Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20345.t1 | XP_003611217.1 | 95.7 | 233 | 10 | 0 | 1 | 233 | 1 | 233 | 1.10E-118 | 436 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20345.t1 | Q8GW78 | 54.5 | 209 | 85 | 3 | 28 | 233 | 40 | 241 | 1.1e-50 | 201.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20345.t1 | G7KG47 | 95.7 | 233 | 10 | 0 | 1 | 233 | 1 | 233 | 7.7e-119 | 436.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049615 | MS.gene20345 | 0.80779 | 4.25E-50 | -1.69E-46 |
| MS.gene058019 | MS.gene20345 | 0.813362 | 2.66E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20345.t1 | MTR_5g011550 | 95.708 | 233 | 10 | 0 | 1 | 233 | 1 | 233 | 1.10e-157 | 436 |
| MS.gene20345.t1 | MTR_5g011550 | 95.055 | 182 | 9 | 0 | 1 | 182 | 1 | 182 | 1.18e-118 | 337 |
| MS.gene20345.t1 | MTR_6g461650 | 47.475 | 99 | 51 | 1 | 123 | 221 | 12 | 109 | 7.23e-24 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20345.t1 | AT4G12060 | 55.238 | 210 | 82 | 4 | 28 | 233 | 40 | 241 | 1.03e-68 | 211 |
| MS.gene20345.t1 | AT4G25370 | 52.976 | 168 | 78 | 1 | 62 | 229 | 63 | 229 | 1.75e-59 | 187 |
Find 63 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCTAGGAACCAAAATT+AGG | 0.149394 | 5.1:-5010240 | MS.gene20345:CDS |
| TGGCACTGAAGCTCTTATTT+TGG | 0.197598 | 5.1:-5009574 | MS.gene20345:CDS |
| GCAATGTTGAACCCTAATTT+TGG | 0.225097 | 5.1:+5010228 | None:intergenic |
| TAACAAACCCTAACAATTCT+TGG | 0.295248 | 5.1:-5010258 | MS.gene20345:CDS |
| GTTCCTAGCCAAGAATTGTT+AGG | 0.304035 | 5.1:+5010250 | None:intergenic |
| CACACATAATTCTTGGCATT+TGG | 0.321562 | 5.1:-5007329 | MS.gene20345:CDS |
| TTGGCTAGGAACCAAAATTA+GGG | 0.344080 | 5.1:-5010239 | MS.gene20345:CDS |
| GTTGATCGAAAATTAAAATC+TGG | 0.351809 | 5.1:-5008680 | MS.gene20345:intron |
| ACCACAGCACACATAATTCT+TGG | 0.387411 | 5.1:-5007336 | MS.gene20345:CDS |
| TGGGGTTCTAGGTACTAATC+TGG | 0.388828 | 5.1:-5008849 | MS.gene20345:intron |
| TCAGTCACTGGTGGACGCTC+GGG | 0.391183 | 5.1:+5008731 | None:intergenic |
| ATACTCACTTGGGAATTTCC+TGG | 0.395007 | 5.1:+5009742 | None:intergenic |
| AATTTCTAAACATGTTGTTA+AGG | 0.398372 | 5.1:-5007226 | MS.gene20345:CDS |
| AACAACATGTTTAGAAATTG+AGG | 0.411712 | 5.1:+5007230 | None:intergenic |
| ATCAGTCACTGGTGGACGCT+CGG | 0.418240 | 5.1:+5008730 | None:intergenic |
| TGCTCAGAAGGCCCTTGATT+GGG | 0.418536 | 5.1:-5008705 | MS.gene20345:CDS |
| CACTTGGGAATTTCCTGGCC+TGG | 0.426904 | 5.1:+5009747 | None:intergenic |
| ATGCTCAGAAGGCCCTTGAT+TGG | 0.427901 | 5.1:-5008706 | MS.gene20345:CDS |
| AAACTCAAGTTTACTACTAC+TGG | 0.429106 | 5.1:-5009594 | MS.gene20345:CDS |
| TTCGATCAACAGCCCAATCA+AGG | 0.438437 | 5.1:+5008693 | None:intergenic |
| GTGACAAGGTTGAAGGGAAA+TGG | 0.440416 | 5.1:+5010323 | None:intergenic |
| CAAAGGACGGCGGTGGAAAA+CGG | 0.443160 | 5.1:+5010180 | None:intergenic |
| TTCCTAGCCAAGAATTGTTA+GGG | 0.461149 | 5.1:+5010251 | None:intergenic |
| CAGTCACTGGTGGACGCTCG+GGG | 0.465363 | 5.1:+5008732 | None:intergenic |
| TTCGTCATTAATGCCAAGGT+TGG | 0.479778 | 5.1:+5007272 | None:intergenic |
| GATGAAATTGTGAAAGTACT+TGG | 0.480263 | 5.1:-5008779 | MS.gene20345:CDS |
| TGGTCTGATGTGGATTCCCC+AGG | 0.492555 | 5.1:-5007309 | MS.gene20345:CDS |
| TTCTGAGCATCATCAGTCAC+TGG | 0.493425 | 5.1:+5008719 | None:intergenic |
| GAACGCAGTGACAAGGTTGA+AGG | 0.494563 | 5.1:+5010316 | None:intergenic |
| CTTGAAAAGTGTAATTCCAT+TGG | 0.498369 | 5.1:+5008808 | None:intergenic |
| AATCCTGAGCGTGTTTCTCC+AGG | 0.502802 | 5.1:-5009765 | MS.gene20345:CDS |
| TCTTGGCATTTGGTCTGATG+TGG | 0.512741 | 5.1:-5007319 | MS.gene20345:CDS |
| TTCTGAATCAAACGAAGAGA+AGG | 0.513016 | 5.1:+5010289 | None:intergenic |
| TAGCAGCCAAAGGACGGCGG+TGG | 0.529392 | 5.1:+5010173 | None:intergenic |
| GTTTGCAATGTCTGCAATCG+AGG | 0.538586 | 5.1:-5009622 | MS.gene20345:CDS |
| ACGGAAGAAGCTTACGAGGT+GGG | 0.538870 | 5.1:+5010133 | None:intergenic |
| TGGATAGTATCTTGTGACCT+GGG | 0.541017 | 5.1:+5007292 | None:intergenic |
| TGAGCGTGTTTCTCCAGGCC+AGG | 0.541328 | 5.1:-5009760 | MS.gene20345:CDS |
| AACCCTAACAATTCTTGGCT+AGG | 0.555839 | 5.1:-5010253 | MS.gene20345:CDS |
| AAACGGTAGCAGCCAAAGGA+CGG | 0.558088 | 5.1:+5010167 | None:intergenic |
| ACGGCGGTGGAAAACGGAGA+CGG | 0.563060 | 5.1:+5010186 | None:intergenic |
| TTGGATAGTATCTTGTGACC+TGG | 0.565691 | 5.1:+5007291 | None:intergenic |
| TGGCCTGGAGAAACACGCTC+AGG | 0.569149 | 5.1:+5009762 | None:intergenic |
| AGTGACTGATGATGCTCAGA+AGG | 0.578354 | 5.1:-5008717 | MS.gene20345:CDS |
| AACGCAGTGACAAGGTTGAA+GGG | 0.579483 | 5.1:+5010317 | None:intergenic |
| TGTGAATTGCAGTTGATGGT+GGG | 0.597530 | 5.1:-5007365 | MS.gene20345:intron |
| TCGATCAACAGCCCAATCAA+GGG | 0.597652 | 5.1:+5008694 | None:intergenic |
| CGGAAGAAGCTTACGAGGTG+GGG | 0.599247 | 5.1:+5010134 | None:intergenic |
| ATGTGAATTGCAGTTGATGG+TGG | 0.600685 | 5.1:-5007366 | MS.gene20345:intron |
| ATGTTGTTAAGGATGAATGA+TGG | 0.608307 | 5.1:-5007215 | None:intergenic |
| CACAAGATACTATCCAACCT+TGG | 0.608702 | 5.1:-5007285 | MS.gene20345:CDS |
| TCTGAATCAAACGAAGAGAA+GGG | 0.609767 | 5.1:+5010290 | None:intergenic |
| TGAGCATCATCAGTCACTGG+TGG | 0.611178 | 5.1:+5008722 | None:intergenic |
| GGTGGGGAGACTGAAGGAAA+CGG | 0.627016 | 5.1:+5010150 | None:intergenic |
| AAGGAAACGGTAGCAGCCAA+AGG | 0.627517 | 5.1:+5010163 | None:intergenic |
| TTACGAGGTGGGGAGACTGA+AGG | 0.627947 | 5.1:+5010144 | None:intergenic |
| AGGGTTCGAACGCAGTGACA+AGG | 0.640507 | 5.1:+5010309 | None:intergenic |
| GGATAGTATCTTGTGACCTG+GGG | 0.658006 | 5.1:+5007293 | None:intergenic |
| GCCAAGAATTATGTGTGCTG+TGG | 0.675655 | 5.1:+5007335 | None:intergenic |
| GCGGTGGAAAACGGAGACGG+AGG | 0.678617 | 5.1:+5010189 | None:intergenic |
| CGGTAGCAGCCAAAGGACGG+CGG | 0.692355 | 5.1:+5010170 | None:intergenic |
| GTGAATTGCAGTTGATGGTG+GGG | 0.701928 | 5.1:-5007364 | MS.gene20345:intron |
| AGTCACTGGTGGACGCTCGG+GGG | 0.720705 | 5.1:+5008733 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCACATGAATTTATAAAA+AGG | + | chr5.1:5010180-5010199 | None:intergenic | 15.0% |
| !! | CAGTAAAAAAAATAAAATAG+TGG | + | chr5.1:5007740-5007759 | None:intergenic | 15.0% |
| !!! | AAACTTTTATTGTAAAGAAA+TGG | + | chr5.1:5008651-5008670 | None:intergenic | 15.0% |
| !!! | AACTTTTATTGTAAAGAAAT+GGG | + | chr5.1:5008650-5008669 | None:intergenic | 15.0% |
| !!! | AATTTTGCCATTATTATATT+TGG | - | chr5.1:5008582-5008601 | MS.gene20345:intron | 15.0% |
| !!! | ATTTTGCCATTATTATATTT+GGG | - | chr5.1:5008583-5008602 | MS.gene20345:intron | 15.0% |
| !!! | TGTTTTTAATTGCATTTTAA+CGG | - | chr5.1:5009054-5009073 | MS.gene20345:intron | 15.0% |
| !!! | TTTCTTTACAATAAAAGTTT+TGG | - | chr5.1:5008651-5008670 | MS.gene20345:intron | 15.0% |
| !! | AAAATGCAATTAAAAACATC+TGG | + | chr5.1:5009052-5009071 | None:intergenic | 20.0% |
| !! | AACAAAAATCATCTAAACAA+TGG | + | chr5.1:5009898-5009917 | None:intergenic | 20.0% |
| !! | AAGTGACAGAAAAAATAATA+TGG | + | chr5.1:5010060-5010079 | None:intergenic | 20.0% |
| !! | AATTTCTAAACATGTTGTTA+AGG | - | chr5.1:5010332-5010351 | MS.gene20345:CDS | 20.0% |
| !! | ACATCAAAACAATATTAACA+AGG | + | chr5.1:5008106-5008125 | None:intergenic | 20.0% |
| !! | AGTAAAGTAAATGAGAAAAA+TGG | + | chr5.1:5008914-5008933 | None:intergenic | 20.0% |
| !! | AGTGACAGAAAAAATAATAT+GGG | + | chr5.1:5010059-5010078 | None:intergenic | 20.0% |
| !! | ATCAAAAGTTTCATAAGAAA+AGG | + | chr5.1:5010116-5010135 | None:intergenic | 20.0% |
| !! | GAAAATATATAAATTAGCAG+TGG | + | chr5.1:5010037-5010056 | None:intergenic | 20.0% |
| !! | GATTCTTATCAAATATTCTA+TGG | - | chr5.1:5010133-5010152 | MS.gene20345:intron | 20.0% |
| !! | GTTACAAAATATTGTCTAAT+TGG | + | chr5.1:5009196-5009215 | None:intergenic | 20.0% |
| !! | GTTTGTCTTTACAATATAAA+TGG | - | chr5.1:5008076-5008095 | MS.gene20345:intron | 20.0% |
| !! | TATCTTTAATCTTAAGTCAA+GGG | + | chr5.1:5009500-5009519 | None:intergenic | 20.0% |
| !! | TTGACTTAAGATTAAAGATA+GGG | - | chr5.1:5009500-5009519 | MS.gene20345:intron | 20.0% |
| !!! | AATATTTTCGATATTATTCC+CGG | + | chr5.1:5008509-5008528 | None:intergenic | 20.0% |
| !!! | ACTATTTTATTTAAATCCCT+AGG | - | chr5.1:5009326-5009345 | MS.gene20345:intron | 20.0% |
| !!! | ACTTTTATTGTAAAGAAATG+GGG | + | chr5.1:5008649-5008668 | None:intergenic | 20.0% |
| !!! | AGTTCTTGATGAAATTTTAT+AGG | - | chr5.1:5009217-5009236 | MS.gene20345:intron | 20.0% |
| !!! | ATGACTTTTAGAATAATACT+TGG | - | chr5.1:5008410-5008429 | MS.gene20345:intron | 20.0% |
| !!! | TATTTTTTCTGTCACTTATT+TGG | - | chr5.1:5010063-5010082 | MS.gene20345:intron | 20.0% |
| ! | AACAACATGTTTAGAAATTG+AGG | + | chr5.1:5010331-5010350 | None:intergenic | 25.0% |
| ! | AAGTCGTAACAACTAATTAA+AGG | - | chr5.1:5008461-5008480 | MS.gene20345:intron | 25.0% |
| ! | ACAAAAACTATATGACTGTA+TGG | - | chr5.1:5008972-5008991 | MS.gene20345:intron | 25.0% |
| ! | ACAAAATAAAACTCAAACAC+CGG | + | chr5.1:5009967-5009986 | None:intergenic | 25.0% |
| ! | AGACAAAACAACATTGAATA+TGG | + | chr5.1:5007453-5007472 | None:intergenic | 25.0% |
| ! | ATCCTGTACATAATCAAAAT+AGG | + | chr5.1:5009392-5009411 | None:intergenic | 25.0% |
| ! | CTATCTTTAATCTTAAGTCA+AGG | + | chr5.1:5009501-5009520 | None:intergenic | 25.0% |
| ! | CTTCAAGCACATATATTATT+TGG | + | chr5.1:5009291-5009310 | None:intergenic | 25.0% |
| ! | CTTGACTTAAGATTAAAGAT+AGG | - | chr5.1:5009499-5009518 | MS.gene20345:intron | 25.0% |
| ! | GACAAAACAACATTGAATAT+GGG | + | chr5.1:5007452-5007471 | None:intergenic | 25.0% |
| ! | GTTGATCGAAAATTAAAATC+TGG | - | chr5.1:5008878-5008897 | MS.gene20345:intron | 25.0% |
| ! | TGACTTAAGATTAAAGATAG+GGG | - | chr5.1:5009501-5009520 | MS.gene20345:intron | 25.0% |
| ! | TTAATTAGTTGTTACGACTT+GGG | + | chr5.1:5008461-5008480 | None:intergenic | 25.0% |
| ! | TTTAATTAGTTGTTACGACT+TGG | + | chr5.1:5008462-5008481 | None:intergenic | 25.0% |
| !! | GTGACTAACATAATTTGTAT+TGG | - | chr5.1:5009239-5009258 | MS.gene20345:intron | 25.0% |
| !! | TTTTTGTCTCCTTTCTTTTA+TGG | - | chr5.1:5009092-5009111 | MS.gene20345:intron | 25.0% |
| !!! | AACTGTCTTTTTCACATTTT+TGG | - | chr5.1:5009858-5009877 | MS.gene20345:intron | 25.0% |
| !!! | AATGTTGTTTTGTCTCATTT+TGG | - | chr5.1:5007458-5007477 | MS.gene20345:intron | 25.0% |
| !!! | ATTAAGCCTACTCTATTTTT+GGG | - | chr5.1:5008690-5008709 | MS.gene20345:CDS | 25.0% |
| !!! | GTGTTTGAGTTTTATTTTGT+CGG | - | chr5.1:5009967-5009986 | MS.gene20345:intron | 25.0% |
| !!! | TACCTATTTTGATTATGTAC+AGG | - | chr5.1:5009387-5009406 | MS.gene20345:intron | 25.0% |
| !!! | TGTTGATTGTTGATTTTGTT+TGG | - | chr5.1:5007879-5007898 | MS.gene20345:intron | 25.0% |
| !!! | TTTTTTCTGAAGTTCTTTTG+AGG | - | chr5.1:5008554-5008573 | MS.gene20345:intron | 25.0% |
| AAAATCATCTAAACAATGGC+AGG | + | chr5.1:5009894-5009913 | None:intergenic | 30.0% | |
| AAACTCAAGTTTACTACTAC+TGG | - | chr5.1:5007964-5007983 | MS.gene20345:intron | 30.0% | |
| AAATCATCTAAACAATGGCA+GGG | + | chr5.1:5009893-5009912 | None:intergenic | 30.0% | |
| AACAAACACAGATTACACTT+TGG | + | chr5.1:5008059-5008078 | None:intergenic | 30.0% | |
| AACAACATTGAATATGGGAA+CGG | + | chr5.1:5007447-5007466 | None:intergenic | 30.0% | |
| AAGCCTCCCAAATATAATAA+TGG | + | chr5.1:5008592-5008611 | None:intergenic | 30.0% | |
| ACAAACACAGATTACACTTT+GGG | + | chr5.1:5008058-5008077 | None:intergenic | 30.0% | |
| AGCATCAATCCATAAAAGAA+AGG | + | chr5.1:5009104-5009123 | None:intergenic | 30.0% | |
| ATATGTGCTTGAAGTTGAAA+AGG | - | chr5.1:5009297-5009316 | MS.gene20345:intron | 30.0% | |
| ATTGTAAAGAAATGGGGTAA+GGG | + | chr5.1:5008643-5008662 | None:intergenic | 30.0% | |
| CGGACAACTAATAAGAATAA+CGG | + | chr5.1:5009947-5009966 | None:intergenic | 30.0% | |
| CGTTATTCTTATTAGTTGTC+CGG | - | chr5.1:5009945-5009964 | MS.gene20345:intron | 30.0% | |
| GAACTTAACTCACTGTAATT+GGG | - | chr5.1:5008126-5008145 | MS.gene20345:intron | 30.0% | |
| GGACAACTAATAAGAATAAC+GGG | + | chr5.1:5009946-5009965 | None:intergenic | 30.0% | |
| TAACAAACCCTAACAATTCT+TGG | - | chr5.1:5007300-5007319 | MS.gene20345:CDS | 30.0% | |
| TATTGTAAAGAAATGGGGTA+AGG | + | chr5.1:5008644-5008663 | None:intergenic | 30.0% | |
| TGAACTTAACTCACTGTAAT+TGG | - | chr5.1:5008125-5008144 | MS.gene20345:intron | 30.0% | |
| TTGCCATTATTATATTTGGG+AGG | - | chr5.1:5008586-5008605 | MS.gene20345:intron | 30.0% | |
| ! | CAATGGAATTACACTTTTCA+AGG | - | chr5.1:5008751-5008770 | MS.gene20345:CDS | 30.0% |
| ! | CATTAAGCCTACTCTATTTT+TGG | - | chr5.1:5008689-5008708 | MS.gene20345:CDS | 30.0% |
| ! | CTTGAAAAGTGTAATTCCAT+TGG | + | chr5.1:5008753-5008772 | None:intergenic | 30.0% |
| ! | GATGCTATGGTTTGTATAAA+TGG | - | chr5.1:5009118-5009137 | MS.gene20345:intron | 30.0% |
| ! | TAACTAGAAATCTAGAGTCA+TGG | + | chr5.1:5009369-5009388 | None:intergenic | 30.0% |
| ! | TATAAATACGAATGCCACTT+TGG | - | chr5.1:5010006-5010025 | MS.gene20345:intron | 30.0% |
| !! | AATAATACTTGGCTTGTGTA+AGG | - | chr5.1:5008421-5008440 | MS.gene20345:intron | 30.0% |
| !! | ATAAATACGAATGCCACTTT+GGG | - | chr5.1:5010007-5010026 | MS.gene20345:intron | 30.0% |
| !! | GATGAAATTGTGAAAGTACT+TGG | - | chr5.1:5008779-5008798 | MS.gene20345:CDS | 30.0% |
| !! | TCTTTTATGGATTGATGCTA+TGG | - | chr5.1:5009105-5009124 | MS.gene20345:intron | 30.0% |
| !! | TTAGCTTTTGCAAAGTCATT+TGG | - | chr5.1:5009756-5009775 | MS.gene20345:CDS | 30.0% |
| !!! | AGACTAATTTTGTTGTTACC+TGG | - | chr5.1:5008210-5008229 | MS.gene20345:intron | 30.0% |
| !!! | TTAAGCCTACTCTATTTTTG+GGG | - | chr5.1:5008691-5008710 | MS.gene20345:CDS | 30.0% |
| AAAGCTTCAAACAAAGAGGT+TGG | - | chr5.1:5009449-5009468 | MS.gene20345:intron | 35.0% | |
| AAATGACAGAAACTCGTCTA+TGG | + | chr5.1:5008243-5008262 | None:intergenic | 35.0% | |
| AAATGGAACCGAAAAATCGT+AGG | - | chr5.1:5009135-5009154 | MS.gene20345:intron | 35.0% | |
| AAGCTTCAAACAAAGAGGTT+GGG | - | chr5.1:5009450-5009469 | MS.gene20345:intron | 35.0% | |
| AATTCCAAGATAAAGCCCTT+GGG | - | chr5.1:5009693-5009712 | MS.gene20345:intron | 35.0% | |
| ATCATCATAAACCTGAATGC+AGG | + | chr5.1:5009589-5009608 | None:intergenic | 35.0% | |
| CACACATAATTCTTGGCATT+TGG | - | chr5.1:5010229-5010248 | MS.gene20345:CDS | 35.0% | |
| CTAGAATGATCTTGTGACAA+AGG | - | chr5.1:5009920-5009939 | MS.gene20345:intron | 35.0% | |
| TAATAAAAGCCTCTGACCTA+GGG | + | chr5.1:5009345-5009364 | None:intergenic | 35.0% | |
| TAATCAACGTTTGAATGCCA+AGG | + | chr5.1:5009162-5009181 | None:intergenic | 35.0% | |
| TAGAACCCCAAAAATAGAGT+AGG | + | chr5.1:5008699-5008718 | None:intergenic | 35.0% | |
| TATCATCAATTGCCAAAGAG+TGG | - | chr5.1:5008939-5008958 | MS.gene20345:intron | 35.0% | |
| TATTTAAATCCCTAGGTCAG+AGG | - | chr5.1:5009333-5009352 | MS.gene20345:intron | 35.0% | |
| TCTGAATCAAACGAAGAGAA+GGG | + | chr5.1:5007271-5007290 | None:intergenic | 35.0% | |
| TGTCAAATATTCCTGCATTC+AGG | - | chr5.1:5009575-5009594 | MS.gene20345:CDS | 35.0% | |
| TTAATAAAAGCCTCTGACCT+AGG | + | chr5.1:5009346-5009365 | None:intergenic | 35.0% | |
| TTCATGTGAATTGCAGTTGA+TGG | - | chr5.1:5010189-5010208 | MS.gene20345:CDS | 35.0% | |
| TTCCTAGCCAAGAATTGTTA+GGG | + | chr5.1:5007310-5007329 | None:intergenic | 35.0% | |
| TTCTGAATCAAACGAAGAGA+AGG | + | chr5.1:5007272-5007291 | None:intergenic | 35.0% | |
| TTGGCTAGGAACCAAAATTA+GGG | - | chr5.1:5007319-5007338 | MS.gene20345:CDS | 35.0% | |
| TTTCACCTGAACTTACTTTC+TGG | - | chr5.1:5008375-5008394 | MS.gene20345:intron | 35.0% | |
| ! | GCAATGTTGAACCCTAATTT+TGG | + | chr5.1:5007333-5007352 | None:intergenic | 35.0% |
| ! | TCTGTCACTTATTTGGTGAA+TGG | - | chr5.1:5010070-5010089 | MS.gene20345:intron | 35.0% |
| ! | TTTGTTTGGTGAAAGCAAGA+TGG | - | chr5.1:5007893-5007912 | MS.gene20345:intron | 35.0% |
| !! | ATTTTGGGGATTCTTATCGA+GGG | - | chr5.1:5008000-5008019 | MS.gene20345:intron | 35.0% |
| !! | CTTTTTCGTCATTAATGCCA+AGG | + | chr5.1:5010293-5010312 | None:intergenic | 35.0% |
| !! | TAAATACGAATGCCACTTTG+GGG | - | chr5.1:5010008-5010027 | MS.gene20345:intron | 35.0% |
| !! | TATTTTGGGGATTCTTATCG+AGG | - | chr5.1:5007999-5008018 | MS.gene20345:intron | 35.0% |
| !!! | AGAGACTTGATTTTTTCACC+GGG | - | chr5.1:5008488-5008507 | MS.gene20345:intron | 35.0% |
| !!! | CAGAGACTTGATTTTTTCAC+CGG | - | chr5.1:5008487-5008506 | MS.gene20345:intron | 35.0% |
| !!! | TACTCTATTTTTGGGGTTCT+AGG | - | chr5.1:5008698-5008717 | MS.gene20345:CDS | 35.0% |
| AACCCTAACAATTCTTGGCT+AGG | - | chr5.1:5007305-5007324 | MS.gene20345:CDS | 40.0% | |
| ACCACAGCACACATAATTCT+TGG | - | chr5.1:5010222-5010241 | MS.gene20345:CDS | 40.0% | |
| ATACTCACTTGGGAATTTCC+TGG | + | chr5.1:5007819-5007838 | None:intergenic | 40.0% | |
| CACAAGATACTATCCAACCT+TGG | - | chr5.1:5010273-5010292 | MS.gene20345:CDS | 40.0% | |
| CGAAAAAGCTAAAGAGCTAG+AGG | - | chr5.1:5010305-5010324 | MS.gene20345:CDS | 40.0% | |
| CTCTACCAGAAAGTAAGTTC+AGG | + | chr5.1:5008383-5008402 | None:intergenic | 40.0% | |
| CTTGGCTAGGAACCAAAATT+AGG | - | chr5.1:5007318-5007337 | MS.gene20345:CDS | 40.0% | |
| GAAAATTCACAGTGACTCAC+CGG | + | chr5.1:5009722-5009741 | None:intergenic | 40.0% | |
| GAATTCCAAGATAAAGCCCT+TGG | - | chr5.1:5009692-5009711 | MS.gene20345:intron | 40.0% | |
| GACTCACATGATACTCACTT+GGG | + | chr5.1:5007829-5007848 | None:intergenic | 40.0% | |
| GTGCAAAGCTTCAAACAAAG+AGG | - | chr5.1:5009445-5009464 | MS.gene20345:intron | 40.0% | |
| GTTCCTAGCCAAGAATTGTT+AGG | + | chr5.1:5007311-5007330 | None:intergenic | 40.0% | |
| TCATGGCATGTTTGGTATCA+CGG | + | chr5.1:5009806-5009825 | None:intergenic | 40.0% | |
| TGACTCACATGATACTCACT+TGG | + | chr5.1:5007830-5007849 | None:intergenic | 40.0% | |
| TGCTTGAAGTTGAAAAGGAG+AGG | - | chr5.1:5009302-5009321 | MS.gene20345:intron | 40.0% | |
| TGGATAGTATCTTGTGACCT+GGG | + | chr5.1:5010269-5010288 | None:intergenic | 40.0% | |
| TTCGTCATTAATGCCAAGGT+TGG | + | chr5.1:5010289-5010308 | None:intergenic | 40.0% | |
| TTGGATAGTATCTTGTGACC+TGG | + | chr5.1:5010270-5010289 | None:intergenic | 40.0% | |
| ! | CTTATTTGGTGAATGGAGTG+TGG | - | chr5.1:5010077-5010096 | MS.gene20345:intron | 40.0% |
| !! | ATGTGAATTGCAGTTGATGG+TGG | - | chr5.1:5010192-5010211 | MS.gene20345:CDS | 40.0% |
| !! | GTAAGAAGCATTCCACTCTT+TGG | + | chr5.1:5008954-5008973 | None:intergenic | 40.0% |
| !! | TGGCACTGAAGCTCTTATTT+TGG | - | chr5.1:5007984-5008003 | MS.gene20345:intron | 40.0% |
| !! | TGTGAATTGCAGTTGATGGT+GGG | - | chr5.1:5010193-5010212 | MS.gene20345:CDS | 40.0% |
| !!! | CATTTGGCTTGCTGTGATTT+TGG | - | chr5.1:5009772-5009791 | MS.gene20345:intron | 40.0% |
| !!! | GCACTGAAGCTCTTATTTTG+GGG | - | chr5.1:5007986-5008005 | MS.gene20345:intron | 40.0% |
| !!! | GGCACTGAAGCTCTTATTTT+GGG | - | chr5.1:5007985-5008004 | MS.gene20345:intron | 40.0% |
| AACGCAGTGACAAGGTTGAA+GGG | + | chr5.1:5007244-5007263 | None:intergenic | 45.0% | |
| ACCGAAAAATCGTAGGACCT+TGG | - | chr5.1:5009142-5009161 | MS.gene20345:intron | 45.0% | |
| AGATAAAGCCCTTGGGTTTC+CGG | - | chr5.1:5009700-5009719 | MS.gene20345:intron | 45.0% | |
| ATTAAAGATAGGGGCCAGTC+GGG | - | chr5.1:5009510-5009529 | MS.gene20345:intron | 45.0% | |
| CTCTCTTCTCATGGCATGTT+TGG | + | chr5.1:5009814-5009833 | None:intergenic | 45.0% | |
| GATTAAAGATAGGGGCCAGT+CGG | - | chr5.1:5009509-5009528 | MS.gene20345:intron | 45.0% | |
| GCCAAGAATTATGTGTGCTG+TGG | + | chr5.1:5010226-5010245 | None:intergenic | 45.0% | |
| GGATAGTATCTTGTGACCTG+GGG | + | chr5.1:5010268-5010287 | None:intergenic | 45.0% | |
| GTGACAAGGTTGAAGGGAAA+TGG | + | chr5.1:5007238-5007257 | None:intergenic | 45.0% | |
| GTTTGCAATGTCTGCAATCG+AGG | - | chr5.1:5007936-5007955 | MS.gene20345:intron | 45.0% | |
| TCGATCAACAGCCCAATCAA+GGG | + | chr5.1:5008867-5008886 | None:intergenic | 45.0% | |
| TCTTGGCATTTGGTCTGATG+TGG | - | chr5.1:5010239-5010258 | MS.gene20345:CDS | 45.0% | |
| TTCGATCAACAGCCCAATCA+AGG | + | chr5.1:5008868-5008887 | None:intergenic | 45.0% | |
| TTCTGAGCATCATCAGTCAC+TGG | + | chr5.1:5008842-5008861 | None:intergenic | 45.0% | |
| ! | AGCAAGTTTTTGCGAGCCAA+TGG | - | chr5.1:5008734-5008753 | MS.gene20345:CDS | 45.0% |
| ! | AGTGACTGATGATGCTCAGA+AGG | - | chr5.1:5008841-5008860 | MS.gene20345:CDS | 45.0% |
| ! | AGTTGTTACGACTTGGGAGA+GGG | + | chr5.1:5008455-5008474 | None:intergenic | 45.0% |
| ! | GAAACCCAAGGGCTTTATCT+TGG | + | chr5.1:5009700-5009719 | None:intergenic | 45.0% |
| ! | GCCAAGGTCCTACGATTTTT+CGG | + | chr5.1:5009146-5009165 | None:intergenic | 45.0% |
| ! | TAGTTGTTACGACTTGGGAG+AGG | + | chr5.1:5008456-5008475 | None:intergenic | 45.0% |
| !! | GTGAATTGCAGTTGATGGTG+GGG | - | chr5.1:5010194-5010213 | MS.gene20345:CDS | 45.0% |
| !! | TGGGGTTCTAGGTACTAATC+TGG | - | chr5.1:5008709-5008728 | MS.gene20345:CDS | 45.0% |
| AAACGGTAGCAGCCAAAGGA+CGG | + | chr5.1:5007394-5007413 | None:intergenic | 50.0% | |
| AACGGAAGAAGCTTACGAGG+TGG | + | chr5.1:5007429-5007448 | None:intergenic | 50.0% | |
| AAGGAAACGGTAGCAGCCAA+AGG | + | chr5.1:5007398-5007417 | None:intergenic | 50.0% | |
| AATCCTGAGCGTGTTTCTCC+AGG | - | chr5.1:5007793-5007812 | MS.gene20345:intron | 50.0% | |
| ACATGCCATGAGAAGAGAGC+AGG | - | chr5.1:5009815-5009834 | MS.gene20345:intron | 50.0% | |
| ACGGAAGAAGCTTACGAGGT+GGG | + | chr5.1:5007428-5007447 | None:intergenic | 50.0% | |
| ATGCCATGAGAAGAGAGCAG+GGG | - | chr5.1:5009817-5009836 | MS.gene20345:intron | 50.0% | |
| ATGCTCAGAAGGCCCTTGAT+TGG | - | chr5.1:5008852-5008871 | MS.gene20345:intron | 50.0% | |
| CATCTGGATGAGTGAGACAG+AGG | + | chr5.1:5009036-5009055 | None:intergenic | 50.0% | |
| CATGCCATGAGAAGAGAGCA+GGG | - | chr5.1:5009816-5009835 | MS.gene20345:intron | 50.0% | |
| CTCGTCTATGGTTATCAGCC+AGG | + | chr5.1:5008231-5008250 | None:intergenic | 50.0% | |
| GAACGCAGTGACAAGGTTGA+AGG | + | chr5.1:5007245-5007264 | None:intergenic | 50.0% | |
| TGAGCATCATCAGTCACTGG+TGG | + | chr5.1:5008839-5008858 | None:intergenic | 50.0% | |
| TGCTCAGAAGGCCCTTGATT+GGG | - | chr5.1:5008853-5008872 | MS.gene20345:intron | 50.0% | |
| TGGCATGTTTGGTATCACGG+TGG | + | chr5.1:5009803-5009822 | None:intergenic | 50.0% | |
| !! | TGGTGCTGAGGCTTTTCTTC+AGG | - | chr5.1:5009542-5009561 | MS.gene20345:intron | 50.0% |
| AGGGTTCGAACGCAGTGACA+AGG | + | chr5.1:5007252-5007271 | None:intergenic | 55.0% | |
| AGTGACTCACCGGAAACCCA+AGG | + | chr5.1:5009712-5009731 | None:intergenic | 55.0% | |
| CAAAGGACGGCGGTGGAAAA+CGG | + | chr5.1:5007381-5007400 | None:intergenic | 55.0% | |
| CAACCCCTGCTCTCTTCTCA+TGG | + | chr5.1:5009823-5009842 | None:intergenic | 55.0% | |
| CACCAAAACACAAGCCCGAC+TGG | + | chr5.1:5009527-5009546 | None:intergenic | 55.0% | |
| CACTTGGGAATTTCCTGGCC+TGG | + | chr5.1:5007814-5007833 | None:intergenic | 55.0% | |
| CGGAAGAAGCTTACGAGGTG+GGG | + | chr5.1:5007427-5007446 | None:intergenic | 55.0% | |
| GGGAACGGAAGAAGCTTACG+AGG | + | chr5.1:5007432-5007451 | None:intergenic | 55.0% | |
| GGGGTAAGGGTCACAACACA+GGG | + | chr5.1:5008630-5008649 | None:intergenic | 55.0% | |
| GGGTAAGGGTCACAACACAG+GGG | + | chr5.1:5008629-5008648 | None:intergenic | 55.0% | |
| GGTGGGGAGACTGAAGGAAA+CGG | + | chr5.1:5007411-5007430 | None:intergenic | 55.0% | |
| GTGACTCACCGGAAACCCAA+GGG | + | chr5.1:5009711-5009730 | None:intergenic | 55.0% | |
| TAGCAGTGGCTACCCCAAAG+TGG | + | chr5.1:5010023-5010042 | None:intergenic | 55.0% | |
| TGGGGTAAGGGTCACAACAC+AGG | + | chr5.1:5008631-5008650 | None:intergenic | 55.0% | |
| TGGTCTGATGTGGATTCCCC+AGG | - | chr5.1:5010249-5010268 | MS.gene20345:CDS | 55.0% | |
| TTACGAGGTGGGGAGACTGA+AGG | + | chr5.1:5007417-5007436 | None:intergenic | 55.0% | |
| ! | ATCAGTCACTGGTGGACGCT+CGG | + | chr5.1:5008831-5008850 | None:intergenic | 55.0% |
| !!! | GGGCTTGTGTTTTGGTGCTG+AGG | - | chr5.1:5009530-5009549 | MS.gene20345:intron | 55.0% |
| ACGGCGGTGGAAAACGGAGA+CGG | + | chr5.1:5007375-5007394 | None:intergenic | 60.0% | |
| TGAGCGTGTTTCTCCAGGCC+AGG | - | chr5.1:5007798-5007817 | MS.gene20345:intron | 60.0% | |
| TGGCCTGGAGAAACACGCTC+AGG | + | chr5.1:5007799-5007818 | None:intergenic | 60.0% | |
| ! | CGTTTTCCACCGCCGTCCTT+TGG | - | chr5.1:5007379-5007398 | MS.gene20345:intron | 60.0% |
| ! | GGCCAGTCGGGCTTGTGTTT+TGG | - | chr5.1:5009522-5009541 | MS.gene20345:intron | 60.0% |
| ! | TCAGTCACTGGTGGACGCTC+GGG | + | chr5.1:5008830-5008849 | None:intergenic | 60.0% |
| CGGTAGCAGCCAAAGGACGG+CGG | + | chr5.1:5007391-5007410 | None:intergenic | 65.0% | |
| GCGGTGGAAAACGGAGACGG+AGG | + | chr5.1:5007372-5007391 | None:intergenic | 65.0% | |
| TAGCAGCCAAAGGACGGCGG+TGG | + | chr5.1:5007388-5007407 | None:intergenic | 65.0% | |
| ! | AGTCACTGGTGGACGCTCGG+GGG | + | chr5.1:5008828-5008847 | None:intergenic | 65.0% |
| ! | CAGTCACTGGTGGACGCTCG+GGG | + | chr5.1:5008829-5008848 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 5007218 | 5010362 | 5007218 | ID=MS.gene20345 |
| chr5.1 | mRNA | 5007218 | 5010362 | 5007218 | ID=MS.gene20345.t1;Parent=MS.gene20345 |
| chr5.1 | exon | 5010148 | 5010362 | 5010148 | ID=MS.gene20345.t1.exon1;Parent=MS.gene20345.t1 |
| chr5.1 | CDS | 5010148 | 5010362 | 5010148 | ID=cds.MS.gene20345.t1;Parent=MS.gene20345.t1 |
| chr5.1 | exon | 5009750 | 5009788 | 5009750 | ID=MS.gene20345.t1.exon2;Parent=MS.gene20345.t1 |
| chr5.1 | CDS | 5009750 | 5009788 | 5009750 | ID=cds.MS.gene20345.t1;Parent=MS.gene20345.t1 |
| chr5.1 | exon | 5009559 | 5009668 | 5009559 | ID=MS.gene20345.t1.exon3;Parent=MS.gene20345.t1 |
| chr5.1 | CDS | 5009559 | 5009668 | 5009559 | ID=cds.MS.gene20345.t1;Parent=MS.gene20345.t1 |
| chr5.1 | exon | 5008681 | 5008860 | 5008681 | ID=MS.gene20345.t1.exon4;Parent=MS.gene20345.t1 |
| chr5.1 | CDS | 5008681 | 5008860 | 5008681 | ID=cds.MS.gene20345.t1;Parent=MS.gene20345.t1 |
| chr5.1 | exon | 5007218 | 5007375 | 5007218 | ID=MS.gene20345.t1.exon5;Parent=MS.gene20345.t1 |
| chr5.1 | CDS | 5007218 | 5007375 | 5007218 | ID=cds.MS.gene20345.t1;Parent=MS.gene20345.t1 |
| Gene Sequence |
| Protein sequence |
