Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20545.t1 | XP_024640456.1 | 77 | 113 | 5 | 2 | 181 | 272 | 1039 | 1151 | 7.40E-35 | 157.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20545.t1 | Q7G9P4 | 58.6 | 111 | 26 | 1 | 182 | 272 | 1000 | 1110 | 9.8e-28 | 125.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20545.t1 | A0A396I152 | 77.0 | 113 | 5 | 2 | 181 | 272 | 1039 | 1151 | 5.3e-35 | 157.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058294 | MS.gene20545 | 0.807779 | 4.28E-50 | -1.69E-46 |
| MS.gene058515 | MS.gene20545 | 0.825099 | 5.64E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20545.t1 | MTR_5g087410 | 58.273 | 139 | 32 | 2 | 154 | 272 | 1018 | 1150 | 1.93e-40 | 150 |
| MS.gene20545.t1 | MTR_5g087410 | 58.273 | 139 | 32 | 2 | 154 | 272 | 1018 | 1150 | 2.46e-40 | 150 |
| MS.gene20545.t1 | MTR_5g093860 | 66.667 | 111 | 25 | 1 | 80 | 178 | 189 | 299 | 4.13e-39 | 145 |
| MS.gene20545.t1 | MTR_5g087390 | 63.393 | 112 | 6 | 2 | 181 | 272 | 1039 | 1135 | 4.76e-32 | 126 |
| MS.gene20545.t1 | MTR_1g076700 | 34.615 | 156 | 86 | 4 | 36 | 176 | 140 | 294 | 2.43e-21 | 94.7 |
| MS.gene20545.t1 | MTR_6g061690 | 41.818 | 110 | 54 | 1 | 77 | 176 | 187 | 296 | 8.77e-21 | 93.2 |
| MS.gene20545.t1 | MTR_3g085440 | 39.655 | 116 | 59 | 2 | 74 | 178 | 188 | 303 | 2.02e-16 | 80.1 |
| MS.gene20545.t1 | MTR_3g085440 | 39.655 | 116 | 59 | 2 | 74 | 178 | 188 | 303 | 2.13e-16 | 79.3 |
| MS.gene20545.t1 | MTR_8g041400 | 36.923 | 130 | 66 | 2 | 65 | 178 | 169 | 298 | 6.80e-16 | 78.2 |
| MS.gene20545.t1 | MTR_1g038840 | 35.714 | 112 | 60 | 1 | 77 | 176 | 155 | 266 | 2.24e-15 | 76.6 |
| MS.gene20545.t1 | MTR_1g038840 | 35.714 | 112 | 60 | 1 | 77 | 176 | 195 | 306 | 2.70e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20545.t1 | AT5G55230 | 60.360 | 111 | 32 | 1 | 80 | 178 | 188 | 298 | 1.51e-34 | 132 |
| MS.gene20545.t1 | AT5G55230 | 60.360 | 111 | 32 | 1 | 80 | 178 | 188 | 298 | 1.51e-34 | 132 |
| MS.gene20545.t1 | AT5G55230 | 59.292 | 113 | 34 | 1 | 80 | 180 | 188 | 300 | 1.58e-34 | 132 |
| MS.gene20545.t1 | AT2G27150 | 58.559 | 111 | 26 | 1 | 182 | 272 | 884 | 994 | 5.70e-34 | 132 |
| MS.gene20545.t1 | AT2G27150 | 58.559 | 111 | 26 | 1 | 182 | 272 | 884 | 994 | 6.81e-34 | 131 |
| MS.gene20545.t1 | AT2G27150 | 58.559 | 111 | 26 | 1 | 182 | 272 | 884 | 994 | 6.81e-34 | 131 |
| MS.gene20545.t1 | AT2G27150 | 58.559 | 111 | 26 | 1 | 182 | 272 | 1000 | 1110 | 7.72e-34 | 131 |
| MS.gene20545.t1 | AT2G27150 | 58.559 | 111 | 26 | 1 | 182 | 272 | 1000 | 1110 | 8.01e-34 | 131 |
| MS.gene20545.t1 | AT2G27150 | 58.559 | 111 | 26 | 1 | 182 | 272 | 1000 | 1110 | 8.01e-34 | 131 |
| MS.gene20545.t1 | AT3G43600 | 53.153 | 111 | 32 | 1 | 182 | 272 | 989 | 1099 | 1.98e-30 | 121 |
| MS.gene20545.t1 | AT5G20960 | 53.846 | 117 | 33 | 2 | 182 | 277 | 1032 | 1148 | 3.52e-28 | 115 |
| MS.gene20545.t1 | AT5G20960 | 53.846 | 117 | 33 | 2 | 182 | 277 | 1032 | 1148 | 3.52e-28 | 115 |
| MS.gene20545.t1 | AT4G26760 | 55.856 | 111 | 37 | 1 | 80 | 178 | 188 | 298 | 9.62e-28 | 113 |
| MS.gene20545.t1 | AT1G04580 | 50.450 | 111 | 35 | 1 | 182 | 272 | 1002 | 1112 | 1.02e-27 | 113 |
| MS.gene20545.t1 | AT5G51600 | 34.454 | 119 | 66 | 3 | 73 | 181 | 185 | 301 | 1.73e-15 | 77.4 |
| MS.gene20545.t1 | AT5G62250 | 34.906 | 106 | 59 | 1 | 83 | 178 | 195 | 300 | 2.52e-15 | 76.6 |
| MS.gene20545.t1 | AT5G62250 | 34.906 | 106 | 59 | 1 | 83 | 178 | 195 | 300 | 2.52e-15 | 76.6 |
| MS.gene20545.t1 | AT3G60840 | 33.858 | 127 | 75 | 1 | 59 | 176 | 167 | 293 | 1.61e-13 | 71.2 |
| MS.gene20545.t1 | AT2G01910 | 35.088 | 114 | 62 | 2 | 77 | 178 | 195 | 308 | 4.32e-13 | 70.1 |
| MS.gene20545.t1 | AT2G01910 | 35.088 | 114 | 62 | 2 | 77 | 178 | 154 | 267 | 4.57e-13 | 70.1 |
| MS.gene20545.t1 | AT1G14690 | 33.333 | 114 | 64 | 3 | 77 | 178 | 195 | 308 | 8.37e-11 | 63.2 |
| MS.gene20545.t1 | AT1G14690 | 33.333 | 114 | 64 | 3 | 77 | 178 | 195 | 308 | 8.37e-11 | 63.2 |
Find 67 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTCCCACTGAGAAATT+TGG | 0.144616 | 6.3:+5256251 | None:intergenic |
| TTGAAATTGGTTAGGGTCTC+TGG | 0.250683 | 6.3:-5254975 | MS.gene20545:intron |
| TCATGGCTCTGAAGATTATA+TGG | 0.257216 | 6.3:-5256679 | MS.gene20545:CDS |
| GGAGAGAAATCATGGATCTA+TGG | 0.325568 | 6.3:-5256236 | MS.gene20545:CDS |
| GTGGGAGACACTTATTCTTC+AGG | 0.357039 | 6.3:-5254715 | MS.gene20545:CDS |
| ATCTTACCTTGCTCTAAGAT+TGG | 0.369359 | 6.3:+5256200 | None:intergenic |
| GGAAAAGCTGCAGGAAGAAA+TGG | 0.373969 | 6.3:-5254748 | MS.gene20545:CDS |
| AATTGATATGTGGAATCTAA+TGG | 0.389272 | 6.3:-5255480 | MS.gene20545:CDS |
| TCGTGCAGGTATATATCTCT+TGG | 0.392212 | 6.3:-5255893 | MS.gene20545:CDS |
| TAGGCTTAGCTGCAATATCT+TGG | 0.415260 | 6.3:-5254788 | MS.gene20545:CDS |
| GAAGTCTCTTGGACAAAGTA+AGG | 0.416398 | 6.3:-5254894 | MS.gene20545:CDS |
| CGTGCAGGTATATATCTCTT+GGG | 0.432627 | 6.3:-5255892 | MS.gene20545:CDS |
| CATGATATATGTGATGTTCT+TGG | 0.439270 | 6.3:-5255809 | MS.gene20545:CDS |
| ACAATTCAATGTGATGGAAC+TGG | 0.445668 | 6.3:-5254916 | MS.gene20545:CDS |
| GTGTGGATGAACCTCAACTA+TGG | 0.449193 | 6.3:+5255769 | None:intergenic |
| GAGGTTCATCCACACTTGAA+TGG | 0.457541 | 6.3:-5255761 | MS.gene20545:CDS |
| TACTACTGGCTCCCTTGCTC+AGG | 0.460060 | 6.3:-5255384 | MS.gene20545:CDS |
| CTTCTAAGTTAATTGATATG+TGG | 0.460129 | 6.3:-5255490 | MS.gene20545:CDS |
| TGATGGAACTGGAAGTCTCT+TGG | 0.469321 | 6.3:-5254905 | MS.gene20545:CDS |
| CTGGACAAAGGTTAAACAAA+TGG | 0.469843 | 6.3:-5254956 | MS.gene20545:CDS |
| CAGCGTCCAACATATGTTCT+CGG | 0.482891 | 6.3:+5255834 | None:intergenic |
| GATACAATGAGCTTGATTCA+AGG | 0.486376 | 6.3:-5254859 | MS.gene20545:CDS |
| TCTCAGTGGGAGAGAAATCA+TGG | 0.490085 | 6.3:-5256244 | MS.gene20545:CDS |
| GACAGAAGCTGAGATATTGC+AGG | 0.491215 | 6.3:+5255418 | None:intergenic |
| GAAAAGCTGCAGGAAGAAAT+GGG | 0.492737 | 6.3:-5254747 | MS.gene20545:CDS |
| TCTAATGGATACTCCTCCCT+TGG | 0.495145 | 6.3:-5255465 | MS.gene20545:CDS |
| GCTGCAATATCTTGGTTGAA+AGG | 0.499437 | 6.3:-5254780 | MS.gene20545:CDS |
| ATGAACCTCAACTATGGTAC+TGG | 0.505440 | 6.3:+5255775 | None:intergenic |
| ATTATATGGATTGTCATCAA+TGG | 0.514898 | 6.3:-5256665 | MS.gene20545:CDS |
| AAGAAATGGGCTCTATCAAG+TGG | 0.516380 | 6.3:-5254734 | MS.gene20545:CDS |
| TACAATGAGCTTGATTCAAG+GGG | 0.516904 | 6.3:-5254857 | MS.gene20545:CDS |
| TGCTCAGGCTCTGATTATGC+AGG | 0.517780 | 6.3:-5255369 | MS.gene20545:intron |
| CTCGGTACAATTCAATGTGA+TGG | 0.525942 | 6.3:-5254922 | MS.gene20545:CDS |
| GTCGATGAAGTCACTACTAC+TGG | 0.530283 | 6.3:-5255398 | MS.gene20545:CDS |
| AACAGATTCCTTTCCAAGGG+AGG | 0.535773 | 6.3:+5255452 | None:intergenic |
| AGGCAAGCTGCGAAGCAGTT+AGG | 0.536206 | 6.3:-5254807 | MS.gene20545:CDS |
| GTTAAACAGATTCCTTTCCA+AGG | 0.538925 | 6.3:+5255448 | None:intergenic |
| TTGAAGCAAGGAAAAGCTGC+AGG | 0.544145 | 6.3:-5254757 | MS.gene20545:CDS |
| ACTTGAATGGTTCTACTGCT+AGG | 0.551657 | 6.3:-5255748 | MS.gene20545:CDS |
| ATACAATGAGCTTGATTCAA+GGG | 0.552303 | 6.3:-5254858 | MS.gene20545:CDS |
| AGATTGCGATGCTTTCGTGC+AGG | 0.561615 | 6.3:-5255907 | MS.gene20545:CDS |
| TATATGTGATGTTCTTGGTA+TGG | 0.566793 | 6.3:-5255804 | MS.gene20545:CDS |
| TTAAACAGATTCCTTTCCAA+GGG | 0.568927 | 6.3:+5255449 | None:intergenic |
| AGAGTCAGTTGAATAACAGC+TGG | 0.569267 | 6.3:+5255063 | None:intergenic |
| CAAATGGCTGCATTCGCCCT+CGG | 0.569968 | 6.3:-5254940 | MS.gene20545:CDS |
| GTAGTTCCAAATTTCTCAGT+GGG | 0.570296 | 6.3:-5256257 | MS.gene20545:CDS |
| CTGACTCTAAGACCAACTCC+TGG | 0.572781 | 6.3:-5255048 | MS.gene20545:CDS |
| TGGATACTCCTCCCTTGGAA+AGG | 0.574676 | 6.3:-5255460 | MS.gene20545:CDS |
| GCATAATCAGAGCCTGAGCA+AGG | 0.578122 | 6.3:+5255372 | None:intergenic |
| GAGAGAAATCATGGATCTAT+GGG | 0.580825 | 6.3:-5256235 | MS.gene20545:CDS |
| TTTGCACCAATCTTAGAGCA+AGG | 0.597008 | 6.3:-5256206 | MS.gene20545:intron |
| CTCCTCCAGTACCATAGTTG+AGG | 0.599391 | 6.3:-5255780 | MS.gene20545:CDS |
| ATCACATTGAATTGTACCGA+GGG | 0.603230 | 6.3:+5254924 | None:intergenic |
| TTGGTTGAAAGGTTGAAGCA+AGG | 0.610316 | 6.3:-5254769 | MS.gene20545:CDS |
| AAGTCTCTTGGACAAAGTAA+GGG | 0.620064 | 6.3:-5254893 | MS.gene20545:CDS |
| TGGTTAGGGTCTCTGGACAA+AGG | 0.622371 | 6.3:-5254968 | MS.gene20545:intron |
| TATGGATTGTCATCAATGGA+AGG | 0.622786 | 6.3:-5256661 | MS.gene20545:intron |
| AACCTCAACTATGGTACTGG+AGG | 0.628142 | 6.3:+5255778 | None:intergenic |
| TTTGAGCCGAGAACATATGT+TGG | 0.628498 | 6.3:-5255840 | MS.gene20545:CDS |
| TTATGATTGATAGGTTGGAG+TGG | 0.632457 | 6.3:-5256425 | MS.gene20545:intron |
| TGCTGGGAGTACTACATCAG+AGG | 0.633909 | 6.3:-5254827 | MS.gene20545:CDS |
| CATAATCAGAGCCTGAGCAA+GGG | 0.635996 | 6.3:+5255373 | None:intergenic |
| GCAGTAGAACCATTCAAGTG+TGG | 0.662087 | 6.3:+5255752 | None:intergenic |
| AGAAATGGGCTCTATCAAGT+GGG | 0.663622 | 6.3:-5254733 | MS.gene20545:CDS |
| CATCACATTGAATTGTACCG+AGG | 0.670966 | 6.3:+5254923 | None:intergenic |
| GGTAGTTCCAAATTTCTCAG+TGG | 0.673691 | 6.3:-5256258 | MS.gene20545:CDS |
| ACAATGAGCTTGATTCAAGG+GGG | 0.723256 | 6.3:-5254856 | MS.gene20545:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAATTCAAAATATTTG+AGG | + | chr6.3:5255773-5255792 | None:intergenic | 15.0% |
| !!! | TATTTGTAATTTTTTGCATA+CGG | - | chr6.3:5255698-5255717 | MS.gene20545:CDS | 15.0% |
| !! | ATATTAGTACTTGGAAAAAA+GGG | - | chr6.3:5256246-5256265 | MS.gene20545:CDS | 20.0% |
| !! | ATATTCATGTTTATAACACT+AGG | - | chr6.3:5255736-5255755 | MS.gene20545:CDS | 20.0% |
| !! | TATGATAATTGAGAAAGAAT+TGG | - | chr6.3:5255391-5255410 | MS.gene20545:CDS | 20.0% |
| !! | TGAAGTTCTTAAATTTCTAA+TGG | - | chr6.3:5254768-5254787 | MS.gene20545:CDS | 20.0% |
| !!! | AAATAAGTTTTTGCTGATAT+TGG | - | chr6.3:5254874-5254893 | MS.gene20545:CDS | 20.0% |
| !!! | ATTTTGAATTCATTTCTGAT+TGG | - | chr6.3:5255778-5255797 | MS.gene20545:CDS | 20.0% |
| !!! | GTTAGAAATTCATATTTTCT+TGG | - | chr6.3:5255240-5255259 | MS.gene20545:intron | 20.0% |
| ! | AATACTAATATCTACACAAC+TGG | + | chr6.3:5254809-5254828 | None:intergenic | 25.0% |
| ! | AATTGATATGTGGAATCTAA+TGG | - | chr6.3:5255866-5255885 | MS.gene20545:CDS | 25.0% |
| ! | CTAAATAAGAACTAAGTCAA+TGG | + | chr6.3:5256218-5256237 | None:intergenic | 25.0% |
| ! | CTTCTAAGTTAATTGATATG+TGG | - | chr6.3:5255856-5255875 | MS.gene20545:CDS | 25.0% |
| ! | GATATTAGTACTTGGAAAAA+AGG | - | chr6.3:5256245-5256264 | MS.gene20545:CDS | 25.0% |
| ! | TATGTTTATGATTGATAGGT+TGG | - | chr6.3:5254916-5254935 | MS.gene20545:CDS | 25.0% |
| ! | TATTAGTACTTGGAAAAAAG+GGG | - | chr6.3:5256247-5256266 | MS.gene20545:CDS | 25.0% |
| ! | TGGTTATGTTTATGATTGAT+AGG | - | chr6.3:5254912-5254931 | MS.gene20545:CDS | 25.0% |
| !! | ATTATATGGATTGTCATCAA+TGG | - | chr6.3:5254681-5254700 | MS.gene20545:CDS | 25.0% |
| !!! | ATTGGTAATGTTATGTGATT+TGG | - | chr6.3:5254892-5254911 | MS.gene20545:CDS | 25.0% |
| !!! | TATTTTTTTGAAGGTTGAAG+AGG | - | chr6.3:5256069-5256088 | MS.gene20545:intron | 25.0% |
| !!! | TGATGCACAATTTGTTTTAA+AGG | - | chr6.3:5254713-5254732 | MS.gene20545:CDS | 25.0% |
| AATTGAGAAAGAATTGGCAA+AGG | - | chr6.3:5255397-5255416 | MS.gene20545:CDS | 30.0% | |
| ATACAATGAGCTTGATTCAA+GGG | - | chr6.3:5256488-5256507 | MS.gene20545:intron | 30.0% | |
| CATCCATTGGGATTATAAAA+TGG | + | chr6.3:5254971-5254990 | None:intergenic | 30.0% | |
| CATGATATATGTGATGTTCT+TGG | - | chr6.3:5255537-5255556 | MS.gene20545:intron | 30.0% | |
| GACATGATGATATTAGTACT+TGG | - | chr6.3:5256237-5256256 | MS.gene20545:CDS | 30.0% | |
| TATATGTGATGTTCTTGGTA+TGG | - | chr6.3:5255542-5255561 | MS.gene20545:intron | 30.0% | |
| TGAAAGACATTAAAAAGCAG+AGG | - | chr6.3:5255643-5255662 | MS.gene20545:intron | 30.0% | |
| TTAAACAGATTCCTTTCCAA+GGG | + | chr6.3:5255900-5255919 | None:intergenic | 30.0% | |
| TTTATAATCCCAATGGATGA+TGG | - | chr6.3:5254972-5254991 | MS.gene20545:intron | 30.0% | |
| ! | ATATGTCTTAATGGCATTGA+AGG | - | chr6.3:5255067-5255086 | MS.gene20545:CDS | 30.0% |
| ! | GACATTTTGTATCAAAGAGA+AGG | - | chr6.3:5254943-5254962 | MS.gene20545:CDS | 30.0% |
| ! | GTACCATTTTATAATCCCAA+TGG | - | chr6.3:5254965-5254984 | MS.gene20545:intron | 30.0% |
| ! | TAATCAGTTAGCGTAACTTT+TGG | + | chr6.3:5256039-5256058 | None:intergenic | 30.0% |
| !! | AAAGAGCTTCTGAAGTTTAA+AGG | - | chr6.3:5256005-5256024 | MS.gene20545:intron | 30.0% |
| !! | CTTCTGAAGTTTAAAGGTTT+GGG | - | chr6.3:5256011-5256030 | MS.gene20545:intron | 30.0% |
| !!! | TTGTAATTTTTTGCATACGG+TGG | - | chr6.3:5255701-5255720 | MS.gene20545:CDS | 30.0% |
| AAGTCTCTTGGACAAAGTAA+GGG | - | chr6.3:5256453-5256472 | MS.gene20545:intron | 35.0% | |
| ATCACATTGAATTGTACCGA+GGG | + | chr6.3:5256425-5256444 | None:intergenic | 35.0% | |
| CATGTTTGGATATTTGCACA+AGG | - | chr6.3:5255295-5255314 | MS.gene20545:intron | 35.0% | |
| CTGGACAAAGGTTAAACAAA+TGG | - | chr6.3:5256390-5256409 | MS.gene20545:intron | 35.0% | |
| CTTGTGCAAATATCCAAACA+TGG | + | chr6.3:5255297-5255316 | None:intergenic | 35.0% | |
| GAGAGAAATCATGGATCTAT+GGG | - | chr6.3:5255111-5255130 | MS.gene20545:intron | 35.0% | |
| GATACAATGAGCTTGATTCA+AGG | - | chr6.3:5256487-5256506 | MS.gene20545:intron | 35.0% | |
| GATCAGAGTCATCTATTACA+TGG | - | chr6.3:5255013-5255032 | MS.gene20545:intron | 35.0% | |
| GGTGGAATTGAAATTGGTTA+GGG | - | chr6.3:5256364-5256383 | MS.gene20545:intron | 35.0% | |
| GTAGTTCCAAATTTCTCAGT+GGG | - | chr6.3:5255089-5255108 | MS.gene20545:CDS | 35.0% | |
| GTGATTCATTGCAATGGTTA+TGG | - | chr6.3:5255037-5255056 | MS.gene20545:intron | 35.0% | |
| GTTAAACAGATTCCTTTCCA+AGG | + | chr6.3:5255901-5255920 | None:intergenic | 35.0% | |
| TACAATGAGCTTGATTCAAG+GGG | - | chr6.3:5256489-5256508 | MS.gene20545:intron | 35.0% | |
| TGCCATTAAGACATATCACA+TGG | + | chr6.3:5255063-5255082 | None:intergenic | 35.0% | |
| TGGAAAAGTGAGTATTCTGT+CGG | - | chr6.3:5256318-5256337 | MS.gene20545:intron | 35.0% | |
| TGGTGGAATTGAAATTGGTT+AGG | - | chr6.3:5256363-5256382 | MS.gene20545:intron | 35.0% | |
| ! | ACAATTCAATGTGATGGAAC+TGG | - | chr6.3:5256430-5256449 | MS.gene20545:intron | 35.0% |
| ! | TATGGATTGTCATCAATGGA+AGG | - | chr6.3:5254685-5254704 | MS.gene20545:CDS | 35.0% |
| ! | TTATGATTGATAGGTTGGAG+TGG | - | chr6.3:5254921-5254940 | MS.gene20545:CDS | 35.0% |
| !! | ATCTTACCTTGCTCTAAGAT+TGG | + | chr6.3:5255149-5255168 | None:intergenic | 35.0% |
| !! | GAAGTTGGTGGAATTGAAAT+TGG | - | chr6.3:5256358-5256377 | MS.gene20545:intron | 35.0% |
| !! | GCTTCTGAAGTTTAAAGGTT+TGG | - | chr6.3:5256010-5256029 | MS.gene20545:intron | 35.0% |
| !! | GTGAATTAGTTTGCCATGTT+TGG | - | chr6.3:5255281-5255300 | MS.gene20545:intron | 35.0% |
| !!! | AAGAATTGGCAAAGGTGTTT+TGG | - | chr6.3:5255405-5255424 | MS.gene20545:CDS | 35.0% |
| !!! | TCTGATTGGCTTTTAGTCTA+TGG | - | chr6.3:5255792-5255811 | MS.gene20545:CDS | 35.0% |
| !!! | TTTTTTGAAGGTTGAAGAGG+AGG | - | chr6.3:5256072-5256091 | MS.gene20545:intron | 35.0% |
| AAAGTGAGTATTCTGTCGGA+TGG | - | chr6.3:5256322-5256341 | MS.gene20545:intron | 40.0% | |
| ACAATGAGCTTGATTCAAGG+GGG | - | chr6.3:5256490-5256509 | MS.gene20545:intron | 40.0% | |
| AGAGTCAGTTGAATAACAGC+TGG | + | chr6.3:5256286-5256305 | None:intergenic | 40.0% | |
| ATGAACCTCAACTATGGTAC+TGG | + | chr6.3:5255574-5255593 | None:intergenic | 40.0% | |
| CATCACATTGAATTGTACCG+AGG | + | chr6.3:5256426-5256445 | None:intergenic | 40.0% | |
| CATGGTGTGATTCATTGCAA+TGG | - | chr6.3:5255031-5255050 | MS.gene20545:intron | 40.0% | |
| CGTGCAGGTATATATCTCTT+GGG | - | chr6.3:5255454-5255473 | MS.gene20545:CDS | 40.0% | |
| CTCGGTACAATTCAATGTGA+TGG | - | chr6.3:5256424-5256443 | MS.gene20545:intron | 40.0% | |
| GAAAAGCTGCAGGAAGAAAT+GGG | - | chr6.3:5256599-5256618 | MS.gene20545:intron | 40.0% | |
| GAAGTCTCTTGGACAAAGTA+AGG | - | chr6.3:5256452-5256471 | MS.gene20545:intron | 40.0% | |
| GCTGCAATATCTTGGTTGAA+AGG | - | chr6.3:5256566-5256585 | MS.gene20545:intron | 40.0% | |
| GCTTAAAATAAGCAGGGTGA+AGG | - | chr6.3:5256111-5256130 | MS.gene20545:intron | 40.0% | |
| GGAGAGAAATCATGGATCTA+TGG | - | chr6.3:5255110-5255129 | MS.gene20545:intron | 40.0% | |
| GGCCATGTGATATGTCTTAA+TGG | - | chr6.3:5255058-5255077 | MS.gene20545:CDS | 40.0% | |
| GGTAGTTCCAAATTTCTCAG+TGG | - | chr6.3:5255088-5255107 | MS.gene20545:CDS | 40.0% | |
| TAAAAAGCAGAGGCTACACA+AGG | - | chr6.3:5255653-5255672 | MS.gene20545:intron | 40.0% | |
| TAGGCTTAGCTGCAATATCT+TGG | - | chr6.3:5256558-5256577 | MS.gene20545:intron | 40.0% | |
| TATGCCATCCATCATCCATT+GGG | + | chr6.3:5254983-5255002 | None:intergenic | 40.0% | |
| TCGTGCAGGTATATATCTCT+TGG | - | chr6.3:5255453-5255472 | MS.gene20545:CDS | 40.0% | |
| TTATGCCATCCATCATCCAT+TGG | + | chr6.3:5254984-5255003 | None:intergenic | 40.0% | |
| TTCTCTCCCACTGAGAAATT+TGG | + | chr6.3:5255098-5255117 | None:intergenic | 40.0% | |
| TTGAAATTGGTTAGGGTCTC+TGG | - | chr6.3:5256371-5256390 | MS.gene20545:intron | 40.0% | |
| TTGGTTGAAAGGTTGAAGCA+AGG | - | chr6.3:5256577-5256596 | MS.gene20545:intron | 40.0% | |
| TTTGAGCCGAGAACATATGT+TGG | - | chr6.3:5255506-5255525 | MS.gene20545:CDS | 40.0% | |
| TTTGCACCAATCTTAGAGCA+AGG | - | chr6.3:5255140-5255159 | MS.gene20545:intron | 40.0% | |
| ! | AAGAAATGGGCTCTATCAAG+TGG | - | chr6.3:5256612-5256631 | MS.gene20545:intron | 40.0% |
| ! | ACTTGAATGGTTCTACTGCT+AGG | - | chr6.3:5255598-5255617 | MS.gene20545:intron | 40.0% |
| ! | AGAAATGGGCTCTATCAAGT+GGG | - | chr6.3:5256613-5256632 | MS.gene20545:intron | 40.0% |
| ! | TGACCGGCTTAAAATAAGCA+GGG | - | chr6.3:5256105-5256124 | MS.gene20545:intron | 40.0% |
| ! | TTGACCGGCTTAAAATAAGC+AGG | - | chr6.3:5256104-5256123 | MS.gene20545:intron | 40.0% |
| !! | ATACTCACTTTTCCAGGAGT+TGG | + | chr6.3:5256313-5256332 | None:intergenic | 40.0% |
| !! | GACAGAATACTCACTTTTCC+AGG | + | chr6.3:5256319-5256338 | None:intergenic | 40.0% |
| !! | TAATCCCAATGGATGATGGA+TGG | - | chr6.3:5254976-5254995 | MS.gene20545:intron | 40.0% |
| !!! | TCACCCTGCTTATTTTAAGC+CGG | + | chr6.3:5256111-5256130 | None:intergenic | 40.0% |
| !!! | TTGGCAAAGGTGTTTTGGTT+TGG | - | chr6.3:5255410-5255429 | MS.gene20545:CDS | 40.0% |
| AACAGATTCCTTTCCAAGGG+AGG | + | chr6.3:5255897-5255916 | None:intergenic | 45.0% | |
| CAGCGTCCAACATATGTTCT+CGG | + | chr6.3:5255515-5255534 | None:intergenic | 45.0% | |
| CATAATCAGAGCCTGAGCAA+GGG | + | chr6.3:5255976-5255995 | None:intergenic | 45.0% | |
| GACAGAAGCTGAGATATTGC+AGG | + | chr6.3:5255931-5255950 | None:intergenic | 45.0% | |
| GAGGTTCATCCACACTTGAA+TGG | - | chr6.3:5255585-5255604 | MS.gene20545:intron | 45.0% | |
| GCAGTAGAACCATTCAAGTG+TGG | + | chr6.3:5255597-5255616 | None:intergenic | 45.0% | |
| GGAAAAGCTGCAGGAAGAAA+TGG | - | chr6.3:5256598-5256617 | MS.gene20545:intron | 45.0% | |
| GGTTCTGCTGTTGTTGAAGT+TGG | - | chr6.3:5256343-5256362 | MS.gene20545:intron | 45.0% | |
| GTCGATGAAGTCACTACTAC+TGG | - | chr6.3:5255948-5255967 | MS.gene20545:intron | 45.0% | |
| GTGGGAGACACTTATTCTTC+AGG | - | chr6.3:5256631-5256650 | MS.gene20545:intron | 45.0% | |
| GTGTGGATGAACCTCAACTA+TGG | + | chr6.3:5255580-5255599 | None:intergenic | 45.0% | |
| TCTCAGTGGGAGAGAAATCA+TGG | - | chr6.3:5255102-5255121 | MS.gene20545:intron | 45.0% | |
| TCTGCTGTTGTTGAAGTTGG+TGG | - | chr6.3:5256346-5256365 | MS.gene20545:intron | 45.0% | |
| TGATGGAACTGGAAGTCTCT+TGG | - | chr6.3:5256441-5256460 | MS.gene20545:intron | 45.0% | |
| TTGAAGCAAGGAAAAGCTGC+AGG | - | chr6.3:5256589-5256608 | MS.gene20545:intron | 45.0% | |
| ! | AACCTCAACTATGGTACTGG+AGG | + | chr6.3:5255571-5255590 | None:intergenic | 45.0% |
| ! | TCTAATGGATACTCCTCCCT+TGG | - | chr6.3:5255881-5255900 | MS.gene20545:CDS | 45.0% |
| !! | CTTCGAGTTCTGCTAGCTTT+AGG | + | chr6.3:5256147-5256166 | None:intergenic | 45.0% |
| !!! | TTTTTATTATATTTTTTTGA+AGG | - | chr6.3:5256060-5256079 | MS.gene20545:intron | 5.0% |
| AGATTGCGATGCTTTCGTGC+AGG | - | chr6.3:5255439-5255458 | MS.gene20545:CDS | 50.0% | |
| AGGAGGTCGAGATACTTGAC+CGG | - | chr6.3:5256089-5256108 | MS.gene20545:intron | 50.0% | |
| ATTCAAGGGGGATTCACTGC+TGG | - | chr6.3:5256502-5256521 | MS.gene20545:intron | 50.0% | |
| CTCCTCCAGTACCATAGTTG+AGG | - | chr6.3:5255566-5255585 | MS.gene20545:intron | 50.0% | |
| GCATAATCAGAGCCTGAGCA+AGG | + | chr6.3:5255977-5255996 | None:intergenic | 50.0% | |
| TGGATACTCCTCCCTTGGAA+AGG | - | chr6.3:5255886-5255905 | MS.gene20545:CDS | 50.0% | |
| TGGTTAGGGTCTCTGGACAA+AGG | - | chr6.3:5256378-5256397 | MS.gene20545:intron | 50.0% | |
| TTCAAGGGGGATTCACTGCT+GGG | - | chr6.3:5256503-5256522 | MS.gene20545:intron | 50.0% | |
| ! | TGCTCAGGCTCTGATTATGC+AGG | - | chr6.3:5255977-5255996 | MS.gene20545:intron | 50.0% |
| !! | CTGACTCTAAGACCAACTCC+TGG | - | chr6.3:5256298-5256317 | MS.gene20545:intron | 50.0% |
| !! | TGCTGGGAGTACTACATCAG+AGG | - | chr6.3:5256519-5256538 | MS.gene20545:intron | 50.0% |
| AGGCAAGCTGCGAAGCAGTT+AGG | - | chr6.3:5256539-5256558 | MS.gene20545:intron | 55.0% | |
| CAAATGGCTGCATTCGCCCT+CGG | - | chr6.3:5256406-5256425 | MS.gene20545:CDS | 55.0% | |
| !! | TACTACTGGCTCCCTTGCTC+AGG | - | chr6.3:5255962-5255981 | MS.gene20545:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 5254669 | 5256699 | 5254669 | ID=MS.gene20545 |
| chr6.3 | mRNA | 5254669 | 5256699 | 5254669 | ID=MS.gene20545.t1;Parent=MS.gene20545 |
| chr6.3 | exon | 5256662 | 5256699 | 5256662 | ID=MS.gene20545.t1.exon1;Parent=MS.gene20545.t1 |
| chr6.3 | CDS | 5256662 | 5256699 | 5256662 | ID=cds.MS.gene20545.t1;Parent=MS.gene20545.t1 |
| chr6.3 | exon | 5256404 | 5256434 | 5256404 | ID=MS.gene20545.t1.exon2;Parent=MS.gene20545.t1 |
| chr6.3 | CDS | 5256404 | 5256434 | 5256404 | ID=cds.MS.gene20545.t1;Parent=MS.gene20545.t1 |
| chr6.3 | exon | 5256207 | 5256279 | 5256207 | ID=MS.gene20545.t1.exon3;Parent=MS.gene20545.t1 |
| chr6.3 | CDS | 5256207 | 5256279 | 5256207 | ID=cds.MS.gene20545.t1;Parent=MS.gene20545.t1 |
| chr6.3 | exon | 5255694 | 5255929 | 5255694 | ID=MS.gene20545.t1.exon4;Parent=MS.gene20545.t1 |
| chr6.3 | CDS | 5255694 | 5255929 | 5255694 | ID=cds.MS.gene20545.t1;Parent=MS.gene20545.t1 |
| chr6.3 | exon | 5255370 | 5255525 | 5255370 | ID=MS.gene20545.t1.exon5;Parent=MS.gene20545.t1 |
| chr6.3 | CDS | 5255370 | 5255525 | 5255370 | ID=cds.MS.gene20545.t1;Parent=MS.gene20545.t1 |
| chr6.3 | exon | 5255044 | 5255115 | 5255044 | ID=MS.gene20545.t1.exon6;Parent=MS.gene20545.t1 |
| chr6.3 | CDS | 5255044 | 5255115 | 5255044 | ID=cds.MS.gene20545.t1;Parent=MS.gene20545.t1 |
| chr6.3 | exon | 5254669 | 5254983 | 5254669 | ID=MS.gene20545.t1.exon7;Parent=MS.gene20545.t1 |
| chr6.3 | CDS | 5254669 | 5254983 | 5254669 | ID=cds.MS.gene20545.t1;Parent=MS.gene20545.t1 |
| Gene Sequence |
| Protein sequence |
