Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06114.t1 | XP_024628370.1 | 98.3 | 172 | 2 | 1 | 1 | 172 | 1 | 171 | 3.10E-83 | 317.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06114.t1 | Q8QZZ7 | 32.3 | 161 | 105 | 2 | 14 | 172 | 17 | 175 | 2.2e-16 | 87.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06114.t1 | I3S9S0 | 98.3 | 172 | 2 | 1 | 1 | 172 | 1 | 171 | 2.3e-83 | 317.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050438 | MS.gene06114 | 0.806113 | 9.63E-50 | -1.69E-46 |
| MS.gene06114 | MS.gene072671 | 0.803913 | 2.78E-49 | -1.69E-46 |
| MS.gene06114 | MS.gene20205 | 0.894675 | 1.97E-75 | -1.69E-46 |
| MS.gene06114 | MS.gene23173 | 0.803384 | 3.58E-49 | -1.69E-46 |
| MS.gene06114 | MS.gene23642 | 0.805964 | 1.03E-49 | -1.69E-46 |
| MS.gene06114 | MS.gene36143 | 0.821229 | 4.51E-53 | -1.69E-46 |
| MS.gene06114 | MS.gene53200 | 0.803595 | 3.23E-49 | -1.69E-46 |
| MS.gene06114 | MS.gene55833 | 0.944204 | 3.00E-103 | -1.69E-46 |
| MS.gene06114 | MS.gene59769 | 0.803494 | 3.39E-49 | -1.69E-46 |
| MS.gene06114 | MS.gene78659 | 0.809434 | 1.90E-50 | -1.69E-46 |
| MS.gene06114 | MS.gene89671 | 0.802223 | 6.21E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06114.t1 | MTR_8g099835 | 100.000 | 148 | 0 | 0 | 25 | 172 | 5 | 152 | 1.46e-105 | 299 |
| MS.gene06114.t1 | MTR_2g105210 | 75.610 | 123 | 21 | 1 | 47 | 169 | 3 | 116 | 9.16e-58 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06114.t1 | AT4G34412 | 72.674 | 172 | 47 | 0 | 1 | 172 | 1 | 172 | 1.70e-86 | 251 |
Find 38 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTCTTGCAGGGAACTAT+TGG | 0.280671 | 4.2:+3977046 | MS.gene06114:intron |
| TAAATACATAATTACATGTT+TGG | 0.329858 | 4.2:-3977430 | None:intergenic |
| GCTAGAACAGGGAAAATATC+TGG | 0.361800 | 4.2:-3977318 | None:intergenic |
| TCCAATGACGAGTTTCTCTA+TGG | 0.365136 | 4.2:-3977690 | None:intergenic |
| GAGAAAGACTAACTTTGAAT+TGG | 0.376103 | 4.2:-3975635 | None:intergenic |
| AAGATATCTGCCTTGGAACT+TGG | 0.384569 | 4.2:+3977851 | MS.gene06114:CDS |
| GCGTTGAGGAATGCAACTTC+TGG | 0.407224 | 4.2:-3977095 | None:intergenic |
| AAGCATGCAAGCTGGGACAT+TGG | 0.416752 | 4.2:+3977070 | MS.gene06114:CDS |
| CTCTCCCTTTCAGCTCCTCT+AGG | 0.421727 | 4.2:-3977724 | None:intergenic |
| TTGTGTGCAGCTGCTAGAAC+AGG | 0.422005 | 4.2:-3977330 | None:intergenic |
| GCCATAGAGAAACTCGTCAT+TGG | 0.436847 | 4.2:+3977689 | MS.gene06114:CDS |
| TAGAATCTTCTCACCTCATC+AGG | 0.444275 | 4.2:-3977593 | None:intergenic |
| AAGCATCACGAGCAGCTATT+CGG | 0.464580 | 4.2:-3977904 | None:intergenic |
| AAATCGAGCAGCAAGGATAT+AGG | 0.479316 | 4.2:-3977561 | None:intergenic |
| GCATTACAAGATATCTGCCT+TGG | 0.484266 | 4.2:+3977844 | MS.gene06114:intron |
| AAGCTCATCGACGACATCAA+TGG | 0.499776 | 4.2:+3975577 | MS.gene06114:CDS |
| TTGACCTAGAGGAGCTGAAA+GGG | 0.500088 | 4.2:+3977720 | MS.gene06114:CDS |
| GATGTCGTCGATGAGCTTCA+TGG | 0.510473 | 4.2:-3975572 | None:intergenic |
| TATTGGAAAGCATGCAAGCT+GGG | 0.540353 | 4.2:+3977063 | MS.gene06114:CDS |
| CTATTGGAAAGCATGCAAGC+TGG | 0.542148 | 4.2:+3977062 | MS.gene06114:CDS |
| AAACCTGCCCCAGATACAAA+AGG | 0.559565 | 4.2:+3977748 | MS.gene06114:CDS |
| GGTCAAAGAGTCCCGTGACT+TGG | 0.561465 | 4.2:-3977364 | None:intergenic |
| GAGCTCGTTTACAACTACTC+AGG | 0.561880 | 4.2:+3977405 | MS.gene06114:CDS |
| GACACTTGTAACCAAGTCAC+GGG | 0.585819 | 4.2:+3977353 | MS.gene06114:CDS |
| TGAGTAGTTGTAAACGAGCT+CGG | 0.589663 | 4.2:-3977403 | None:intergenic |
| ATTGACCTAGAGGAGCTGAA+AGG | 0.592410 | 4.2:+3977719 | MS.gene06114:CDS |
| TGATGATATTCCAAGTTCCA+AGG | 0.603203 | 4.2:-3977861 | None:intergenic |
| TGGAAAAGAGATTGACCTAG+AGG | 0.624141 | 4.2:+3977709 | MS.gene06114:CDS |
| AATTGGTGACGTCTGTGTAG+AGG | 0.624172 | 4.2:-3975618 | None:intergenic |
| AGACACTTGTAACCAAGTCA+CGG | 0.624915 | 4.2:+3977352 | MS.gene06114:CDS |
| ATTATACAAGTGAAGCGTTG+AGG | 0.626795 | 4.2:-3977109 | None:intergenic |
| AGCTCGTTTACAACTACTCA+GGG | 0.627963 | 4.2:+3977406 | MS.gene06114:CDS |
| ATTGGTGACGTCTGTGTAGA+GGG | 0.634042 | 4.2:-3975617 | None:intergenic |
| CTCGGAATGAAGAGTGCGTG+TGG | 0.636758 | 4.2:-3977385 | None:intergenic |
| ATTTGATGCTACTCCTGATG+AGG | 0.656826 | 4.2:+3977580 | MS.gene06114:CDS |
| TGTGTGCAGCTGCTAGAACA+GGG | 0.668610 | 4.2:-3977329 | None:intergenic |
| TAGCATCAAATCGAGCAGCA+AGG | 0.669820 | 4.2:-3977568 | None:intergenic |
| GTAGAGGGAGAGACAGAGAG+TGG | 0.695759 | 4.2:-3975602 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATTAACTTAAAAC+GGG | - | chr4.2:3975831-3975850 | None:intergenic | 10.0% |
| !!! | TATTTATATTTAACTTGTTA+TGG | + | chr4.2:3977447-3977466 | MS.gene06114:intron | 10.0% |
| !! | AAAAAATAAAAAATTGGGTT+TGG | - | chr4.2:3976395-3976414 | None:intergenic | 15.0% |
| !! | TAAATACATAATTACATGTT+TGG | - | chr4.2:3977433-3977452 | None:intergenic | 15.0% |
| !!! | GAGAAAATGATAATTTTTAT+AGG | - | chr4.2:3975703-3975722 | None:intergenic | 15.0% |
| !! | AAATTATTGAATATGCTAGT+TGG | - | chr4.2:3977813-3977832 | None:intergenic | 20.0% |
| !! | ATAAGAGCAATATATGAATT+TGG | + | chr4.2:3975886-3975905 | MS.gene06114:intron | 20.0% |
| !! | TCAAGTAAGTTCTTTAAATT+TGG | - | chr4.2:3975935-3975954 | None:intergenic | 20.0% |
| !! | TGACAGTTTGAAAAATATTA+AGG | - | chr4.2:3976516-3976535 | None:intergenic | 20.0% |
| !! | TGTAATTGATCCATAAAATT+AGG | + | chr4.2:3976990-3977009 | MS.gene06114:intron | 20.0% |
| !!! | GTATATCTACTTTTATAGAT+TGG | - | chr4.2:3976938-3976957 | None:intergenic | 20.0% |
| ! | ATGTTCTATTGTTATACTTG+TGG | - | chr4.2:3976235-3976254 | None:intergenic | 25.0% |
| ! | CTGAAATTAGAAACTTTAAC+TGG | - | chr4.2:3977482-3977501 | None:intergenic | 25.0% |
| ! | GAAGATTCTACAGTAAAATA+TGG | + | chr4.2:3977606-3977625 | MS.gene06114:intron | 25.0% |
| ! | TATATGTAACTATGCAACAT+AGG | + | chr4.2:3976548-3976567 | MS.gene06114:intron | 25.0% |
| !! | ACTGAATCTTTAAAAAGATG+TGG | + | chr4.2:3977521-3977540 | MS.gene06114:CDS | 25.0% |
| !!! | GTAATATTTTCAAGTGTTAG+TGG | + | chr4.2:3975959-3975978 | MS.gene06114:intron | 25.0% |
| ACACTATAAATAAGAGCTCA+TGG | + | chr4.2:3976032-3976051 | MS.gene06114:intron | 30.0% | |
| ACTATGGTAAATGGTTATCA+GGG | + | chr4.2:3976652-3976671 | MS.gene06114:intron | 30.0% | |
| AGATCCTCTATAATTGAATG+TGG | - | chr4.2:3977145-3977164 | None:intergenic | 30.0% | |
| ATAACATGATCCTCTTATGT+CGG | + | chr4.2:3977190-3977209 | MS.gene06114:intron | 30.0% | |
| ATGTAACTATGTTTCTTGCA+GGG | + | chr4.2:3977037-3977056 | MS.gene06114:intron | 30.0% | |
| CAATTCACAAGAGAATATGT+AGG | + | chr4.2:3976084-3976103 | MS.gene06114:intron | 30.0% | |
| CACTCAATAGCAATATTTGA+TGG | - | chr4.2:3976698-3976717 | None:intergenic | 30.0% | |
| CCAAATGTTGTGAATAGTTA+TGG | - | chr4.2:3976804-3976823 | None:intergenic | 30.0% | |
| CCATAACTATTCACAACATT+TGG | + | chr4.2:3976801-3976820 | MS.gene06114:intron | 30.0% | |
| CTACATATTCTCTTGTGAAT+TGG | - | chr4.2:3976086-3976105 | None:intergenic | 30.0% | |
| GAGAAAGACTAACTTTGAAT+TGG | - | chr4.2:3975638-3975657 | None:intergenic | 30.0% | |
| GATCCTCTATAATTGAATGT+GGG | - | chr4.2:3977144-3977163 | None:intergenic | 30.0% | |
| GATGAGAAACACTTAATTCT+CGG | - | chr4.2:3975809-3975828 | None:intergenic | 30.0% | |
| GGAGAAATTATAGGAACATT+TGG | + | chr4.2:3975985-3976004 | MS.gene06114:intron | 30.0% | |
| TATAAATAAGAGCTCATGGA+TGG | + | chr4.2:3976036-3976055 | MS.gene06114:intron | 30.0% | |
| TATACTTGTGGTAAGTACAA+GGG | - | chr4.2:3976223-3976242 | None:intergenic | 30.0% | |
| TATGTAACTATGTTTCTTGC+AGG | + | chr4.2:3977036-3977055 | MS.gene06114:intron | 30.0% | |
| TTATACTTGTGGTAAGTACA+AGG | - | chr4.2:3976224-3976243 | None:intergenic | 30.0% | |
| ! | ATGAGCTCTTATTTATAGTG+TGG | - | chr4.2:3976033-3976052 | None:intergenic | 30.0% |
| !!! | AACTGACTTTTGAGATTAAG+TGG | - | chr4.2:3976731-3976750 | None:intergenic | 30.0% |
| !!! | ACTTTTTCACTTCTTTGGTA+TGG | + | chr4.2:3976628-3976647 | MS.gene06114:intron | 30.0% |
| !!! | TCAACACTTTTTCACTTCTT+TGG | + | chr4.2:3976623-3976642 | MS.gene06114:intron | 30.0% |
| ACATAGGATAACTATCAACG+AGG | + | chr4.2:3976564-3976583 | MS.gene06114:intron | 35.0% | |
| ACTGAAGCAATAAAGTAAGC+CGG | - | chr4.2:3975732-3975751 | None:intergenic | 35.0% | |
| ATACAAGTCCTAGCATCATT+CGG | - | chr4.2:3977228-3977247 | None:intergenic | 35.0% | |
| ATGTAGCTAATCCCATTTAG+TGG | + | chr4.2:3976273-3976292 | MS.gene06114:intron | 35.0% | |
| CACTATGGTAAATGGTTATC+AGG | + | chr4.2:3976651-3976670 | MS.gene06114:intron | 35.0% | |
| CAGATACAAAAGGTTTGTCA+GGG | + | chr4.2:3977758-3977777 | MS.gene06114:intron | 35.0% | |
| TATGCTAGTTGGCACAAAAA+AGG | - | chr4.2:3977802-3977821 | None:intergenic | 35.0% | |
| TGACCCACATTCAATTATAG+AGG | + | chr4.2:3977138-3977157 | MS.gene06114:intron | 35.0% | |
| TGATGATATTCCAAGTTCCA+AGG | - | chr4.2:3977864-3977883 | None:intergenic | 35.0% | |
| TGTAGCTAATCCCATTTAGT+GGG | + | chr4.2:3976274-3976293 | MS.gene06114:intron | 35.0% | |
| TTATAGTGTGGAGAGTTAGT+GGG | - | chr4.2:3976021-3976040 | None:intergenic | 35.0% | |
| TTTATAGTGTGGAGAGTTAG+TGG | - | chr4.2:3976022-3976041 | None:intergenic | 35.0% | |
| ! | CAAGTCTTATCCCACTAAAT+GGG | - | chr4.2:3976287-3976306 | None:intergenic | 35.0% |
| ! | CTGACAAACCTTTTGTATCT+GGG | - | chr4.2:3977759-3977778 | None:intergenic | 35.0% |
| ! | GTTGCTTTGCATATTTAGTC+CGG | + | chr4.2:3975764-3975783 | MS.gene06114:intron | 35.0% |
| ! | TGACAAACCTTTTGTATCTG+GGG | - | chr4.2:3977758-3977777 | None:intergenic | 35.0% |
| ! | TTATCATTTTCTCTTACCGC+CGG | + | chr4.2:3975710-3975729 | MS.gene06114:intron | 35.0% |
| !! | AGAGCTGGTTCCTAATTTTA+TGG | - | chr4.2:3977003-3977022 | None:intergenic | 35.0% |
| !! | ATTATACAAGTGAAGCGTTG+AGG | - | chr4.2:3977112-3977131 | None:intergenic | 35.0% |
| !! | TAGTGGACTGGAGAAATTAT+AGG | + | chr4.2:3975976-3975995 | MS.gene06114:intron | 35.0% |
| !!! | ATTTTCAAGTGTTAGTGGAC+TGG | + | chr4.2:3975964-3975983 | MS.gene06114:intron | 35.0% |
| AAATCGAGCAGCAAGGATAT+AGG | - | chr4.2:3977564-3977583 | None:intergenic | 40.0% | |
| AAGATATCTGCCTTGGAACT+TGG | + | chr4.2:3977851-3977870 | MS.gene06114:CDS | 40.0% | |
| ACAAGAGAATATGTAGGACG+AGG | + | chr4.2:3976090-3976109 | MS.gene06114:intron | 40.0% | |
| ACTTAATTCTCGGTCTGGAT+TGG | - | chr4.2:3975799-3975818 | None:intergenic | 40.0% | |
| ACTTCTTTGGTATGGCACTA+TGG | + | chr4.2:3976636-3976655 | MS.gene06114:intron | 40.0% | |
| AGACACTTGTAACCAAGTCA+CGG | + | chr4.2:3977352-3977371 | MS.gene06114:CDS | 40.0% | |
| AGCTCGTTTACAACTACTCA+GGG | + | chr4.2:3977406-3977425 | MS.gene06114:CDS | 40.0% | |
| ATTTGATGCTACTCCTGATG+AGG | + | chr4.2:3977580-3977599 | MS.gene06114:CDS | 40.0% | |
| CAAGAGAATATGTAGGACGA+GGG | + | chr4.2:3976091-3976110 | MS.gene06114:intron | 40.0% | |
| CCAGATACAAAAGGTTTGTC+AGG | + | chr4.2:3977757-3977776 | MS.gene06114:intron | 40.0% | |
| CCATCTTGATTAGGAGGAAT+CGG | - | chr4.2:3976879-3976898 | None:intergenic | 40.0% | |
| CCATTTAGTGGGATAAGACT+TGG | + | chr4.2:3976285-3976304 | MS.gene06114:intron | 40.0% | |
| GAAACACTTAATTCTCGGTC+TGG | - | chr4.2:3975804-3975823 | None:intergenic | 40.0% | |
| GCATTACAAGATATCTGCCT+TGG | + | chr4.2:3977844-3977863 | MS.gene06114:intron | 40.0% | |
| GCTAGAACAGGGAAAATATC+TGG | - | chr4.2:3977321-3977340 | None:intergenic | 40.0% | |
| TAAACACTTCAGCTAAGAGC+TGG | - | chr4.2:3977018-3977037 | None:intergenic | 40.0% | |
| TAGAATCTTCTCACCTCATC+AGG | - | chr4.2:3977596-3977615 | None:intergenic | 40.0% | |
| TCCAATGACGAGTTTCTCTA+TGG | - | chr4.2:3977693-3977712 | None:intergenic | 40.0% | |
| TCTCTCATTACCGACATAAG+AGG | - | chr4.2:3977203-3977222 | None:intergenic | 40.0% | |
| TGAGTAGTTGTAAACGAGCT+CGG | - | chr4.2:3977406-3977425 | None:intergenic | 40.0% | |
| TGGAAAAGAGATTGACCTAG+AGG | + | chr4.2:3977709-3977728 | MS.gene06114:CDS | 40.0% | |
| TGGTATGGCACTATGGTAAA+TGG | + | chr4.2:3976643-3976662 | MS.gene06114:intron | 40.0% | |
| TGTTTCTTGCAGGGAACTAT+TGG | + | chr4.2:3977046-3977065 | MS.gene06114:intron | 40.0% | |
| TTGCAATCGCCATCTTGATT+AGG | - | chr4.2:3976888-3976907 | None:intergenic | 40.0% | |
| TTTGCATATTTAGTCCGGAC+TGG | + | chr4.2:3975769-3975788 | MS.gene06114:intron | 40.0% | |
| ! | CAGGGAAAATATCTGGAATC+TGG | - | chr4.2:3977314-3977333 | None:intergenic | 40.0% |
| ! | CCAAGTCTTATCCCACTAAA+TGG | - | chr4.2:3976288-3976307 | None:intergenic | 40.0% |
| ! | CCTGACAAACCTTTTGTATC+TGG | - | chr4.2:3977760-3977779 | None:intergenic | 40.0% |
| ! | TATTGGAAAGCATGCAAGCT+GGG | + | chr4.2:3977063-3977082 | MS.gene06114:CDS | 40.0% |
| !! | CTATTCACAACATTTGGTGC+TGG | + | chr4.2:3976807-3976826 | MS.gene06114:intron | 40.0% |
| !!! | ATTTTGATTGTAGCGCGACA+GGG | - | chr4.2:3976121-3976140 | None:intergenic | 40.0% |
| !!! | TATTTTGATTGTAGCGCGAC+AGG | - | chr4.2:3976122-3976141 | None:intergenic | 40.0% |
| AAACCTGCCCCAGATACAAA+AGG | + | chr4.2:3977748-3977767 | MS.gene06114:CDS | 45.0% | |
| AAGCATCACGAGCAGCTATT+CGG | - | chr4.2:3977907-3977926 | None:intergenic | 45.0% | |
| AAGCTCATCGACGACATCAA+TGG | + | chr4.2:3975577-3975596 | MS.gene06114:CDS | 45.0% | |
| ATTGACCTAGAGGAGCTGAA+AGG | + | chr4.2:3977719-3977738 | MS.gene06114:CDS | 45.0% | |
| CAATCGCCATCTTGATTAGG+AGG | - | chr4.2:3976885-3976904 | None:intergenic | 45.0% | |
| CCGATTCCTCCTAATCAAGA+TGG | + | chr4.2:3976876-3976895 | MS.gene06114:intron | 45.0% | |
| CTCTTGTGAATTGGCGATGT+GGG | - | chr4.2:3976077-3976096 | None:intergenic | 45.0% | |
| GAAGCAATAAAGTAAGCCGG+CGG | - | chr4.2:3975729-3975748 | None:intergenic | 45.0% | |
| GACACTTGTAACCAAGTCAC+GGG | + | chr4.2:3977353-3977372 | MS.gene06114:CDS | 45.0% | |
| GAGAGAATCCGAATGATGCT+AGG | + | chr4.2:3977217-3977236 | MS.gene06114:intron | 45.0% | |
| GAGCTCGTTTACAACTACTC+AGG | + | chr4.2:3977405-3977424 | MS.gene06114:CDS | 45.0% | |
| GCCATAGAGAAACTCGTCAT+TGG | + | chr4.2:3977689-3977708 | MS.gene06114:CDS | 45.0% | |
| TAGCATCAAATCGAGCAGCA+AGG | - | chr4.2:3977571-3977590 | None:intergenic | 45.0% | |
| TCTCTTGTGAATTGGCGATG+TGG | - | chr4.2:3976078-3976097 | None:intergenic | 45.0% | |
| TCTTGTGAATTGGCGATGTG+GGG | - | chr4.2:3976076-3976095 | None:intergenic | 45.0% | |
| TTGACCTAGAGGAGCTGAAA+GGG | + | chr4.2:3977720-3977739 | MS.gene06114:CDS | 45.0% | |
| ! | CTATTGGAAAGCATGCAAGC+TGG | + | chr4.2:3977062-3977081 | MS.gene06114:CDS | 45.0% |
| ! | GCTTTGAGCTAAAGGGATCT+TGG | - | chr4.2:3976168-3976187 | None:intergenic | 45.0% |
| !! | AAACCTTTTGTATCTGGGGC+AGG | - | chr4.2:3977754-3977773 | None:intergenic | 45.0% |
| !! | AATTGGTGACGTCTGTGTAG+AGG | - | chr4.2:3975621-3975640 | None:intergenic | 45.0% |
| !! | ATTGGTGACGTCTGTGTAGA+GGG | - | chr4.2:3975620-3975639 | None:intergenic | 45.0% |
| !! | GAGAGGAGCTTTGAGCTAAA+GGG | - | chr4.2:3976175-3976194 | None:intergenic | 45.0% |
| !! | GGGAGTGTGCTTGATTTTAG+TGG | + | chr4.2:3976672-3976691 | MS.gene06114:intron | 45.0% |
| !! | TGAGAGGAGCTTTGAGCTAA+AGG | - | chr4.2:3976176-3976195 | None:intergenic | 45.0% |
| !! | AAGTTTAAAAAATAAAAAAT+TGG | - | chr4.2:3976401-3976420 | None:intergenic | 5.0% |
| !! | AGTTTAAAAAATAAAAAATT+GGG | - | chr4.2:3976400-3976419 | None:intergenic | 5.0% |
| !! | TAATAATAATTAACTTAAAA+CGG | - | chr4.2:3975832-3975851 | None:intergenic | 5.0% |
| AAAGCTCCTCTCACCACCAA+GGG | + | chr4.2:3976183-3976202 | MS.gene06114:intron | 50.0% | |
| AAGCATGCAAGCTGGGACAT+TGG | + | chr4.2:3977070-3977089 | MS.gene06114:CDS | 50.0% | |
| CAGCAGTGAGCAGTAAGGTT+GGG | - | chr4.2:3976145-3976164 | None:intergenic | 50.0% | |
| GCGTTGAGGAATGCAACTTC+TGG | - | chr4.2:3977098-3977117 | None:intergenic | 50.0% | |
| TCTGGTGCAGTTGAGAACAG+TGG | - | chr4.2:3977296-3977315 | None:intergenic | 50.0% | |
| TGTGTGCAGCTGCTAGAACA+GGG | - | chr4.2:3977332-3977351 | None:intergenic | 50.0% | |
| TTGTGTGCAGCTGCTAGAAC+AGG | - | chr4.2:3977333-3977352 | None:intergenic | 50.0% | |
| !! | AATTCTCGGTCTGGATTGGC+CGG | - | chr4.2:3975795-3975814 | None:intergenic | 50.0% |
| !! | CATATTTAGTCCGGACTGGC+CGG | + | chr4.2:3975773-3975792 | MS.gene06114:intron | 50.0% |
| AAGCTCCTCTCACCACCAAG+GGG | + | chr4.2:3976184-3976203 | MS.gene06114:intron | 55.0% | |
| CAAAGCTCCTCTCACCACCA+AGG | + | chr4.2:3976182-3976201 | MS.gene06114:intron | 55.0% | |
| CTCTCCCTTTCAGCTCCTCT+AGG | - | chr4.2:3977727-3977746 | None:intergenic | 55.0% | |
| CTTGGCAGCAGTGAGCAGTA+AGG | - | chr4.2:3976150-3976169 | None:intergenic | 55.0% | |
| GAGAGTTAGTGGGAGTGGTG+AGG | - | chr4.2:3976011-3976030 | None:intergenic | 55.0% | |
| GCAGCAGTGAGCAGTAAGGT+TGG | - | chr4.2:3976146-3976165 | None:intergenic | 55.0% | |
| GGTCAAAGAGTCCCGTGACT+TGG | - | chr4.2:3977367-3977386 | None:intergenic | 55.0% | |
| GTAGAGGGAGAGACAGAGAG+TGG | - | chr4.2:3975605-3975624 | None:intergenic | 55.0% | |
| GTGTGGAGAGTTAGTGGGAG+TGG | - | chr4.2:3976016-3976035 | None:intergenic | 55.0% | |
| TTGATTGTAGCGCGACAGGG+AGG | - | chr4.2:3976118-3976137 | None:intergenic | 55.0% | |
| ! | CTCGGAATGAAGAGTGCGTG+TGG | - | chr4.2:3977388-3977407 | None:intergenic | 55.0% |
| AGCTCCTCTCACCACCAAGG+GGG | + | chr4.2:3976185-3976204 | MS.gene06114:intron | 60.0% | |
| CCTCTCACCACCAAGGGGGA+GGG | + | chr4.2:3976189-3976208 | MS.gene06114:intron | 65.0% | |
| CTCTCACCACCAAGGGGGAG+GGG | + | chr4.2:3976190-3976209 | MS.gene06114:intron | 65.0% | |
| TCCTCTCACCACCAAGGGGG+AGG | + | chr4.2:3976188-3976207 | MS.gene06114:intron | 65.0% | |
| TCTCACCACCAAGGGGGAGG+GGG | + | chr4.2:3976191-3976210 | MS.gene06114:intron | 65.0% | |
| !! | TCTGGATTGGCCGGCCAGTC+CGG | - | chr4.2:3975786-3975805 | None:intergenic | 65.0% |
| ATCGACCCCCTCCCCCTTGG+TGG | - | chr4.2:3976199-3976218 | None:intergenic | 70.0% | |
| !! | CCCTCCCCCTTGGTGGTGAG+AGG | - | chr4.2:3976192-3976211 | None:intergenic | 70.0% |
| !! | GGCATCGACCCCCTCCCCCT+TGG | - | chr4.2:3976202-3976221 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 3975574 | 3977931 | 3975574 | ID=MS.gene06114 |
| chr4.2 | mRNA | 3975574 | 3977931 | 3975574 | ID=MS.gene06114.t1;Parent=MS.gene06114 |
| chr4.2 | exon | 3975574 | 3975644 | 3975574 | ID=MS.gene06114.t1.exon1;Parent=MS.gene06114.t1 |
| chr4.2 | CDS | 3975574 | 3975644 | 3975574 | ID=cds.MS.gene06114.t1;Parent=MS.gene06114.t1 |
| chr4.2 | exon | 3977058 | 3977124 | 3977058 | ID=MS.gene06114.t1.exon2;Parent=MS.gene06114.t1 |
| chr4.2 | CDS | 3977058 | 3977124 | 3977058 | ID=cds.MS.gene06114.t1;Parent=MS.gene06114.t1 |
| chr4.2 | exon | 3977315 | 3977437 | 3977315 | ID=MS.gene06114.t1.exon3;Parent=MS.gene06114.t1 |
| chr4.2 | CDS | 3977315 | 3977437 | 3977315 | ID=cds.MS.gene06114.t1;Parent=MS.gene06114.t1 |
| chr4.2 | exon | 3977518 | 3977601 | 3977518 | ID=MS.gene06114.t1.exon4;Parent=MS.gene06114.t1 |
| chr4.2 | CDS | 3977518 | 3977601 | 3977518 | ID=cds.MS.gene06114.t1;Parent=MS.gene06114.t1 |
| chr4.2 | exon | 3977683 | 3977769 | 3977683 | ID=MS.gene06114.t1.exon5;Parent=MS.gene06114.t1 |
| chr4.2 | CDS | 3977683 | 3977769 | 3977683 | ID=cds.MS.gene06114.t1;Parent=MS.gene06114.t1 |
| chr4.2 | exon | 3977845 | 3977931 | 3977845 | ID=MS.gene06114.t1.exon6;Parent=MS.gene06114.t1 |
| chr4.2 | CDS | 3977845 | 3977931 | 3977845 | ID=cds.MS.gene06114.t1;Parent=MS.gene06114.t1 |
| Gene Sequence |
| Protein sequence |
