AlfalfaGEDB | MS.gene06114

M. sativa cultivar XinJiangDaYe / MS.gene06114

KEGG: K15901
GO: -
PFAM: PF08617.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06114.t1	XP_024628370.1	98.3	172	2	1	1	172	1	171	3.10E-83	317.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06114.t1	Q8QZZ7	32.3	161	105	2	14	172	17	175	2.2e-16	87.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06114.t1	I3S9S0	98.3	172	2	1	1	172	1	171	2.3e-83	317.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050438	MS.gene06114	0.806113	9.63E-50	-1.69E-46
MS.gene06114	MS.gene072671	0.803913	2.78E-49	-1.69E-46
MS.gene06114	MS.gene20205	0.894675	1.97E-75	-1.69E-46
MS.gene06114	MS.gene23173	0.803384	3.58E-49	-1.69E-46
MS.gene06114	MS.gene23642	0.805964	1.03E-49	-1.69E-46
MS.gene06114	MS.gene36143	0.821229	4.51E-53	-1.69E-46
MS.gene06114	MS.gene53200	0.803595	3.23E-49	-1.69E-46
MS.gene06114	MS.gene55833	0.944204	3.00E-103	-1.69E-46
MS.gene06114	MS.gene59769	0.803494	3.39E-49	-1.69E-46
MS.gene06114	MS.gene78659	0.809434	1.90E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06114.t1	MTR_8g099835	100.000	148	0	0	25	172	5	152	1.46e-105	299
MS.gene06114.t1	MTR_2g105210	75.610	123	21	1	47	169	3	116	9.16e-58	178

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06114.t1	AT4G34412	72.674	172	47	0	1	172	1	172	1.70e-86	251

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Find 38 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGCCCCAGATACAAA+AGG	0.559565	4.2:+3977748	MS.gene06114:CDS
AAATCGAGCAGCAAGGATAT+AGG	0.479316	4.2:-3977561	None:intergenic
AAGATATCTGCCTTGGAACT+TGG	0.384569	4.2:+3977851	MS.gene06114:CDS
AAGCATCACGAGCAGCTATT+CGG	0.464580	4.2:-3977904	None:intergenic
AAGCATGCAAGCTGGGACAT+TGG	0.416752	4.2:+3977070	MS.gene06114:CDS
AAGCTCATCGACGACATCAA+TGG	0.499776	4.2:+3975577	MS.gene06114:CDS
AATTGGTGACGTCTGTGTAG+AGG	0.624172	4.2:-3975618	None:intergenic
AGACACTTGTAACCAAGTCA+CGG	0.624915	4.2:+3977352	MS.gene06114:CDS
AGCTCGTTTACAACTACTCA+GGG	0.627963	4.2:+3977406	MS.gene06114:CDS
ATTATACAAGTGAAGCGTTG+AGG	0.626795	4.2:-3977109	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACACTATAAATAAGAGCTCA+TGG	+	chr4.2:3976032-3976051	MS.gene06114:intron	30.0%
ACTATGGTAAATGGTTATCA+GGG	+	chr4.2:3976652-3976671	MS.gene06114:intron	30.0%
AGATCCTCTATAATTGAATG+TGG	-	chr4.2:3977145-3977164	None:intergenic	30.0%
ATAACATGATCCTCTTATGT+CGG	+	chr4.2:3977190-3977209	MS.gene06114:intron	30.0%
ATGTAACTATGTTTCTTGCA+GGG	+	chr4.2:3977037-3977056	MS.gene06114:intron	30.0%
CAATTCACAAGAGAATATGT+AGG	+	chr4.2:3976084-3976103	MS.gene06114:intron	30.0%
CACTCAATAGCAATATTTGA+TGG	-	chr4.2:3976698-3976717	None:intergenic	30.0%
CCAAATGTTGTGAATAGTTA+TGG	-	chr4.2:3976804-3976823	None:intergenic	30.0%
CCATAACTATTCACAACATT+TGG	+	chr4.2:3976801-3976820	MS.gene06114:intron	30.0%
CTACATATTCTCTTGTGAAT+TGG	-	chr4.2:3976086-3976105	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	3975574	3977931	3975574	ID=MS.gene06114
chr4.2	mRNA	3975574	3977931	3975574	ID=MS.gene06114.t1;Parent=MS.gene06114
chr4.2	exon	3975574	3975644	3975574	ID=MS.gene06114.t1.exon1;Parent=MS.gene06114.t1
chr4.2	CDS	3975574	3975644	3975574	ID=cds.MS.gene06114.t1;Parent=MS.gene06114.t1
chr4.2	exon	3977058	3977124	3977058	ID=MS.gene06114.t1.exon2;Parent=MS.gene06114.t1
chr4.2	CDS	3977058	3977124	3977058	ID=cds.MS.gene06114.t1;Parent=MS.gene06114.t1
chr4.2	exon	3977315	3977437	3977315	ID=MS.gene06114.t1.exon3;Parent=MS.gene06114.t1
chr4.2	CDS	3977315	3977437	3977315	ID=cds.MS.gene06114.t1;Parent=MS.gene06114.t1
chr4.2	exon	3977518	3977601	3977518	ID=MS.gene06114.t1.exon4;Parent=MS.gene06114.t1
chr4.2	CDS	3977518	3977601	3977518	ID=cds.MS.gene06114.t1;Parent=MS.gene06114.t1
chr4.2	exon	3977683	3977769	3977683	ID=MS.gene06114.t1.exon5;Parent=MS.gene06114.t1
chr4.2	CDS	3977683	3977769	3977683	ID=cds.MS.gene06114.t1;Parent=MS.gene06114.t1
chr4.2	exon	3977845	3977931	3977845	ID=MS.gene06114.t1.exon6;Parent=MS.gene06114.t1
chr4.2	CDS	3977845	3977931	3977845	ID=cds.MS.gene06114.t1;Parent=MS.gene06114.t1

Gene Sequence

>MS.gene06114

ATGAAGCTCATCGACGACATCAATGGAACCACTCTCTGTCTCTCCCTCTACACAGACGTCACCAATTCAAAGTTAGTCTTTCTCTTTTTTATGTCATTCTTGTGCTAAGCTCTTAAACATTATGTTCCTATAAAAATTATCATTTTCTCTTACCGCCGGCTTACTTTATTGCTTCAGTCAAATAAAAATTGTTGCTTTGCATATTTAGTCCGGACTGGCCGGCCAATCCAGACCGAGAATTAAGTGTTTCTCATCCCGTTTTAAGTTAATTATTATTATTATTATTATTATTCAAATGTTGTTATTAACAGCATAAGAGCAATATATGAATTTGGAGTATAAGCAATATTTCTTCTATCCAAATTTAAAGAACTTACTTGACATCGTAATATTTTCAAGTGTTAGTGGACTGGAGAAATTATAGGAACATTTGGCCTCACCACTCCCACTAACTCTCCACACTATAAATAAGAGCTCATGGATGGACTCACTTCTTCTTCCCCACATCGCCAATTCACAAGAGAATATGTAGGACGAGGGTCCTCCCTGTCGCGCTACAATCAAAATACCCAACCTTACTGCTCACTGCTGCCAAGATCCCTTTAGCTCAAAGCTCCTCTCACCACCAAGGGGGAGGGGGTCGATGCCCTTGTACTTACCACAAGTATAACAATAGAACATTATTGTGCAATTTCGTCTATGTAGCTAATCCCATTTAGTGGGATAAGACTTGGTTGTTGTTGTATTTTGTTGCAAGTAAAATATGTGTCTTTCTTATGTATTAATATTATTTGTGTATGAGTTTCTTTGATGTAGAACCAAACCCAATTTTTTATTTTTTAAACTTTTATTGTGTTGTTTTTGTTGTGAATTGAAGAATTTAACTCTTTTATTTTATATTATATAACTAAACTCATGCATTTTATCGTCGTACTCATACCTTAATATTTTTCAAACTGTCAGCAATATTCTCGTATATGTAACTATGCAACATAGGATAACTATCAACGAGGTCTTGTTCAGTACATAGTTATGTTTAGATTTAAGTTTCAACACTTTTTCACTTCTTTGGTATGGCACTATGGTAAATGGTTATCAGGGAGTGTGCTTGATTTTAGTGGCCATCAAATATTGCTATTGAGTGTTACAAGTGACCACTTAATCTCAAAAGTCAGTTTAAGTGTAGTTACTAGTTAGAGTTTCATTTGCTTCTTTTTATTAGTGTCGCCATAACTATTCACAACATTTGGTGCTGGTTGTGCTGTTGCAACAATTCATTTGCGATCAATTGTACTTCGTATGCCGATTCCTCCTAATCAAGATGGCGATTGCAAATAAAATTCTATTTTTAATCACATACACCAATCTATAAAAGTAGATATACAGAATACATTATGAAAATACTATCTATTTATCTGTAATTGATCCATAAAATTAGGAACCAGCTCTTAGCTGAAGTGTTTATGTAACTATGTTTCTTGCAGGGAACTATTGGAAAGCATGCAAGCTGGGACATTGGAGCCAGAAGTTGCATTCCTCAACGCTTCACTTGTATAATTTCTTATGACCCACATTCAATTATAGAGGATCTACTAATTTTTGCTTCTTTTTCTCTCATAACATGATCCTCTTATGTCGGTAATGAGAGAATCCGAATGATGCTAGGACTTGTATTTTTAACAATGACTGTATCAACACGTTTGCTTCTTTCTAATGTTACCACTGTTCTCAACTGCACCAGATTCCAGATATTTTCCCTGTTCTAGCAGCTGCACACAAGACACTTGTAACCAAGTCACGGGACTCTTTGACCACACGCACTCTTCATTCCGAGCTCGTTTACAACTACTCAGGGTCCAAACATGTAATTATGTATTTATATTTAACTTGTTATGGTTCGTATTTCCAGTTAAAGTTTCTAATTTCAGCATGTCTTGCAATTAGATTACTGAATCTTTAAAAAGATGTGGCATCTCTGAAAGCACAACCTATATCCTTGCTGCTCGATTTGATGCTACTCCTGATGAGGTGAGAAGATTCTACAGTAAAATATGGCACTTATTTTTTGTCACTTACATAACTAAAATGATATATGTCTCTCTTTACTAGATAAAAGCCATAGAGAAACTCGTCATTGGAAAAGAGATTGACCTAGAGGAGCTGAAAGGGAGAGCAAACCTGCCCCAGATACAAAAGGTTTGTCAGGGCTTTCATATTACTTTGCACCTTTTTTGTGCCAACTAGCATATTCAATAATTTGTTATGTTTCAGCATTACAAGATATCTGCCTTGGAACTTGGAATATCATCACTTGAAGATGCAATAACTTGCCGAATAGCTGCTCGTGATGCTTTGTAG

Protein sequence

>MS.gene06114.t1

MKLIDDINGTTLCLSLYTDVTNSKELLESMQAGTLEPEVAFLNASLIPDIFPVLAAAHKTLVTKSRDSLTTRTLHSELVYNYSGSKHITESLKRCGISESTTYILAARFDATPDEIKAIEKLVIGKEIDLEELKGRANLPQIQKHYKISALELGISSLEDAITCRIAARDAL