Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20186.t1 | XP_003630601.2 | 93.2 | 441 | 23 | 3 | 3 | 443 | 2 | 435 | 7.00E-236 | 826.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20186.t1 | B0SC03 | 28.7 | 296 | 164 | 5 | 137 | 432 | 3 | 251 | 4.6e-18 | 94.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20186.t1 | G7LIU9 | 93.2 | 441 | 23 | 3 | 3 | 443 | 2 | 435 | 5.1e-236 | 826.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055816 | MS.gene20186 | -0.821764 | 3.39E-53 | -1.69E-46 |
| MS.gene060084 | MS.gene20186 | 0.812258 | 4.64E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20186.t1 | MTR_8g101250 | 93.424 | 441 | 22 | 3 | 3 | 443 | 2 | 435 | 0.0 | 828 |
| MS.gene20186.t1 | MTR_8g101250 | 91.420 | 338 | 21 | 4 | 1 | 338 | 1 | 330 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20186.t1 | AT5G35400 | 59.524 | 420 | 138 | 5 | 47 | 440 | 6 | 419 | 1.46e-162 | 465 |
| MS.gene20186.t1 | AT5G35400 | 53.291 | 471 | 137 | 7 | 47 | 440 | 6 | 470 | 4.54e-152 | 440 |
Find 100 sgRNAs with CRISPR-Local
Find 384 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGTATTATCCGAAATTTC+TGG | 0.186778 | 4.4:+4158447 | None:intergenic |
| TAAAAGTTACTCACAGTTAT+AGG | 0.196185 | 4.4:+4156231 | None:intergenic |
| ATTGCATCTTCAATTTCTTT+TGG | 0.271658 | 4.4:+4157101 | None:intergenic |
| ACTCACAGTTATAGGCAATT+TGG | 0.278122 | 4.4:+4156239 | None:intergenic |
| AGCGTTCCATCTAGCGTATT+TGG | 0.282194 | 4.4:+4158773 | None:intergenic |
| TGATGCCTTGTTAAAGCTTA+TGG | 0.285310 | 4.4:-4153722 | MS.gene20186:CDS |
| TTCTGGAGTTCCAGAAATTT+CGG | 0.304510 | 4.4:-4158457 | MS.gene20186:CDS |
| CCACTTCCCACTGCGATCTT+TGG | 0.311147 | 4.4:+4158404 | None:intergenic |
| CTGTGACATTGCTAGGAAAA+TGG | 0.311452 | 4.4:-4154447 | MS.gene20186:intron |
| GTATGCATTATTCTTCTATT+AGG | 0.312426 | 4.4:-4158941 | MS.gene20186:CDS |
| GAAGGTTGTGCTGCTGTTGC+TGG | 0.345856 | 4.4:-4158131 | MS.gene20186:CDS |
| CTTTGAACAGTATTCAAGTT+TGG | 0.352375 | 4.4:+4158315 | None:intergenic |
| CCAAAGATCGCAGTGGGAAG+TGG | 0.368735 | 4.4:-4158404 | MS.gene20186:CDS |
| GTGACCGTGATGAAGGATAA+AGG | 0.378057 | 4.4:+4158871 | None:intergenic |
| ATCCCTCCAAATACGCTAGA+TGG | 0.395430 | 4.4:-4158779 | MS.gene20186:CDS |
| AGCACCAAAGTGGCGGCAAT+GGG | 0.403358 | 4.4:-4156801 | MS.gene20186:CDS |
| CGGTGAGTGGGAAAATATAA+AGG | 0.408298 | 4.4:+4156836 | None:intergenic |
| TTAGGGTTTCGACCTGAGAT+TGG | 0.418494 | 4.4:+4158579 | None:intergenic |
| AATTCATGTACGCAAGGCCT+TGG | 0.418528 | 4.4:-4158664 | MS.gene20186:CDS |
| TATTAGGAAGCACATGTTGA+TGG | 0.419877 | 4.4:-4158925 | MS.gene20186:CDS |
| GTTGCTGGTCGAACAGATAA+AGG | 0.423976 | 4.4:-4158116 | MS.gene20186:CDS |
| CTCCATTTGGCAGAGAAGTT+CGG | 0.434689 | 4.4:+4156865 | None:intergenic |
| ATCAAAAGAAGCACCGTGAT+AGG | 0.436450 | 4.4:+4158353 | None:intergenic |
| ATCCGAACTTCTCTGCCAAA+TGG | 0.439098 | 4.4:-4156867 | MS.gene20186:CDS |
| TCAACTAGACATAGGCCATC+AGG | 0.443873 | 4.4:+4153661 | None:intergenic |
| ACTCCCCATTGCCGCCACTT+TGG | 0.457889 | 4.4:+4156797 | None:intergenic |
| CAACGCCGTGACCGTGATGA+AGG | 0.459020 | 4.4:+4158864 | None:intergenic |
| AAGCACCAAAGTGGCGGCAA+TGG | 0.461294 | 4.4:-4156802 | MS.gene20186:CDS |
| ATAAAGGTAACGCCTCCATT+TGG | 0.471217 | 4.4:+4156852 | None:intergenic |
| GCAATAAATGACGCAGCACC+AGG | 0.471729 | 4.4:-4157083 | MS.gene20186:CDS |
| TGGTTATGCAGAATTTGAAC+GGG | 0.476034 | 4.4:-4153635 | MS.gene20186:CDS |
| ATCTAGCGTATTTGGAGGGA+TGG | 0.476956 | 4.4:+4158781 | None:intergenic |
| CGTATTTGGAGGGATGGGTA+TGG | 0.479472 | 4.4:+4158787 | None:intergenic |
| GATGACTATCTCTTTCACTT+TGG | 0.481377 | 4.4:+4158823 | None:intergenic |
| TGTGATTCTGACAGCAAGGA+TGG | 0.483744 | 4.4:-4156745 | MS.gene20186:CDS |
| AAAATTCTTCTTTCCTATCA+CGG | 0.483958 | 4.4:-4158366 | MS.gene20186:CDS |
| TTTCCCACTCACCGATGGAC+AGG | 0.493266 | 4.4:-4156827 | MS.gene20186:CDS |
| GAGGGTTGTATCTGTATATG+AGG | 0.496978 | 4.4:-4157054 | MS.gene20186:intron |
| GGCAGAGAAGTTCGGATGAA+AGG | 0.497782 | 4.4:+4156873 | None:intergenic |
| AATCATATGTGTTCAGCGTA+AGG | 0.506719 | 4.4:-4156705 | MS.gene20186:CDS |
| CAACTAGACATAGGCCATCA+GGG | 0.514616 | 4.4:+4153662 | None:intergenic |
| TGACCGTGATGAAGGATAAA+GGG | 0.517542 | 4.4:+4158872 | None:intergenic |
| TCAGCGTAAGGAAGGTGAAC+CGG | 0.519816 | 4.4:-4156693 | MS.gene20186:CDS |
| GGCCTATGTCTAGTTGATGT+TGG | 0.520883 | 4.4:-4153655 | MS.gene20186:CDS |
| GTTCATTATGCACAGACACT+TGG | 0.523107 | 4.4:-4157139 | MS.gene20186:intron |
| ATCACGGGCAAACATCTTGT+AGG | 0.529576 | 4.4:+4156639 | None:intergenic |
| GGCTGCAGCTTCTCTAATTG+TGG | 0.529621 | 4.4:+4153756 | None:intergenic |
| CGCAGCACCAGGAAAATTGA+GGG | 0.529621 | 4.4:-4157072 | MS.gene20186:CDS |
| TGTTCACCATGCTCGAGCTA+TGG | 0.531630 | 4.4:-4156265 | MS.gene20186:CDS |
| AAAAGAACAAACTTGTTGAA+GGG | 0.533238 | 4.4:+4158085 | None:intergenic |
| ATTAGGAAGCACATGTTGAT+GGG | 0.533644 | 4.4:-4158924 | MS.gene20186:CDS |
| TTGGTTATGCAGAATTTGAA+CGG | 0.537032 | 4.4:-4153636 | MS.gene20186:CDS |
| TTTATCCTTCATCACGGTCA+CGG | 0.537752 | 4.4:-4158869 | MS.gene20186:CDS |
| ACGCAGCACCAGGAAAATTG+AGG | 0.539830 | 4.4:-4157073 | MS.gene20186:CDS |
| AAACAAAACTCAACTGCTCA+AGG | 0.552362 | 4.4:-4158171 | MS.gene20186:CDS |
| ATGCACAGACACTTGGAAGA+AGG | 0.552624 | 4.4:-4157132 | MS.gene20186:intron |
| TTGGTGCTTATCCTGTCCAT+CGG | 0.554439 | 4.4:+4156816 | None:intergenic |
| GACAAAGGTTTGCCTATCGA+AGG | 0.558005 | 4.4:-4158149 | MS.gene20186:CDS |
| CAAAGATCGCAGTGGGAAGT+GGG | 0.569166 | 4.4:-4158403 | MS.gene20186:CDS |
| AAATCATTGACTCGTTGCCA+AGG | 0.574577 | 4.4:+4158647 | None:intergenic |
| CAAGGCATCATCTTCAGCAC+CGG | 0.575344 | 4.4:+4153735 | None:intergenic |
| ACCTGAGATTGGAAAAGAAG+AGG | 0.581836 | 4.4:+4158590 | None:intergenic |
| TGGCTTCCATAGCTCGAGCA+TGG | 0.584068 | 4.4:+4156259 | None:intergenic |
| GTTCCATCTAGCGTATTTGG+AGG | 0.584981 | 4.4:+4158776 | None:intergenic |
| GTGATTCTGACAGCAAGGAT+GGG | 0.588694 | 4.4:-4156744 | MS.gene20186:CDS |
| GCAGATGGTTAGAGTGCTTG+TGG | 0.588706 | 4.4:-4153782 | MS.gene20186:intron |
| TATCCTGTCCATCGGTGAGT+GGG | 0.593687 | 4.4:+4156824 | None:intergenic |
| ATATGTGTTCAGCGTAAGGA+AGG | 0.595166 | 4.4:-4156701 | MS.gene20186:CDS |
| TTCCATCTAGCGTATTTGGA+GGG | 0.595576 | 4.4:+4158777 | None:intergenic |
| ACAATTAGAGAAGCTGCAGC+CGG | 0.599406 | 4.4:-4153754 | MS.gene20186:CDS |
| ACGGCGTTGTAATTATTCGA+TGG | 0.601058 | 4.4:-4158850 | MS.gene20186:CDS |
| CGAACTTCTCTGCCAAATGG+AGG | 0.604545 | 4.4:-4156864 | MS.gene20186:CDS |
| TTTCCCTTTATCCTTCATCA+CGG | 0.605108 | 4.4:-4158875 | MS.gene20186:CDS |
| GAGGCAAAGAGAAGTTGCCA+CGG | 0.605797 | 4.4:+4158609 | None:intergenic |
| TTATCCTGTCCATCGGTGAG+TGG | 0.607517 | 4.4:+4156823 | None:intergenic |
| TCTAGCGTATTTGGAGGGAT+GGG | 0.615798 | 4.4:+4158782 | None:intergenic |
| CAAACTTGAATACTGTTCAA+AGG | 0.617373 | 4.4:-4158314 | MS.gene20186:intron |
| AGCATTGTAGAAGCGTCACT+TGG | 0.620345 | 4.4:-4158209 | MS.gene20186:CDS |
| GTGTATCCAAAGATCGCAGT+GGG | 0.624611 | 4.4:-4158410 | MS.gene20186:CDS |
| GCTTCGAATTCATGTACGCA+AGG | 0.624809 | 4.4:-4158670 | MS.gene20186:CDS |
| ACTCAACTGCTCAAGGACAA+AGG | 0.624888 | 4.4:-4158164 | MS.gene20186:CDS |
| AACTAGACATAGGCCATCAG+GGG | 0.624908 | 4.4:+4153663 | None:intergenic |
| AATACGCTAGATGGAACGCT+AGG | 0.637091 | 4.4:-4158770 | MS.gene20186:intron |
| ACAGCAGCACAACCTTCGAT+AGG | 0.641899 | 4.4:+4158137 | None:intergenic |
| AGCTTATGGATGCTACGTGT+AGG | 0.642304 | 4.4:-4153708 | MS.gene20186:CDS |
| CAGGATAAGCACCAAAGTGG+CGG | 0.647562 | 4.4:-4156808 | MS.gene20186:CDS |
| AACCAACATCAACTAGACAT+AGG | 0.649817 | 4.4:+4153653 | None:intergenic |
| AGCATCCATAAGCTTTAACA+AGG | 0.652057 | 4.4:+4153717 | None:intergenic |
| AATACTGAGTTCGAAAGTGA+CGG | 0.659184 | 4.4:-4158432 | MS.gene20186:CDS |
| AGGAAAATGGAGAAGAAACG+AGG | 0.662727 | 4.4:-4154434 | MS.gene20186:CDS |
| GGACAGGATAAGCACCAAAG+TGG | 0.670924 | 4.4:-4156811 | MS.gene20186:CDS |
| AATTTGTGATTCTGACAGCA+AGG | 0.676048 | 4.4:-4156749 | MS.gene20186:CDS |
| GTTGTTGTGTCTGAACAAGA+AGG | 0.682813 | 4.4:+4158899 | None:intergenic |
| GCACCAAAGTGGCGGCAATG+GGG | 0.683256 | 4.4:-4156800 | MS.gene20186:CDS |
| TGAACAAAACACTCTGTGGG+TGG | 0.683831 | 4.4:+4156282 | None:intergenic |
| TGGTGAACAAAACACTCTGT+GGG | 0.688204 | 4.4:+4156279 | None:intergenic |
| ATGGTGAACAAAACACTCTG+TGG | 0.689044 | 4.4:+4156278 | None:intergenic |
| GGAAAATGGAGAAGAAACGA+GGG | 0.714555 | 4.4:-4154433 | MS.gene20186:CDS |
| GGTGTATCCAAAGATCGCAG+TGG | 0.716506 | 4.4:-4158411 | MS.gene20186:CDS |
| ACTAGACATAGGCCATCAGG+GGG | 0.716575 | 4.4:+4153664 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+GGG | - | chr4.4:4154799-4154818 | MS.gene20186:intron | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr4.4:4154800-4154819 | MS.gene20186:intron | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr4.4:4154819-4154800 | None:intergenic | 0.0% |
| !! | AAAATTGTTATGGATAAATA+AGG | - | chr4.4:4155201-4155220 | MS.gene20186:intron | 15.0% |
| !! | AAATTATAGTCATATTCATT+AGG | - | chr4.4:4156753-4156772 | MS.gene20186:CDS | 15.0% |
| !! | AATGTGTATGAAAAAAAAAA+AGG | + | chr4.4:4157375-4157394 | None:intergenic | 15.0% |
| !! | ACATTTCTCAAAAAAAAAAA+TGG | + | chr4.4:4157021-4157040 | None:intergenic | 15.0% |
| !! | ATTTATGAATGACAAATATA+TGG | - | chr4.4:4157102-4157121 | MS.gene20186:CDS | 15.0% |
| !! | TCTTAATATTAGAAAGATAA+CGG | + | chr4.4:4158504-4158523 | None:intergenic | 15.0% |
| !!! | AAACAAATGAATCATTTTAA+AGG | - | chr4.4:4158538-4158557 | MS.gene20186:intron | 15.0% |
| !!! | ATTCTTTTTCTTTATATTCA+TGG | + | chr4.4:4155578-4155597 | None:intergenic | 15.0% |
| !!! | GAATTTAGAATAACAATATT+GGG | + | chr4.4:4156406-4156425 | None:intergenic | 15.0% |
| !!! | TATATTTTATCCATTTGTAA+TGG | - | chr4.4:4158585-4158604 | MS.gene20186:intron | 15.0% |
| !! | AAATTTCTGAATCATACATT+AGG | - | chr4.4:4157468-4157487 | MS.gene20186:intron | 20.0% |
| !! | AACAATAATAATGTGAATTC+TGG | - | chr4.4:4155639-4155658 | MS.gene20186:intron | 20.0% |
| !! | AAGACATTGATATTAAGAAT+AGG | + | chr4.4:4154502-4154521 | None:intergenic | 20.0% |
| !! | AATTGAAATGTAGTTAGTTA+GGG | + | chr4.4:4153989-4154008 | None:intergenic | 20.0% |
| !! | AGAAAAAGAATCAGAAAAAA+TGG | - | chr4.4:4155587-4155606 | MS.gene20186:intron | 20.0% |
| !! | AGAAAGAGAGAAAAAAATAA+AGG | - | chr4.4:4155234-4155253 | MS.gene20186:intron | 20.0% |
| !! | AGACATTGATATTAAGAATA+GGG | + | chr4.4:4154501-4154520 | None:intergenic | 20.0% |
| !! | ATATGTTATGTCTAACAATA+TGG | - | chr4.4:4154601-4154620 | MS.gene20186:intron | 20.0% |
| !! | ATATTGTTAGACATAACATA+TGG | + | chr4.4:4154602-4154621 | None:intergenic | 20.0% |
| !! | CAAAAAATTCTATAAAACCA+AGG | + | chr4.4:4158046-4158065 | None:intergenic | 20.0% |
| !! | GAATCAAATCTTAAATTGTT+TGG | - | chr4.4:4156062-4156081 | MS.gene20186:intron | 20.0% |
| !! | TAATTGAAATGTAGTTAGTT+AGG | + | chr4.4:4153990-4154009 | None:intergenic | 20.0% |
| !! | TAGAAAGTGAATAATTAAGA+AGG | + | chr4.4:4154041-4154060 | None:intergenic | 20.0% |
| !! | TTCTCAAAAAAAAAAATGGA+GGG | + | chr4.4:4157017-4157036 | None:intergenic | 20.0% |
| !! | TTTCTCAAAAAAAAAAATGG+AGG | + | chr4.4:4157018-4157037 | None:intergenic | 20.0% |
| !!! | AACAATTTTACCATCAAATT+AGG | + | chr4.4:4155190-4155209 | None:intergenic | 20.0% |
| !!! | AAGACCTATATTTTTAGAAA+TGG | - | chr4.4:4156940-4156959 | MS.gene20186:intron | 20.0% |
| !!! | AAGTGTATACTGTTTTTTTT+TGG | - | chr4.4:4157204-4157223 | MS.gene20186:intron | 20.0% |
| !!! | AGTGTATACTGTTTTTTTTT+GGG | - | chr4.4:4157205-4157224 | MS.gene20186:intron | 20.0% |
| !!! | ATAGTACTTTTGATGAAATA+GGG | + | chr4.4:4155011-4155030 | None:intergenic | 20.0% |
| !!! | ATTTGATGGTAAAATTGTTA+TGG | - | chr4.4:4155191-4155210 | MS.gene20186:intron | 20.0% |
| !!! | CGAATTTAGAATAACAATAT+TGG | + | chr4.4:4156407-4156426 | None:intergenic | 20.0% |
| !!! | TATAGTACTTTTGATGAAAT+AGG | + | chr4.4:4155012-4155031 | None:intergenic | 20.0% |
| !!! | TATGTTATTTTTTGTATGAC+AGG | - | chr4.4:4157398-4157417 | MS.gene20186:intron | 20.0% |
| !!! | TATGTTTTTTATTTCCTTAG+AGG | - | chr4.4:4158189-4158208 | MS.gene20186:CDS | 20.0% |
| !!! | TCATTTTATTTGACATTACA+GGG | - | chr4.4:4153852-4153871 | MS.gene20186:intron | 20.0% |
| !!! | TGTGACAGTTTTATATATAA+TGG | - | chr4.4:4155776-4155795 | MS.gene20186:intron | 20.0% |
| !!! | TTCATTTTATTTGACATTAC+AGG | - | chr4.4:4153851-4153870 | MS.gene20186:intron | 20.0% |
| !!! | TTTTTTTTTGAGAAATGTAG+AGG | - | chr4.4:4157023-4157042 | MS.gene20186:intron | 20.0% |
| ! | AAAATTCTTCTTTCCTATCA+CGG | - | chr4.4:4154182-4154201 | MS.gene20186:intron | 25.0% |
| ! | AAGATAAGCTAGAAATAAAG+TGG | + | chr4.4:4156679-4156698 | None:intergenic | 25.0% |
| ! | AAGTGAATAATTAAGAAGGA+AGG | + | chr4.4:4154037-4154056 | None:intergenic | 25.0% |
| ! | AATTAAGAAGGAAGGATAAA+GGG | + | chr4.4:4154029-4154048 | None:intergenic | 25.0% |
| ! | ACACCTTCATAAAAATTAGT+TGG | + | chr4.4:4154899-4154918 | None:intergenic | 25.0% |
| ! | ACGACATATAAATCATGTAA+CGG | + | chr4.4:4157788-4157807 | None:intergenic | 25.0% |
| ! | ATAATAATGTGAATTCTGGT+AGG | - | chr4.4:4155643-4155662 | MS.gene20186:intron | 25.0% |
| ! | ATTTGTTTGTGAAGATACAT+TGG | - | chr4.4:4156570-4156589 | MS.gene20186:intron | 25.0% |
| ! | CAGAAGAACAAAAAAACTAT+GGG | + | chr4.4:4158620-4158639 | None:intergenic | 25.0% |
| ! | CATGTCGCATATTATTTAAA+AGG | + | chr4.4:4155526-4155545 | None:intergenic | 25.0% |
| ! | GCAAAGTTATAACTAAAAAG+TGG | - | chr4.4:4154925-4154944 | MS.gene20186:intron | 25.0% |
| ! | GGTATAGTAAAATATTTCAG+AGG | + | chr4.4:4157873-4157892 | None:intergenic | 25.0% |
| ! | GTACATTTAACCTAATTTGA+TGG | - | chr4.4:4155177-4155196 | MS.gene20186:intron | 25.0% |
| ! | GTAGCAATTCATTTATAAGA+AGG | + | chr4.4:4154538-4154557 | None:intergenic | 25.0% |
| ! | TAAAAGTTACTCACAGTTAT+AGG | + | chr4.4:4156320-4156339 | None:intergenic | 25.0% |
| ! | TAATTAAGAAGGAAGGATAA+AGG | + | chr4.4:4154030-4154049 | None:intergenic | 25.0% |
| ! | TACTTGAATTTCTATCTTTG+TGG | - | chr4.4:4155964-4155983 | MS.gene20186:intron | 25.0% |
| ! | TCAGAAGAACAAAAAAACTA+TGG | + | chr4.4:4158621-4158640 | None:intergenic | 25.0% |
| ! | TGATATTAAGAATAGGGAAA+TGG | + | chr4.4:4154495-4154514 | None:intergenic | 25.0% |
| ! | TTACATGATTTATATGTCGT+TGG | - | chr4.4:4157788-4157807 | MS.gene20186:intron | 25.0% |
| ! | TTATGGATAAATAAGGATTG+AGG | - | chr4.4:4155208-4155227 | MS.gene20186:intron | 25.0% |
| ! | TTCTGCTTAAATCATATGAA+AGG | + | chr4.4:4156711-4156730 | None:intergenic | 25.0% |
| ! | TTGTTTATGCGACTATTATT+TGG | - | chr4.4:4156040-4156059 | MS.gene20186:intron | 25.0% |
| ! | TTTATACACTCAAACCATTA+TGG | - | chr4.4:4156989-4157008 | MS.gene20186:intron | 25.0% |
| ! | TTTGTTAGAAATGCTAGAAA+AGG | - | chr4.4:4157438-4157457 | MS.gene20186:intron | 25.0% |
| !! | AATAGCATAATTTGCATGTT+TGG | + | chr4.4:4157717-4157736 | None:intergenic | 25.0% |
| !! | ACACCAACTAATTTTTATGA+AGG | - | chr4.4:4154893-4154912 | MS.gene20186:intron | 25.0% |
| !! | ACCAAGAAATTTTCTATTGT+TGG | - | chr4.4:4157890-4157909 | MS.gene20186:intron | 25.0% |
| !! | ATACTTTCACATCATACTTT+TGG | - | chr4.4:4155999-4156018 | MS.gene20186:intron | 25.0% |
| !! | ATATGGAAGTTTGTTTATGA+TGG | - | chr4.4:4157119-4157138 | MS.gene20186:CDS | 25.0% |
| !! | ATTGCATCTTCAATTTCTTT+TGG | + | chr4.4:4155450-4155469 | None:intergenic | 25.0% |
| !! | ATTTTATCCATTTGTAATGG+AGG | - | chr4.4:4158588-4158607 | MS.gene20186:intron | 25.0% |
| !! | CCAAGAAATTTTCTATTGTT+GGG | - | chr4.4:4157891-4157910 | MS.gene20186:intron | 25.0% |
| !! | CTGAAAATACATTTTTGTCA+AGG | + | chr4.4:4157843-4157862 | None:intergenic | 25.0% |
| !! | GTCACCATTTCTAAAAATAT+AGG | + | chr4.4:4156947-4156966 | None:intergenic | 25.0% |
| !! | TACTTTCACATCATACTTTT+GGG | - | chr4.4:4156000-4156019 | MS.gene20186:intron | 25.0% |
| !! | TATGACTATAATTTGAAGCT+TGG | + | chr4.4:4156747-4156766 | None:intergenic | 25.0% |
| !! | TATGGAAGTTTGTTTATGAT+GGG | - | chr4.4:4157120-4157139 | MS.gene20186:CDS | 25.0% |
| !! | TGTACCAAAAATAAAAGTGT+TGG | + | chr4.4:4158274-4158293 | None:intergenic | 25.0% |
| !!! | AAAAAGAACAAACTTGTTGA+AGG | + | chr4.4:4154467-4154486 | None:intergenic | 25.0% |
| !!! | AAAAGAACAAACTTGTTGAA+GGG | + | chr4.4:4154466-4154485 | None:intergenic | 25.0% |
| !!! | ATATTTTTAGAAATGGTGAC+AGG | - | chr4.4:4156947-4156966 | MS.gene20186:intron | 25.0% |
| !!! | GTGTATACTGTTTTTTTTTG+GGG | - | chr4.4:4157206-4157225 | MS.gene20186:intron | 25.0% |
| !!! | TCTCTCTTTTAGAATGATAA+AGG | + | chr4.4:4158433-4158452 | None:intergenic | 25.0% |
| !!! | TGTATACTGTTTTTTTTTGG+GGG | - | chr4.4:4157207-4157226 | MS.gene20186:intron | 25.0% |
| !!! | TTTTATCCATTTGTAATGGA+GGG | - | chr4.4:4158589-4158608 | MS.gene20186:intron | 25.0% |
| CAAACTTGAATACTGTTCAA+AGG | - | chr4.4:4154234-4154253 | MS.gene20186:intron | 30.0% | |
| CATAGACCATCTCTAATAAT+TGG | - | chr4.4:4158681-4158700 | MS.gene20186:intron | 30.0% | |
| CCCAACAATAGAAAATTTCT+TGG | + | chr4.4:4157894-4157913 | None:intergenic | 30.0% | |
| CTAAAAGACACCTTCATAAA+AGG | + | chr4.4:4154844-4154863 | None:intergenic | 30.0% | |
| GGATATGTTTAGTGATTTGA+TGG | + | chr4.4:4156658-4156677 | None:intergenic | 30.0% | |
| GTGCAATGTGAATTATATTG+AGG | + | chr4.4:4157180-4157199 | None:intergenic | 30.0% | |
| TAAATGGTCAAGATGTGTAA+TGG | + | chr4.4:4157635-4157654 | None:intergenic | 30.0% | |
| TCAGTATTATCCGAAATTTC+TGG | + | chr4.4:4154104-4154123 | None:intergenic | 30.0% | |
| TCATGTAACGGCAAATATTA+TGG | + | chr4.4:4157776-4157795 | None:intergenic | 30.0% | |
| TGATTTAAGCAGAACATTAC+TGG | - | chr4.4:4156717-4156736 | MS.gene20186:CDS | 30.0% | |
| TTAGACATAACATATGGTTG+TGG | + | chr4.4:4154596-4154615 | None:intergenic | 30.0% | |
| TTAGTGATTTGATGGAACTT+GGG | + | chr4.4:4156650-4156669 | None:intergenic | 30.0% | |
| TTGGTTATGCAGAATTTGAA+CGG | - | chr4.4:4158912-4158931 | MS.gene20186:CDS | 30.0% | |
| TTTAGTGATTTGATGGAACT+TGG | + | chr4.4:4156651-4156670 | None:intergenic | 30.0% | |
| TTTCCTTCAGCAACAAATAA+TGG | - | chr4.4:4157571-4157590 | MS.gene20186:intron | 30.0% | |
| ! | AATCAGAAAAAATGGTTTGC+TGG | - | chr4.4:4155595-4155614 | MS.gene20186:intron | 30.0% |
| ! | ACTTTCACATCATACTTTTG+GGG | - | chr4.4:4156001-4156020 | MS.gene20186:intron | 30.0% |
| ! | ATAGTTTCTAGACAGCAAAA+CGG | - | chr4.4:4157267-4157286 | MS.gene20186:intron | 30.0% |
| ! | ATTCCATTATTTGTTGCTGA+AGG | + | chr4.4:4157577-4157596 | None:intergenic | 30.0% |
| ! | CAAATTATGCTATTTGTCCA+TGG | - | chr4.4:4157723-4157742 | MS.gene20186:intron | 30.0% |
| ! | CAGCTAGCATTTAAGATATA+TGG | - | chr4.4:4157529-4157548 | MS.gene20186:intron | 30.0% |
| ! | CTTTGAACAGTATTCAAGTT+TGG | + | chr4.4:4154236-4154255 | None:intergenic | 30.0% |
| ! | GCTAATCAAATTTTTGCAGA+TGG | - | chr4.4:4158751-4158770 | MS.gene20186:intron | 30.0% |
| ! | TTCTTGAAGCTTTTGTATCA+CGG | + | chr4.4:4155928-4155947 | None:intergenic | 30.0% |
| !! | AAAATACTAGAGCACTGTAT+TGG | - | chr4.4:4154286-4154305 | MS.gene20186:intron | 30.0% |
| !! | TGCTGATACTACTTTTAAGA+GGG | - | chr4.4:4156185-4156204 | MS.gene20186:intron | 30.0% |
| !! | TGTTGCTAACACTCTAAAAT+TGG | + | chr4.4:4158245-4158264 | None:intergenic | 30.0% |
| !! | TTTGTTTATGATGGGTTTCT+TGG | - | chr4.4:4157128-4157147 | MS.gene20186:intron | 30.0% |
| !!! | CACTCCAACACTTTTATTTT+TGG | - | chr4.4:4158267-4158286 | MS.gene20186:intron | 30.0% |
| !!! | GTTCTTTTTTTGCACTTTGT+CGG | - | chr4.4:4155355-4155374 | MS.gene20186:intron | 30.0% |
| !!! | TATTTTTGGTACACTAACAC+TGG | - | chr4.4:4158281-4158300 | MS.gene20186:intron | 30.0% |
| !!! | TTTTTTTTTGGGGGTACTTT+GGG | - | chr4.4:4157216-4157235 | MS.gene20186:intron | 30.0% |
| AAAAACAGATTCTCGTAAGC+AGG | - | chr4.4:4156543-4156562 | MS.gene20186:intron | 35.0% | |
| AAAACAGATTCTCGTAAGCA+GGG | - | chr4.4:4156544-4156563 | MS.gene20186:intron | 35.0% | |
| AAACAAAACTCAACTGCTCA+AGG | - | chr4.4:4154377-4154396 | MS.gene20186:intron | 35.0% | |
| AAAGTGGAAATCACACCTTA+AGG | - | chr4.4:4154941-4154960 | MS.gene20186:intron | 35.0% | |
| AACCAACATCAACTAGACAT+AGG | + | chr4.4:4158898-4158917 | None:intergenic | 35.0% | |
| AATACTGAGTTCGAAAGTGA+CGG | - | chr4.4:4154116-4154135 | MS.gene20186:intron | 35.0% | |
| AATCATATGTGTTCAGCGTA+AGG | - | chr4.4:4155843-4155862 | MS.gene20186:intron | 35.0% | |
| AATTCCTATTGTCACTCAGA+AGG | + | chr4.4:4157991-4158010 | None:intergenic | 35.0% | |
| AATTTGCATGTTTGGTTGGT+AGG | + | chr4.4:4157709-4157728 | None:intergenic | 35.0% | |
| AATTTGTGATTCTGACAGCA+AGG | - | chr4.4:4155799-4155818 | MS.gene20186:intron | 35.0% | |
| ACATCTTTGTTCACACAGTT+CGG | + | chr4.4:4155079-4155098 | None:intergenic | 35.0% | |
| ACGAAACTATAGCAACTCTA+TGG | - | chr4.4:4155031-4155050 | MS.gene20186:intron | 35.0% | |
| ACTCACAGTTATAGGCAATT+TGG | + | chr4.4:4156312-4156331 | None:intergenic | 35.0% | |
| AGAACAGGTTCCACATAAAA+CGG | - | chr4.4:4158333-4158352 | MS.gene20186:CDS | 35.0% | |
| ATTGGAGAAGCAAAAACCTT+CGG | + | chr4.4:4158227-4158246 | None:intergenic | 35.0% | |
| CAATCCATTTCAATGCAGAT+TGG | + | chr4.4:4157660-4157679 | None:intergenic | 35.0% | |
| CACATGCCAATTATTAGAGA+TGG | + | chr4.4:4158690-4158709 | None:intergenic | 35.0% | |
| CATCATCATCATCATGATTC+TGG | - | chr4.4:4154074-4154093 | MS.gene20186:intron | 35.0% | |
| GATGACTATCTCTTTCACTT+TGG | + | chr4.4:4153728-4153747 | None:intergenic | 35.0% | |
| GCAAAAACCTTCGGAAAATA+TGG | + | chr4.4:4158218-4158237 | None:intergenic | 35.0% | |
| GCATAATGAACCCTAGATTA+GGG | + | chr4.4:4155400-4155419 | None:intergenic | 35.0% | |
| GCTTATCATCAGAATAGAGA+GGG | - | chr4.4:4156805-4156824 | MS.gene20186:CDS | 35.0% | |
| GGAAAATATGGTTTCCTCTA+AGG | + | chr4.4:4158206-4158225 | None:intergenic | 35.0% | |
| GGGCAACAAAAAAGAGATAA+AGG | + | chr4.4:4156386-4156405 | None:intergenic | 35.0% | |
| GTAGACAAAACAGAATCCAT+AGG | + | chr4.4:4156623-4156642 | None:intergenic | 35.0% | |
| GTCCAAGTAAACACTGAATA+GGG | - | chr4.4:4156835-4156854 | MS.gene20186:CDS | 35.0% | |
| TAAAAGTAGTATCAGCACCA+AGG | + | chr4.4:4156182-4156201 | None:intergenic | 35.0% | |
| TAAACGACTAAACTCAGTGA+AGG | + | chr4.4:4156218-4156237 | None:intergenic | 35.0% | |
| TAGAAATGCTAGAAAAGGAC+TGG | - | chr4.4:4157443-4157462 | MS.gene20186:intron | 35.0% | |
| TAGTCCAATCTGCATTGAAA+TGG | - | chr4.4:4157653-4157672 | MS.gene20186:intron | 35.0% | |
| TATGGCTCATATACAGACAT+AGG | - | chr4.4:4154619-4154638 | MS.gene20186:intron | 35.0% | |
| TCAATGCAGATTGGACTAAA+TGG | + | chr4.4:4157651-4157670 | None:intergenic | 35.0% | |
| TCATATACAGACATAGGAGA+GGG | - | chr4.4:4154625-4154644 | MS.gene20186:intron | 35.0% | |
| TCCAAGTAAACACTGAATAG+GGG | - | chr4.4:4156836-4156855 | MS.gene20186:CDS | 35.0% | |
| TCTGTTAATATCGAAGTCCA+TGG | + | chr4.4:4157743-4157762 | None:intergenic | 35.0% | |
| TGCATAATGAACCCTAGATT+AGG | + | chr4.4:4155401-4155420 | None:intergenic | 35.0% | |
| TGCTTATCATCAGAATAGAG+AGG | - | chr4.4:4156804-4156823 | MS.gene20186:CDS | 35.0% | |
| TGGTTATGCAGAATTTGAAC+GGG | - | chr4.4:4158913-4158932 | MS.gene20186:CDS | 35.0% | |
| TGTCCAAGTAAACACTGAAT+AGG | - | chr4.4:4156834-4156853 | MS.gene20186:CDS | 35.0% | |
| TTACTGTCATTCTGTTTCAG+TGG | - | chr4.4:4156242-4156261 | MS.gene20186:intron | 35.0% | |
| TTGCTAAAAGACACCTTCAT+AGG | - | chr4.4:4154970-4154989 | MS.gene20186:intron | 35.0% | |
| TTTCCCTTTATCCTTCATCA+CGG | - | chr4.4:4153673-4153692 | MS.gene20186:CDS | 35.0% | |
| ! | AGCATCCATAAGCTTTAACA+AGG | + | chr4.4:4158834-4158853 | None:intergenic | 35.0% |
| ! | ATGATGATGATGATGAGGAA+GGG | + | chr4.4:4154069-4154088 | None:intergenic | 35.0% |
| ! | ATTAGGAAGCACATGTTGAT+GGG | - | chr4.4:4153624-4153643 | MS.gene20186:CDS | 35.0% |
| ! | CTTCCAATTTTTGCAAAAGC+CGG | + | chr4.4:4155877-4155896 | None:intergenic | 35.0% |
| ! | GAATCATGATGATGATGATG+AGG | + | chr4.4:4154074-4154093 | None:intergenic | 35.0% |
| ! | GCATAATTTGCATGTTTGGT+TGG | + | chr4.4:4157713-4157732 | None:intergenic | 35.0% |
| ! | TATTAGGAAGCACATGTTGA+TGG | - | chr4.4:4153623-4153642 | MS.gene20186:CDS | 35.0% |
| ! | TCTTGAAGCTTTTGTATCAC+GGG | + | chr4.4:4155927-4155946 | None:intergenic | 35.0% |
| ! | TGATGCCTTGTTAAAGCTTA+TGG | - | chr4.4:4158826-4158845 | MS.gene20186:CDS | 35.0% |
| ! | TTTTAGCAATCCACACCTTA+AGG | + | chr4.4:4154959-4154978 | None:intergenic | 35.0% |
| !! | GCTGATACTACTTTTAAGAG+GGG | - | chr4.4:4156186-4156205 | MS.gene20186:intron | 35.0% |
| !! | GTGCTGATACTACTTTTAAG+AGG | - | chr4.4:4156184-4156203 | MS.gene20186:intron | 35.0% |
| !! | TTCTGGAGTTCCAGAAATTT+CGG | - | chr4.4:4154091-4154110 | MS.gene20186:intron | 35.0% |
| !! | TTTATGTTTTGCTGTGCTTG+TGG | - | chr4.4:4156451-4156470 | MS.gene20186:intron | 35.0% |
| !!! | GTTTTTTTTTGGGGGTACTT+TGG | - | chr4.4:4157215-4157234 | MS.gene20186:intron | 35.0% |
| AAAAATGGAGGGCTCCATAA+TGG | + | chr4.4:4157006-4157025 | None:intergenic | 40.0% | |
| AACACTGAATAGGGGAAGTA+AGG | - | chr4.4:4156844-4156863 | MS.gene20186:CDS | 40.0% | |
| AATGAACCCTAGATTAGGGA+CGG | + | chr4.4:4155396-4155415 | None:intergenic | 40.0% | |
| ACACTGAATAGGGGAAGTAA+GGG | - | chr4.4:4156845-4156864 | MS.gene20186:CDS | 40.0% | |
| ACCTGAGATTGGAAAAGAAG+AGG | + | chr4.4:4153961-4153980 | None:intergenic | 40.0% | |
| ACGGCGTTGTAATTATTCGA+TGG | - | chr4.4:4153698-4153717 | MS.gene20186:CDS | 40.0% | |
| AGGAAAATGGAGAAGAAACG+AGG | - | chr4.4:4158114-4158133 | MS.gene20186:CDS | 40.0% | |
| AGGATCCTCTCTCAAAAGAA+TGG | - | chr4.4:4156885-4156904 | MS.gene20186:CDS | 40.0% | |
| ATAAAGGTAACGCCTCCATT+TGG | + | chr4.4:4155699-4155718 | None:intergenic | 40.0% | |
| ATATGTGTTCAGCGTAAGGA+AGG | - | chr4.4:4155847-4155866 | MS.gene20186:intron | 40.0% | |
| ATGGTGAACAAAACACTCTG+TGG | + | chr4.4:4156273-4156292 | None:intergenic | 40.0% | |
| ATTTCACCTGTGACATTGCT+AGG | - | chr4.4:4158094-4158113 | MS.gene20186:CDS | 40.0% | |
| CATATACAGACATAGGAGAG+GGG | - | chr4.4:4154626-4154645 | MS.gene20186:intron | 40.0% | |
| CGGTGAGTGGGAAAATATAA+AGG | + | chr4.4:4155715-4155734 | None:intergenic | 40.0% | |
| CTAAAAGACACCTTCATAGG+TGG | - | chr4.4:4154973-4154992 | MS.gene20186:intron | 40.0% | |
| CTAGACAGCAAAACGGAAAA+AGG | - | chr4.4:4157274-4157293 | MS.gene20186:intron | 40.0% | |
| CTCATATACAGACATAGGAG+AGG | - | chr4.4:4154624-4154643 | MS.gene20186:intron | 40.0% | |
| CTGTGACATTGCTAGGAAAA+TGG | - | chr4.4:4158101-4158120 | MS.gene20186:CDS | 40.0% | |
| GAACCTGTTCTCAAAATGGT+GGG | + | chr4.4:4158324-4158343 | None:intergenic | 40.0% | |
| GAAGTAAGGGCAATTTCTGA+AGG | - | chr4.4:4156858-4156877 | MS.gene20186:CDS | 40.0% | |
| GAGGGTTGTATCTGTATATG+AGG | - | chr4.4:4155494-4155513 | MS.gene20186:intron | 40.0% | |
| GCATAACCCTCCATTACAAA+TGG | + | chr4.4:4158598-4158617 | None:intergenic | 40.0% | |
| GGAAAATGGAGAAGAAACGA+GGG | - | chr4.4:4158115-4158134 | MS.gene20186:CDS | 40.0% | |
| GGATCCTCTCTCAAAAGAAT+GGG | - | chr4.4:4156886-4156905 | MS.gene20186:CDS | 40.0% | |
| GTCTGTGCATTCTTCAGAAA+AGG | + | chr4.4:4157056-4157075 | None:intergenic | 40.0% | |
| GTTCATTATGCACAGACACT+TGG | - | chr4.4:4155409-4155428 | MS.gene20186:intron | 40.0% | |
| GTTGTTGTGTCTGAACAAGA+AGG | + | chr4.4:4153652-4153671 | None:intergenic | 40.0% | |
| TACGCCAGAAACTTTAGTGA+TGG | + | chr4.4:4156918-4156937 | None:intergenic | 40.0% | |
| TAGCAATGTCACAGGTGAAA+TGG | + | chr4.4:4158095-4158114 | None:intergenic | 40.0% | |
| TATGACTAACCAACTGACAG+AGG | - | chr4.4:4155319-4155338 | MS.gene20186:intron | 40.0% | |
| TCAGCACCAAGGAAATATGA+AGG | + | chr4.4:4156171-4156190 | None:intergenic | 40.0% | |
| TCCCCTATTCAGTGTTTACT+TGG | + | chr4.4:4156840-4156859 | None:intergenic | 40.0% | |
| TGACAGGTGTTTCGTATTAC+TGG | - | chr4.4:4156963-4156982 | MS.gene20186:intron | 40.0% | |
| TGACCGTGATGAAGGATAAA+GGG | + | chr4.4:4153679-4153698 | None:intergenic | 40.0% | |
| TGCTCCATCACTAAAGTTTC+TGG | - | chr4.4:4156911-4156930 | MS.gene20186:intron | 40.0% | |
| TGGTGAACAAAACACTCTGT+GGG | + | chr4.4:4156272-4156291 | None:intergenic | 40.0% | |
| TGTGGAACCTGTTCTCAAAA+TGG | + | chr4.4:4158328-4158347 | None:intergenic | 40.0% | |
| TTCCATCTAGCGTATTTGGA+GGG | + | chr4.4:4153774-4153793 | None:intergenic | 40.0% | |
| TTGTCCTTCTGAGTGACAAT+AGG | - | chr4.4:4157984-4158003 | MS.gene20186:intron | 40.0% | |
| TTGTGGAATGCAGAGACATA+TGG | + | chr4.4:4154579-4154598 | None:intergenic | 40.0% | |
| TTTATCCTTCATCACGGTCA+CGG | - | chr4.4:4153679-4153698 | MS.gene20186:CDS | 40.0% | |
| ! | CATGATGATGATGATGAGGA+AGG | + | chr4.4:4154070-4154089 | None:intergenic | 40.0% |
| ! | CATTTTCCTAGCAATGTCAC+AGG | + | chr4.4:4158103-4158122 | None:intergenic | 40.0% |
| ! | CGAGAAGACACCTTTTATGA+AGG | - | chr4.4:4154831-4154850 | MS.gene20186:intron | 40.0% |
| ! | CGGCTTTTGCAAAAATTGGA+AGG | - | chr4.4:4155875-4155894 | MS.gene20186:intron | 40.0% |
| ! | GAGGAAACCATATTTTCCGA+AGG | - | chr4.4:4158208-4158227 | MS.gene20186:CDS | 40.0% |
| ! | GATACAACCCTCAATTTTCC+TGG | + | chr4.4:4155486-4155505 | None:intergenic | 40.0% |
| ! | GTAGATCTCACCGTTTTATG+TGG | + | chr4.4:4158346-4158365 | None:intergenic | 40.0% |
| ! | TATATTTTCCCACTCACCGA+TGG | - | chr4.4:4155716-4155735 | MS.gene20186:intron | 40.0% |
| ! | TATCACGGTGCTTCTTTTGA+TGG | - | chr4.4:4154197-4154216 | MS.gene20186:intron | 40.0% |
| ! | TTTTACTTGAACACTGTCCG+TGG | - | chr4.4:4153922-4153941 | MS.gene20186:intron | 40.0% |
| !! | AAATCATTGACTCGTTGCCA+AGG | + | chr4.4:4153904-4153923 | None:intergenic | 40.0% |
| !! | ATCAAAAGAAGCACCGTGAT+AGG | + | chr4.4:4154198-4154217 | None:intergenic | 40.0% |
| !! | GAACCGGCTTTTGCAAAAAT+TGG | - | chr4.4:4155871-4155890 | MS.gene20186:intron | 40.0% |
| !! | TGCTTGTTTTCATCCTAGCA+CGG | - | chr4.4:4157499-4157518 | MS.gene20186:intron | 40.0% |
| !! | TGTTTGGTTGGTAGGCTAAT+TGG | + | chr4.4:4157701-4157720 | None:intergenic | 40.0% |
| !! | TTATGATGGGTTTCTTGGAC+CGG | - | chr4.4:4157133-4157152 | MS.gene20186:intron | 40.0% |
| !! | TTCACATATTGACTCGACTG+AGG | - | chr4.4:4158729-4158748 | MS.gene20186:intron | 40.0% |
| !! | TTTTTGTTTGACAGCACTCG+AGG | - | chr4.4:4156132-4156151 | MS.gene20186:intron | 40.0% |
| !!! | TGCTAATCGCTTTTTACGCA+AGG | - | chr4.4:4158157-4158176 | MS.gene20186:CDS | 40.0% |
| AACCTTCCGTCCCTAATCTA+GGG | - | chr4.4:4155387-4155406 | MS.gene20186:intron | 45.0% | |
| AACTAGACATAGGCCATCAG+GGG | + | chr4.4:4158888-4158907 | None:intergenic | 45.0% | |
| AATACGCTAGATGGAACGCT+AGG | - | chr4.4:4153778-4153797 | MS.gene20186:CDS | 45.0% | |
| AATTCATGTACGCAAGGCCT+TGG | - | chr4.4:4153884-4153903 | MS.gene20186:intron | 45.0% | |
| AATTGGGCCTAACACACGTT+TGG | + | chr4.4:4154703-4154722 | None:intergenic | 45.0% | |
| ACAATTAGAGAAGCTGCAGC+CGG | - | chr4.4:4158794-4158813 | MS.gene20186:CDS | 45.0% | |
| ACAGCACTCGAGGAATAGAT+GGG | - | chr4.4:4156142-4156161 | MS.gene20186:intron | 45.0% | |
| ACTCAACTGCTCAAGGACAA+AGG | - | chr4.4:4154384-4154403 | MS.gene20186:intron | 45.0% | |
| AGCGTTCCATCTAGCGTATT+TGG | + | chr4.4:4153778-4153797 | None:intergenic | 45.0% | |
| AGCTTATGGATGCTACGTGT+AGG | - | chr4.4:4158840-4158859 | MS.gene20186:CDS | 45.0% | |
| AGGCTGCGACTAATTTCAAG+TGG | + | chr4.4:4157355-4157374 | None:intergenic | 45.0% | |
| ATCACGGGCAAACATCTTGT+AGG | + | chr4.4:4155912-4155931 | None:intergenic | 45.0% | |
| ATCCCTCCAAATACGCTAGA+TGG | - | chr4.4:4153769-4153788 | MS.gene20186:CDS | 45.0% | |
| ATCCGAACTTCTCTGCCAAA+TGG | - | chr4.4:4155681-4155700 | MS.gene20186:intron | 45.0% | |
| ATCTAGCGTATTTGGAGGGA+TGG | + | chr4.4:4153770-4153789 | None:intergenic | 45.0% | |
| ATGCACAGACACTTGGAAGA+AGG | - | chr4.4:4155416-4155435 | MS.gene20186:intron | 45.0% | |
| ATGCTTTAACTCAGACGCCT+TGG | - | chr4.4:4158026-4158045 | MS.gene20186:intron | 45.0% | |
| ATTGGGCCTAACACACGTTT+GGG | + | chr4.4:4154702-4154721 | None:intergenic | 45.0% | |
| CAACTAGACATAGGCCATCA+GGG | + | chr4.4:4158889-4158908 | None:intergenic | 45.0% | |
| CCTGATTGTGCAAATGCCAT+GGG | - | chr4.4:4158644-4158663 | MS.gene20186:CDS | 45.0% | |
| CTCCATTTGGCAGAGAAGTT+CGG | + | chr4.4:4155686-4155705 | None:intergenic | 45.0% | |
| GACAAAGGTTTGCCTATCGA+AGG | - | chr4.4:4154399-4154418 | MS.gene20186:CDS | 45.0% | |
| GCACCAAGGAAATATGAAGG+TGG | + | chr4.4:4156168-4156187 | None:intergenic | 45.0% | |
| GCTCTCTACTCTAAGCTTCT+AGG | - | chr4.4:4156512-4156531 | MS.gene20186:intron | 45.0% | |
| GCTTCGAATTCATGTACGCA+AGG | - | chr4.4:4153878-4153897 | MS.gene20186:intron | 45.0% | |
| GGAAATCACACCTTAAGGTG+TGG | - | chr4.4:4154946-4154965 | MS.gene20186:intron | 45.0% | |
| GGAACCTGTTCTCAAAATGG+TGG | + | chr4.4:4158325-4158344 | None:intergenic | 45.0% | |
| GTGACCGTGATGAAGGATAA+AGG | + | chr4.4:4153680-4153699 | None:intergenic | 45.0% | |
| GTGATTCTGACAGCAAGGAT+GGG | - | chr4.4:4155804-4155823 | MS.gene20186:intron | 45.0% | |
| GTGTATCCAAAGATCGCAGT+GGG | - | chr4.4:4154138-4154157 | MS.gene20186:intron | 45.0% | |
| GTTCCATCTAGCGTATTTGG+AGG | + | chr4.4:4153775-4153794 | None:intergenic | 45.0% | |
| GTTGCTGGTCGAACAGATAA+AGG | - | chr4.4:4154432-4154451 | MS.gene20186:CDS | 45.0% | |
| TAGCAACTCTATGGTCGTAG+AGG | - | chr4.4:4155040-4155059 | MS.gene20186:intron | 45.0% | |
| TCAACTAGACATAGGCCATC+AGG | + | chr4.4:4158890-4158909 | None:intergenic | 45.0% | |
| TCCTGATTGTGCAAATGCCA+TGG | - | chr4.4:4158643-4158662 | MS.gene20186:CDS | 45.0% | |
| TCGTCTATACCTCTGTCAGT+TGG | + | chr4.4:4155331-4155350 | None:intergenic | 45.0% | |
| TCTAGCGTATTTGGAGGGAT+GGG | + | chr4.4:4153769-4153788 | None:intergenic | 45.0% | |
| TGAACAAAACACTCTGTGGG+TGG | + | chr4.4:4156269-4156288 | None:intergenic | 45.0% | |
| TGTGATTCTGACAGCAAGGA+TGG | - | chr4.4:4155803-4155822 | MS.gene20186:intron | 45.0% | |
| TGTTAGGCCCAATTGTCGTT+GGG | - | chr4.4:4154709-4154728 | MS.gene20186:intron | 45.0% | |
| TTAGGGTTTCGACCTGAGAT+TGG | + | chr4.4:4153972-4153991 | None:intergenic | 45.0% | |
| TTGCTAGAAGCCACCTATGA+AGG | + | chr4.4:4154986-4155005 | None:intergenic | 45.0% | |
| ! | CATTGGTTGATCCAGAGACA+TGG | - | chr4.4:4156587-4156606 | MS.gene20186:intron | 45.0% |
| ! | GCCTCTTCTTTTCCAATCTC+AGG | - | chr4.4:4153957-4153976 | MS.gene20186:intron | 45.0% |
| ! | GGCCTATGTCTAGTTGATGT+TGG | - | chr4.4:4158893-4158912 | MS.gene20186:CDS | 45.0% |
| ! | GGGCAATTTCTGAAGGAGTA+AGG | - | chr4.4:4156865-4156884 | MS.gene20186:CDS | 45.0% |
| ! | TCGTGGGTATTGTCGTAATC+TGG | - | chr4.4:4154773-4154792 | MS.gene20186:intron | 45.0% |
| ! | TGACAGAGGTATAGACGAGT+GGG | - | chr4.4:4155333-4155352 | MS.gene20186:intron | 45.0% |
| ! | TTGGTGCTTATCCTGTCCAT+CGG | + | chr4.4:4155735-4155754 | None:intergenic | 45.0% |
| !! | AGCATTGTAGAAGCGTCACT+TGG | - | chr4.4:4154339-4154358 | MS.gene20186:intron | 45.0% |
| !! | CACTCCCATTCTTTTGAGAG+AGG | + | chr4.4:4156893-4156912 | None:intergenic | 45.0% |
| !! | CTTGTTTTCATCCTAGCACG+GGG | - | chr4.4:4157501-4157520 | MS.gene20186:intron | 45.0% |
| !! | GCTTGTTTTCATCCTAGCAC+GGG | - | chr4.4:4157500-4157519 | MS.gene20186:intron | 45.0% |
| !! | TGTCCCACCATTTTGAGAAC+AGG | - | chr4.4:4158318-4158337 | MS.gene20186:CDS | 45.0% |
| !! | TAATAAATAAAAAAATATAC+TGG | + | chr4.4:4157951-4157970 | None:intergenic | 5.0% |
| AACCCTAGATTAGGGACGGA+AGG | + | chr4.4:4155392-4155411 | None:intergenic | 50.0% | |
| ACAGACATAGGAGAGGGGTA+AGG | - | chr4.4:4154631-4154650 | MS.gene20186:intron | 50.0% | |
| ACAGCAGCACAACCTTCGAT+AGG | + | chr4.4:4154414-4154433 | None:intergenic | 50.0% | |
| ACGCAGCACCAGGAAAATTG+AGG | - | chr4.4:4155475-4155494 | MS.gene20186:intron | 50.0% | |
| ACTAGACATAGGCCATCAGG+GGG | + | chr4.4:4158887-4158906 | None:intergenic | 50.0% | |
| AGACATAGGAGAGGGGTAAG+GGG | - | chr4.4:4154633-4154652 | MS.gene20186:intron | 50.0% | |
| CAAAGATCGCAGTGGGAAGT+GGG | - | chr4.4:4154145-4154164 | MS.gene20186:intron | 50.0% | |
| CAGAATCCATAGGCCAGTAG+TGG | + | chr4.4:4156613-4156632 | None:intergenic | 50.0% | |
| CAGACATAGGAGAGGGGTAA+GGG | - | chr4.4:4154632-4154651 | MS.gene20186:intron | 50.0% | |
| CAGGATAAGCACCAAAGTGG+CGG | - | chr4.4:4155740-4155759 | MS.gene20186:intron | 50.0% | |
| CCCATGGCATTTGCACAATC+AGG | + | chr4.4:4158647-4158666 | None:intergenic | 50.0% | |
| CGAACTTCTCTGCCAAATGG+AGG | - | chr4.4:4155684-4155703 | MS.gene20186:intron | 50.0% | |
| CGCAGCACCAGGAAAATTGA+GGG | - | chr4.4:4155476-4155495 | MS.gene20186:intron | 50.0% | |
| CGTATTTGGAGGGATGGGTA+TGG | + | chr4.4:4153764-4153783 | None:intergenic | 50.0% | |
| GAACCTTCCGTCCCTAATCT+AGG | - | chr4.4:4155386-4155405 | MS.gene20186:intron | 50.0% | |
| GACAGCACTCGAGGAATAGA+TGG | - | chr4.4:4156141-4156160 | MS.gene20186:intron | 50.0% | |
| GAGGCAAAGAGAAGTTGCCA+CGG | + | chr4.4:4153942-4153961 | None:intergenic | 50.0% | |
| GCAATAAATGACGCAGCACC+AGG | - | chr4.4:4155465-4155484 | MS.gene20186:intron | 50.0% | |
| GGACAGGATAAGCACCAAAG+TGG | - | chr4.4:4155737-4155756 | MS.gene20186:intron | 50.0% | |
| GGCAGAGAAGTTCGGATGAA+AGG | + | chr4.4:4155678-4155697 | None:intergenic | 50.0% | |
| GGCTGCAGCTTCTCTAATTG+TGG | + | chr4.4:4158795-4158814 | None:intergenic | 50.0% | |
| GGGCCACCTTCATATTTCCT+TGG | - | chr4.4:4156162-4156181 | MS.gene20186:intron | 50.0% | |
| GGTGTATCCAAAGATCGCAG+TGG | - | chr4.4:4154137-4154156 | MS.gene20186:intron | 50.0% | |
| GTGTTAGGCCCAATTGTCGT+TGG | - | chr4.4:4154708-4154727 | MS.gene20186:intron | 50.0% | |
| GTTAGGCCCAATTGTCGTTG+GGG | - | chr4.4:4154710-4154729 | MS.gene20186:intron | 50.0% | |
| GTTTGGCCCAAACGTGTGTT+AGG | - | chr4.4:4154693-4154712 | MS.gene20186:intron | 50.0% | |
| TATCCTGTCCATCGGTGAGT+GGG | + | chr4.4:4155727-4155746 | None:intergenic | 50.0% | |
| TCAGCGTAAGGAAGGTGAAC+CGG | - | chr4.4:4155855-4155874 | MS.gene20186:intron | 50.0% | |
| TGTTCACCATGCTCGAGCTA+TGG | - | chr4.4:4156283-4156302 | MS.gene20186:CDS | 50.0% | |
| TTAGGCCCAATTGTCGTTGG+GGG | - | chr4.4:4154711-4154730 | MS.gene20186:intron | 50.0% | |
| TTATCCTGTCCATCGGTGAG+TGG | + | chr4.4:4155728-4155747 | None:intergenic | 50.0% | |
| ! | CAAGGCATCATCTTCAGCAC+CGG | + | chr4.4:4158816-4158835 | None:intergenic | 50.0% |
| ! | CTGACAGAGGTATAGACGAG+TGG | - | chr4.4:4155332-4155351 | MS.gene20186:intron | 50.0% |
| ! | GCAGATGGTTAGAGTGCTTG+TGG | - | chr4.4:4158766-4158785 | MS.gene20186:intron | 50.0% |
| !! | ACGGTGCTTCTTTTGATGGC+TGG | - | chr4.4:4154201-4154220 | MS.gene20186:intron | 50.0% |
| !! | TGGATGTGACTTGCTCCAAC+TGG | - | chr4.4:4156471-4156490 | MS.gene20186:intron | 50.0% |
| AAGCACCAAAGTGGCGGCAA+TGG | - | chr4.4:4155746-4155765 | MS.gene20186:intron | 55.0% | |
| AATTGTCGTTGGGGGAGACG+GGG | - | chr4.4:4154719-4154738 | MS.gene20186:intron | 55.0% | |
| ACACGTTTGGGCCAAACCCA+AGG | + | chr4.4:4154690-4154709 | None:intergenic | 55.0% | |
| AGCACCAAAGTGGCGGCAAT+GGG | - | chr4.4:4155747-4155766 | MS.gene20186:intron | 55.0% | |
| ATACCCACGAACCATGACCG+CGG | + | chr4.4:4154763-4154782 | None:intergenic | 55.0% | |
| CAATTGTCGTTGGGGGAGAC+GGG | - | chr4.4:4154718-4154737 | MS.gene20186:intron | 55.0% | |
| CACGTTTGGGCCAAACCCAA+GGG | + | chr4.4:4154689-4154708 | None:intergenic | 55.0% | |
| CCAAAGATCGCAGTGGGAAG+TGG | - | chr4.4:4154144-4154163 | MS.gene20186:intron | 55.0% | |
| CCAATTGTCGTTGGGGGAGA+CGG | - | chr4.4:4154717-4154736 | MS.gene20186:intron | 55.0% | |
| CCACTTCCCACTGCGATCTT+TGG | + | chr4.4:4154147-4154166 | None:intergenic | 55.0% | |
| CGTCTCCCCCAACGACAATT+GGG | + | chr4.4:4154719-4154738 | None:intergenic | 55.0% | |
| TAGCTGAAGAACCCCGTGCT+AGG | + | chr4.4:4157515-4157534 | None:intergenic | 55.0% | |
| TCCAGAGACATGGCCACTAC+TGG | - | chr4.4:4156597-4156616 | MS.gene20186:intron | 55.0% | |
| TGGCTTCCATAGCTCGAGCA+TGG | + | chr4.4:4156292-4156311 | None:intergenic | 55.0% | |
| TTTCCCACTCACCGATGGAC+AGG | - | chr4.4:4155721-4155740 | MS.gene20186:intron | 55.0% | |
| ! | ACATGGCCACTACTGGCCTA+TGG | - | chr4.4:4156604-4156623 | MS.gene20186:intron | 55.0% |
| ! | GAAGGTTGTGCTGCTGTTGC+TGG | - | chr4.4:4154417-4154436 | MS.gene20186:CDS | 55.0% |
| ! | GACTTGCTCCAACTGGCAGA+GGG | - | chr4.4:4156478-4156497 | MS.gene20186:intron | 55.0% |
| !! | TGACTTGCTCCAACTGGCAG+AGG | - | chr4.4:4156477-4156496 | MS.gene20186:intron | 55.0% |
| !! | TGATGGGTTTCTTGGACCGG+TGG | - | chr4.4:4157136-4157155 | MS.gene20186:intron | 55.0% |
| AATGCCATGGGCGTGCAGTC+TGG | - | chr4.4:4158656-4158675 | MS.gene20186:CDS | 60.0% | |
| ACTCCCCATTGCCGCCACTT+TGG | + | chr4.4:4155754-4155773 | None:intergenic | 60.0% | |
| ATTGTCGTTGGGGGAGACGG+GGG | - | chr4.4:4154720-4154739 | MS.gene20186:intron | 60.0% | |
| CAACGCCGTGACCGTGATGA+AGG | + | chr4.4:4153687-4153706 | None:intergenic | 60.0% | |
| CATAGGAGAGGGGTAAGGGG+CGG | - | chr4.4:4154636-4154655 | MS.gene20186:intron | 60.0% | |
| CCGTCTCCCCCAACGACAAT+TGG | + | chr4.4:4154720-4154739 | None:intergenic | 60.0% | |
| GATGACCCAGCTCAAGCCAC+CGG | + | chr4.4:4157155-4157174 | None:intergenic | 60.0% | |
| GCACCAAAGTGGCGGCAATG+GGG | - | chr4.4:4155748-4155767 | MS.gene20186:intron | 60.0% | |
| GCCAGTAGTGGCCATGTCTC+TGG | + | chr4.4:4156601-4156620 | None:intergenic | 60.0% | |
| TGTACCAGACTGCACGCCCA+TGG | + | chr4.4:4158663-4158682 | None:intergenic | 60.0% | |
| TTGGACCGGTGGCTTGAGCT+GGG | - | chr4.4:4157147-4157166 | MS.gene20186:intron | 60.0% | |
| TTGGGCCAAACCCAAGGGCA+GGG | + | chr4.4:4154684-4154703 | None:intergenic | 60.0% | |
| TTTGGGCCAAACCCAAGGGC+AGG | + | chr4.4:4154685-4154704 | None:intergenic | 60.0% | |
| ! | GAACCATGACCGCGGTGCTA+TGG | + | chr4.4:4154755-4154774 | None:intergenic | 60.0% |
| AGCACCGCGGTCATGGTTCG+TGG | - | chr4.4:4154756-4154775 | MS.gene20186:intron | 65.0% | |
| AGCGTGCACCCTCTGCCAGT+TGG | + | chr4.4:4156489-4156508 | None:intergenic | 65.0% | |
| CTTGGACCGGTGGCTTGAGC+TGG | - | chr4.4:4157146-4157165 | MS.gene20186:intron | 65.0% | |
| GCACCGCGGTCATGGTTCGT+GGG | - | chr4.4:4154757-4154776 | MS.gene20186:intron | 65.0% | |
| GGACCATAGCACCGCGGTCA+TGG | - | chr4.4:4154749-4154768 | MS.gene20186:intron | 65.0% | |
| TGGGCCAAACCCAAGGGCAG+GGG | + | chr4.4:4154683-4154702 | None:intergenic | 65.0% | |
| ! | CATAGGCCATCAGGGGGTGC+TGG | + | chr4.4:4158881-4158900 | None:intergenic | 65.0% |
| AAACCCAAGGGCAGGGGCGG+AGG | + | chr4.4:4154677-4154696 | None:intergenic | 70.0% | |
| AACCCAAGGGCAGGGGCGGA+GGG | + | chr4.4:4154676-4154695 | None:intergenic | 70.0% | |
| GAGAGGGGTAAGGGGCGGAG+CGG | - | chr4.4:4154641-4154660 | MS.gene20186:intron | 70.0% | |
| GCCAAACCCAAGGGCAGGGG+CGG | + | chr4.4:4154680-4154699 | None:intergenic | 70.0% | |
| GCTCCTCCAGCACCCCCTGA+TGG | - | chr4.4:4158872-4158891 | MS.gene20186:CDS | 70.0% | |
| TCCGCCCCTGCCCTTGGGTT+TGG | - | chr4.4:4154676-4154695 | MS.gene20186:intron | 70.0% | |
| TGCGGGGGACCATAGCACCG+CGG | - | chr4.4:4154743-4154762 | MS.gene20186:intron | 70.0% | |
| !! | AGGCCATCAGGGGGTGCTGG+AGG | + | chr4.4:4158878-4158897 | None:intergenic | 70.0% |
| !! | AGGGGGTGCTGGAGGAGCAG+TGG | + | chr4.4:4158870-4158889 | None:intergenic | 70.0% |
| CGTTGGGGGAGACGGGGGTG+CGG | - | chr4.4:4154725-4154744 | MS.gene20186:intron | 75.0% | |
| CTCCCTCCGCCCCTGCCCTT+GGG | - | chr4.4:4154671-4154690 | MS.gene20186:intron | 75.0% | |
| ! | GTTGGGGGAGACGGGGGTGC+GGG | - | chr4.4:4154726-4154745 | MS.gene20186:intron | 75.0% |
| ! | TTGGGGGAGACGGGGGTGCG+GGG | - | chr4.4:4154727-4154746 | MS.gene20186:intron | 75.0% |
| ! | GCTCCCTCCGCCCCTGCCCT+TGG | - | chr4.4:4154670-4154689 | MS.gene20186:intron | 80.0% |
| !! | TGGGGGAGACGGGGGTGCGG+GGG | - | chr4.4:4154728-4154747 | MS.gene20186:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 4153609 | 4158961 | 4153609 | ID=MS.gene20186 |
| chr4.4 | mRNA | 4153609 | 4158961 | 4153609 | ID=MS.gene20186.t1;Parent=MS.gene20186 |
| chr4.4 | exon | 4158771 | 4158961 | 4158771 | ID=MS.gene20186.t1.exon1;Parent=MS.gene20186.t1 |
| chr4.4 | CDS | 4158771 | 4158961 | 4158771 | ID=cds.MS.gene20186.t1;Parent=MS.gene20186.t1 |
| chr4.4 | exon | 4158592 | 4158697 | 4158592 | ID=MS.gene20186.t1.exon2;Parent=MS.gene20186.t1 |
| chr4.4 | CDS | 4158592 | 4158697 | 4158592 | ID=cds.MS.gene20186.t1;Parent=MS.gene20186.t1 |
| chr4.4 | exon | 4158315 | 4158505 | 4158315 | ID=MS.gene20186.t1.exon3;Parent=MS.gene20186.t1 |
| chr4.4 | CDS | 4158315 | 4158505 | 4158315 | ID=cds.MS.gene20186.t1;Parent=MS.gene20186.t1 |
| chr4.4 | exon | 4158084 | 4158229 | 4158084 | ID=MS.gene20186.t1.exon4;Parent=MS.gene20186.t1 |
| chr4.4 | CDS | 4158084 | 4158229 | 4158084 | ID=cds.MS.gene20186.t1;Parent=MS.gene20186.t1 |
| chr4.4 | exon | 4157055 | 4157146 | 4157055 | ID=MS.gene20186.t1.exon5;Parent=MS.gene20186.t1 |
| chr4.4 | CDS | 4157055 | 4157146 | 4157055 | ID=cds.MS.gene20186.t1;Parent=MS.gene20186.t1 |
| chr4.4 | exon | 4156619 | 4156905 | 4156619 | ID=MS.gene20186.t1.exon6;Parent=MS.gene20186.t1 |
| chr4.4 | CDS | 4156619 | 4156905 | 4156619 | ID=cds.MS.gene20186.t1;Parent=MS.gene20186.t1 |
| chr4.4 | exon | 4156245 | 4156308 | 4156245 | ID=MS.gene20186.t1.exon7;Parent=MS.gene20186.t1 |
| chr4.4 | CDS | 4156245 | 4156308 | 4156245 | ID=cds.MS.gene20186.t1;Parent=MS.gene20186.t1 |
| chr4.4 | exon | 4154392 | 4154454 | 4154392 | ID=MS.gene20186.t1.exon8;Parent=MS.gene20186.t1 |
| chr4.4 | CDS | 4154392 | 4154454 | 4154392 | ID=cds.MS.gene20186.t1;Parent=MS.gene20186.t1 |
| chr4.4 | exon | 4153609 | 4153800 | 4153609 | ID=MS.gene20186.t1.exon9;Parent=MS.gene20186.t1 |
| chr4.4 | CDS | 4153609 | 4153800 | 4153609 | ID=cds.MS.gene20186.t1;Parent=MS.gene20186.t1 |
| Gene Sequence |
| Protein sequence |
