | |
CAGCTGCTCCTATCCAACAT+AGG | - | chr5.4:6688457-6688476 | MS.gene09924:CDS | 50.0% | |
CTGTGATACCAGACATGCAC+CGG | + | chr5.4:6687931-6687950 | None:intergenic | 50.0% | |
GGAAATGGACGTGGGTGATT+TGG | + | chr5.4:6688420-6688439 | None:intergenic | 50.0% | |
GGGCACATGGTAAGAGTTGT+TGG | + | chr5.4:6688330-6688349 | None:intergenic | 50.0% | |
TCCATTTCCTGTGGGACCAT+GGG | - | chr5.4:6688431-6688450 | MS.gene09924:CDS | 50.0% | |
! | AGCACCGTTTCAAGTGTGAG+TGG | - | chr5.4:6687508-6687527 | MS.gene09924:CDS | 50.0% |
CACCCACGTCCATTTCCTGT+GGG | - | chr5.4:6688423-6688442 | MS.gene09924:CDS | 55.0% | |
CAGCAACACGCTCACAAGAG+GGG | + | chr5.4:6688350-6688369 | None:intergenic | 55.0% | |
GAACGGCCTTTACTTCTCCG+AGG | - | chr5.4:6687418-6687437 | MS.gene09924:CDS | 55.0% | |
GCAGCATCAACGGCAGATGA+TGG | + | chr5.4:6688375-6688394 | None:intergenic | 55.0% | |
GTCCATTTCCTGTGGGACCA+TGG | - | chr5.4:6688430-6688449 | MS.gene09924:CDS | 55.0% | |
GTCCCACAGGAAATGGACGT+GGG | + | chr5.4:6688428-6688447 | None:intergenic | 55.0% | |
TCACCCACGTCCATTTCCTG+TGG | - | chr5.4:6688422-6688441 | MS.gene09924:CDS | 55.0% | |
! | CGTGGGTGATTTGGAGCCAT+AGG | + | chr5.4:6688411-6688430 | None:intergenic | 55.0% |
ACGACGCGTGGCAGCATCAA+CGG | + | chr5.4:6688385-6688404 | None:intergenic | 60.0% | |
AGCCATAGGATGACGACGCG+TGG | + | chr5.4:6688397-6688416 | None:intergenic | 60.0% | |
ATAGGAGCAGCTGTGGCCCA+TGG | + | chr5.4:6688450-6688469 | None:intergenic | 60.0% | |
GCCCATGGTCCCACAGGAAA+TGG | + | chr5.4:6688435-6688454 | None:intergenic | 60.0% | |
GGTCCCACAGGAAATGGACG+TGG | + | chr5.4:6688429-6688448 | None:intergenic | 60.0% | |
TGCCACGCGTCGTCATCCTA+TGG | - | chr5.4:6688392-6688411 | MS.gene09924:CDS | 60.0% | |
! | ACGCTCACAAGAGGGGCACA+TGG | + | chr5.4:6688343-6688362 | None:intergenic | 60.0% |
GCTGTGGCCCATGGTCCCAC+AGG | + | chr5.4:6688441-6688460 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 6687364 | 6688509 | 6687364 | ID=MS.gene09924 |
chr5.4 | mRNA | 6687364 | 6688509 | 6687364 | ID=MS.gene09924.t1;Parent=MS.gene09924 |
chr5.4 | exon | 6688171 | 6688509 | 6688171 | ID=MS.gene09924.t1.exon1;Parent=MS.gene09924.t1 |
chr5.4 | CDS | 6688171 | 6688509 | 6688171 | ID=cds.MS.gene09924.t1;Parent=MS.gene09924.t1 |
chr5.4 | exon | 6688004 | 6688083 | 6688004 | ID=MS.gene09924.t1.exon2;Parent=MS.gene09924.t1 |
chr5.4 | CDS | 6688004 | 6688083 | 6688004 | ID=cds.MS.gene09924.t1;Parent=MS.gene09924.t1 |
chr5.4 | exon | 6687364 | 6687694 | 6687364 | ID=MS.gene09924.t1.exon3;Parent=MS.gene09924.t1 |
chr5.4 | CDS | 6687364 | 6687694 | 6687364 | ID=cds.MS.gene09924.t1;Parent=MS.gene09924.t1 |
Gene Sequence |
Protein sequence |