Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20205.t1 | XP_024628370.1 | 98.8 | 171 | 2 | 0 | 1 | 171 | 1 | 171 | 1.30E-84 | 322.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20205.t1 | Q8QZZ7 | 32.3 | 161 | 105 | 2 | 13 | 171 | 17 | 175 | 1.7e-16 | 87.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20205.t1 | I3S9S0 | 98.8 | 171 | 2 | 0 | 1 | 171 | 1 | 171 | 9.2e-85 | 322.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06114 | MS.gene20205 | 0.894675 | 1.97E-75 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20205.t1 | MTR_8g099835 | 100.000 | 148 | 0 | 0 | 24 | 171 | 5 | 152 | 1.10e-105 | 299 |
| MS.gene20205.t1 | MTR_2g105210 | 75.610 | 123 | 21 | 1 | 46 | 168 | 3 | 116 | 8.08e-58 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20205.t1 | AT4G34412 | 72.674 | 172 | 46 | 1 | 1 | 171 | 1 | 172 | 2.04e-86 | 251 |
Find 38 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTCTTGCAGGGAACTAT+TGG | 0.280671 | 4.4:+4443612 | MS.gene20205:intron |
| TAAATACATAATTACATGTT+TGG | 0.329858 | 4.4:-4443995 | None:intergenic |
| GCTAGAACAGGGAAAATATC+TGG | 0.361800 | 4.4:-4443883 | None:intergenic |
| TCCAATGACGAGTTTCTCTA+TGG | 0.365136 | 4.4:-4444255 | None:intergenic |
| GAGAAAGACTAACTTTGAAT+TGG | 0.376103 | 4.4:-4442143 | None:intergenic |
| AAGATATCTGCCTTGGAACT+TGG | 0.384569 | 4.4:+4444416 | MS.gene20205:CDS |
| GCGTTGAGGAATGCAACTTC+TGG | 0.407224 | 4.4:-4443661 | None:intergenic |
| AAGCATGCAAGCTGGGACAT+TGG | 0.416752 | 4.4:+4443636 | MS.gene20205:CDS |
| CTCTCCCTTTCAGCTCCTCT+AGG | 0.421727 | 4.4:-4444289 | None:intergenic |
| TTGTGTGCAGCTGCTAGAAC+AGG | 0.422005 | 4.4:-4443895 | None:intergenic |
| ATTGATGTCGATGAGCTTCA+TGG | 0.431723 | 4.4:-4442083 | None:intergenic |
| GCCATAGAGAAACTCGTCAT+TGG | 0.436847 | 4.4:+4444254 | MS.gene20205:CDS |
| TAGAATCTTCTCACCTCATC+AGG | 0.444275 | 4.4:-4444158 | None:intergenic |
| AAGCATCACGAGCAGCTATT+CGG | 0.464580 | 4.4:-4444469 | None:intergenic |
| AAATCGAGCAGCAAGGATAT+AGG | 0.479316 | 4.4:-4444126 | None:intergenic |
| GCATTACAAGATATCTGCCT+TGG | 0.484266 | 4.4:+4444409 | MS.gene20205:intron |
| TTGACCTAGAGGAGCTGAAA+GGG | 0.500088 | 4.4:+4444285 | MS.gene20205:CDS |
| ATGAAGCTCATCGACATCAA+TGG | 0.515958 | 4.4:+4442085 | MS.gene20205:CDS |
| TATTGGAAAGCATGCAAGCT+GGG | 0.540353 | 4.4:+4443629 | MS.gene20205:CDS |
| CTATTGGAAAGCATGCAAGC+TGG | 0.542148 | 4.4:+4443628 | MS.gene20205:CDS |
| AAACCTGCCCCAGATACAAA+AGG | 0.559565 | 4.4:+4444313 | MS.gene20205:CDS |
| GGTCAAAGAGTCCCGTGACT+TGG | 0.561465 | 4.4:-4443929 | None:intergenic |
| GAGCTCGTTTACAACTACTC+AGG | 0.561880 | 4.4:+4443970 | MS.gene20205:CDS |
| GACACTTGTAACCAAGTCAC+GGG | 0.585819 | 4.4:+4443918 | MS.gene20205:CDS |
| TGAGTAGTTGTAAACGAGCT+CGG | 0.589663 | 4.4:-4443968 | None:intergenic |
| ATTGACCTAGAGGAGCTGAA+AGG | 0.592410 | 4.4:+4444284 | MS.gene20205:CDS |
| TGATGATATTCCAAGTTCCA+AGG | 0.603203 | 4.4:-4444426 | None:intergenic |
| TGGAAAAGAGATTGACCTAG+AGG | 0.624141 | 4.4:+4444274 | MS.gene20205:CDS |
| AATTGGTGACGTCTGTGTAG+AGG | 0.624172 | 4.4:-4442126 | None:intergenic |
| AGACACTTGTAACCAAGTCA+CGG | 0.624915 | 4.4:+4443917 | MS.gene20205:CDS |
| ATTATACAAGTGAAGCGTTG+AGG | 0.626795 | 4.4:-4443675 | None:intergenic |
| AGCTCGTTTACAACTACTCA+GGG | 0.627963 | 4.4:+4443971 | MS.gene20205:CDS |
| ATTGGTGACGTCTGTGTAGA+GGG | 0.634042 | 4.4:-4442125 | None:intergenic |
| CTCGGAATGAAGAGTGCGTG+TGG | 0.636758 | 4.4:-4443950 | None:intergenic |
| ATTTGATGCTACTCCTGATG+AGG | 0.656826 | 4.4:+4444145 | MS.gene20205:CDS |
| TGTGTGCAGCTGCTAGAACA+GGG | 0.668610 | 4.4:-4443894 | None:intergenic |
| TAGCATCAAATCGAGCAGCA+AGG | 0.669820 | 4.4:-4444133 | None:intergenic |
| GTAGAGGGAGAGACAGAGAG+TGG | 0.695759 | 4.4:-4442110 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGATAATTAACTTAAAA+CGG | - | chr4.4:4442340-4442359 | None:intergenic | 10.0% |
| !! | TATTTATATTTAACCTATTA+TGG | + | chr4.4:4444012-4444031 | MS.gene20205:intron | 10.0% |
| !! | AAAAAATAAAAAATTGGGTT+TGG | - | chr4.4:4442917-4442936 | None:intergenic | 15.0% |
| !! | AATGATAATTAACTTAAAAC+GGG | - | chr4.4:4442339-4442358 | None:intergenic | 15.0% |
| !! | TAAATACATAATTACATGTT+TGG | - | chr4.4:4443998-4444017 | None:intergenic | 15.0% |
| !!! | GAGAAAATGATAATTTTTAT+AGG | - | chr4.4:4442211-4442230 | None:intergenic | 15.0% |
| !!! | TGACAGTTTTAAAAATATTA+AGG | - | chr4.4:4443038-4443057 | None:intergenic | 15.0% |
| !! | AAATTATTGAATATGCTAGT+TGG | - | chr4.4:4444378-4444397 | None:intergenic | 20.0% |
| !! | ATAAGAGCAATATATGAATT+TGG | + | chr4.4:4442385-4442404 | MS.gene20205:intron | 20.0% |
| !! | TATGATTGATCCATAAAATT+AGG | + | chr4.4:4443556-4443575 | MS.gene20205:intron | 20.0% |
| !! | TGTAATTGATCCATAAAATT+AGG | + | chr4.4:4443510-4443529 | MS.gene20205:intron | 20.0% |
| !!! | GTATATCTACTTTTATAGAT+TGG | - | chr4.4:4443458-4443477 | None:intergenic | 20.0% |
| ! | ACACTATAAATAAGAGATCA+TGG | + | chr4.4:4442551-4442570 | MS.gene20205:intron | 25.0% |
| ! | ATGTTCTATTGTTATACTTG+TGG | - | chr4.4:4442755-4442774 | None:intergenic | 25.0% |
| ! | CTGAAATTAGAAACTTTAAC+TGG | - | chr4.4:4444047-4444066 | None:intergenic | 25.0% |
| ! | GAAGATTCTACAGTAAAATA+TGG | + | chr4.4:4444171-4444190 | MS.gene20205:intron | 25.0% |
| ! | GTACTCTTACACTTTAAATT+TGG | - | chr4.4:4442434-4442453 | None:intergenic | 25.0% |
| ! | TATAAATAAGAGATCATGGA+TGG | + | chr4.4:4442555-4442574 | MS.gene20205:intron | 25.0% |
| ! | TATATGTAACTATGCAACAT+AGG | + | chr4.4:4443067-4443086 | MS.gene20205:intron | 25.0% |
| ! | TCATAACTATTCACAACATT+TGG | + | chr4.4:4443320-4443339 | MS.gene20205:intron | 25.0% |
| !! | ACTGAATCTTTAAAAAGATG+TGG | + | chr4.4:4444086-4444105 | MS.gene20205:CDS | 25.0% |
| !! | ATGATCTCTTATTTATAGTG+TGG | - | chr4.4:4442552-4442571 | None:intergenic | 25.0% |
| !!! | GTAATATTTTCAAGTGTTAG+TGG | + | chr4.4:4442478-4442497 | MS.gene20205:intron | 25.0% |
| AGATCCTCTATAATTGAATG+TGG | - | chr4.4:4443710-4443729 | None:intergenic | 30.0% | |
| ATAACATGATCCTCTTATGT+TGG | + | chr4.4:4443755-4443774 | MS.gene20205:intron | 30.0% | |
| ATGTAACTATGTTTCTTGCA+GGG | + | chr4.4:4443603-4443622 | MS.gene20205:intron | 30.0% | |
| CAATTCACAAGAGAATATGT+AGG | + | chr4.4:4442603-4442622 | MS.gene20205:intron | 30.0% | |
| CACTAGTAAAAAGAAGCAAA+TGG | - | chr4.4:4443297-4443316 | None:intergenic | 30.0% | |
| CACTCAATAGCAATATATGA+TGG | - | chr4.4:4443217-4443236 | None:intergenic | 30.0% | |
| CTACATATTCTCTTGTGAAT+TGG | - | chr4.4:4442605-4442624 | None:intergenic | 30.0% | |
| GAGAAAGACTAACTTTGAAT+TGG | - | chr4.4:4442146-4442165 | None:intergenic | 30.0% | |
| GATCCTCTATAATTGAATGT+GGG | - | chr4.4:4443709-4443728 | None:intergenic | 30.0% | |
| GATGAGAAACACTTAATTCT+CGG | - | chr4.4:4442317-4442336 | None:intergenic | 30.0% | |
| GGAGAAATTATAGGAACATT+TGG | + | chr4.4:4442504-4442523 | MS.gene20205:intron | 30.0% | |
| TATACTTGTGGTAAGTACAA+GGG | - | chr4.4:4442743-4442762 | None:intergenic | 30.0% | |
| TATGTAACTATGTTTCTTGC+AGG | + | chr4.4:4443602-4443621 | MS.gene20205:intron | 30.0% | |
| TTATACTTGTGGTAAGTACA+AGG | - | chr4.4:4442744-4442763 | None:intergenic | 30.0% | |
| !!! | AACTGACTTTTGAGATTAAG+TGG | - | chr4.4:4443250-4443269 | None:intergenic | 30.0% |
| !!! | ACTTTTTCACTTCTTTGGTA+TGG | + | chr4.4:4443147-4443166 | MS.gene20205:intron | 30.0% |
| !!! | TCAACACTTTTTCACTTCTT+TGG | + | chr4.4:4443142-4443161 | MS.gene20205:intron | 30.0% |
| ACATAGGATAACTATCAACG+AGG | + | chr4.4:4443083-4443102 | MS.gene20205:intron | 35.0% | |
| ACGATGTCAAGTAAGTTCTT+TGG | - | chr4.4:4442460-4442479 | None:intergenic | 35.0% | |
| CAGATACAAAAGGTTTGTCA+GGG | + | chr4.4:4444323-4444342 | MS.gene20205:intron | 35.0% | |
| TATGCTAGTTGGCACAAAAA+AGG | - | chr4.4:4444367-4444386 | None:intergenic | 35.0% | |
| TATTCACAACATTTGGTTGC+TGG | + | chr4.4:4443327-4443346 | MS.gene20205:intron | 35.0% | |
| TCTCTCATTACCAACATAAG+AGG | - | chr4.4:4443768-4443787 | None:intergenic | 35.0% | |
| TGACCCACATTCAATTATAG+AGG | + | chr4.4:4443703-4443722 | MS.gene20205:intron | 35.0% | |
| TGATGATATTCCAAGTTCCA+AGG | - | chr4.4:4444429-4444448 | None:intergenic | 35.0% | |
| TTATAGTGTGGAGAGTTAGT+GGG | - | chr4.4:4442540-4442559 | None:intergenic | 35.0% | |
| TTTATAGTGTGGAGAGTTAG+TGG | - | chr4.4:4442541-4442560 | None:intergenic | 35.0% | |
| ! | AAGTCTTATCCCACTAAATG+GGG | - | chr4.4:4442806-4442825 | None:intergenic | 35.0% |
| ! | CAAGTCTTATCCCACTAAAT+GGG | - | chr4.4:4442807-4442826 | None:intergenic | 35.0% |
| ! | CTGACAAACCTTTTGTATCT+GGG | - | chr4.4:4444324-4444343 | None:intergenic | 35.0% |
| ! | TGACAAACCTTTTGTATCTG+GGG | - | chr4.4:4444323-4444342 | None:intergenic | 35.0% |
| ! | TTATCATTTTCTCTTACCGC+CGG | + | chr4.4:4442218-4442237 | MS.gene20205:intron | 35.0% |
| !! | AGAGCTGGTTCCTAATTTTA+TGG | - | chr4.4:4443523-4443542 | None:intergenic | 35.0% |
| !! | ATTATACAAGTGAAGCGTTG+AGG | - | chr4.4:4443678-4443697 | None:intergenic | 35.0% |
| !! | TAGTGGACTGGAGAAATTAT+AGG | + | chr4.4:4442495-4442514 | MS.gene20205:intron | 35.0% |
| !!! | AAGTGTGTGCTTGTTTTTAG+TGG | + | chr4.4:4443191-4443210 | MS.gene20205:intron | 35.0% |
| !!! | ATTTTCAAGTGTTAGTGGAC+TGG | + | chr4.4:4442483-4442502 | MS.gene20205:intron | 35.0% |
| !!! | ATTTTGATTGTAGTGCGACA+GGG | - | chr4.4:4442640-4442659 | None:intergenic | 35.0% |
| !!! | GTTGCTTTGCATTTTTAGTC+CGG | + | chr4.4:4442272-4442291 | MS.gene20205:intron | 35.0% |
| !!! | TATTTTGATTGTAGTGCGAC+AGG | - | chr4.4:4442641-4442660 | None:intergenic | 35.0% |
| AAATCGAGCAGCAAGGATAT+AGG | - | chr4.4:4444129-4444148 | None:intergenic | 40.0% | |
| AAGATATCTGCCTTGGAACT+TGG | + | chr4.4:4444416-4444435 | MS.gene20205:CDS | 40.0% | |
| ACAAGAGAATATGTAGGACG+AGG | + | chr4.4:4442609-4442628 | MS.gene20205:intron | 40.0% | |
| ACTGAAGCAATACAGTAAGC+CGG | - | chr4.4:4442240-4442259 | None:intergenic | 40.0% | |
| ACTTAATTCTCGGTCAGGAT+TGG | - | chr4.4:4442307-4442326 | None:intergenic | 40.0% | |
| ACTTCTTTGGTATGGCACTA+TGG | + | chr4.4:4443155-4443174 | MS.gene20205:intron | 40.0% | |
| AGACACTTGTAACCAAGTCA+CGG | + | chr4.4:4443917-4443936 | MS.gene20205:CDS | 40.0% | |
| AGCTCGTTTACAACTACTCA+GGG | + | chr4.4:4443971-4443990 | MS.gene20205:CDS | 40.0% | |
| ATGAAGCTCATCGACATCAA+TGG | + | chr4.4:4442085-4442104 | MS.gene20205:CDS | 40.0% | |
| ATTTGATGCTACTCCTGATG+AGG | + | chr4.4:4444145-4444164 | MS.gene20205:CDS | 40.0% | |
| CAAGAGAATATGTAGGACGA+GGG | + | chr4.4:4442610-4442629 | MS.gene20205:intron | 40.0% | |
| CCAGATACAAAAGGTTTGTC+AGG | + | chr4.4:4444322-4444341 | MS.gene20205:intron | 40.0% | |
| CCATCTTGATTAGGAGGAAT+CGG | - | chr4.4:4443399-4443418 | None:intergenic | 40.0% | |
| CCATTTAGTGGGATAAGACT+TGG | + | chr4.4:4442805-4442824 | MS.gene20205:intron | 40.0% | |
| CTGGAAATGCGAACCATAAT+AGG | - | chr4.4:4444028-4444047 | None:intergenic | 40.0% | |
| GAAACACTTAATTCTCGGTC+AGG | - | chr4.4:4442312-4442331 | None:intergenic | 40.0% | |
| GAGAGAATCTGAATGATGCT+AGG | + | chr4.4:4443782-4443801 | MS.gene20205:intron | 40.0% | |
| GCATTACAAGATATCTGCCT+TGG | + | chr4.4:4444409-4444428 | MS.gene20205:intron | 40.0% | |
| GCTAGAACAGGGAAAATATC+TGG | - | chr4.4:4443886-4443905 | None:intergenic | 40.0% | |
| TAAACACTTCAGCTAAGAGC+TGG | - | chr4.4:4443538-4443557 | None:intergenic | 40.0% | |
| TAGAATCTTCTCACCTCATC+AGG | - | chr4.4:4444161-4444180 | None:intergenic | 40.0% | |
| TCCAATGACGAGTTTCTCTA+TGG | - | chr4.4:4444258-4444277 | None:intergenic | 40.0% | |
| TGAGTAGTTGTAAACGAGCT+CGG | - | chr4.4:4443971-4443990 | None:intergenic | 40.0% | |
| TGGAAAAGAGATTGACCTAG+AGG | + | chr4.4:4444274-4444293 | MS.gene20205:CDS | 40.0% | |
| TGGTATGGCACTATGGTAAA+TGG | + | chr4.4:4443162-4443181 | MS.gene20205:intron | 40.0% | |
| TGTTTCTTGCAGGGAACTAT+TGG | + | chr4.4:4443612-4443631 | MS.gene20205:intron | 40.0% | |
| TTGCAATCGCCATCTTGATT+AGG | - | chr4.4:4443408-4443427 | None:intergenic | 40.0% | |
| ! | CAGGGAAAATATCTGGAATC+TGG | - | chr4.4:4443879-4443898 | None:intergenic | 40.0% |
| ! | CCAAGTCTTATCCCACTAAA+TGG | - | chr4.4:4442808-4442827 | None:intergenic | 40.0% |
| ! | CCTGACAAACCTTTTGTATC+TGG | - | chr4.4:4444325-4444344 | None:intergenic | 40.0% |
| ! | TATTGGAAAGCATGCAAGCT+GGG | + | chr4.4:4443629-4443648 | MS.gene20205:CDS | 40.0% |
| !!! | TTTGCATTTTTAGTCCGGAC+TGG | + | chr4.4:4442277-4442296 | MS.gene20205:intron | 40.0% |
| AAACCTGCCCCAGATACAAA+AGG | + | chr4.4:4444313-4444332 | MS.gene20205:CDS | 45.0% | |
| AAGCATCACGAGCAGCTATT+CGG | - | chr4.4:4444472-4444491 | None:intergenic | 45.0% | |
| ATGTAGCCAACCCCATTTAG+TGG | + | chr4.4:4442793-4442812 | MS.gene20205:intron | 45.0% | |
| ATTGACCTAGAGGAGCTGAA+AGG | + | chr4.4:4444284-4444303 | MS.gene20205:CDS | 45.0% | |
| CAATCGCCATCTTGATTAGG+AGG | - | chr4.4:4443405-4443424 | None:intergenic | 45.0% | |
| CCGATTCCTCCTAATCAAGA+TGG | + | chr4.4:4443396-4443415 | MS.gene20205:intron | 45.0% | |
| CTCTTGTGAATTGGCGATGT+GGG | - | chr4.4:4442596-4442615 | None:intergenic | 45.0% | |
| CTTATCCCACTAAATGGGGT+TGG | - | chr4.4:4442802-4442821 | None:intergenic | 45.0% | |
| GACACTTGTAACCAAGTCAC+GGG | + | chr4.4:4443918-4443937 | MS.gene20205:CDS | 45.0% | |
| GAGCTCGTTTACAACTACTC+AGG | + | chr4.4:4443970-4443989 | MS.gene20205:CDS | 45.0% | |
| GCCATAGAGAAACTCGTCAT+TGG | + | chr4.4:4444254-4444273 | MS.gene20205:CDS | 45.0% | |
| TAGCATCAAATCGAGCAGCA+AGG | - | chr4.4:4444136-4444155 | None:intergenic | 45.0% | |
| TCTCTTGTGAATTGGCGATG+TGG | - | chr4.4:4442597-4442616 | None:intergenic | 45.0% | |
| TCTTGTGAATTGGCGATGTG+GGG | - | chr4.4:4442595-4442614 | None:intergenic | 45.0% | |
| TGTAGCCAACCCCATTTAGT+GGG | + | chr4.4:4442794-4442813 | MS.gene20205:intron | 45.0% | |
| TTGACCTAGAGGAGCTGAAA+GGG | + | chr4.4:4444285-4444304 | MS.gene20205:CDS | 45.0% | |
| ! | CTATTGGAAAGCATGCAAGC+TGG | + | chr4.4:4443628-4443647 | MS.gene20205:CDS | 45.0% |
| ! | GCTTTGAGCTAAAGGGATCT+TGG | - | chr4.4:4442687-4442706 | None:intergenic | 45.0% |
| !! | AAACCTTTTGTATCTGGGGC+AGG | - | chr4.4:4444319-4444338 | None:intergenic | 45.0% |
| !! | AATTGGTGACGTCTGTGTAG+AGG | - | chr4.4:4442129-4442148 | None:intergenic | 45.0% |
| !! | ATTGGTGACGTCTGTGTAGA+GGG | - | chr4.4:4442128-4442147 | None:intergenic | 45.0% |
| !! | GAGAGGAGCTTTGAGCTAAA+GGG | - | chr4.4:4442694-4442713 | None:intergenic | 45.0% |
| !! | TGAGAGGAGCTTTGAGCTAA+AGG | - | chr4.4:4442695-4442714 | None:intergenic | 45.0% |
| !! | AAGTTTAAAAAATAAAAAAT+TGG | - | chr4.4:4442923-4442942 | None:intergenic | 5.0% |
| !! | AGTTTAAAAAATAAAAAATT+GGG | - | chr4.4:4442922-4442941 | None:intergenic | 5.0% |
| AAAGCTCCTCTCACCACCAA+GGG | + | chr4.4:4442702-4442721 | MS.gene20205:intron | 50.0% | |
| AAGCATGCAAGCTGGGACAT+TGG | + | chr4.4:4443636-4443655 | MS.gene20205:CDS | 50.0% | |
| CAGCAATGAGCAGTAAGGTC+GGG | - | chr4.4:4442664-4442683 | None:intergenic | 50.0% | |
| CTTGGCAGCAATGAGCAGTA+AGG | - | chr4.4:4442669-4442688 | None:intergenic | 50.0% | |
| GAAGCAATACAGTAAGCCGG+CGG | - | chr4.4:4442237-4442256 | None:intergenic | 50.0% | |
| GCAGCAATGAGCAGTAAGGT+CGG | - | chr4.4:4442665-4442684 | None:intergenic | 50.0% | |
| GCGTTGAGGAATGCAACTTC+TGG | - | chr4.4:4443664-4443683 | None:intergenic | 50.0% | |
| TCTGGTGCAGTTGAGAACAG+TGG | - | chr4.4:4443861-4443880 | None:intergenic | 50.0% | |
| TGTGTGCAGCTGCTAGAACA+GGG | - | chr4.4:4443897-4443916 | None:intergenic | 50.0% | |
| TTGATTGTAGTGCGACAGGG+AGG | - | chr4.4:4442637-4442656 | None:intergenic | 50.0% | |
| TTGTGTGCAGCTGCTAGAAC+AGG | - | chr4.4:4443898-4443917 | None:intergenic | 50.0% | |
| ! | AATTCTCGGTCAGGATTGGC+CGG | - | chr4.4:4442303-4442322 | None:intergenic | 50.0% |
| !!! | CATTTTTAGTCCGGACTGGC+CGG | + | chr4.4:4442281-4442300 | MS.gene20205:intron | 50.0% |
| AAGCTCCTCTCACCACCAAG+GGG | + | chr4.4:4442703-4442722 | MS.gene20205:intron | 55.0% | |
| CAAAGCTCCTCTCACCACCA+AGG | + | chr4.4:4442701-4442720 | MS.gene20205:intron | 55.0% | |
| CTCTCCCTTTCAGCTCCTCT+AGG | - | chr4.4:4444292-4444311 | None:intergenic | 55.0% | |
| GAGAGTTAGTGGGAGTGGTG+AGG | - | chr4.4:4442530-4442549 | None:intergenic | 55.0% | |
| GGTCAAAGAGTCCCGTGACT+TGG | - | chr4.4:4443932-4443951 | None:intergenic | 55.0% | |
| GTAGAGGGAGAGACAGAGAG+TGG | - | chr4.4:4442113-4442132 | None:intergenic | 55.0% | |
| GTGTGGAGAGTTAGTGGGAG+TGG | - | chr4.4:4442535-4442554 | None:intergenic | 55.0% | |
| ! | CTCGGAATGAAGAGTGCGTG+TGG | - | chr4.4:4443953-4443972 | None:intergenic | 55.0% |
| AGCTCCTCTCACCACCAAGG+GGG | + | chr4.4:4442704-4442723 | MS.gene20205:intron | 60.0% | |
| CCTCTCACCACCAAGGGGGA+GGG | + | chr4.4:4442708-4442727 | MS.gene20205:intron | 65.0% | |
| CTCTCACCACCAAGGGGGAG+GGG | + | chr4.4:4442709-4442728 | MS.gene20205:intron | 65.0% | |
| TCCTCTCACCACCAAGGGGG+AGG | + | chr4.4:4442707-4442726 | MS.gene20205:intron | 65.0% | |
| TCTCACCACCAAGGGGGAGG+GGG | + | chr4.4:4442710-4442729 | MS.gene20205:intron | 65.0% | |
| !! | TCAGGATTGGCCGGCCAGTC+CGG | - | chr4.4:4442294-4442313 | None:intergenic | 65.0% |
| CTCACCACCAAGGGGGAGGG+GGG | + | chr4.4:4442711-4442730 | MS.gene20205:intron | 70.0% | |
| !! | CCCTCCCCCTTGGTGGTGAG+AGG | - | chr4.4:4442711-4442730 | None:intergenic | 70.0% |
| TCGACCCCCCTCCCCCTTGG+TGG | - | chr4.4:4442718-4442737 | None:intergenic | 75.0% | |
| ! | GCATCGACCCCCCTCCCCCT+TGG | - | chr4.4:4442721-4442740 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 4442085 | 4444496 | 4442085 | ID=MS.gene20205 |
| chr4.4 | mRNA | 4442085 | 4444496 | 4442085 | ID=MS.gene20205.t1;Parent=MS.gene20205 |
| chr4.4 | exon | 4442085 | 4442152 | 4442085 | ID=MS.gene20205.t1.exon1;Parent=MS.gene20205.t1 |
| chr4.4 | CDS | 4442085 | 4442152 | 4442085 | ID=cds.MS.gene20205.t1;Parent=MS.gene20205.t1 |
| chr4.4 | exon | 4443624 | 4443690 | 4443624 | ID=MS.gene20205.t1.exon2;Parent=MS.gene20205.t1 |
| chr4.4 | CDS | 4443624 | 4443690 | 4443624 | ID=cds.MS.gene20205.t1;Parent=MS.gene20205.t1 |
| chr4.4 | exon | 4443880 | 4444002 | 4443880 | ID=MS.gene20205.t1.exon3;Parent=MS.gene20205.t1 |
| chr4.4 | CDS | 4443880 | 4444002 | 4443880 | ID=cds.MS.gene20205.t1;Parent=MS.gene20205.t1 |
| chr4.4 | exon | 4444083 | 4444166 | 4444083 | ID=MS.gene20205.t1.exon4;Parent=MS.gene20205.t1 |
| chr4.4 | CDS | 4444083 | 4444166 | 4444083 | ID=cds.MS.gene20205.t1;Parent=MS.gene20205.t1 |
| chr4.4 | exon | 4444248 | 4444334 | 4444248 | ID=MS.gene20205.t1.exon5;Parent=MS.gene20205.t1 |
| chr4.4 | CDS | 4444248 | 4444334 | 4444248 | ID=cds.MS.gene20205.t1;Parent=MS.gene20205.t1 |
| chr4.4 | exon | 4444410 | 4444496 | 4444410 | ID=MS.gene20205.t1.exon6;Parent=MS.gene20205.t1 |
| chr4.4 | CDS | 4444410 | 4444496 | 4444410 | ID=cds.MS.gene20205.t1;Parent=MS.gene20205.t1 |
| Gene Sequence |
| Protein sequence |
