Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20142.t1 | XP_003630681.1 | 99.3 | 427 | 3 | 0 | 1 | 427 | 1 | 427 | 7.10E-249 | 869.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20142.t1 | Q94AA4 | 81.5 | 427 | 77 | 2 | 1 | 427 | 1 | 425 | 1.3e-206 | 720.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20142.t1 | G7L7C4 | 99.3 | 427 | 3 | 0 | 1 | 427 | 1 | 427 | 5.1e-249 | 869.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052637 | MS.gene20142 | 0.804089 | 2.55E-49 | -1.69E-46 |
| MS.gene057609 | MS.gene20142 | 0.806928 | 6.48E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20142.t1 | MTR_8g102190 | 99.297 | 427 | 3 | 0 | 1 | 427 | 1 | 427 | 0.0 | 882 |
| MS.gene20142.t1 | MTR_8g102190 | 99.732 | 373 | 1 | 0 | 1 | 373 | 1 | 373 | 0.0 | 768 |
| MS.gene20142.t1 | MTR_6g090130 | 85.273 | 421 | 61 | 1 | 7 | 427 | 4 | 423 | 0.0 | 765 |
| MS.gene20142.t1 | MTR_3g110395 | 81.647 | 425 | 77 | 1 | 3 | 427 | 4 | 427 | 0.0 | 742 |
| MS.gene20142.t1 | MTR_8g102190 | 99.720 | 357 | 1 | 0 | 1 | 357 | 1 | 357 | 0.0 | 735 |
| MS.gene20142.t1 | MTR_2g100710 | 76.739 | 417 | 96 | 1 | 16 | 432 | 16 | 431 | 0.0 | 670 |
| MS.gene20142.t1 | MTR_1g090300 | 71.814 | 408 | 114 | 1 | 17 | 424 | 84 | 490 | 0.0 | 629 |
| MS.gene20142.t1 | MTR_2g100710 | 78.070 | 342 | 75 | 0 | 16 | 357 | 16 | 357 | 0.0 | 561 |
| MS.gene20142.t1 | MTR_4g134290 | 55.663 | 415 | 173 | 6 | 20 | 430 | 27 | 434 | 2.60e-165 | 473 |
| MS.gene20142.t1 | MTR_8g069040 | 48.019 | 429 | 187 | 9 | 23 | 423 | 78 | 498 | 4.47e-127 | 378 |
| MS.gene20142.t1 | MTR_5g032570 | 52.273 | 352 | 159 | 4 | 78 | 427 | 162 | 506 | 9.10e-123 | 367 |
| MS.gene20142.t1 | MTR_2g100670 | 59.341 | 91 | 23 | 1 | 267 | 357 | 31 | 107 | 3.29e-27 | 112 |
| MS.gene20142.t1 | MTR_2g066850 | 74.324 | 74 | 18 | 1 | 166 | 239 | 389 | 461 | 8.91e-24 | 105 |
| MS.gene20142.t1 | MTR_4g062050 | 68.519 | 54 | 17 | 0 | 356 | 409 | 8 | 61 | 8.24e-17 | 78.6 |
| MS.gene20142.t1 | MTR_4g132700 | 26.667 | 195 | 136 | 3 | 89 | 276 | 95 | 289 | 9.73e-12 | 67.4 |
| MS.gene20142.t1 | MTR_2g025020 | 26.943 | 193 | 134 | 3 | 91 | 276 | 93 | 285 | 1.05e-11 | 67.0 |
| MS.gene20142.t1 | MTR_4g079180 | 76.316 | 38 | 9 | 0 | 372 | 409 | 56 | 93 | 1.64e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20142.t1 | AT4G26270 | 81.499 | 427 | 77 | 2 | 1 | 427 | 1 | 425 | 0.0 | 728 |
| MS.gene20142.t1 | AT5G56630 | 80.094 | 427 | 82 | 2 | 1 | 427 | 1 | 424 | 0.0 | 712 |
| MS.gene20142.t1 | AT4G29220 | 78.588 | 425 | 89 | 1 | 3 | 427 | 4 | 426 | 0.0 | 701 |
| MS.gene20142.t1 | AT4G32840 | 78.947 | 418 | 84 | 1 | 10 | 427 | 11 | 424 | 0.0 | 697 |
| MS.gene20142.t1 | AT5G61580 | 72.554 | 419 | 112 | 2 | 17 | 433 | 68 | 485 | 0.0 | 650 |
| MS.gene20142.t1 | AT5G61580 | 72.993 | 411 | 110 | 1 | 17 | 427 | 68 | 477 | 0.0 | 650 |
| MS.gene20142.t1 | AT5G47810 | 55.037 | 407 | 173 | 4 | 30 | 427 | 7 | 412 | 5.44e-162 | 464 |
| MS.gene20142.t1 | AT2G22480 | 48.387 | 434 | 185 | 9 | 23 | 427 | 87 | 510 | 1.14e-130 | 387 |
| MS.gene20142.t1 | AT4G04040 | 28.365 | 208 | 133 | 6 | 81 | 276 | 86 | 289 | 2.68e-13 | 72.4 |
| MS.gene20142.t1 | AT1G12000 | 27.094 | 203 | 141 | 3 | 81 | 276 | 85 | 287 | 4.15e-13 | 71.6 |
Find 101 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCAACACCTTCAACTTA+TGG | 0.240478 | 4.4:-3646077 | None:intergenic |
| CAATTTCAGGTTTATATAAT+AGG | 0.242241 | 4.4:+3645183 | MS.gene20142:intron |
| GCCTGGACCTTCAAGGAAAA+AGG | 0.253303 | 4.4:-3645887 | None:intergenic |
| GGTTAACGAACTCACATTAA+AGG | 0.274719 | 4.4:-3646919 | None:intergenic |
| CACAAGCAGCAGGATGCTTC+TGG | 0.291444 | 4.4:+3646018 | MS.gene20142:CDS |
| CTGGTCTCAACACCGTTATT+AGG | 0.296986 | 4.4:+3644689 | MS.gene20142:CDS |
| TCAAAGCCTAAAATTGTTAG+AGG | 0.297441 | 4.4:+3643344 | MS.gene20142:CDS |
| ACGCTTATGTATATCATTTA+CGG | 0.322834 | 4.4:-3644997 | None:intergenic |
| TTCTTCAAGATGTTGGACTA+TGG | 0.331798 | 4.4:+3646049 | MS.gene20142:CDS |
| TATGGCGTCAAGAAAGTATT+AGG | 0.339409 | 4.4:+3644739 | MS.gene20142:CDS |
| CCCTCTTGGACTATCTTTGT+TGG | 0.340897 | 4.4:-3644496 | None:intergenic |
| TGTGGACTGTTGCTTAATTC+CGG | 0.359579 | 4.4:+3645858 | MS.gene20142:CDS |
| GAGAGAAGGCTAAAAGAAAA+TGG | 0.369087 | 4.4:+3645928 | MS.gene20142:CDS |
| CTTGCTCAAAGTGCGGTTCA+TGG | 0.385338 | 4.4:+3646834 | MS.gene20142:CDS |
| GGTATAACTCTCAAATATAT+AGG | 0.386324 | 4.4:+3646654 | MS.gene20142:CDS |
| AATCAACACCTTCAACTTAT+GGG | 0.387680 | 4.4:-3646076 | None:intergenic |
| CGACGACGTACTGGTAAATC+TGG | 0.393095 | 4.4:-3643416 | None:intergenic |
| GTATGCCACCCTTGCGAATC+GGG | 0.396191 | 4.4:+3645834 | MS.gene20142:CDS |
| CCTGCTGCTTGTGCATGGAT+TGG | 0.398659 | 4.4:-3646008 | None:intergenic |
| CTTTCTTGACGCCATACATA+TGG | 0.405194 | 4.4:-3644732 | None:intergenic |
| TGGTCTCAACACCGTTATTA+GGG | 0.405636 | 4.4:+3644690 | MS.gene20142:CDS |
| TAGTTGACAGTATTCAAGAT+AGG | 0.412260 | 4.4:+3645069 | MS.gene20142:CDS |
| AACAAACTTCTTCAAGATGT+TGG | 0.415670 | 4.4:+3646042 | MS.gene20142:CDS |
| CGCCGAAAATGTATCCCTCT+TGG | 0.417477 | 4.4:-3644510 | None:intergenic |
| AACGATAGATAACGACATTC+CGG | 0.425629 | 4.4:+3645394 | MS.gene20142:CDS |
| TCAAGATAGGGGAATCAATC+AGG | 0.434104 | 4.4:+3645082 | MS.gene20142:CDS |
| GGTCTCAAGGTTGCAGTTGT+AGG | 0.434255 | 4.4:+3645362 | MS.gene20142:CDS |
| CGATGACAGTGTTCCTCAAA+AGG | 0.434629 | 4.4:+3643750 | MS.gene20142:CDS |
| TGGTAAATCTGGAATGTAAT+CGG | 0.438642 | 4.4:-3643405 | None:intergenic |
| GAAAGTGTTGAAAACGGAAT+AGG | 0.440666 | 4.4:+3645617 | MS.gene20142:CDS |
| AATACTGTCAACTATCTTAG+TGG | 0.440922 | 4.4:-3645060 | None:intergenic |
| GTTAACGAACTCACATTAAA+GGG | 0.444525 | 4.4:-3646918 | None:intergenic |
| AATAGGTGTTGTCAAGTTGA+TGG | 0.445015 | 4.4:+3645634 | MS.gene20142:CDS |
| AAAGACCGCCTGGACCTTCA+AGG | 0.445278 | 4.4:-3645894 | None:intergenic |
| TGATGTGAAGGGAGGATACA+AGG | 0.450448 | 4.4:+3644935 | MS.gene20142:intron |
| CGGCTTTGACACAGCTGTTG+AGG | 0.452847 | 4.4:+3645556 | MS.gene20142:CDS |
| TAGGTTATTGACAAGTCCTT+CGG | 0.454297 | 4.4:+3645536 | MS.gene20142:intron |
| TGGAACAGCTCTAATCATAT+AGG | 0.466766 | 4.4:-3646778 | None:intergenic |
| TTTGCTAAACAGAAGACAAT+GGG | 0.482651 | 4.4:+3646633 | MS.gene20142:CDS |
| GCGTGCCGGACCTCGTCAAA+AGG | 0.485746 | 4.4:+3644530 | MS.gene20142:CDS |
| TGTATGCCACCCTTGCGAAT+CGG | 0.486963 | 4.4:+3645833 | MS.gene20142:CDS |
| GGAGCAATGGCAGGCTACAC+TGG | 0.488276 | 4.4:+3646855 | MS.gene20142:CDS |
| AGTTGACAGTATTCAAGATA+GGG | 0.491907 | 4.4:+3645070 | MS.gene20142:CDS |
| GTTATTAGGGAGTTAGTATG+TGG | 0.496614 | 4.4:+3644703 | MS.gene20142:CDS |
| AAGCGTGGCGGAACTATCCT+TGG | 0.501773 | 4.4:+3645014 | MS.gene20142:CDS |
| AGCATCCTGCTGCTTGTGCA+TGG | 0.502680 | 4.4:-3646013 | None:intergenic |
| TGTGGTTTATACCATATGTA+TGG | 0.503323 | 4.4:+3644721 | MS.gene20142:CDS |
| CCAATCCATGCACAAGCAGC+AGG | 0.508389 | 4.4:+3646008 | MS.gene20142:CDS |
| GATTGCTGAAGGAGCAGGAC+AGG | 0.511673 | 4.4:+3645966 | MS.gene20142:CDS |
| GCGGTTCATGGAGCAATGGC+AGG | 0.512733 | 4.4:+3646846 | MS.gene20142:CDS |
| ATGGATATCCCATAAGTTGA+AGG | 0.517124 | 4.4:+3646068 | MS.gene20142:CDS |
| TTTCAGGTTTATATAATAGG+AGG | 0.517903 | 4.4:+3645186 | MS.gene20142:intron |
| ACGTTGTCAGAGGCATTGCT+TGG | 0.518024 | 4.4:-3646798 | None:intergenic |
| ATTGTGATTGCTGAAGGAGC+AGG | 0.519189 | 4.4:+3645961 | MS.gene20142:CDS |
| CACCCTTGCGAATCGGGATG+TGG | 0.541983 | 4.4:+3645840 | MS.gene20142:CDS |
| GTTTATATAATAGGAGGAGA+TGG | 0.543174 | 4.4:+3645192 | MS.gene20142:CDS |
| ACATACTAACTCCCTAATAA+CGG | 0.547174 | 4.4:-3644701 | None:intergenic |
| AGGAGGAGATGGAACTCAGA+GGG | 0.547255 | 4.4:+3645203 | MS.gene20142:CDS |
| TAAGCAGGATTGTCTTGCAA+TGG | 0.550580 | 4.4:-3643597 | None:intergenic |
| TTAGAAAACGCGTACAAACT+CGG | 0.553948 | 4.4:+3647837 | MS.gene20142:CDS |
| AAAATTGTTAGAGGCTCCGC+TGG | 0.554480 | 4.4:+3643353 | MS.gene20142:CDS |
| AATTAGAAACCGTGGTCTCA+AGG | 0.554898 | 4.4:+3645349 | MS.gene20142:CDS |
| CTAATAACGGTGTTGAGACC+AGG | 0.555952 | 4.4:-3644688 | None:intergenic |
| ACATGTGGAGGTTTATGTCC+TGG | 0.556306 | 4.4:+3644670 | MS.gene20142:CDS |
| CACATCCCGATTCGCAAGGG+TGG | 0.563937 | 4.4:-3645839 | None:intergenic |
| CTTTGACACAGCTGTTGAGG+AGG | 0.569026 | 4.4:+3645559 | MS.gene20142:CDS |
| GCCAACAAAGATAGTCCAAG+AGG | 0.569223 | 4.4:+3644495 | MS.gene20142:CDS |
| TTTACGAGTGGGCTTGTGCA+TGG | 0.573351 | 4.4:+3646879 | MS.gene20142:CDS |
| ATAGGTGTTGTCAAGTTGAT+GGG | 0.573864 | 4.4:+3645635 | MS.gene20142:CDS |
| GGAATGTAATCGGTTAAATG+AGG | 0.576489 | 4.4:-3643395 | None:intergenic |
| CAGGAAACTTACCACTGTAT+CGG | 0.579399 | 4.4:-3645658 | None:intergenic |
| AGTCCACATCCCGATTCGCA+AGG | 0.579766 | 4.4:-3645843 | None:intergenic |
| GATGTGAAGGGAGGATACAA+GGG | 0.587856 | 4.4:+3644936 | MS.gene20142:intron |
| GAAGCTGAAAGTGTTGAAAA+CGG | 0.594450 | 4.4:+3645611 | MS.gene20142:CDS |
| TACTTGACAACTGAATAAGC+AGG | 0.597335 | 4.4:-3643612 | None:intergenic |
| TACGCTTCTTGCTCAAAGTG+CGG | 0.603097 | 4.4:+3646827 | MS.gene20142:CDS |
| GCTGCCATTGTGACATGTGG+AGG | 0.605863 | 4.4:+3644658 | MS.gene20142:CDS |
| AACAGCTGTGTCAAAGCCGA+AGG | 0.608023 | 4.4:-3645552 | None:intergenic |
| GTCCACCTCGCGATGAACCA+AGG | 0.608972 | 4.4:-3645031 | None:intergenic |
| TTAAATGAGGAACATCTTCG+AGG | 0.616676 | 4.4:-3643382 | None:intergenic |
| ATGGTTATTGTGATTGCTGA+AGG | 0.618393 | 4.4:+3645955 | MS.gene20142:CDS |
| CAACTGCAACCTTGAGACCA+CGG | 0.620649 | 4.4:-3645358 | None:intergenic |
| ACAGCTCTAATCATATAGGT+AGG | 0.620671 | 4.4:-3646774 | None:intergenic |
| ACTATCCTTGGTTCATCGCG+AGG | 0.625631 | 4.4:+3645026 | MS.gene20142:CDS |
| GTCCACATCCCGATTCGCAA+GGG | 0.625633 | 4.4:-3645842 | None:intergenic |
| GTTGACAGTATTCAAGATAG+GGG | 0.630179 | 4.4:+3645071 | MS.gene20142:CDS |
| AAGTGCGGTTCATGGAGCAA+TGG | 0.631546 | 4.4:+3646842 | MS.gene20142:CDS |
| GCTAAAAGAAAATGGCCACA+TGG | 0.633855 | 4.4:+3645936 | MS.gene20142:CDS |
| AAGTTGATGGGCCGATACAG+TGG | 0.643563 | 4.4:+3645647 | MS.gene20142:CDS |
| CCAACAAAGATAGTCCAAGA+GGG | 0.648453 | 4.4:+3644496 | MS.gene20142:CDS |
| CGTACAGTACACGTTGTCAG+AGG | 0.651345 | 4.4:-3646808 | None:intergenic |
| TAAACCTCCACATGTCACAA+TGG | 0.653142 | 4.4:-3644662 | None:intergenic |
| CAGGCTGCCATTGTGACATG+TGG | 0.653226 | 4.4:+3644655 | MS.gene20142:CDS |
| ATCCTTGGTTCATCGCGAGG+TGG | 0.657168 | 4.4:+3645029 | MS.gene20142:CDS |
| TCATAGGAAATTAGAAACCG+TGG | 0.660254 | 4.4:+3645341 | MS.gene20142:intron |
| GTAAATGATATACATAAGCG+TGG | 0.691593 | 4.4:+3644999 | MS.gene20142:CDS |
| ATCTTCGAGGATATAACCAG+CGG | 0.701644 | 4.4:-3643369 | None:intergenic |
| GGAGGAGATGGAACTCAGAG+GGG | 0.709597 | 4.4:+3645204 | MS.gene20142:CDS |
| TAGGAGGAGATGGAACTCAG+AGG | 0.715955 | 4.4:+3645202 | MS.gene20142:CDS |
| CAGCAATCACAATAACCATG+TGG | 0.741689 | 4.4:-3645951 | None:intergenic |
| AATGATATACATAAGCGTGG+CGG | 0.746132 | 4.4:+3645002 | MS.gene20142:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTATTAACAAAAATAAATT+AGG | - | chr4.4:3643671-3643690 | None:intergenic | 10.0% |
| !!! | GTTATATTTTCTTTTATTTT+GGG | + | chr4.4:3643772-3643791 | MS.gene20142:intron | 10.0% |
| !!! | TTATATTTTCTTTTATTTTG+GGG | + | chr4.4:3643773-3643792 | MS.gene20142:intron | 10.0% |
| !! | AAATTCAAATGATTATCATA+CGG | - | chr4.4:3647539-3647558 | None:intergenic | 15.0% |
| !! | AATTACTATTCTTAATGATT+AGG | - | chr4.4:3643887-3643906 | None:intergenic | 15.0% |
| !!! | GGTTATATTTTCTTTTATTT+TGG | + | chr4.4:3643771-3643790 | MS.gene20142:intron | 15.0% |
| !! | AAAAAACAATTTATCCTCAT+AGG | + | chr4.4:3645325-3645344 | MS.gene20142:intron | 20.0% |
| !! | AATAATCTGTTAAACAAAGA+GGG | - | chr4.4:3644475-3644494 | None:intergenic | 20.0% |
| !! | AATTCAAATGATTATCATAC+GGG | - | chr4.4:3647538-3647557 | None:intergenic | 20.0% |
| !! | CAGTATAAAATTGTATATTC+AGG | + | chr4.4:3644609-3644628 | MS.gene20142:intron | 20.0% |
| !! | CATTTAAAAACTCATCAAAA+TGG | - | chr4.4:3646311-3646330 | None:intergenic | 20.0% |
| !! | GTAAGAATTACTAACATTAT+GGG | - | chr4.4:3646487-3646506 | None:intergenic | 20.0% |
| !! | GTTAGTAATTCTTACAAATA+AGG | + | chr4.4:3646492-3646511 | MS.gene20142:intron | 20.0% |
| !! | TAAAGAAAGCAAATAGAATA+TGG | + | chr4.4:3645754-3645773 | MS.gene20142:intron | 20.0% |
| !! | TGTAAGAATTACTAACATTA+TGG | - | chr4.4:3646488-3646507 | None:intergenic | 20.0% |
| !! | TTAAAATGTATTCATGAATG+TGG | + | chr4.4:3644129-3644148 | MS.gene20142:intron | 20.0% |
| !!! | AAAGAAAATATAACCTTTTG+AGG | - | chr4.4:3643766-3643785 | None:intergenic | 20.0% |
| !!! | CAATTTCAGGTTTATATAAT+AGG | + | chr4.4:3645183-3645202 | MS.gene20142:intron | 20.0% |
| !!! | TTTATTTTGGGGTAAATTTT+CGG | + | chr4.4:3643784-3643803 | MS.gene20142:intron | 20.0% |
| !!! | TTTTGAGGTATTAAACTTTT+AGG | + | chr4.4:3645239-3645258 | MS.gene20142:intron | 20.0% |
| ! | AAGTCATTCTAAATAGGATT+AGG | + | chr4.4:3647048-3647067 | MS.gene20142:intron | 25.0% |
| ! | ACCATGTTATATACTAATGA+AGG | - | chr4.4:3643852-3643871 | None:intergenic | 25.0% |
| ! | ACGCTTATGTATATCATTTA+CGG | - | chr4.4:3645000-3645019 | None:intergenic | 25.0% |
| ! | AGAAGATTCATTTAATCTGT+AGG | + | chr4.4:3647284-3647303 | MS.gene20142:intron | 25.0% |
| ! | ATATAAATTGGGTCAATTTC+AGG | + | chr4.4:3645170-3645189 | MS.gene20142:intron | 25.0% |
| ! | ATGTTATATACTAATGAAGG+AGG | - | chr4.4:3643849-3643868 | None:intergenic | 25.0% |
| ! | CAATAATCTGTTAAACAAAG+AGG | - | chr4.4:3644476-3644495 | None:intergenic | 25.0% |
| ! | CTATTTGCTTTCTTTAAATG+AGG | - | chr4.4:3645750-3645769 | None:intergenic | 25.0% |
| ! | GATAACAAGTCATTCTAAAT+AGG | + | chr4.4:3647042-3647061 | MS.gene20142:intron | 25.0% |
| ! | GGTATAACTCTCAAATATAT+AGG | + | chr4.4:3646654-3646673 | MS.gene20142:CDS | 25.0% |
| ! | TAAACAGATAAAATCACACA+TGG | - | chr4.4:3644563-3644582 | None:intergenic | 25.0% |
| ! | TAACTCTCAAATATATAGGT+TGG | + | chr4.4:3646658-3646677 | MS.gene20142:intron | 25.0% |
| ! | TATCTGTTCTGATAAATAGA+AGG | - | chr4.4:3645117-3645136 | None:intergenic | 25.0% |
| ! | TCCTTCATTAGTATATAACA+TGG | + | chr4.4:3643848-3643867 | MS.gene20142:intron | 25.0% |
| ! | TTACATTATTAAGTGAACCT+TGG | + | chr4.4:3647764-3647783 | MS.gene20142:intron | 25.0% |
| ! | TTATATAAGATCAGCGTAAT+TGG | - | chr4.4:3644079-3644098 | None:intergenic | 25.0% |
| !! | AATGATACATAAGATTAGCT+AGG | - | chr4.4:3643501-3643520 | None:intergenic | 25.0% |
| !! | ATGTGTGATTTTATCTGTTT+AGG | + | chr4.4:3644562-3644581 | MS.gene20142:intron | 25.0% |
| !! | CATTTTGTTAACAAAACAGT+TGG | + | chr4.4:3647327-3647346 | MS.gene20142:intron | 25.0% |
| !! | CTTTAGTACAACTTTTTGTA+AGG | - | chr4.4:3646369-3646388 | None:intergenic | 25.0% |
| !! | TCTAGAAATTTTCACGATTA+AGG | + | chr4.4:3647788-3647807 | MS.gene20142:intron | 25.0% |
| !! | TGTATATCATTTACGGTTTT+CGG | - | chr4.4:3644993-3645012 | None:intergenic | 25.0% |
| !! | TTATGTTGTAAGATCTTTTG+AGG | - | chr4.4:3644339-3644358 | None:intergenic | 25.0% |
| !! | TTTTAAATCAGATGAAGTTC+AGG | + | chr4.4:3644636-3644655 | MS.gene20142:CDS | 25.0% |
| !!! | ACAATTTTAGGCTTTGAATT+TGG | - | chr4.4:3643341-3643360 | None:intergenic | 25.0% |
| !!! | CAACTGTTTTGTTAACAAAA+TGG | - | chr4.4:3647329-3647348 | None:intergenic | 25.0% |
| !!! | GTGTTCCTTTTAATTTACTA+GGG | - | chr4.4:3645728-3645747 | None:intergenic | 25.0% |
| !!! | TGTTCCTTTTAATTTACTAG+GGG | - | chr4.4:3645727-3645746 | None:intergenic | 25.0% |
| !!! | TTTCAGGTTTATATAATAGG+AGG | + | chr4.4:3645186-3645205 | MS.gene20142:intron | 25.0% |
| AAACAAAACATGATATTGCC+AGG | + | chr4.4:3643922-3643941 | MS.gene20142:intron | 30.0% | |
| AAAGTCGTTTGTAGATGAAT+CGG | - | chr4.4:3647571-3647590 | None:intergenic | 30.0% | |
| AAATAATCCTGCTACATCAA+AGG | - | chr4.4:3646615-3646634 | None:intergenic | 30.0% | |
| AAATCAACACCTTCAACTTA+TGG | - | chr4.4:3646080-3646099 | None:intergenic | 30.0% | |
| AACAAAACATGATATTGCCA+GGG | + | chr4.4:3643923-3643942 | MS.gene20142:intron | 30.0% | |
| AACAAACTTCTTCAAGATGT+TGG | + | chr4.4:3646042-3646061 | MS.gene20142:CDS | 30.0% | |
| AATACTGTCAACTATCTTAG+TGG | - | chr4.4:3645063-3645082 | None:intergenic | 30.0% | |
| AATCAACACCTTCAACTTAT+GGG | - | chr4.4:3646079-3646098 | None:intergenic | 30.0% | |
| AATTCAATCTTTGTCCACAT+TGG | - | chr4.4:3647687-3647706 | None:intergenic | 30.0% | |
| ACATACTAACTCCCTAATAA+CGG | - | chr4.4:3644704-3644723 | None:intergenic | 30.0% | |
| AGAAGTTTCTGCATAAACAT+GGG | - | chr4.4:3643979-3643998 | None:intergenic | 30.0% | |
| AGTTAGTTATGCACAAAGTA+CGG | - | chr4.4:3644203-3644222 | None:intergenic | 30.0% | |
| AGTTGACAGTATTCAAGATA+GGG | + | chr4.4:3645070-3645089 | MS.gene20142:CDS | 30.0% | |
| ATCACTTTATAAGTAGCTTG+TGG | + | chr4.4:3646427-3646446 | MS.gene20142:intron | 30.0% | |
| ATGGACATGAATGTAATGTA+AGG | - | chr4.4:3646205-3646224 | None:intergenic | 30.0% | |
| ATTGACCCAATTTATATGTC+TGG | - | chr4.4:3645167-3645186 | None:intergenic | 30.0% | |
| CAATCCCCTAGTAAATTAAA+AGG | + | chr4.4:3645720-3645739 | MS.gene20142:intron | 30.0% | |
| CAGCGTAATTGGTATAAATT+TGG | - | chr4.4:3644068-3644087 | None:intergenic | 30.0% | |
| CATTACATTCATGTCCATTT+AGG | + | chr4.4:3646207-3646226 | MS.gene20142:intron | 30.0% | |
| CTTACAACATAACTTTGTTG+AGG | + | chr4.4:3644347-3644366 | MS.gene20142:intron | 30.0% | |
| GCATAACTAACTTCCATAAA+AGG | + | chr4.4:3644211-3644230 | MS.gene20142:intron | 30.0% | |
| GTAAATGATATACATAAGCG+TGG | + | chr4.4:3644999-3645018 | MS.gene20142:CDS | 30.0% | |
| GTCTTAGCAATCAAAAAACT+GGG | - | chr4.4:3647231-3647250 | None:intergenic | 30.0% | |
| GTTAACGAACTCACATTAAA+GGG | - | chr4.4:3646921-3646940 | None:intergenic | 30.0% | |
| GTTTATATAATAGGAGGAGA+TGG | + | chr4.4:3645192-3645211 | MS.gene20142:CDS | 30.0% | |
| GTTTGGATTTCATACAATCA+TGG | + | chr4.4:3644806-3644825 | MS.gene20142:intron | 30.0% | |
| TAGAAGTTTCTGCATAAACA+TGG | - | chr4.4:3643980-3643999 | None:intergenic | 30.0% | |
| TAGTTGACAGTATTCAAGAT+AGG | + | chr4.4:3645069-3645088 | MS.gene20142:CDS | 30.0% | |
| TATCACATTGTATACTATGC+AGG | + | chr4.4:3645138-3645157 | MS.gene20142:intron | 30.0% | |
| TCAAAGCCTAAAATTGTTAG+AGG | + | chr4.4:3643344-3643363 | MS.gene20142:CDS | 30.0% | |
| TGTGGTTTATACCATATGTA+TGG | + | chr4.4:3644721-3644740 | MS.gene20142:CDS | 30.0% | |
| TTGAAGTTAAATCTACGACT+AGG | - | chr4.4:3647621-3647640 | None:intergenic | 30.0% | |
| TTGTATGAAATCCAAACAAG+AGG | - | chr4.4:3644803-3644822 | None:intergenic | 30.0% | |
| TTTCATACAATCATGGACAT+AGG | + | chr4.4:3644813-3644832 | MS.gene20142:intron | 30.0% | |
| TTTGCTAAACAGAAGACAAT+GGG | + | chr4.4:3646633-3646652 | MS.gene20142:CDS | 30.0% | |
| TTTGTTAACAAAACAGTTGG+CGG | + | chr4.4:3647330-3647349 | MS.gene20142:intron | 30.0% | |
| ! | AAATTTTCACGATTAAGGTG+TGG | + | chr4.4:3647793-3647812 | MS.gene20142:intron | 30.0% |
| ! | AATTAACAGAGCCTAAGTTT+TGG | + | chr4.4:3645785-3645804 | MS.gene20142:intron | 30.0% |
| ! | ATGTCGTTATCTATCGTTTT+TGG | - | chr4.4:3645392-3645411 | None:intergenic | 30.0% |
| ! | ATTAACAGAGCCTAAGTTTT+GGG | + | chr4.4:3645786-3645805 | MS.gene20142:intron | 30.0% |
| ! | ATTCATTTTCTCCTCTTGTT+TGG | + | chr4.4:3644789-3644808 | MS.gene20142:intron | 30.0% |
| ! | TACATGTTTTCTGTTGTCTT+TGG | + | chr4.4:3645508-3645527 | MS.gene20142:intron | 30.0% |
| ! | TGGTAAATCTGGAATGTAAT+CGG | - | chr4.4:3643408-3643427 | None:intergenic | 30.0% |
| ! | TTTTGCTAAACAGAAGACAA+TGG | + | chr4.4:3646632-3646651 | MS.gene20142:CDS | 30.0% |
| ! | TTTTTAACCTTTGATGTAGC+AGG | + | chr4.4:3646605-3646624 | MS.gene20142:intron | 30.0% |
| ! | TTTTTGAATATACGGAGAGA+AGG | + | chr4.4:3645914-3645933 | MS.gene20142:CDS | 30.0% |
| !! | ACATTTTAAAGACCACATTG+AGG | - | chr4.4:3646128-3646147 | None:intergenic | 30.0% |
| !! | AGTATATAACTTGCTCAATG+TGG | + | chr4.4:3647640-3647659 | MS.gene20142:intron | 30.0% |
| !! | CTGTCGATTTGAAAAAAGAA+GGG | - | chr4.4:3646752-3646771 | None:intergenic | 30.0% |
| !! | TCTGTCGATTTGAAAAAAGA+AGG | - | chr4.4:3646753-3646772 | None:intergenic | 30.0% |
| !! | TGTCGTTATCTATCGTTTTT+GGG | - | chr4.4:3645391-3645410 | None:intergenic | 30.0% |
| !!! | AATTTGGTTTTTCACAGCAT+AGG | - | chr4.4:3644052-3644071 | None:intergenic | 30.0% |
| !!! | AGCATAGGTGTTGTTTTAAT+TGG | - | chr4.4:3644037-3644056 | None:intergenic | 30.0% |
| !!! | GGTGTTCCTTTTAATTTACT+AGG | - | chr4.4:3645729-3645748 | None:intergenic | 30.0% |
| !!! | TTTTTTTATTCTGTTTGCGC+CGG | + | chr4.4:3646099-3646118 | MS.gene20142:intron | 30.0% |
| AAAGGTTCTGTTAAAGTTGC+TGG | + | chr4.4:3644410-3644429 | MS.gene20142:intron | 35.0% | |
| AACGATAGATAACGACATTC+CGG | + | chr4.4:3645394-3645413 | MS.gene20142:CDS | 35.0% | |
| AATGATATACATAAGCGTGG+CGG | + | chr4.4:3645002-3645021 | MS.gene20142:CDS | 35.0% | |
| ACAAATGAAACACACCAATG+TGG | + | chr4.4:3647670-3647689 | MS.gene20142:intron | 35.0% | |
| ACCTTTCTATCAGAAAATCG+TGG | - | chr4.4:3644396-3644415 | None:intergenic | 35.0% | |
| ACGGTTTCTAATTTCCTATG+AGG | - | chr4.4:3645342-3645361 | None:intergenic | 35.0% | |
| AGGACACCAGACATATAAAT+TGG | + | chr4.4:3645158-3645177 | MS.gene20142:intron | 35.0% | |
| ATGGTTATTGTGATTGCTGA+AGG | + | chr4.4:3645955-3645974 | MS.gene20142:CDS | 35.0% | |
| ATGTTCTGTTGTGATGTGAA+GGG | + | chr4.4:3644924-3644943 | MS.gene20142:intron | 35.0% | |
| CTGCTTCTGCAAAATACATA+GGG | + | chr4.4:3646962-3646981 | MS.gene20142:intron | 35.0% | |
| CTTCCATAAAAGGAACCTAT+CGG | + | chr4.4:3644221-3644240 | MS.gene20142:intron | 35.0% | |
| GAACTGACAAATATCACTCT+AGG | - | chr4.4:3646943-3646962 | None:intergenic | 35.0% | |
| GAGAGAAGGCTAAAAGAAAA+TGG | + | chr4.4:3645928-3645947 | MS.gene20142:CDS | 35.0% | |
| GATGAACTAAACACATTAGC+CGG | - | chr4.4:3646242-3646261 | None:intergenic | 35.0% | |
| GGAATGTAATCGGTTAAATG+AGG | - | chr4.4:3643398-3643417 | None:intergenic | 35.0% | |
| GGACACCAGACATATAAATT+GGG | + | chr4.4:3645159-3645178 | MS.gene20142:intron | 35.0% | |
| GGGGAGGTAAAAATAATTAC+CGG | - | chr4.4:3645416-3645435 | None:intergenic | 35.0% | |
| GGTCTTAGCAATCAAAAAAC+TGG | - | chr4.4:3647232-3647251 | None:intergenic | 35.0% | |
| GGTTAACGAACTCACATTAA+AGG | - | chr4.4:3646922-3646941 | None:intergenic | 35.0% | |
| GTTATTAGGGAGTTAGTATG+TGG | + | chr4.4:3644703-3644722 | MS.gene20142:CDS | 35.0% | |
| GTTGACAGTATTCAAGATAG+GGG | + | chr4.4:3645071-3645090 | MS.gene20142:CDS | 35.0% | |
| TACTTGACAACTGAATAAGC+AGG | - | chr4.4:3643615-3643634 | None:intergenic | 35.0% | |
| TAGGTTATTGACAAGTCCTT+CGG | + | chr4.4:3645536-3645555 | MS.gene20142:intron | 35.0% | |
| TCAAACATGCAAACTAGCAT+AGG | - | chr4.4:3646279-3646298 | None:intergenic | 35.0% | |
| TCATAGGAAATTAGAAACCG+TGG | + | chr4.4:3645341-3645360 | MS.gene20142:intron | 35.0% | |
| TCCATTTAGGCTATGATTAC+CGG | + | chr4.4:3646220-3646239 | MS.gene20142:intron | 35.0% | |
| TCTGCTTCTGCAAAATACAT+AGG | + | chr4.4:3646961-3646980 | MS.gene20142:intron | 35.0% | |
| TTAAATGAGGAACATCTTCG+AGG | - | chr4.4:3643385-3643404 | None:intergenic | 35.0% | |
| TTAGAAAACGCGTACAAACT+CGG | + | chr4.4:3647837-3647856 | MS.gene20142:CDS | 35.0% | |
| TTCCTTCTTCTTCTCTTCAA+CGG | - | chr4.4:3647256-3647275 | None:intergenic | 35.0% | |
| TTCTTCAAGATGTTGGACTA+TGG | + | chr4.4:3646049-3646068 | MS.gene20142:CDS | 35.0% | |
| TTGTTAACAAAACAGTTGGC+GGG | + | chr4.4:3647331-3647350 | MS.gene20142:intron | 35.0% | |
| ! | ACAGCTCTAATCATATAGGT+AGG | - | chr4.4:3646777-3646796 | None:intergenic | 35.0% |
| ! | ACTTTATAAGTAGCTTGTGG+TGG | + | chr4.4:3646430-3646449 | MS.gene20142:intron | 35.0% |
| ! | AGGCGGTCTTTTTGAATATA+CGG | + | chr4.4:3645906-3645925 | MS.gene20142:CDS | 35.0% |
| ! | ATGGATATCCCATAAGTTGA+AGG | + | chr4.4:3646068-3646087 | MS.gene20142:CDS | 35.0% |
| ! | GAAGCATTTCTATCTGAACA+TGG | + | chr4.4:3646388-3646407 | MS.gene20142:intron | 35.0% |
| ! | TCCACGATTTTCTGATAGAA+AGG | + | chr4.4:3644392-3644411 | MS.gene20142:intron | 35.0% |
| ! | TCTGTTGTCTTTGGCTTAAT+AGG | + | chr4.4:3645517-3645536 | MS.gene20142:intron | 35.0% |
| ! | TGGAACAGCTCTAATCATAT+AGG | - | chr4.4:3646781-3646800 | None:intergenic | 35.0% |
| !! | AATAGGTGTTGTCAAGTTGA+TGG | + | chr4.4:3645634-3645653 | MS.gene20142:CDS | 35.0% |
| !! | ACGCGTTTTCTAATTTCTAG+AGG | - | chr4.4:3647830-3647849 | None:intergenic | 35.0% |
| !! | AGAAGAAACAGGTTTTAACC+GGG | - | chr4.4:3643475-3643494 | None:intergenic | 35.0% |
| !! | ATAGGTGTTGTCAAGTTGAT+GGG | + | chr4.4:3645635-3645654 | MS.gene20142:CDS | 35.0% |
| !! | GAAAGTGTTGAAAACGGAAT+AGG | + | chr4.4:3645617-3645636 | MS.gene20142:CDS | 35.0% |
| !! | GAAGCTGAAAGTGTTGAAAA+CGG | + | chr4.4:3645611-3645630 | MS.gene20142:CDS | 35.0% |
| !! | GAGAAGAAACAGGTTTTAAC+CGG | - | chr4.4:3643476-3643495 | None:intergenic | 35.0% |
| !! | TATGGCGTCAAGAAAGTATT+AGG | + | chr4.4:3644739-3644758 | MS.gene20142:CDS | 35.0% |
| !! | TTGAGTTGGAATCCACAAAT+AGG | - | chr4.4:3645443-3645462 | None:intergenic | 35.0% |
| AAAGACCACATTGAGGTAAC+CGG | - | chr4.4:3646121-3646140 | None:intergenic | 40.0% | |
| AATTAGAAACCGTGGTCTCA+AGG | + | chr4.4:3645349-3645368 | MS.gene20142:CDS | 40.0% | |
| AGATACGTCAGCTCAGTTAA+TGG | - | chr4.4:3643949-3643968 | None:intergenic | 40.0% | |
| AGCGTTACATTATGACTGCA+AGG | + | chr4.4:3647080-3647099 | MS.gene20142:intron | 40.0% | |
| AGTGATAACCGATCGAATGT+GGG | + | chr4.4:3647179-3647198 | MS.gene20142:intron | 40.0% | |
| ATCTTCGAGGATATAACCAG+CGG | - | chr4.4:3643372-3643391 | None:intergenic | 40.0% | |
| CAAGTTACCGTTACAACACA+AGG | - | chr4.4:3647405-3647424 | None:intergenic | 40.0% | |
| CAGCAATCACAATAACCATG+TGG | - | chr4.4:3645954-3645973 | None:intergenic | 40.0% | |
| CAGGAAACTTACCACTGTAT+CGG | - | chr4.4:3645661-3645680 | None:intergenic | 40.0% | |
| CAGGTTTGAACTGTTTGAGT+TGG | - | chr4.4:3645457-3645476 | None:intergenic | 40.0% | |
| CCAACAAAGATAGTCCAAGA+GGG | + | chr4.4:3644496-3644515 | MS.gene20142:CDS | 40.0% | |
| CTTTCTTGACGCCATACATA+TGG | - | chr4.4:3644735-3644754 | None:intergenic | 40.0% | |
| GAATCCACAAATAGGAAGAG+GGG | - | chr4.4:3645435-3645454 | None:intergenic | 40.0% | |
| GACATCTTATGGATGTGGAA+AGG | - | chr4.4:3647461-3647480 | None:intergenic | 40.0% | |
| GATATGCACGAAATATTGCC+TGG | - | chr4.4:3643731-3643750 | None:intergenic | 40.0% | |
| GATGTTCTGTTGTGATGTGA+AGG | + | chr4.4:3644923-3644942 | MS.gene20142:intron | 40.0% | |
| GCTAAAAGAAAATGGCCACA+TGG | + | chr4.4:3645936-3645955 | MS.gene20142:CDS | 40.0% | |
| GGAATCCACAAATAGGAAGA+GGG | - | chr4.4:3645436-3645455 | None:intergenic | 40.0% | |
| GTATATTCAAAAAGACCGCC+TGG | - | chr4.4:3645907-3645926 | None:intergenic | 40.0% | |
| GTCGTAAAATAAGCACACGA+AGG | - | chr4.4:3644590-3644609 | None:intergenic | 40.0% | |
| TAAACCTCCACATGTCACAA+TGG | - | chr4.4:3644665-3644684 | None:intergenic | 40.0% | |
| TAAGCAGGATTGTCTTGCAA+TGG | - | chr4.4:3643600-3643619 | None:intergenic | 40.0% | |
| TACAAGTCAACCATGCTAAC+TGG | - | chr4.4:3645490-3645509 | None:intergenic | 40.0% | |
| TAGCTAGGTAGAGAAGAAAC+AGG | - | chr4.4:3643486-3643505 | None:intergenic | 40.0% | |
| TAGTGATAACCGATCGAATG+TGG | + | chr4.4:3647178-3647197 | MS.gene20142:intron | 40.0% | |
| TATAGACGTGTCTACTTGCT+TGG | - | chr4.4:3647730-3647749 | None:intergenic | 40.0% | |
| TCAAGATAGGGGAATCAATC+AGG | + | chr4.4:3645082-3645101 | MS.gene20142:CDS | 40.0% | |
| TCTGCATAAACATGGGATTG+TGG | - | chr4.4:3643972-3643991 | None:intergenic | 40.0% | |
| TGGAATCCACAAATAGGAAG+AGG | - | chr4.4:3645437-3645456 | None:intergenic | 40.0% | |
| TGGTCTCAACACCGTTATTA+GGG | + | chr4.4:3644690-3644709 | MS.gene20142:CDS | 40.0% | |
| TTTCCTACTACCAGTTAGCA+TGG | + | chr4.4:3645477-3645496 | MS.gene20142:intron | 40.0% | |
| ! | AAAAGGAACCTATCGGCTAT+CGG | + | chr4.4:3644228-3644247 | MS.gene20142:intron | 40.0% |
| ! | GACAATGCAAGTTGAAACAG+CGG | + | chr4.4:3644369-3644388 | MS.gene20142:intron | 40.0% |
| ! | GGGCGCTTATAGAATTTTTG+AGG | + | chr4.4:3645224-3645243 | MS.gene20142:CDS | 40.0% |
| ! | GTCCAAGAGGGATACATTTT+CGG | + | chr4.4:3644508-3644527 | MS.gene20142:CDS | 40.0% |
| ! | TAGCCGATAGGTTCCTTTTA+TGG | - | chr4.4:3644227-3644246 | None:intergenic | 40.0% |
| ! | TGTGGACTGTTGCTTAATTC+CGG | + | chr4.4:3645858-3645877 | MS.gene20142:CDS | 40.0% |
| ! | TTGTGGTGGAAACATGATCA+CGG | + | chr4.4:3646444-3646463 | MS.gene20142:intron | 40.0% |
| !! | CGTGAAAATTTCTAGAGCCA+AGG | - | chr4.4:3647784-3647803 | None:intergenic | 40.0% |
| AAAATTGTTAGAGGCTCCGC+TGG | + | chr4.4:3643353-3643372 | MS.gene20142:CDS | 45.0% | |
| ACATGCAAACTAGCATAGGC+AGG | - | chr4.4:3646275-3646294 | None:intergenic | 45.0% | |
| ACATGTGGAGGTTTATGTCC+TGG | + | chr4.4:3644670-3644689 | MS.gene20142:CDS | 45.0% | |
| ACGAAATATTGCCTGGCAAG+AGG | - | chr4.4:3643724-3643743 | None:intergenic | 45.0% | |
| ATCTACGACTAGGTCAGTCA+TGG | - | chr4.4:3647611-3647630 | None:intergenic | 45.0% | |
| ATGCAAACTAGCATAGGCAG+GGG | - | chr4.4:3646273-3646292 | None:intergenic | 45.0% | |
| ATTGTGATTGCTGAAGGAGC+AGG | + | chr4.4:3645961-3645980 | MS.gene20142:CDS | 45.0% | |
| CAACCATGCTAACTGGTAGT+AGG | - | chr4.4:3645483-3645502 | None:intergenic | 45.0% | |
| CAACGTTCTTCGGCTGATAA+AGG | + | chr4.4:3644157-3644176 | MS.gene20142:intron | 45.0% | |
| CAAGGTCGAGGCTAAAATGA+TGG | - | chr4.4:3647387-3647406 | None:intergenic | 45.0% | |
| CATGCAAACTAGCATAGGCA+GGG | - | chr4.4:3646274-3646293 | None:intergenic | 45.0% | |
| CCCTCTTGGACTATCTTTGT+TGG | - | chr4.4:3644499-3644518 | None:intergenic | 45.0% | |
| CCTGGACCTTCAAGGAAAAA+GGG | - | chr4.4:3645889-3645908 | None:intergenic | 45.0% | |
| CGAAATATTGCCTGGCAAGA+GGG | - | chr4.4:3643723-3643742 | None:intergenic | 45.0% | |
| CGATGACAGTGTTCCTCAAA+AGG | + | chr4.4:3643750-3643769 | MS.gene20142:CDS | 45.0% | |
| CTGGTCTCAACACCGTTATT+AGG | + | chr4.4:3644689-3644708 | MS.gene20142:CDS | 45.0% | |
| CTTCTTCTTCTCTTCAACGG+CGG | - | chr4.4:3647253-3647272 | None:intergenic | 45.0% | |
| CTTTATCAGCCGAAGAACGT+TGG | - | chr4.4:3644159-3644178 | None:intergenic | 45.0% | |
| GAATTAGAACGACGACGTAC+TGG | - | chr4.4:3643428-3643447 | None:intergenic | 45.0% | |
| GATGTGAAGGGAGGATACAA+GGG | + | chr4.4:3644936-3644955 | MS.gene20142:intron | 45.0% | |
| GCCAACAAAGATAGTCCAAG+AGG | + | chr4.4:3644495-3644514 | MS.gene20142:CDS | 45.0% | |
| GCCGGTAATCATAGCCTAAA+TGG | - | chr4.4:3646224-3646243 | None:intergenic | 45.0% | |
| GCTAACTGGTAGTAGGAAAC+AGG | - | chr4.4:3645476-3645495 | None:intergenic | 45.0% | |
| GTGGTGCAGAGAATCAATGA+AGG | + | chr4.4:3647144-3647163 | MS.gene20142:intron | 45.0% | |
| TACGCTTCTTGCTCAAAGTG+CGG | + | chr4.4:3646827-3646846 | MS.gene20142:CDS | 45.0% | |
| TGATGTGAAGGGAGGATACA+AGG | + | chr4.4:3644935-3644954 | MS.gene20142:intron | 45.0% | |
| TGTGGCAAACCAACGTTCTT+CGG | + | chr4.4:3644147-3644166 | MS.gene20142:intron | 45.0% | |
| TTAATTTCCTCCCTCTTGCC+AGG | + | chr4.4:3643710-3643729 | MS.gene20142:intron | 45.0% | |
| TTCTGTTGTGATGTGAAGGG+AGG | + | chr4.4:3644927-3644946 | MS.gene20142:intron | 45.0% | |
| ! | CTAATAACGGTGTTGAGACC+AGG | - | chr4.4:3644691-3644710 | None:intergenic | 45.0% |
| ! | GAGACACCCTTTTTCCTTGA+AGG | + | chr4.4:3645880-3645899 | MS.gene20142:CDS | 45.0% |
| ! | GCGGAGCCTCTAACAATTTT+AGG | - | chr4.4:3643353-3643372 | None:intergenic | 45.0% |
| ! | GTAGTCTTGCTCAACTCTCT+CGG | + | chr4.4:3647107-3647126 | MS.gene20142:intron | 45.0% |
| ! | TAGTCTTGCTCAACTCTCTC+GGG | + | chr4.4:3647108-3647127 | MS.gene20142:intron | 45.0% |
| ! | TGATCACGGTTGATGTTGAC+AGG | + | chr4.4:3646458-3646477 | MS.gene20142:intron | 45.0% |
| ! | TTTTTCCTTGAAGGTCCAGG+CGG | + | chr4.4:3645889-3645908 | MS.gene20142:CDS | 45.0% |
| !! | TCAAGGAAAAAGGGTGTCTC+CGG | - | chr4.4:3645880-3645899 | None:intergenic | 45.0% |
| !! | TGGAGGCATTACAAGCAATC+AGG | - | chr4.4:3645680-3645699 | None:intergenic | 45.0% |
| !!! | GCTACACTGGTTTTACGAGT+GGG | + | chr4.4:3646868-3646887 | MS.gene20142:CDS | 45.0% |
| AACAGCTGTGTCAAAGCCGA+AGG | - | chr4.4:3645555-3645574 | None:intergenic | 50.0% | |
| AAGCCTAGCCCACATTCGAT+CGG | - | chr4.4:3647190-3647209 | None:intergenic | 50.0% | |
| AAGTGCGGTTCATGGAGCAA+TGG | + | chr4.4:3646842-3646861 | MS.gene20142:CDS | 50.0% | |
| AATATTGCCTGGCAAGAGGG+AGG | - | chr4.4:3643720-3643739 | None:intergenic | 50.0% | |
| ACCGTTACAACACAAGGTCG+AGG | - | chr4.4:3647399-3647418 | None:intergenic | 50.0% | |
| ACCTCCCCTCTTCCTATTTG+TGG | + | chr4.4:3645428-3645447 | MS.gene20142:intron | 50.0% | |
| ACTATCCTTGGTTCATCGCG+AGG | + | chr4.4:3645026-3645045 | MS.gene20142:CDS | 50.0% | |
| AGCTCTCCACGGACATCTTA+TGG | - | chr4.4:3647472-3647491 | None:intergenic | 50.0% | |
| AGGAGGAGATGGAACTCAGA+GGG | + | chr4.4:3645203-3645222 | MS.gene20142:CDS | 50.0% | |
| ATGTAGAGCTGAGCTCTCCA+CGG | - | chr4.4:3647483-3647502 | None:intergenic | 50.0% | |
| CAACTGCAACCTTGAGACCA+CGG | - | chr4.4:3645361-3645380 | None:intergenic | 50.0% | |
| CCACATCCATAAGATGTCCG+TGG | + | chr4.4:3647463-3647482 | MS.gene20142:intron | 50.0% | |
| CCACGGACATCTTATGGATG+TGG | - | chr4.4:3647466-3647485 | None:intergenic | 50.0% | |
| CGCCGAAAATGTATCCCTCT+TGG | - | chr4.4:3644513-3644532 | None:intergenic | 50.0% | |
| CGCCGTTGAAGAGAAGAAGA+AGG | + | chr4.4:3647251-3647270 | MS.gene20142:intron | 50.0% | |
| CGTACAGTACACGTTGTCAG+AGG | - | chr4.4:3646811-3646830 | None:intergenic | 50.0% | |
| CTTGCTCAAAGTGCGGTTCA+TGG | + | chr4.4:3646834-3646853 | MS.gene20142:CDS | 50.0% | |
| CTTTGACACAGCTGTTGAGG+AGG | + | chr4.4:3645559-3645578 | MS.gene20142:CDS | 50.0% | |
| GCCTCGACCTTGTGTTGTAA+CGG | + | chr4.4:3647395-3647414 | MS.gene20142:intron | 50.0% | |
| GCCTGGACCTTCAAGGAAAA+AGG | - | chr4.4:3645890-3645909 | None:intergenic | 50.0% | |
| GGTCTCAAGGTTGCAGTTGT+AGG | + | chr4.4:3645362-3645381 | MS.gene20142:CDS | 50.0% | |
| TAACCGATCGAATGTGGGCT+AGG | + | chr4.4:3647184-3647203 | MS.gene20142:intron | 50.0% | |
| TAGGAGGAGATGGAACTCAG+AGG | + | chr4.4:3645202-3645221 | MS.gene20142:CDS | 50.0% | |
| TCCACAAATAGGAAGAGGGG+AGG | - | chr4.4:3645432-3645451 | None:intergenic | 50.0% | |
| TGTATGCCACCCTTGCGAAT+CGG | + | chr4.4:3645833-3645852 | MS.gene20142:CDS | 50.0% | |
| TTGAAGCACGCGAAGCTGAT+AGG | - | chr4.4:3645703-3645722 | None:intergenic | 50.0% | |
| ! | CCATGCTTTTCTCTTACGCC+CGG | + | chr4.4:3643454-3643473 | MS.gene20142:intron | 50.0% |
| ! | CCCTTTTTCCTTGAAGGTCC+AGG | + | chr4.4:3645886-3645905 | MS.gene20142:CDS | 50.0% |
| ! | CGACGACGTACTGGTAAATC+TGG | - | chr4.4:3643419-3643438 | None:intergenic | 50.0% |
| ! | TGGAACCACACCTTTTGACG+AGG | - | chr4.4:3644543-3644562 | None:intergenic | 50.0% |
| ! | TTTACGAGTGGGCTTGTGCA+TGG | + | chr4.4:3646879-3646898 | MS.gene20142:CDS | 50.0% |
| !! | AAGTTGATGGGCCGATACAG+TGG | + | chr4.4:3645647-3645666 | MS.gene20142:CDS | 50.0% |
| !! | ACGTTGTCAGAGGCATTGCT+TGG | - | chr4.4:3646801-3646820 | None:intergenic | 50.0% |
| !!! | GGCTACACTGGTTTTACGAG+TGG | + | chr4.4:3646867-3646886 | MS.gene20142:CDS | 50.0% |
| AAAGACCGCCTGGACCTTCA+AGG | - | chr4.4:3645897-3645916 | None:intergenic | 55.0% | |
| AAGCACGCGAAGCTGATAGG+TGG | - | chr4.4:3645700-3645719 | None:intergenic | 55.0% | |
| ATCCTTGGTTCATCGCGAGG+TGG | + | chr4.4:3645029-3645048 | MS.gene20142:CDS | 55.0% | |
| CACAAGCAGCAGGATGCTTC+TGG | + | chr4.4:3646018-3646037 | MS.gene20142:CDS | 55.0% | |
| CAGGCTGCCATTGTGACATG+TGG | + | chr4.4:3644655-3644674 | MS.gene20142:CDS | 55.0% | |
| CCAATCCATGCACAAGCAGC+AGG | + | chr4.4:3646008-3646027 | MS.gene20142:CDS | 55.0% | |
| CCGGGCGTAAGAGAAAAGCA+TGG | - | chr4.4:3643457-3643476 | None:intergenic | 55.0% | |
| CTAGCATAGGCAGGGGAAGT+AGG | - | chr4.4:3646266-3646285 | None:intergenic | 55.0% | |
| GATTGCTGAAGGAGCAGGAC+AGG | + | chr4.4:3645966-3645985 | MS.gene20142:CDS | 55.0% | |
| GCACCATGCGCCCAAAACTT+AGG | - | chr4.4:3645799-3645818 | None:intergenic | 55.0% | |
| GCTGCCATTGTGACATGTGG+AGG | + | chr4.4:3644658-3644677 | MS.gene20142:CDS | 55.0% | |
| GGAGGAGATGGAACTCAGAG+GGG | + | chr4.4:3645204-3645223 | MS.gene20142:CDS | 55.0% | |
| GTATGCCACCCTTGCGAATC+GGG | + | chr4.4:3645834-3645853 | MS.gene20142:CDS | 55.0% | |
| GTCAGCTCAGTTAATGGCCC+TGG | - | chr4.4:3643943-3643962 | None:intergenic | 55.0% | |
| GTTTCCGTCCGATAGCCGAT+AGG | - | chr4.4:3644239-3644258 | None:intergenic | 55.0% | |
| TGCTCAACTCTCTCGGGTGT+TGG | + | chr4.4:3647114-3647133 | MS.gene20142:intron | 55.0% | |
| ! | AAGCGTGGCGGAACTATCCT+TGG | + | chr4.4:3645014-3645033 | MS.gene20142:CDS | 55.0% |
| ! | AGCATCCTGCTGCTTGTGCA+TGG | - | chr4.4:3646016-3646035 | None:intergenic | 55.0% |
| ! | AGTCCACATCCCGATTCGCA+AGG | - | chr4.4:3645846-3645865 | None:intergenic | 55.0% |
| ! | CCACACCTTTTGACGAGGTC+CGG | - | chr4.4:3644538-3644557 | None:intergenic | 55.0% |
| ! | CCTGCTGCTTGTGCATGGAT+TGG | - | chr4.4:3646011-3646030 | None:intergenic | 55.0% |
| ! | CGGCTTTGACACAGCTGTTG+AGG | + | chr4.4:3645556-3645575 | MS.gene20142:CDS | 55.0% |
| ! | GGAACCTATCGGCTATCGGA+CGG | + | chr4.4:3644232-3644251 | MS.gene20142:intron | 55.0% |
| ! | GGGATACATTTTCGGCGTGC+CGG | + | chr4.4:3644516-3644535 | MS.gene20142:CDS | 55.0% |
| ! | GTCCACATCCCGATTCGCAA+GGG | - | chr4.4:3645845-3645864 | None:intergenic | 55.0% |
| !! | CTCGGGTGTTGGTTGCTTTG+TGG | + | chr4.4:3647125-3647144 | MS.gene20142:intron | 55.0% |
| !! | TTGCGCCGGTTACCTCAATG+TGG | + | chr4.4:3646113-3646132 | MS.gene20142:intron | 55.0% |
| !!! | AAGTTTTGGGCGCATGGTGC+AGG | + | chr4.4:3645799-3645818 | MS.gene20142:intron | 55.0% |
| !!! | GAGCCTAAGTTTTGGGCGCA+TGG | + | chr4.4:3645793-3645812 | MS.gene20142:intron | 55.0% |
| CACCCTTGCGAATCGGGATG+TGG | + | chr4.4:3645840-3645859 | MS.gene20142:CDS | 60.0% | |
| CACGCGAAGCTGATAGGTGG+AGG | - | chr4.4:3645697-3645716 | None:intergenic | 60.0% | |
| CCGGACCTCGTCAAAAGGTG+TGG | + | chr4.4:3644535-3644554 | MS.gene20142:intron | 60.0% | |
| GCGGTTCATGGAGCAATGGC+AGG | + | chr4.4:3646846-3646865 | MS.gene20142:CDS | 60.0% | |
| GGAGCAATGGCAGGCTACAC+TGG | + | chr4.4:3646855-3646874 | MS.gene20142:CDS | 60.0% | |
| GTCCACCTCGCGATGAACCA+AGG | - | chr4.4:3645034-3645053 | None:intergenic | 60.0% | |
| ! | CACATCCCGATTCGCAAGGG+TGG | - | chr4.4:3645842-3645861 | None:intergenic | 60.0% |
| GCGTGCCGGACCTCGTCAAA+AGG | + | chr4.4:3644530-3644549 | MS.gene20142:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 3643326 | 3647869 | 3643326 | ID=MS.gene20142 |
| chr4.4 | mRNA | 3643326 | 3647869 | 3643326 | ID=MS.gene20142.t1;Parent=MS.gene20142 |
| chr4.4 | exon | 3643326 | 3643427 | 3643326 | ID=MS.gene20142.t1.exon1;Parent=MS.gene20142.t1 |
| chr4.4 | CDS | 3643326 | 3643427 | 3643326 | ID=cds.MS.gene20142.t1;Parent=MS.gene20142.t1 |
| chr4.4 | exon | 3643585 | 3643631 | 3643585 | ID=MS.gene20142.t1.exon2;Parent=MS.gene20142.t1 |
| chr4.4 | CDS | 3643585 | 3643631 | 3643585 | ID=cds.MS.gene20142.t1;Parent=MS.gene20142.t1 |
| chr4.4 | exon | 3643732 | 3643771 | 3643732 | ID=MS.gene20142.t1.exon3;Parent=MS.gene20142.t1 |
| chr4.4 | CDS | 3643732 | 3643771 | 3643732 | ID=cds.MS.gene20142.t1;Parent=MS.gene20142.t1 |
| chr4.4 | exon | 3644489 | 3644551 | 3644489 | ID=MS.gene20142.t1.exon4;Parent=MS.gene20142.t1 |
| chr4.4 | CDS | 3644489 | 3644551 | 3644489 | ID=cds.MS.gene20142.t1;Parent=MS.gene20142.t1 |
| chr4.4 | exon | 3644631 | 3644768 | 3644631 | ID=MS.gene20142.t1.exon5;Parent=MS.gene20142.t1 |
| chr4.4 | CDS | 3644631 | 3644768 | 3644631 | ID=cds.MS.gene20142.t1;Parent=MS.gene20142.t1 |
| chr4.4 | exon | 3644945 | 3645103 | 3644945 | ID=MS.gene20142.t1.exon6;Parent=MS.gene20142.t1 |
| chr4.4 | CDS | 3644945 | 3645103 | 3644945 | ID=cds.MS.gene20142.t1;Parent=MS.gene20142.t1 |
| chr4.4 | exon | 3645192 | 3645245 | 3645192 | ID=MS.gene20142.t1.exon7;Parent=MS.gene20142.t1 |
| chr4.4 | CDS | 3645192 | 3645245 | 3645192 | ID=cds.MS.gene20142.t1;Parent=MS.gene20142.t1 |
| chr4.4 | exon | 3645347 | 3645415 | 3645347 | ID=MS.gene20142.t1.exon8;Parent=MS.gene20142.t1 |
| chr4.4 | CDS | 3645347 | 3645415 | 3645347 | ID=cds.MS.gene20142.t1;Parent=MS.gene20142.t1 |
| chr4.4 | exon | 3645539 | 3645668 | 3645539 | ID=MS.gene20142.t1.exon9;Parent=MS.gene20142.t1 |
| chr4.4 | CDS | 3645539 | 3645668 | 3645539 | ID=cds.MS.gene20142.t1;Parent=MS.gene20142.t1 |
| chr4.4 | exon | 3645821 | 3646089 | 3645821 | ID=MS.gene20142.t1.exon10;Parent=MS.gene20142.t1 |
| chr4.4 | CDS | 3645821 | 3646089 | 3645821 | ID=cds.MS.gene20142.t1;Parent=MS.gene20142.t1 |
| chr4.4 | exon | 3646627 | 3646675 | 3646627 | ID=MS.gene20142.t1.exon11;Parent=MS.gene20142.t1 |
| chr4.4 | CDS | 3646627 | 3646675 | 3646627 | ID=cds.MS.gene20142.t1;Parent=MS.gene20142.t1 |
| chr4.4 | exon | 3646772 | 3646926 | 3646772 | ID=MS.gene20142.t1.exon12;Parent=MS.gene20142.t1 |
| chr4.4 | CDS | 3646772 | 3646926 | 3646772 | ID=cds.MS.gene20142.t1;Parent=MS.gene20142.t1 |
| chr4.4 | exon | 3647834 | 3647869 | 3647834 | ID=MS.gene20142.t1.exon13;Parent=MS.gene20142.t1 |
| chr4.4 | CDS | 3647834 | 3647869 | 3647834 | ID=cds.MS.gene20142.t1;Parent=MS.gene20142.t1 |
| Gene Sequence |
| Protein sequence |
