Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20459.t1 | XP_013450949.1 | 96.3 | 375 | 13 | 1 | 1 | 374 | 1 | 375 | 3.60E-209 | 737.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20459.t1 | Q5EA79 | 42.5 | 334 | 179 | 7 | 32 | 364 | 19 | 340 | 1.7e-69 | 264.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20459.t1 | A0A072U5G0 | 96.3 | 375 | 13 | 1 | 1 | 374 | 1 | 375 | 2.6e-209 | 737.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052560 | MS.gene20459 | 0.808345 | 3.24E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20459.t1 | MTR_6g011560 | 96.267 | 375 | 13 | 1 | 1 | 374 | 1 | 375 | 0.0 | 734 |
| MS.gene20459.t1 | MTR_6g011550 | 94.933 | 375 | 18 | 1 | 1 | 374 | 1 | 375 | 0.0 | 720 |
| MS.gene20459.t1 | MTR_7g009930 | 72.480 | 367 | 93 | 4 | 1 | 366 | 1 | 360 | 0.0 | 541 |
| MS.gene20459.t1 | MTR_4g108260 | 51.320 | 341 | 139 | 4 | 24 | 363 | 23 | 337 | 2.00e-118 | 347 |
| MS.gene20459.t1 | MTR_6g069630 | 49.123 | 342 | 167 | 5 | 27 | 366 | 3 | 339 | 3.57e-110 | 326 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20459.t1 | AT3G47800 | 54.144 | 362 | 144 | 7 | 4 | 364 | 16 | 356 | 1.09e-131 | 381 |
| MS.gene20459.t1 | AT5G15140 | 57.018 | 342 | 137 | 6 | 24 | 364 | 155 | 487 | 3.00e-128 | 377 |
| MS.gene20459.t1 | AT3G17940 | 48.060 | 335 | 169 | 4 | 33 | 365 | 10 | 341 | 9.85e-110 | 325 |
| MS.gene20459.t1 | AT3G01260 | 43.413 | 334 | 159 | 8 | 32 | 364 | 119 | 423 | 8.73e-79 | 248 |
Find 71 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTTCTTAGCAGCTTC+TGG | 0.181201 | 6.3:+6232500 | MS.gene20459:CDS |
| ATTTAGTTAACCATGCTTAT+TGG | 0.207837 | 6.3:+6235867 | MS.gene20459:CDS |
| AGAGAACAAAGAAGGATTAA+AGG | 0.218075 | 6.3:+6236114 | MS.gene20459:CDS |
| AACAACATAACATGCTTATA+AGG | 0.235997 | 6.3:-6236355 | None:intergenic |
| GGAGCTAAGTTTACTCTAAA+TGG | 0.245263 | 6.3:+6233986 | MS.gene20459:CDS |
| ACAATAGTTGAAGGAAAATT+AGG | 0.263993 | 6.3:-6236319 | None:intergenic |
| TTACTGGTGTAGGTTTGTTT+AGG | 0.267070 | 6.3:-6235844 | None:intergenic |
| GAGGATTCAGTGATGTTCTT+TGG | 0.270041 | 6.3:+6234301 | MS.gene20459:CDS |
| TACTGGTGTAGGTTTGTTTA+GGG | 0.287587 | 6.3:-6235843 | None:intergenic |
| TGTGGTAACTGAATTTGATT+AGG | 0.298603 | 6.3:-6234359 | None:intergenic |
| GCATGGTTAACTAAATTTAC+TGG | 0.313208 | 6.3:-6235860 | None:intergenic |
| CTAAAATGTTGCCACTGTTA+TGG | 0.321628 | 6.3:-6235901 | None:intergenic |
| TTGCTTGCATAATTATGGTT+AGG | 0.322053 | 6.3:-6235817 | None:intergenic |
| TAATTTGTTTCAGGAAAGTT+AGG | 0.323657 | 6.3:+6232796 | MS.gene20459:intron |
| ATTAACTATGTGCTTAATAA+AGG | 0.334398 | 6.3:+6236085 | MS.gene20459:CDS |
| GTAACAGTGAGCTACATTCT+AGG | 0.335336 | 6.3:+6235785 | MS.gene20459:CDS |
| TTACTTTGAAGGTCACTAAC+TGG | 0.341785 | 6.3:+6232597 | MS.gene20459:CDS |
| AAGTTAGGTGATATTGTTCT+TGG | 0.341881 | 6.3:+6232811 | MS.gene20459:CDS |
| ACCACGTTCAGCACTTTGTT+TGG | 0.345777 | 6.3:+6236264 | MS.gene20459:CDS |
| GACAATAACCTTATTCCAAC+TGG | 0.357944 | 6.3:+6235965 | MS.gene20459:CDS |
| TTCCTAAAACCACAAATTGT+TGG | 0.359831 | 6.3:+6236022 | MS.gene20459:CDS |
| TTAGGATGATTAACAGAATC+AGG | 0.363742 | 6.3:-6236301 | None:intergenic |
| GAAAGGTGATCTTACTTTGA+AGG | 0.369435 | 6.3:+6232586 | MS.gene20459:CDS |
| GTTTCCATTACAGGATTTCC+TGG | 0.369437 | 6.3:+6235752 | MS.gene20459:intron |
| CATTAGCAATTAATTTGTAA+TGG | 0.396328 | 6.3:-6234012 | None:intergenic |
| CAGAATGATACATCATACTT+TGG | 0.403305 | 6.3:+6233929 | MS.gene20459:intron |
| TGCTTGCATAATTATGGTTA+GGG | 0.408864 | 6.3:-6235816 | None:intergenic |
| GGAATAAGGTTATTGTCAAT+AGG | 0.410891 | 6.3:-6235959 | None:intergenic |
| GGTAGGGTTGCTAATAGAAT+TGG | 0.416927 | 6.3:+6233962 | MS.gene20459:CDS |
| ATTCTTGTACCAACAATTTG+TGG | 0.418307 | 6.3:-6236031 | None:intergenic |
| TACAAATTAATTGCTAATGA+AGG | 0.427010 | 6.3:+6234016 | MS.gene20459:CDS |
| GCACTATAAAATTGCAATCC+AGG | 0.428333 | 6.3:-6236196 | None:intergenic |
| AACCATGCTTATTGGAACTT+AGG | 0.428402 | 6.3:+6235875 | MS.gene20459:CDS |
| GCAGCTTCTGGATTTGTCAA+TGG | 0.432964 | 6.3:+6232512 | MS.gene20459:CDS |
| GTGGTAACTGAATTTGATTA+GGG | 0.433912 | 6.3:-6234358 | None:intergenic |
| TGTAGCTCACTGTTACTTTG+AGG | 0.450175 | 6.3:-6235778 | None:intergenic |
| ATAGTGATGGATAAGAAATC+AGG | 0.452035 | 6.3:+6236145 | MS.gene20459:CDS |
| GTGAAGAATGATAAGGGAAA+AGG | 0.455139 | 6.3:+6236226 | MS.gene20459:CDS |
| CAGTGATGTTCTTTGGAAAG+TGG | 0.458791 | 6.3:+6234308 | MS.gene20459:CDS |
| AAGCTTAGTACTAATGCTCC+TGG | 0.469025 | 6.3:+6236178 | MS.gene20459:CDS |
| CTTTGGAGCAACCGTTGGTA+GGG | 0.471024 | 6.3:+6233946 | MS.gene20459:CDS |
| ACATAGTAGCACAAATATCT+TGG | 0.474127 | 6.3:-6232477 | None:intergenic |
| AAATTGTTTGAGCTTAAGAA+AGG | 0.475537 | 6.3:+6232569 | MS.gene20459:CDS |
| TACTTTGAAGGTCACTAACT+GGG | 0.480765 | 6.3:+6232598 | MS.gene20459:CDS |
| TTGTATTTACCATTCTTGTC+AGG | 0.487865 | 6.3:-6232647 | None:intergenic |
| GGAAAATTAGAGAACAAAGA+AGG | 0.503162 | 6.3:+6236106 | MS.gene20459:CDS |
| TTAACTAAATTTACTGGTGT+AGG | 0.514196 | 6.3:-6235854 | None:intergenic |
| CAATGGCTCAATCAATAAGA+AGG | 0.526350 | 6.3:+6232529 | MS.gene20459:CDS |
| AAGAATGATAAGGGAAAAGG+AGG | 0.537569 | 6.3:+6236229 | MS.gene20459:CDS |
| ACTTTGGAGCAACCGTTGGT+AGG | 0.537610 | 6.3:+6233945 | MS.gene20459:CDS |
| AGACTTACAGTATATGCCTT+GGG | 0.538560 | 6.3:-6232844 | None:intergenic |
| TTCCTAAGTTCCAATAAGCA+TGG | 0.549621 | 6.3:-6235877 | None:intergenic |
| AAGACTTACAGTATATGCCT+TGG | 0.551996 | 6.3:-6232845 | None:intergenic |
| AGGGTTGCTAATAGAATTGG+AGG | 0.552833 | 6.3:+6233965 | MS.gene20459:CDS |
| GAAGGAAACAACACTCTCCA+TGG | 0.553714 | 6.3:+6234034 | MS.gene20459:CDS |
| GTGGAAAAGTATGTAAGAGA+AGG | 0.556236 | 6.3:+6234327 | MS.gene20459:CDS |
| TTAGTCCTACCTGACAAGAA+TGG | 0.570956 | 6.3:+6232638 | MS.gene20459:CDS |
| ACTGTTACTTTGAGGTCACC+AGG | 0.582122 | 6.3:-6235770 | None:intergenic |
| ATTTACCATTCTTGTCAGGT+AGG | 0.582202 | 6.3:-6232643 | None:intergenic |
| TCATACTTTGGAGCAACCGT+TGG | 0.584784 | 6.3:+6233941 | MS.gene20459:CDS |
| AAAGGTTGCAGCTATAGTGA+TGG | 0.595506 | 6.3:+6236132 | MS.gene20459:CDS |
| AAAAGCATGTGGAACTTTGG+TGG | 0.603729 | 6.3:-6236386 | None:intergenic |
| TTATAATTAGGTGGAACTAG+AGG | 0.607356 | 6.3:+6234282 | MS.gene20459:intron |
| TCTTGGATATGATACTCCCA+AGG | 0.640870 | 6.3:+6232828 | MS.gene20459:CDS |
| TCTATTAGCAACCCTACCAA+CGG | 0.645731 | 6.3:-6233957 | None:intergenic |
| ACTTTGAAGGTCACTAACTG+GGG | 0.657814 | 6.3:+6232599 | MS.gene20459:CDS |
| CTTCTTCACCATCAAAACTG+TGG | 0.659531 | 6.3:-6234377 | None:intergenic |
| TCCAAACAAAGTGCTGAACG+TGG | 0.666017 | 6.3:-6236265 | None:intergenic |
| AGAATGATAAGGGAAAAGGA+GGG | 0.703237 | 6.3:+6236230 | MS.gene20459:CDS |
| AACTTAGGAAACCATAACAG+TGG | 0.715250 | 6.3:+6235890 | MS.gene20459:CDS |
| TGGTAACTGAATTTGATTAG+GGG | 0.732880 | 6.3:-6234357 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTATTATAGTTATTGT+GGG | - | chr6.3:6234161-6234180 | None:intergenic | 10.0% |
| !!! | TCTCTTAATTTTTTATAATT+AGG | + | chr6.3:6234270-6234289 | MS.gene20459:intron | 10.0% |
| !!! | TTTGTTTCAAATATATTTTA+TGG | - | chr6.3:6235300-6235319 | None:intergenic | 10.0% |
| !! | AAATTATTTAAGCATATGTT+TGG | - | chr6.3:6233343-6233362 | None:intergenic | 15.0% |
| !! | ATAAGAAATTGCAAAATATT+TGG | - | chr6.3:6234918-6234937 | None:intergenic | 15.0% |
| !! | CTAAATTATTATAGTTATTG+TGG | - | chr6.3:6234162-6234181 | None:intergenic | 15.0% |
| !! | TAAGAAATTGCAAAATATTT+GGG | - | chr6.3:6234917-6234936 | None:intergenic | 15.0% |
| !!! | AATTGATTCATAGATTAATT+TGG | + | chr6.3:6234211-6234230 | MS.gene20459:intron | 15.0% |
| !!! | CAATTTTTAAATTGTTTTTG+TGG | - | chr6.3:6234196-6234215 | None:intergenic | 15.0% |
| !!! | CTTAATTTTTTATAATTAGG+TGG | + | chr6.3:6234273-6234292 | MS.gene20459:intron | 15.0% |
| !!! | GTGTTATTTTTAGAAAATTA+TGG | - | chr6.3:6233255-6233274 | None:intergenic | 15.0% |
| !!! | TATACATCGAATATTTTTTT+GGG | + | chr6.3:6233537-6233556 | MS.gene20459:intron | 15.0% |
| !!! | TATTTTTAGAAAATTATGGT+AGG | - | chr6.3:6233251-6233270 | None:intergenic | 15.0% |
| !!! | TCTAAAATAAAAGACAATTT+TGG | - | chr6.3:6233039-6233058 | None:intergenic | 15.0% |
| !!! | TTATACATCGAATATTTTTT+TGG | + | chr6.3:6233536-6233555 | MS.gene20459:intron | 15.0% |
| !! | AAAGAAATTGTCCAATTTAT+AGG | - | chr6.3:6234971-6234990 | None:intergenic | 20.0% |
| !! | AAGAAATTGTCCAATTTATA+GGG | - | chr6.3:6234970-6234989 | None:intergenic | 20.0% |
| !! | AATATTGCAGTACTATAATT+TGG | + | chr6.3:6234441-6234460 | MS.gene20459:intron | 20.0% |
| !! | ATCAATAAAGCAACAATTAA+TGG | - | chr6.3:6232714-6232733 | None:intergenic | 20.0% |
| !! | ATTAACTATGTGCTTAATAA+AGG | + | chr6.3:6236085-6236104 | MS.gene20459:CDS | 20.0% |
| !! | CAAAATGTAAACATATTCAA+AGG | - | chr6.3:6232885-6232904 | None:intergenic | 20.0% |
| !! | CTTGTACATAGAATTATAAT+TGG | + | chr6.3:6234104-6234123 | MS.gene20459:intron | 20.0% |
| !! | GAAAATACTAATCAAAGAAT+TGG | - | chr6.3:6232964-6232983 | None:intergenic | 20.0% |
| !! | TACAAATTAATTGCTAATGA+AGG | + | chr6.3:6234016-6234035 | MS.gene20459:CDS | 20.0% |
| !! | TCTATATATATGATGAAATG+TGG | - | chr6.3:6234241-6234260 | None:intergenic | 20.0% |
| !! | TTAGTTAAAACAATGTGTAT+TGG | - | chr6.3:6235501-6235520 | None:intergenic | 20.0% |
| !! | TTATATAAACCCCTATAAAT+TGG | + | chr6.3:6234957-6234976 | MS.gene20459:intron | 20.0% |
| !! | TTCTACTTTATCAATATCAA+AGG | - | chr6.3:6235696-6235715 | None:intergenic | 20.0% |
| !! | TTGACATTTAGTTAGATAAA+AGG | + | chr6.3:6232929-6232948 | MS.gene20459:intron | 20.0% |
| !!! | AAATTTTGTGAAGAATGATA+AGG | + | chr6.3:6236219-6236238 | MS.gene20459:CDS | 20.0% |
| !!! | AATTTTGTGAAGAATGATAA+GGG | + | chr6.3:6236220-6236239 | MS.gene20459:CDS | 20.0% |
| !!! | ACTGTATTTTAACAATTGTT+TGG | + | chr6.3:6233796-6233815 | MS.gene20459:intron | 20.0% |
| !!! | ATTAGTATTTTCTTCTTAGA+CGG | + | chr6.3:6232972-6232991 | MS.gene20459:intron | 20.0% |
| !!! | CATTAGCAATTAATTTGTAA+TGG | - | chr6.3:6234015-6234034 | None:intergenic | 20.0% |
| !!! | CTTAATTATTTTTTCCTCAT+TGG | + | chr6.3:6233680-6233699 | MS.gene20459:intron | 20.0% |
| ! | AAATTGTTTGAGCTTAAGAA+AGG | + | chr6.3:6232569-6232588 | MS.gene20459:CDS | 25.0% |
| ! | AACAACATAACATGCTTATA+AGG | - | chr6.3:6236358-6236377 | None:intergenic | 25.0% |
| ! | AACCAATTACCAAAAACAAA+TGG | + | chr6.3:6236055-6236074 | MS.gene20459:CDS | 25.0% |
| ! | ACAATAGTTGAAGGAAAATT+AGG | - | chr6.3:6236322-6236341 | None:intergenic | 25.0% |
| ! | AGAAATTGTCCAATTTATAG+GGG | - | chr6.3:6234969-6234988 | None:intergenic | 25.0% |
| ! | AGGTACCTATTAAAAATTTG+TGG | - | chr6.3:6233732-6233751 | None:intergenic | 25.0% |
| ! | ATAGTATATGTTTCCATTAC+AGG | + | chr6.3:6235743-6235762 | MS.gene20459:intron | 25.0% |
| ! | ATATAGAGAAAAAGAGGTAA+AGG | - | chr6.3:6235668-6235687 | None:intergenic | 25.0% |
| ! | ATTTAGTTAACCATGCTTAT+TGG | + | chr6.3:6235867-6235886 | MS.gene20459:CDS | 25.0% |
| ! | CCAAAATTATTATAAAGCCT+GGG | - | chr6.3:6235058-6235077 | None:intergenic | 25.0% |
| ! | CTTCAAACAAGTAAAACTAA+AGG | - | chr6.3:6233625-6233644 | None:intergenic | 25.0% |
| ! | GAGAAAATATAGAGAAAAAG+AGG | - | chr6.3:6235674-6235693 | None:intergenic | 25.0% |
| ! | GGGTTTATATAAGAAATTCA+GGG | - | chr6.3:6234949-6234968 | None:intergenic | 25.0% |
| ! | GGTTTATATAAGAAATTCAG+GGG | - | chr6.3:6234948-6234967 | None:intergenic | 25.0% |
| ! | TAATTAAAACATGTGTACCA+TGG | - | chr6.3:6234054-6234073 | None:intergenic | 25.0% |
| ! | TATGTATATAGTATGCTTCA+AGG | - | chr6.3:6235337-6235356 | None:intergenic | 25.0% |
| ! | TGAAATACACAGGTAATATT+AGG | - | chr6.3:6234736-6234755 | None:intergenic | 25.0% |
| ! | TTAACTAAATTTACTGGTGT+AGG | - | chr6.3:6235857-6235876 | None:intergenic | 25.0% |
| ! | TTATAGTACTGCAATATTGA+AGG | - | chr6.3:6234439-6234458 | None:intergenic | 25.0% |
| !! | AAAATTTTCCAGTTGGAATA+AGG | - | chr6.3:6235976-6235995 | None:intergenic | 25.0% |
| !! | ATATTTGAAACAAATCTTCC+TGG | + | chr6.3:6235306-6235325 | MS.gene20459:intron | 25.0% |
| !! | ATTGAAGATCAGAGTTTTTA+GGG | - | chr6.3:6235182-6235201 | None:intergenic | 25.0% |
| !! | CGAATATTTTATGTTTGCTT+TGG | + | chr6.3:6233574-6233593 | MS.gene20459:intron | 25.0% |
| !! | GAGTTCCACAAATTTTTAAT+AGG | + | chr6.3:6233724-6233743 | MS.gene20459:intron | 25.0% |
| !! | GATGAAGTTGTTCAAATTTT+TGG | + | chr6.3:6235923-6235942 | MS.gene20459:CDS | 25.0% |
| !! | TATGTTGTTCTTTTGAATGT+TGG | - | chr6.3:6235534-6235553 | None:intergenic | 25.0% |
| !! | TATTGAAGATCAGAGTTTTT+AGG | - | chr6.3:6235183-6235202 | None:intergenic | 25.0% |
| !! | TCTTTTGTAACAATAGTTGA+AGG | - | chr6.3:6236331-6236350 | None:intergenic | 25.0% |
| !!! | AACCATTTGTTTTTGGTAAT+TGG | - | chr6.3:6236060-6236079 | None:intergenic | 25.0% |
| !!! | ATGTCATAACCATTTGTTTT+TGG | - | chr6.3:6236067-6236086 | None:intergenic | 25.0% |
| !!! | TAATTTGTTTCAGGAAAGTT+AGG | + | chr6.3:6232796-6232815 | MS.gene20459:intron | 25.0% |
| !!! | TGCTTCTATTAATTTGTTTC+AGG | + | chr6.3:6232787-6232806 | MS.gene20459:intron | 25.0% |
| AAATCCACTCTCAATAGTAT+TGG | + | chr6.3:6234668-6234687 | MS.gene20459:intron | 30.0% | |
| AAATTGCAAAATATTTGGGC+CGG | - | chr6.3:6234913-6234932 | None:intergenic | 30.0% | |
| AAGCAACAATTAATGGAAGA+TGG | - | chr6.3:6232707-6232726 | None:intergenic | 30.0% | |
| AAGTTAGGTGATATTGTTCT+TGG | + | chr6.3:6232811-6232830 | MS.gene20459:CDS | 30.0% | |
| AATTTGTGATTCCTGCTATT+AGG | + | chr6.3:6233358-6233377 | MS.gene20459:intron | 30.0% | |
| ACAGGTAATATTAGGTGAAA+AGG | - | chr6.3:6234728-6234747 | None:intergenic | 30.0% | |
| ACATAGTAGCACAAATATCT+TGG | - | chr6.3:6232480-6232499 | None:intergenic | 30.0% | |
| ACATCTCTTATTATGTAAGC+TGG | - | chr6.3:6233098-6233117 | None:intergenic | 30.0% | |
| ACTTACTCAGTTTAATTACC+TGG | - | chr6.3:6233649-6233668 | None:intergenic | 30.0% | |
| AGAGAACAAAGAAGGATTAA+AGG | + | chr6.3:6236114-6236133 | MS.gene20459:CDS | 30.0% | |
| ATAAAAGAGAACACAGAGAA+CGG | + | chr6.3:6234590-6234609 | MS.gene20459:intron | 30.0% | |
| ATAAGAATAGCATACACAAG+TGG | - | chr6.3:6233520-6233539 | None:intergenic | 30.0% | |
| ATCAAACTAGAATGTTCAAC+TGG | + | chr6.3:6232754-6232773 | MS.gene20459:intron | 30.0% | |
| ATTCTTGTACCAACAATTTG+TGG | - | chr6.3:6236034-6236053 | None:intergenic | 30.0% | |
| CAGAATGATACATCATACTT+TGG | + | chr6.3:6233929-6233948 | MS.gene20459:intron | 30.0% | |
| GCATGGTTAACTAAATTTAC+TGG | - | chr6.3:6235863-6235882 | None:intergenic | 30.0% | |
| GCCAAAATTATTATAAAGCC+TGG | - | chr6.3:6235059-6235078 | None:intergenic | 30.0% | |
| GGAAAATTAGAGAACAAAGA+AGG | + | chr6.3:6236106-6236125 | MS.gene20459:CDS | 30.0% | |
| GGAATAAGGTTATTGTCAAT+AGG | - | chr6.3:6235962-6235981 | None:intergenic | 30.0% | |
| GGGGTTTATATAAGAAATTC+AGG | - | chr6.3:6234950-6234969 | None:intergenic | 30.0% | |
| GTATTTATGCAAAATCACGA+TGG | + | chr6.3:6233278-6233297 | MS.gene20459:intron | 30.0% | |
| GTGGTAACTGAATTTGATTA+GGG | - | chr6.3:6234361-6234380 | None:intergenic | 30.0% | |
| TCGATAAATAACCTAATAGC+AGG | - | chr6.3:6233372-6233391 | None:intergenic | 30.0% | |
| TGCTTGCATAATTATGGTTA+GGG | - | chr6.3:6235819-6235838 | None:intergenic | 30.0% | |
| TGGTAACTGAATTTGATTAG+GGG | - | chr6.3:6234360-6234379 | None:intergenic | 30.0% | |
| TGTGGTAACTGAATTTGATT+AGG | - | chr6.3:6234362-6234381 | None:intergenic | 30.0% | |
| TTAACAATTGTTTGGCAACT+GGG | + | chr6.3:6233804-6233823 | MS.gene20459:intron | 30.0% | |
| TTACCTGTGTATTTCAATCT+AGG | + | chr6.3:6234740-6234759 | MS.gene20459:intron | 30.0% | |
| TTAGGATGATTAACAGAATC+AGG | - | chr6.3:6236304-6236323 | None:intergenic | 30.0% | |
| TTATAATTAGGTGGAACTAG+AGG | + | chr6.3:6234282-6234301 | MS.gene20459:intron | 30.0% | |
| TTCCTAAAACCACAAATTGT+TGG | + | chr6.3:6236022-6236041 | MS.gene20459:CDS | 30.0% | |
| TTGCTTGCATAATTATGGTT+AGG | - | chr6.3:6235820-6235839 | None:intergenic | 30.0% | |
| TTGTAGATATGCTAGAATCA+CGG | + | chr6.3:6233222-6233241 | MS.gene20459:intron | 30.0% | |
| TTGTATTTACCATTCTTGTC+AGG | - | chr6.3:6232650-6232669 | None:intergenic | 30.0% | |
| TTTAACAATTGTTTGGCAAC+TGG | + | chr6.3:6233803-6233822 | MS.gene20459:intron | 30.0% | |
| TTTAATAGGTACCTTGAACA+AGG | + | chr6.3:6233738-6233757 | MS.gene20459:intron | 30.0% | |
| ! | AGATGTTAGACACAATGTTT+TGG | + | chr6.3:6234509-6234528 | MS.gene20459:intron | 30.0% |
| ! | TACCAACAATTTGTGGTTTT+AGG | - | chr6.3:6236027-6236046 | None:intergenic | 30.0% |
| ! | TAGAATTGTGAAAAAGCATG+TGG | - | chr6.3:6236400-6236419 | None:intergenic | 30.0% |
| ! | TCCAACTGGAAAATTTTCAT+CGG | + | chr6.3:6235979-6235998 | MS.gene20459:CDS | 30.0% |
| ! | TTGTTCTTTTGAATGTTGGT+TGG | - | chr6.3:6235530-6235549 | None:intergenic | 30.0% |
| !! | ATAGTGATGGATAAGAAATC+AGG | + | chr6.3:6236145-6236164 | MS.gene20459:CDS | 30.0% |
| !! | CCCAGGCTTTATAATAATTT+TGG | + | chr6.3:6235055-6235074 | MS.gene20459:intron | 30.0% |
| !!! | ATTATGTAAGCTGGTTTTGT+AGG | - | chr6.3:6233089-6233108 | None:intergenic | 30.0% |
| !!! | CATCGAATATTTTTTTGGGA+TGG | + | chr6.3:6233541-6233560 | MS.gene20459:intron | 30.0% |
| !!! | GTATGTGACACATTTTGATT+TGG | + | chr6.3:6233003-6233022 | MS.gene20459:intron | 30.0% |
| !!! | TGCAAATTTTTTTTTTGCCC+AGG | + | chr6.3:6235038-6235057 | MS.gene20459:intron | 30.0% |
| !!! | TGTGGTTTTAGGAAATCATA+TGG | - | chr6.3:6236016-6236035 | None:intergenic | 30.0% |
| AACCATGCTTATTGGAACTT+AGG | + | chr6.3:6235875-6235894 | MS.gene20459:CDS | 35.0% | |
| AACTTAGGAAACCATAACAG+TGG | + | chr6.3:6235890-6235909 | MS.gene20459:CDS | 35.0% | |
| AAGAATGATAAGGGAAAAGG+AGG | + | chr6.3:6236229-6236248 | MS.gene20459:CDS | 35.0% | |
| AAGACTTACAGTATATGCCT+TGG | - | chr6.3:6232848-6232867 | None:intergenic | 35.0% | |
| AATGTTGAATATCCCTGCAT+CGG | - | chr6.3:6233139-6233158 | None:intergenic | 35.0% | |
| ACAAGACTTGTAGAAACACA+CGG | + | chr6.3:6235410-6235429 | MS.gene20459:intron | 35.0% | |
| AGAATGATAAGGGAAAAGGA+GGG | + | chr6.3:6236230-6236249 | MS.gene20459:CDS | 35.0% | |
| AGACTTACAGTATATGCCTT+GGG | - | chr6.3:6232847-6232866 | None:intergenic | 35.0% | |
| AGAGGGGTTTCTCATATTTA+GGG | - | chr6.3:6234771-6234790 | None:intergenic | 35.0% | |
| AGGTTGAGTCATATAAGACT+AGG | - | chr6.3:6234696-6234715 | None:intergenic | 35.0% | |
| AGTCCTAGATTGAAATACAC+AGG | - | chr6.3:6234746-6234765 | None:intergenic | 35.0% | |
| AGTCTCCTAATCTATGTTAG+CGG | - | chr6.3:6235645-6235664 | None:intergenic | 35.0% | |
| AGTGATTGAGAGAAAATGAG+AGG | - | chr6.3:6234789-6234808 | None:intergenic | 35.0% | |
| AGTTATTGTGGGTTCTTTCA+TGG | - | chr6.3:6234150-6234169 | None:intergenic | 35.0% | |
| ATGAATTACAACTCAACCAG+CGG | + | chr6.3:6234847-6234866 | MS.gene20459:intron | 35.0% | |
| ATTATCAAGAGGCTTAGAGT+TGG | - | chr6.3:6235109-6235128 | None:intergenic | 35.0% | |
| ATTGTGTCTAACATCTGTTC+TGG | - | chr6.3:6234505-6234524 | None:intergenic | 35.0% | |
| ATTTACCATTCTTGTCAGGT+AGG | - | chr6.3:6232646-6232665 | None:intergenic | 35.0% | |
| CAATGGCTCAATCAATAAGA+AGG | + | chr6.3:6232529-6232548 | MS.gene20459:CDS | 35.0% | |
| CTAAAATGTTGCCACTGTTA+TGG | - | chr6.3:6235904-6235923 | None:intergenic | 35.0% | |
| GAAAGGTGATCTTACTTTGA+AGG | + | chr6.3:6232586-6232605 | MS.gene20459:CDS | 35.0% | |
| GACAATAACCTTATTCCAAC+TGG | + | chr6.3:6235965-6235984 | MS.gene20459:CDS | 35.0% | |
| GCACTATAAAATTGCAATCC+AGG | - | chr6.3:6236199-6236218 | None:intergenic | 35.0% | |
| GGAGCTAAGTTTACTCTAAA+TGG | + | chr6.3:6233986-6234005 | MS.gene20459:CDS | 35.0% | |
| GTGAAGAATGATAAGGGAAA+AGG | + | chr6.3:6236226-6236245 | MS.gene20459:CDS | 35.0% | |
| GTGATTGAGAGAAAATGAGA+GGG | - | chr6.3:6234788-6234807 | None:intergenic | 35.0% | |
| TATCTTCGCTCTATTCAAAC+TGG | + | chr6.3:6233063-6233082 | MS.gene20459:intron | 35.0% | |
| TCTTACCGCTAACATAGATT+AGG | + | chr6.3:6235637-6235656 | MS.gene20459:intron | 35.0% | |
| TGATTGAGAGAAAATGAGAG+GGG | - | chr6.3:6234787-6234806 | None:intergenic | 35.0% | |
| TTCCTAAGTTCCAATAAGCA+TGG | - | chr6.3:6235880-6235899 | None:intergenic | 35.0% | |
| TTGTGTCTAACATCTGTTCT+GGG | - | chr6.3:6234504-6234523 | None:intergenic | 35.0% | |
| TTTGTGTTAGTTGAGTTCAG+TGG | - | chr6.3:6235086-6235105 | None:intergenic | 35.0% | |
| ! | ACCGATGAAAATTTTCCAGT+TGG | - | chr6.3:6235983-6236002 | None:intergenic | 35.0% |
| ! | ATGTTATGATGCCTTGTTCA+AGG | - | chr6.3:6233752-6233771 | None:intergenic | 35.0% |
| ! | CTAAGCCTCTTGATAATCAA+TGG | + | chr6.3:6235112-6235131 | MS.gene20459:intron | 35.0% |
| ! | CTTTTTCTTACCTTCTCCTT+TGG | + | chr6.3:6233459-6233478 | MS.gene20459:intron | 35.0% |
| ! | GGCTTTTGCTTGCATAATTA+TGG | - | chr6.3:6235825-6235844 | None:intergenic | 35.0% |
| ! | GTGGAAAAGTATGTAAGAGA+AGG | + | chr6.3:6234327-6234346 | MS.gene20459:CDS | 35.0% |
| ! | GTTTTACTTGTTTGAAGACC+AGG | + | chr6.3:6233628-6233647 | MS.gene20459:intron | 35.0% |
| ! | TACTGGTGTAGGTTTGTTTA+GGG | - | chr6.3:6235846-6235865 | None:intergenic | 35.0% |
| ! | TACTTTGAAGGTCACTAACT+GGG | + | chr6.3:6232598-6232617 | MS.gene20459:CDS | 35.0% |
| ! | TGAAAAAGCATGTGGAACTT+TGG | - | chr6.3:6236392-6236411 | None:intergenic | 35.0% |
| ! | TTACTGGTGTAGGTTTGTTT+AGG | - | chr6.3:6235847-6235866 | None:intergenic | 35.0% |
| ! | TTACTTTGAAGGTCACTAAC+TGG | + | chr6.3:6232597-6232616 | MS.gene20459:CDS | 35.0% |
| !! | ACATGGGCTTTTTCTTCAAT+GGG | + | chr6.3:6235257-6235276 | MS.gene20459:intron | 35.0% |
| !! | TTCAGTTACCACAGTTTTGA+TGG | + | chr6.3:6234369-6234388 | MS.gene20459:CDS | 35.0% |
| AAAAAGCCCATGTGGATGAA+TGG | - | chr6.3:6235250-6235269 | None:intergenic | 40.0% | |
| AAAGGTTGCAGCTATAGTGA+TGG | + | chr6.3:6236132-6236151 | MS.gene20459:CDS | 40.0% | |
| AAGCTTAGTACTAATGCTCC+TGG | + | chr6.3:6236178-6236197 | MS.gene20459:CDS | 40.0% | |
| AGGGTTGCTAATAGAATTGG+AGG | + | chr6.3:6233965-6233984 | MS.gene20459:CDS | 40.0% | |
| ATACAGCCATTCATCCACAT+GGG | + | chr6.3:6235241-6235260 | MS.gene20459:intron | 40.0% | |
| ATTCTCAAGGTTCACACCAA+AGG | - | chr6.3:6233478-6233497 | None:intergenic | 40.0% | |
| CATTGAAGAAAAAGCCCATG+TGG | - | chr6.3:6235258-6235277 | None:intergenic | 40.0% | |
| CTTCTTCACCATCAAAACTG+TGG | - | chr6.3:6234380-6234399 | None:intergenic | 40.0% | |
| GAGAGGGGTTTCTCATATTT+AGG | - | chr6.3:6234772-6234791 | None:intergenic | 40.0% | |
| GAGGATTCAGTGATGTTCTT+TGG | + | chr6.3:6234301-6234320 | MS.gene20459:CDS | 40.0% | |
| GGAACCAATACTATTGAGAG+TGG | - | chr6.3:6234675-6234694 | None:intergenic | 40.0% | |
| GGTAGGGTTGCTAATAGAAT+TGG | + | chr6.3:6233962-6233981 | MS.gene20459:CDS | 40.0% | |
| GTAACAGTGAGCTACATTCT+AGG | + | chr6.3:6235785-6235804 | MS.gene20459:CDS | 40.0% | |
| GTTTCCATTACAGGATTTCC+TGG | + | chr6.3:6235752-6235771 | MS.gene20459:intron | 40.0% | |
| TATACAGCCATTCATCCACA+TGG | + | chr6.3:6235240-6235259 | MS.gene20459:intron | 40.0% | |
| TCTATTAGCAACCCTACCAA+CGG | - | chr6.3:6233960-6233979 | None:intergenic | 40.0% | |
| TCTTGGATATGATACTCCCA+AGG | + | chr6.3:6232828-6232847 | MS.gene20459:CDS | 40.0% | |
| TGACTGGATGGATATTCTCA+AGG | - | chr6.3:6233491-6233510 | None:intergenic | 40.0% | |
| TGAGAATATCCATCCAGTCA+TGG | + | chr6.3:6233491-6233510 | MS.gene20459:intron | 40.0% | |
| TGTGGATGAATGGCTGTATA+AGG | - | chr6.3:6235240-6235259 | None:intergenic | 40.0% | |
| TTAGTCCTACCTGACAAGAA+TGG | + | chr6.3:6232638-6232657 | MS.gene20459:CDS | 40.0% | |
| ! | AAAAGCATGTGGAACTTTGG+TGG | - | chr6.3:6236389-6236408 | None:intergenic | 40.0% |
| ! | ACTTTGAAGGTCACTAACTG+GGG | + | chr6.3:6232599-6232618 | MS.gene20459:CDS | 40.0% |
| ! | AGCCTCTTGATAATCAATGG+TGG | + | chr6.3:6235115-6235134 | MS.gene20459:intron | 40.0% |
| ! | CAGTGATGTTCTTTGGAAAG+TGG | + | chr6.3:6234308-6234327 | MS.gene20459:CDS | 40.0% |
| ! | GGAAAATTTTCATCGGTCGA+AGG | + | chr6.3:6235986-6236005 | MS.gene20459:CDS | 40.0% |
| ! | GTATGCTTCAAGGTATTTCC+AGG | - | chr6.3:6235327-6235346 | None:intergenic | 40.0% |
| ! | TAACATCTGTTCTGGGTGAA+GGG | - | chr6.3:6234497-6234516 | None:intergenic | 40.0% |
| !! | AGGTGAAAAGGCATTGAACA+AGG | - | chr6.3:6234716-6234735 | None:intergenic | 40.0% |
| !! | CACATGGGCTTTTTCTTCAA+TGG | + | chr6.3:6235256-6235275 | MS.gene20459:intron | 40.0% |
| !! | CATCTCAAGTTGATCCAATG+AGG | - | chr6.3:6233697-6233716 | None:intergenic | 40.0% |
| !! | TGTAGCTCACTGTTACTTTG+AGG | - | chr6.3:6235781-6235800 | None:intergenic | 40.0% |
| !!! | CACAGTTTTGATGGTGAAGA+AGG | + | chr6.3:6234378-6234397 | MS.gene20459:CDS | 40.0% |
| AAGGTTCACACCAAAGGAGA+AGG | - | chr6.3:6233472-6233491 | None:intergenic | 45.0% | |
| ACCACGTTCAGCACTTTGTT+TGG | + | chr6.3:6236264-6236283 | MS.gene20459:CDS | 45.0% | |
| AGAGAACGGATAACCCAGTT+CGG | + | chr6.3:6234604-6234623 | MS.gene20459:intron | 45.0% | |
| CGTGTGCTACAAGTTACTGT+GGG | - | chr6.3:6235387-6235406 | None:intergenic | 45.0% | |
| CTTCTCTTCTTAGCAGCTTC+TGG | + | chr6.3:6232500-6232519 | MS.gene20459:CDS | 45.0% | |
| GAAGGAAACAACACTCTCCA+TGG | + | chr6.3:6234034-6234053 | MS.gene20459:CDS | 45.0% | |
| GAGTGAAAGACCTTCAGAGT+AGG | - | chr6.3:6234640-6234659 | None:intergenic | 45.0% | |
| GCAGCTTCTGGATTTGTCAA+TGG | + | chr6.3:6232512-6232531 | MS.gene20459:CDS | 45.0% | |
| GTCACCAGGAAATCCTGTAA+TGG | - | chr6.3:6235759-6235778 | None:intergenic | 45.0% | |
| GTGTTAGTTGAGTTCAGTGG+TGG | - | chr6.3:6235083-6235102 | None:intergenic | 45.0% | |
| ! | AACATCTGTTCTGGGTGAAG+GGG | - | chr6.3:6234496-6234515 | None:intergenic | 45.0% |
| ! | CGCCACCATTGATTATCAAG+AGG | - | chr6.3:6235120-6235139 | None:intergenic | 45.0% |
| ! | CTAACATCTGTTCTGGGTGA+AGG | - | chr6.3:6234498-6234517 | None:intergenic | 45.0% |
| !! | ACTGTTACTTTGAGGTCACC+AGG | - | chr6.3:6235773-6235792 | None:intergenic | 45.0% |
| !! | TCATACTTTGGAGCAACCGT+TGG | + | chr6.3:6233941-6233960 | MS.gene20459:CDS | 45.0% |
| !! | TCCAAACAAAGTGCTGAACG+TGG | - | chr6.3:6236268-6236287 | None:intergenic | 45.0% |
| AAAATATTTGGGCCGGAGCC+CGG | - | chr6.3:6234906-6234925 | None:intergenic | 50.0% | |
| AAGTGGTGACCATGACTGGA+TGG | - | chr6.3:6233503-6233522 | None:intergenic | 50.0% | |
| ACACAAGTGGTGACCATGAC+TGG | - | chr6.3:6233507-6233526 | None:intergenic | 50.0% | |
| GCGTATGTACAACCGATGCA+GGG | + | chr6.3:6233124-6233143 | MS.gene20459:intron | 50.0% | |
| GCGTGTGCTACAAGTTACTG+TGG | - | chr6.3:6235388-6235407 | None:intergenic | 50.0% | |
| TGCAACGTCACCTACTCTGA+AGG | + | chr6.3:6234627-6234646 | MS.gene20459:intron | 50.0% | |
| ! | AATCAATGGTGGCGCTAGTG+TGG | + | chr6.3:6235126-6235145 | MS.gene20459:intron | 50.0% |
| !! | ACTTTGGAGCAACCGTTGGT+AGG | + | chr6.3:6233945-6233964 | MS.gene20459:CDS | 50.0% |
| !! | CTTTGGAGCAACCGTTGGTA+GGG | + | chr6.3:6233946-6233965 | MS.gene20459:CDS | 50.0% |
| AAATATTTGGGCCGGAGCCC+GGG | - | chr6.3:6234905-6234924 | None:intergenic | 55.0% | |
| AGGTGACGTTGCACCGAACT+GGG | - | chr6.3:6234620-6234639 | None:intergenic | 55.0% | |
| CGCGTATGTACAACCGATGC+AGG | + | chr6.3:6233123-6233142 | MS.gene20459:intron | 55.0% | |
| CTCAACCAGCGGCGATTCTA+AGG | + | chr6.3:6234858-6234877 | MS.gene20459:intron | 55.0% | |
| GGATCGTCGCGATTCTGACA+TGG | + | chr6.3:6233299-6233318 | MS.gene20459:intron | 55.0% | |
| TAGGTGACGTTGCACCGAAC+TGG | - | chr6.3:6234621-6234640 | None:intergenic | 55.0% | |
| !! | ATTCTAAGGCCCGGCGAGCC+CGG | + | chr6.3:6234872-6234891 | MS.gene20459:intron | 65.0% |
| !! | CCAGCGGCGATTCTAAGGCC+CGG | + | chr6.3:6234863-6234882 | MS.gene20459:intron | 65.0% |
| CCGGGCCTTAGAATCGCCGC+TGG | - | chr6.3:6234866-6234885 | None:intergenic | 70.0% | |
| CCGGACACTTGCCCGGGCTC+CGG | + | chr6.3:6234891-6234910 | MS.gene20459:intron | 75.0% | |
| CCGGAGCCCGGGCAAGTGTC+CGG | - | chr6.3:6234894-6234913 | None:intergenic | 75.0% | |
| CGGAGCCCGGGCAAGTGTCC+GGG | - | chr6.3:6234893-6234912 | None:intergenic | 75.0% | |
| GCGAGCCCGGACACTTGCCC+GGG | + | chr6.3:6234885-6234904 | MS.gene20459:intron | 75.0% | |
| GGCAAGTGTCCGGGCTCGCC+GGG | - | chr6.3:6234884-6234903 | None:intergenic | 75.0% | |
| GGCGAGCCCGGACACTTGCC+CGG | + | chr6.3:6234884-6234903 | MS.gene20459:intron | 75.0% | |
| GGGCAAGTGTCCGGGCTCGC+CGG | - | chr6.3:6234885-6234904 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 6232473 | 6236420 | 6232473 | ID=MS.gene20459 |
| chr6.3 | mRNA | 6232473 | 6236420 | 6232473 | ID=MS.gene20459.t1;Parent=MS.gene20459 |
| chr6.3 | exon | 6232473 | 6232659 | 6232473 | ID=MS.gene20459.t1.exon1;Parent=MS.gene20459.t1 |
| chr6.3 | CDS | 6232473 | 6232659 | 6232473 | ID=cds.MS.gene20459.t1;Parent=MS.gene20459.t1 |
| chr6.3 | exon | 6232809 | 6232858 | 6232809 | ID=MS.gene20459.t1.exon2;Parent=MS.gene20459.t1 |
| chr6.3 | CDS | 6232809 | 6232858 | 6232809 | ID=cds.MS.gene20459.t1;Parent=MS.gene20459.t1 |
| chr6.3 | exon | 6233932 | 6234055 | 6233932 | ID=MS.gene20459.t1.exon3;Parent=MS.gene20459.t1 |
| chr6.3 | CDS | 6233932 | 6234055 | 6233932 | ID=cds.MS.gene20459.t1;Parent=MS.gene20459.t1 |
| chr6.3 | exon | 6234292 | 6234399 | 6234292 | ID=MS.gene20459.t1.exon4;Parent=MS.gene20459.t1 |
| chr6.3 | CDS | 6234292 | 6234399 | 6234292 | ID=cds.MS.gene20459.t1;Parent=MS.gene20459.t1 |
| chr6.3 | exon | 6235765 | 6236420 | 6235765 | ID=MS.gene20459.t1.exon5;Parent=MS.gene20459.t1 |
| chr6.3 | CDS | 6235765 | 6236420 | 6235765 | ID=cds.MS.gene20459.t1;Parent=MS.gene20459.t1 |
| Gene Sequence |
| Protein sequence |
