AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058294


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058294.t1 MTR_2g033000 99.045 314 3 0 1 314 55 368 0.0 644
MS.gene058294.t1 MTR_4g123080 81.529 314 58 0 1 314 68 381 0.0 546
MS.gene058294.t1 MTR_4g123080 81.529 314 58 0 1 314 50 363 0.0 546
MS.gene058294.t1 MTR_1g086350 64.331 314 111 1 2 314 74 387 6.19e-150 426
MS.gene058294.t1 MTR_1g086350 64.331 314 111 1 2 314 58 371 9.95e-150 425
MS.gene058294.t1 MTR_1g086350 64.074 270 96 1 46 314 16 285 1.56e-125 360
MS.gene058294.t1 MTR_5g024340 50.489 307 137 3 6 311 84 376 4.33e-97 291
MS.gene058294.t1 MTR_4g123080 84.277 159 25 0 156 314 110 268 1.46e-96 286
MS.gene058294.t1 MTR_4g123080 79.545 44 9 0 1 44 68 111 3.40e-16 77.4
MS.gene058294.t1 MTR_4g116420 47.649 319 144 6 2 312 80 383 1.28e-87 268
MS.gene058294.t1 MTR_3g107880 45.714 315 155 6 2 313 19 320 5.86e-87 264
MS.gene058294.t1 MTR_3g107880 45.714 315 155 6 2 313 76 377 3.55e-86 264
MS.gene058294.t1 MTR_3g107880 45.714 315 155 6 2 313 77 378 3.82e-86 263
MS.gene058294.t1 MTR_1g014640 33.333 276 150 8 5 275 75 321 6.41e-40 143
MS.gene058294.t1 MTR_1g013400 33.333 276 150 8 5 275 75 321 6.41e-40 143
MS.gene058294.t1 MTR_5g071550 34.538 249 140 5 35 277 143 374 3.44e-39 142
MS.gene058294.t1 MTR_3g105730 32.394 284 142 9 5 275 10 256 1.00e-38 138
MS.gene058294.t1 MTR_3g105730 32.394 284 142 9 5 275 32 278 1.53e-38 138
MS.gene058294.t1 MTR_3g491830 33.226 310 150 10 3 274 56 346 1.63e-37 137
MS.gene058294.t1 MTR_1g115570 36.325 234 123 7 45 275 125 335 9.62e-37 134
MS.gene058294.t1 MTR_4g094208 33.755 237 129 7 45 275 60 274 1.24e-34 127
MS.gene058294.t1 MTR_3g074610 34.177 237 128 7 45 275 65 279 1.26e-34 127
MS.gene058294.t1 MTR_5g071550 34.025 241 127 6 15 248 131 346 6.20e-34 127
MS.gene058294.t1 MTR_2g008850 32.911 237 131 7 45 275 18 232 7.85e-34 124
MS.gene058294.t1 MTR_4g007440 30.462 325 151 9 6 275 22 326 1.20e-33 127
MS.gene058294.t1 MTR_1g014190 30.000 290 134 6 5 244 59 329 1.67e-33 127
MS.gene058294.t1 MTR_1g050520 33.003 303 146 11 2 282 382 649 1.70e-33 130
MS.gene058294.t1 MTR_2g008850 32.911 237 131 7 45 275 64 278 4.22e-33 123
MS.gene058294.t1 MTR_1g014190 29.655 290 135 5 5 244 21 291 6.21e-33 125
MS.gene058294.t1 MTR_3g105880 29.553 291 134 6 5 244 21 291 1.20e-32 123
MS.gene058294.t1 MTR_3g105880 29.553 291 134 6 5 244 21 291 2.57e-32 123
MS.gene058294.t1 MTR_6g081850 30.640 297 160 9 6 277 43 318 4.43e-32 122
MS.gene058294.t1 MTR_4g094542 35.021 237 125 7 45 275 149 362 7.45e-32 122
MS.gene058294.t1 MTR_5g063940 31.716 268 135 8 20 275 1 232 8.22e-32 119
MS.gene058294.t1 MTR_2g078760 31.799 239 135 7 45 277 37 253 1.60e-31 119
MS.gene058294.t1 MTR_5g063940 31.716 268 135 8 20 275 48 279 2.15e-31 119
MS.gene058294.t1 MTR_3g464700 32.314 229 126 5 15 239 95 298 2.42e-31 120
MS.gene058294.t1 MTR_8g463130 31.646 237 134 7 45 275 65 279 7.26e-31 117
MS.gene058294.t1 MTR_8g463130 31.646 237 134 7 45 275 37 251 7.43e-31 117
MS.gene058294.t1 MTR_2g078760 31.799 239 135 7 45 277 116 332 7.62e-31 119
MS.gene058294.t1 MTR_3g068200 31.461 267 136 7 43 275 120 373 8.19e-30 117
MS.gene058294.t1 MTR_3g091060 35.124 242 117 9 46 275 125 338 1.21e-29 116
MS.gene058294.t1 MTR_3g464650 29.259 270 158 7 15 277 71 314 1.58e-29 115
MS.gene058294.t1 MTR_4g125810 30.435 276 160 8 33 283 241 509 1.78e-29 117
MS.gene058294.t1 MTR_1g028300 32.042 284 160 10 9 277 114 379 1.60e-28 113
MS.gene058294.t1 MTR_1g015110 29.811 265 152 5 41 277 285 543 2.02e-28 115
MS.gene058294.t1 MTR_5g009370 32.018 228 114 8 39 247 80 285 5.29e-26 105
MS.gene058294.t1 MTR_3g104710 29.368 269 142 7 46 279 286 541 9.76e-26 107
MS.gene058294.t1 MTR_2g040500 28.881 277 148 8 46 279 267 537 5.45e-25 105
MS.gene058294.t1 MTR_5g080680 31.797 217 116 7 46 245 132 333 2.27e-24 102
MS.gene058294.t1 MTR_2g078760 31.250 192 108 6 45 230 116 289 7.07e-22 93.6
MS.gene058294.t1 MTR_8g102550 26.236 263 167 5 42 288 148 399 1.16e-21 94.7
MS.gene058294.t1 MTR_7g100240 29.643 280 150 9 45 279 70 347 1.20e-20 91.7
MS.gene058294.t1 MTR_1g116260 29.553 291 130 10 46 277 80 354 4.87e-20 89.7
MS.gene058294.t1 MTR_3g105730 33.146 178 82 6 5 172 32 182 1.11e-19 86.3
MS.gene058294.t1 MTR_4g118340 26.429 280 143 8 46 282 86 345 1.62e-19 88.6
MS.gene058294.t1 MTR_1g106855 29.167 288 150 9 40 277 54 337 1.67e-19 88.2
MS.gene058294.t1 MTR_5g071550 34.177 158 85 3 15 172 131 269 7.30e-19 85.1
MS.gene058294.t1 MTR_8g074930 26.667 285 146 8 46 277 79 353 1.59e-18 85.5
MS.gene058294.t1 MTR_7g070510 28.669 293 147 11 15 263 69 343 3.53e-18 85.1
MS.gene058294.t1 MTR_2g020970 27.106 273 136 8 46 275 87 339 5.52e-18 84.0
MS.gene058294.t1 MTR_2g020970 27.106 273 136 8 46 275 87 339 8.23e-18 84.0
MS.gene058294.t1 MTR_1g112840 26.224 286 146 9 46 277 81 355 1.19e-17 83.2
MS.gene058294.t1 MTR_2g435550 28.014 282 150 10 48 291 94 360 3.91e-17 81.3
MS.gene058294.t1 MTR_2g435550 28.014 282 150 10 48 291 80 346 4.45e-17 80.9
MS.gene058294.t1 MTR_7g080170 34.483 174 90 6 86 240 68 236 4.50e-17 81.3
MS.gene058294.t1 MTR_1g106855 30.000 240 130 7 40 245 54 289 5.11e-17 80.1
MS.gene058294.t1 MTR_1g067210 27.586 290 139 10 46 278 76 351 6.83e-17 80.9
MS.gene058294.t1 MTR_7g080170 34.483 174 90 6 86 240 176 344 7.63e-17 81.3
MS.gene058294.t1 MTR_7g021530 31.760 233 125 9 51 262 76 295 2.17e-16 79.3
MS.gene058294.t1 MTR_4g120410 28.854 253 133 9 46 263 91 331 2.29e-16 79.0
MS.gene058294.t1 MTR_2g033910 26.502 283 152 9 46 278 75 351 2.97e-16 79.0
MS.gene058294.t1 MTR_2g435550 29.762 252 124 10 48 261 94 330 2.99e-16 79.0
MS.gene058294.t1 MTR_7g021530 31.760 233 125 9 51 262 126 345 5.47e-16 78.2
MS.gene058294.t1 MTR_1g016620 27.074 229 127 8 45 240 67 288 9.52e-16 77.0
MS.gene058294.t1 MTR_7g021530 31.760 233 125 9 51 262 167 386 9.83e-16 77.8
MS.gene058294.t1 MTR_7g081020 25.000 288 147 10 46 277 76 350 1.93e-15 76.6
MS.gene058294.t1 MTR_8g017240 29.839 248 125 11 46 261 86 316 1.94e-15 76.6
MS.gene058294.t1 MTR_4g013295 28.352 261 140 11 46 269 78 328 2.21e-15 76.3
MS.gene058294.t1 MTR_7g090530 29.114 237 121 10 46 245 69 295 9.02e-15 74.7
MS.gene058294.t1 MTR_0015s0140 26.953 256 134 10 44 262 77 316 9.54e-15 74.7
MS.gene058294.t1 MTR_7g090550 27.897 233 129 7 46 245 70 296 1.18e-14 74.3
MS.gene058294.t1 MTR_5g080680 30.435 161 86 5 46 189 132 283 2.03e-14 72.8
MS.gene058294.t1 MTR_1g075730 23.830 235 144 8 42 275 75 275 2.14e-14 72.4
MS.gene058294.t1 MTR_3g032700 26.754 228 138 6 46 245 68 294 2.49e-14 73.6
MS.gene058294.t1 MTR_5g005810 28.295 258 151 11 39 275 325 569 6.42e-14 72.4
MS.gene058294.t1 MTR_1g075730 22.176 239 139 6 42 275 75 271 6.75e-14 70.9
MS.gene058294.t1 MTR_7g112490 27.132 258 138 9 46 262 109 357 7.53e-14 72.0
MS.gene058294.t1 MTR_3g032660 26.087 230 141 6 44 245 66 294 8.61e-14 72.0
MS.gene058294.t1 MTR_7g112490 27.413 259 136 9 46 262 91 339 8.76e-14 71.6
MS.gene058294.t1 MTR_4g076560 26.923 260 156 7 34 262 190 446 8.84e-14 72.0
MS.gene058294.t1 MTR_8g074930 26.531 245 119 7 86 277 5 241 1.71e-13 70.1
MS.gene058294.t1 MTR_7g081020 24.786 234 135 7 46 245 76 302 2.32e-13 70.1
MS.gene058294.t1 MTR_7g112430 28.800 250 144 9 42 275 64 295 1.06e-12 68.6
MS.gene058294.t1 MTR_1g083690 27.309 249 140 10 46 262 89 328 1.18e-12 68.2
MS.gene058294.t1 MTR_1g083750 29.600 250 142 10 42 275 64 295 1.32e-12 68.2
MS.gene058294.t1 MTR_1g019760 28.226 248 142 10 45 275 64 292 9.62e-12 65.9
MS.gene058294.t1 MTR_1g019760 28.226 248 142 10 45 275 64 292 1.79e-11 64.7
MS.gene058294.t1 MTR_7g029240 30.288 208 121 8 42 234 64 262 2.05e-11 64.7
MS.gene058294.t1 MTR_4g094208 32.824 131 75 4 45 174 60 178 3.00e-11 62.4
MS.gene058294.t1 MTR_4g037470 25.000 332 173 14 1 277 58 368 9.69e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058294.t1 AT1G48040 62.821 312 110 5 2 311 73 380 2.32e-137 394
MS.gene058294.t1 AT3G62260 58.974 312 126 2 2 312 72 382 1.32e-131 379
MS.gene058294.t1 AT3G62260 58.974 312 126 2 2 312 73 383 1.34e-131 379
MS.gene058294.t1 AT3G17250 58.675 317 118 7 2 312 112 421 1.84e-125 365
MS.gene058294.t1 AT3G62260 59.184 294 118 2 20 312 1 293 1.35e-123 356
MS.gene058294.t1 AT2G33700 50.316 316 135 4 2 312 79 377 1.43e-103 308
MS.gene058294.t1 AT3G51470 50.482 311 134 4 2 311 23 314 1.01e-98 293
MS.gene058294.t1 AT3G51470 50.482 311 134 4 2 311 67 358 3.06e-98 294
MS.gene058294.t1 AT2G25620 45.936 283 136 5 2 277 84 356 7.77e-79 245
MS.gene058294.t1 AT2G25620 45.936 283 136 5 2 277 84 356 7.77e-79 245
MS.gene058294.t1 AT2G20630 34.413 247 134 7 45 285 62 286 7.82e-41 144
MS.gene058294.t1 AT4G31750 33.455 275 151 8 5 275 31 277 1.70e-40 144
MS.gene058294.t1 AT4G31750 33.455 275 151 8 5 275 31 277 2.11e-40 143
MS.gene058294.t1 AT4G31750 33.455 275 151 8 5 275 31 277 2.11e-40 143
MS.gene058294.t1 AT2G20630 34.599 237 127 7 45 275 62 276 7.65e-40 141
MS.gene058294.t1 AT5G24940 34.420 276 147 8 5 275 31 277 9.07e-40 145
MS.gene058294.t1 AT1G43900 34.397 282 142 10 3 275 119 366 2.32e-39 142
MS.gene058294.t1 AT5G10740 33.818 275 150 8 5 275 31 277 5.12e-39 141
MS.gene058294.t1 AT5G10740 33.818 275 150 8 5 275 31 277 5.12e-39 141
MS.gene058294.t1 AT4G28400 34.599 237 127 7 45 275 44 258 9.81e-38 135
MS.gene058294.t1 AT4G28400 34.599 237 127 7 45 275 66 280 1.47e-37 135
MS.gene058294.t1 AT1G78200 35.865 237 127 7 45 275 18 235 2.93e-37 133
MS.gene058294.t1 AT1G78200 35.865 237 127 7 45 275 18 235 2.93e-37 133
MS.gene058294.t1 AT1G78200 35.865 237 127 7 45 275 63 280 7.06e-37 133
MS.gene058294.t1 AT1G78200 35.865 237 127 7 45 275 63 280 7.06e-37 133
MS.gene058294.t1 AT1G78200 35.865 237 127 7 45 275 63 280 7.06e-37 133
MS.gene058294.t1 AT1G67820 33.333 246 136 6 15 256 92 313 9.25e-37 136
MS.gene058294.t1 AT1G07160 31.481 270 155 6 15 277 130 376 1.36e-36 135
MS.gene058294.t1 AT1G67820 32.937 252 141 6 9 256 122 349 2.18e-36 135
MS.gene058294.t1 AT5G53140 34.711 242 118 8 46 275 132 345 1.59e-35 133
MS.gene058294.t1 AT5G53140 34.711 242 118 8 46 275 132 345 1.59e-35 133
MS.gene058294.t1 AT2G40180 33.457 269 154 8 15 277 136 385 1.72e-34 129
MS.gene058294.t1 AT2G25070 28.440 327 158 7 5 275 21 327 1.81e-34 129
MS.gene058294.t1 AT2G25070 28.440 327 158 7 5 275 21 327 1.81e-34 129
MS.gene058294.t1 AT1G22280 33.750 240 131 8 45 275 64 284 1.09e-33 125
MS.gene058294.t1 AT2G30020 33.054 239 139 6 45 277 169 392 9.04e-33 125
MS.gene058294.t1 AT1G22280 34.156 243 120 9 45 275 64 278 1.65e-32 122
MS.gene058294.t1 AT1G18030 32.404 287 160 9 13 280 80 351 1.53e-31 121
MS.gene058294.t1 AT4G31860 28.616 318 169 6 5 275 21 327 2.14e-31 120
MS.gene058294.t1 AT1G34750 33.054 239 132 7 45 277 65 281 1.09e-30 117
MS.gene058294.t1 AT1G34750 33.054 239 132 7 45 277 65 281 1.09e-30 117
MS.gene058294.t1 AT1G34750 33.054 239 132 7 45 277 65 281 1.09e-30 117
MS.gene058294.t1 AT1G07430 33.591 259 135 8 7 246 120 360 1.31e-30 120
MS.gene058294.t1 AT3G15260 31.646 237 134 7 45 275 72 286 1.92e-30 117
MS.gene058294.t1 AT3G15260 31.646 237 134 7 45 275 72 286 1.92e-30 117
MS.gene058294.t1 AT4G31860 29.329 283 147 5 5 245 21 292 1.96e-30 117
MS.gene058294.t1 AT2G40860 32.095 296 157 9 2 282 387 653 2.72e-30 120
MS.gene058294.t1 AT2G40860 30.508 295 163 8 2 282 289 555 2.97e-30 120
MS.gene058294.t1 AT5G51760 30.325 277 141 8 43 275 111 379 6.09e-29 114
MS.gene058294.t1 AT5G51760 30.325 277 141 8 43 275 141 409 8.33e-29 114
MS.gene058294.t1 AT4G28400 35.938 192 99 6 45 230 66 239 1.11e-28 111
MS.gene058294.t1 AT4G26080 30.418 263 140 10 46 277 172 422 4.50e-27 110
MS.gene058294.t1 AT3G11410 29.771 262 147 8 4 245 103 347 6.02e-27 109
MS.gene058294.t1 AT4G31860 29.699 266 134 5 5 228 21 275 1.77e-26 105
MS.gene058294.t1 AT2G29380 32.374 278 147 10 28 275 92 358 3.20e-26 107
MS.gene058294.t1 AT2G40860 31.636 275 144 9 2 261 387 632 3.29e-26 108
MS.gene058294.t1 AT5G57050 27.757 263 154 6 46 280 120 374 1.95e-25 105
MS.gene058294.t1 AT5G57050 27.757 263 154 6 46 280 160 414 2.32e-25 105
MS.gene058294.t1 AT4G27800 30.389 283 154 9 45 292 87 361 5.29e-25 103
MS.gene058294.t1 AT2G34740 27.500 240 144 8 45 277 118 334 1.97e-24 101
MS.gene058294.t1 AT1G17550 28.671 286 148 9 38 279 230 503 4.84e-24 102
MS.gene058294.t1 AT1G17550 28.671 286 148 9 38 279 230 503 4.84e-24 102
MS.gene058294.t1 AT1G18030 31.276 243 134 8 6 230 73 300 1.27e-23 99.0
MS.gene058294.t1 AT3G16800 39.153 189 86 9 96 264 54 233 1.70e-23 97.4
MS.gene058294.t1 AT3G16800 39.153 189 86 9 96 264 54 233 1.70e-23 97.4
MS.gene058294.t1 AT5G59220 31.222 221 128 5 46 254 148 356 5.35e-23 98.6
MS.gene058294.t1 AT3G16800 31.802 283 144 13 11 264 66 328 5.63e-23 97.8
MS.gene058294.t1 AT3G16800 31.802 283 144 13 11 264 66 328 5.63e-23 97.8
MS.gene058294.t1 AT3G16800 31.802 283 144 13 11 264 66 328 5.63e-23 97.8
MS.gene058294.t1 AT1G72770 29.749 279 138 10 46 279 238 503 6.24e-23 99.4
MS.gene058294.t1 AT1G72770 29.749 279 138 10 46 279 238 503 6.24e-23 99.4
MS.gene058294.t1 AT1G72770 29.749 279 138 10 46 279 238 503 6.24e-23 99.4
MS.gene058294.t1 AT3G06270 28.205 273 133 8 46 275 88 340 3.28e-22 95.5
MS.gene058294.t1 AT4G27800 31.225 253 133 8 45 262 87 333 9.30e-22 94.4
MS.gene058294.t1 AT4G27800 31.148 244 127 8 45 253 87 324 1.04e-20 91.3
MS.gene058294.t1 AT3G55050 29.795 292 136 12 44 279 82 360 2.88e-20 90.5
MS.gene058294.t1 AT3G55050 29.795 292 136 12 44 279 82 360 2.88e-20 90.5
MS.gene058294.t1 AT2G34740 28.426 197 115 8 45 234 132 309 1.24e-19 88.2
MS.gene058294.t1 AT2G34740 28.426 197 115 8 45 234 114 291 1.30e-19 87.8
MS.gene058294.t1 AT3G51370 25.430 291 166 9 46 289 79 365 1.65e-19 88.6
MS.gene058294.t1 AT3G51370 25.430 291 166 9 46 289 79 365 1.65e-19 88.6
MS.gene058294.t1 AT5G02760 28.470 281 146 12 46 278 72 345 3.02e-19 87.4
MS.gene058294.t1 AT1G34750 31.771 192 107 6 45 230 65 238 3.40e-19 85.5
MS.gene058294.t1 AT5G66080 27.562 283 146 12 46 277 82 356 9.72e-19 86.3
MS.gene058294.t1 AT3G02750 34.615 182 95 6 78 240 177 353 1.43e-18 86.3
MS.gene058294.t1 AT3G02750 34.615 182 95 6 78 240 177 353 1.43e-18 86.3
MS.gene058294.t1 AT4G38520 27.046 281 146 7 46 275 81 353 3.95e-18 84.7
MS.gene058294.t1 AT4G38520 27.046 281 146 7 46 275 81 353 3.95e-18 84.7
MS.gene058294.t1 AT5G06750 26.056 284 156 7 44 277 80 359 6.46e-18 84.0
MS.gene058294.t1 AT5G06750 26.056 284 156 7 44 277 80 359 6.46e-18 84.0
MS.gene058294.t1 AT2G40860 32.340 235 118 8 2 221 387 595 1.21e-17 84.0
MS.gene058294.t1 AT1G68410 31.481 270 149 11 38 288 61 313 1.43e-17 83.2
MS.gene058294.t1 AT1G68410 31.481 270 149 11 38 288 61 313 1.43e-17 83.2
MS.gene058294.t1 AT1G68410 31.481 270 149 11 38 288 61 313 1.43e-17 83.2
MS.gene058294.t1 AT1G68410 31.481 270 149 11 38 288 61 313 1.43e-17 83.2
MS.gene058294.t1 AT3G12620 28.956 297 128 12 44 277 81 357 2.43e-17 82.0
MS.gene058294.t1 AT3G12620 28.956 297 128 12 44 277 81 357 2.43e-17 82.0
MS.gene058294.t1 AT5G36250 32.020 203 110 8 80 263 170 363 5.63e-17 81.6
MS.gene058294.t1 AT3G17090 26.389 288 145 9 46 278 84 359 6.75e-17 80.9
MS.gene058294.t1 AT4G33920 27.622 286 153 8 42 277 57 338 9.37e-17 80.5
MS.gene058294.t1 AT1G47380 28.676 272 158 9 42 296 60 312 1.51e-16 80.1
MS.gene058294.t1 AT5G27930 28.413 271 143 10 46 275 92 352 1.87e-16 79.3
MS.gene058294.t1 AT5G27930 28.413 271 143 10 46 275 92 352 1.87e-16 79.3
MS.gene058294.t1 AT3G05640 29.268 246 136 9 46 263 93 328 7.04e-16 77.8
MS.gene058294.t1 AT3G05640 29.268 246 136 9 46 263 93 328 7.04e-16 77.8
MS.gene058294.t1 AT3G05640 29.268 246 136 9 46 263 93 328 7.04e-16 77.8
MS.gene058294.t1 AT1G79630 32.432 185 93 6 116 277 112 287 2.55e-15 76.3
MS.gene058294.t1 AT1G79630 32.432 185 93 6 116 277 112 287 2.55e-15 76.3
MS.gene058294.t1 AT1G79630 32.432 185 93 6 116 277 112 287 2.55e-15 76.3
MS.gene058294.t1 AT1G79630 32.432 185 93 6 116 277 112 287 2.55e-15 76.3
MS.gene058294.t1 AT1G79630 32.432 185 93 6 116 277 152 327 2.72e-15 76.3
MS.gene058294.t1 AT1G79630 32.432 185 93 6 116 277 152 327 2.72e-15 76.3
MS.gene058294.t1 AT1G79630 32.432 185 93 6 116 277 218 393 2.85e-15 76.6
MS.gene058294.t1 AT1G79630 32.432 185 93 6 116 277 222 397 3.97e-15 76.3
MS.gene058294.t1 AT3G16560 29.880 251 118 8 46 240 175 423 8.47e-15 75.1
MS.gene058294.t1 AT3G16560 29.880 251 118 8 46 240 175 423 8.47e-15 75.1
MS.gene058294.t1 AT3G16560 29.880 251 118 8 46 240 175 423 8.47e-15 75.1
MS.gene058294.t1 AT3G16560 29.880 251 118 8 46 240 175 423 9.49e-15 74.7
MS.gene058294.t1 AT1G16220 31.892 185 94 6 116 277 199 374 1.29e-14 74.7
MS.gene058294.t1 AT3G51370 25.498 251 138 8 86 289 32 280 1.91e-14 72.8
MS.gene058294.t1 AT4G08260 28.085 235 123 7 45 277 18 208 2.97e-14 70.9
MS.gene058294.t1 AT5G06750 28.837 215 101 6 113 277 65 277 4.84e-14 72.0
MS.gene058294.t1 AT5G57050 28.477 151 100 4 46 190 160 308 5.17e-14 72.0
MS.gene058294.t1 AT5G01700 28.782 271 145 8 46 278 29 289 1.22e-13 70.9
MS.gene058294.t1 AT5G01700 28.782 271 145 8 46 278 78 338 2.16e-13 70.5
MS.gene058294.t1 AT4G32950 26.056 284 142 11 33 278 62 315 2.38e-13 70.1
MS.gene058294.t1 AT4G33920 30.233 215 98 7 113 277 43 255 8.18e-13 68.2
MS.gene058294.t1 AT4G33920 30.233 215 98 7 113 277 13 225 8.74e-13 67.8
MS.gene058294.t1 AT5G66080 26.446 242 123 10 86 277 16 252 1.43e-12 67.4
MS.gene058294.t1 AT5G26010 25.475 263 158 8 48 281 75 328 8.78e-12 65.5
MS.gene058294.t1 AT5G59220 28.387 155 93 3 46 188 148 296 1.75e-11 64.3

Find 71 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAATGCCTTCCAAGTATA+AGG 0.238471 2.2:+55806544 None:intergenic
CACTCGTGCCCTTGGCGATT+GGG 0.294126 2.2:-55806361 MS.gene058294:CDS
TCTGCTCATCGGCCAATAAA+AGG 0.328870 2.2:+55806604 None:intergenic
TACCGCTGAGCCCGATGTTC+AGG 0.329190 2.2:-55806304 MS.gene058294:CDS
TCATCGGGTGTGATGGCATC+TGG 0.334669 2.2:-55806248 MS.gene058294:CDS
TCACTCGTGCCCTTGGCGAT+TGG 0.336784 2.2:-55806362 MS.gene058294:CDS
AGCTACCAGAACGAACCTTT+GGG 0.376250 2.2:+55806901 None:intergenic
TGCTTCTTTGACAAGTTCTC+TGG 0.384437 2.2:+55806149 None:intergenic
CTTTCTGTCACTCGTGCCCT+TGG 0.404116 2.2:-55806369 MS.gene058294:CDS
TATACTTGGAAGGCATTTGT+TGG 0.407505 2.2:-55806541 MS.gene058294:CDS
CAGCTACCAGAACGAACCTT+TGG 0.414252 2.2:+55806900 None:intergenic
CTGGTAAATAACTTGGTCTA+TGG 0.421882 2.2:+55806451 None:intergenic
GCACTCACTGCCCTTATACT+TGG 0.428337 2.2:-55806555 MS.gene058294:CDS
AAGCTCTAAATCTTCGCCTA+TGG 0.430070 2.2:+55806043 None:intergenic
TCTGGTAGCTGTGCTGATAT+TGG 0.447446 2.2:-55806888 MS.gene058294:CDS
AGCTCTAAATCTTCGCCTAT+GGG 0.459608 2.2:+55806044 None:intergenic
AGTTCTCTGGCACTTTGCTG+TGG 0.460519 2.2:+55806162 None:intergenic
TTTACCCCAAAGGTTCGTTC+TGG 0.464465 2.2:-55806906 MS.gene058294:CDS
CATTTGTTGGTTGCTAATGC+TGG 0.472590 2.2:-55806528 MS.gene058294:CDS
TTGCGTTCTGGTAAATAACT+TGG 0.474115 2.2:+55806444 None:intergenic
ATTGATGATGGATATCTCAA+TGG 0.476570 2.2:-55806396 MS.gene058294:CDS
AAGACGAGTTCTTGATCATC+GGG 0.485898 2.2:-55806263 MS.gene058294:CDS
CAAATGCCTTCCAAGTATAA+GGG 0.487105 2.2:+55806545 None:intergenic
CTGATACACTTCTGCTGAAG+AGG 0.490905 2.2:-55806665 MS.gene058294:CDS
AATGTGACCACCTGAACATC+GGG 0.492122 2.2:+55806294 None:intergenic
TTAACGAACACAGCTGCATC+AGG 0.497073 2.2:+55806744 None:intergenic
CGCAAAAGAGTTGAAGAGTT+GGG 0.502276 2.2:-55806426 MS.gene058294:CDS
ACATCGGGCTCAGCGGTAAG+AGG 0.502689 2.2:+55806309 None:intergenic
TTGGGTGGTTATATTGATGA+TGG 0.506401 2.2:-55806408 MS.gene058294:CDS
TATTGGTCCGAGGGGATCAA+TGG 0.507289 2.2:-55806871 MS.gene058294:CDS
TTCTTGATCATCGGGTGTGA+TGG 0.511769 2.2:-55806255 MS.gene058294:CDS
GTTCTCTGGCACTTTGCTGT+GGG 0.513851 2.2:+55806163 None:intergenic
GACGATCTAGCTGCCCACCT+TGG 0.519625 2.2:-55806828 MS.gene058294:CDS
TACACTTCTGCTGAAGAGGT+TGG 0.525937 2.2:-55806661 MS.gene058294:CDS
CTGTGCTGATATTGGTCCGA+GGG 0.531833 2.2:-55806880 MS.gene058294:CDS
CTGGGATGTAATGTCAAGCC+AGG 0.541505 2.2:-55806229 MS.gene058294:CDS
TTGAATCATGTCCACCCCAT+AGG 0.554769 2.2:-55806059 MS.gene058294:CDS
CATCGGGTGTGATGGCATCT+GGG 0.557858 2.2:-55806247 MS.gene058294:CDS
CGAGCAGTTCTTTGTAAGCG+TGG 0.558354 2.2:-55806498 MS.gene058294:CDS
GAAGACGAGTTCTTGATCAT+CGG 0.564298 2.2:-55806264 MS.gene058294:CDS
TGTTGCGATGTTTACCCCAA+AGG 0.564420 2.2:-55806916 None:intergenic
CGCTGAGCCCGATGTTCAGG+TGG 0.565779 2.2:-55806301 MS.gene058294:CDS
ACGCAAAAGAGTTGAAGAGT+TGG 0.572797 2.2:-55806427 MS.gene058294:CDS
TAAGATTATCTGTTGTGTGT+AGG 0.581268 2.2:+55806121 None:intergenic
TCACTGCCCTTATACTTGGA+AGG 0.583969 2.2:-55806551 MS.gene058294:CDS
AGCTTGCTCTATGTCTGAAG+AGG 0.585818 2.2:-55806025 MS.gene058294:CDS
TCATCATCCATTGATCCCCT+CGG 0.588284 2.2:+55806864 None:intergenic
GGACAAGACTAACTGCATCC+TGG 0.595749 2.2:+55806211 None:intergenic
CTAAATCTTCGCCTATGGGG+TGG 0.596370 2.2:+55806048 None:intergenic
CAATGTGACCACCTGAACAT+CGG 0.599254 2.2:+55806293 None:intergenic
CAGAGTATTAGCAGTTCATG+TGG 0.601084 2.2:-55806585 MS.gene058294:CDS
TTGTCCGTCGCGGTTTACGA+AGG 0.607724 2.2:-55806194 MS.gene058294:CDS
GGTATTTCAACACAAATCCA+AGG 0.613841 2.2:+55806811 None:intergenic
TGGGACTTAAAATTACCACT+TGG 0.614350 2.2:-55806342 MS.gene058294:CDS
AAGAGGCTAGAAACAAATTG+AGG 0.621192 2.2:-55806008 MS.gene058294:CDS
AGAGGTTGGAAGATTCTCAT+CGG 0.630866 2.2:-55806647 MS.gene058294:CDS
GCTGTGCTGATATTGGTCCG+AGG 0.631517 2.2:-55806881 MS.gene058294:CDS
ACTGCTAATACTCTGCTCAT+CGG 0.645620 2.2:+55806593 None:intergenic
CACCTGAACATCGGGCTCAG+CGG 0.649950 2.2:+55806302 None:intergenic
GGGCTCAGCGGTAAGAGGTG+AGG 0.652622 2.2:+55806314 None:intergenic
AGAGTATTAGCAGTTCATGT+GGG 0.653257 2.2:-55806584 MS.gene058294:CDS
TTTCAACACAAATCCAAGGT+GGG 0.656005 2.2:+55806815 None:intergenic
AAAAGAGTTGAAGAGTTGGG+TGG 0.676698 2.2:-55806423 MS.gene058294:CDS
CGTGCCTTCGTAAACCGCGA+CGG 0.678014 2.2:+55806190 None:intergenic
GCTCTAAATCTTCGCCTATG+GGG 0.678962 2.2:+55806045 None:intergenic
ATTTCAACACAAATCCAAGG+TGG 0.687818 2.2:+55806814 None:intergenic
GCTACCAGAACGAACCTTTG+GGG 0.700429 2.2:+55806902 None:intergenic
TGTGCTGATATTGGTCCGAG+GGG 0.707211 2.2:-55806879 MS.gene058294:CDS
GCAGTTAGTCTTGTCCGTCG+CGG 0.710511 2.2:-55806204 MS.gene058294:CDS
TCAGGTGGTCACATTGACTG+AGG 0.718483 2.2:-55806286 MS.gene058294:CDS
AGAGGTGAGGCAGAACCAAG+TGG 0.724484 2.2:+55806327 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTATGCTGTTTTTGAT+GGG - chr2.2:55806120-55806139 MS.gene058294:CDS 25.0%
TAAGATTATCTGTTGTGTGT+AGG + chr2.2:55806778-55806797 None:intergenic 30.0%
!! AAAACAGCATAAAAAGCACT+CGG + chr2.2:55806116-55806135 None:intergenic 30.0%
!! ATTGATGATGGATATCTCAA+TGG - chr2.2:55806500-55806519 MS.gene058294:CDS 30.0%
!! TTTTGATGATACTACTATGC+TGG - chr2.2:55806196-55806215 MS.gene058294:CDS 30.0%
!!! GCTTTTTATGCTGTTTTTGA+TGG - chr2.2:55806119-55806138 MS.gene058294:CDS 30.0%
AAGAGGCTAGAAACAAATTG+AGG - chr2.2:55806888-55806907 MS.gene058294:CDS 35.0%
ACAAATGCCTTCCAAGTATA+AGG + chr2.2:55806355-55806374 None:intergenic 35.0%
ATTTCAACACAAATCCAAGG+TGG + chr2.2:55806085-55806104 None:intergenic 35.0%
CAAATGCCTTCCAAGTATAA+GGG + chr2.2:55806354-55806373 None:intergenic 35.0%
CTGGTAAATAACTTGGTCTA+TGG + chr2.2:55806448-55806467 None:intergenic 35.0%
GGTATTTCAACACAAATCCA+AGG + chr2.2:55806088-55806107 None:intergenic 35.0%
TGGGACTTAAAATTACCACT+TGG - chr2.2:55806554-55806573 MS.gene058294:CDS 35.0%
TTGCGTTCTGGTAAATAACT+TGG + chr2.2:55806455-55806474 None:intergenic 35.0%
TTGGGTGGTTATATTGATGA+TGG - chr2.2:55806488-55806507 MS.gene058294:CDS 35.0%
TTTCAACACAAATCCAAGGT+GGG + chr2.2:55806084-55806103 None:intergenic 35.0%
! AGAGTATTAGCAGTTCATGT+GGG - chr2.2:55806312-55806331 MS.gene058294:CDS 35.0%
!! TATACTTGGAAGGCATTTGT+TGG - chr2.2:55806355-55806374 MS.gene058294:CDS 35.0%
!!! TCTCATCGGAAAGCTTTTTT+AGG - chr2.2:55806263-55806282 MS.gene058294:CDS 35.0%
!!! TTTAGGTGCTGACCTTTTAT+TGG - chr2.2:55806280-55806299 MS.gene058294:CDS 35.0%
AAAAGAGTTGAAGAGTTGGG+TGG - chr2.2:55806473-55806492 MS.gene058294:CDS 40.0%
AAGACGAGTTCTTGATCATC+GGG - chr2.2:55806633-55806652 MS.gene058294:CDS 40.0%
ACGCAAAAGAGTTGAAGAGT+TGG - chr2.2:55806469-55806488 MS.gene058294:CDS 40.0%
ACTGCTAATACTCTGCTCAT+CGG + chr2.2:55806306-55806325 None:intergenic 40.0%
AGAGGTTGGAAGATTCTCAT+CGG - chr2.2:55806249-55806268 MS.gene058294:CDS 40.0%
CGCAAAAGAGTTGAAGAGTT+GGG - chr2.2:55806470-55806489 MS.gene058294:CDS 40.0%
GAAGACGAGTTCTTGATCAT+CGG - chr2.2:55806632-55806651 MS.gene058294:CDS 40.0%
TGCTTCTTTGACAAGTTCTC+TGG + chr2.2:55806750-55806769 None:intergenic 40.0%
! CAGAGTATTAGCAGTTCATG+TGG - chr2.2:55806311-55806330 MS.gene058294:CDS 40.0%
! CATTTGTTGGTTGCTAATGC+TGG - chr2.2:55806368-55806387 MS.gene058294:CDS 40.0%
! TCTTCAACTCTTTTGCGTTC+TGG + chr2.2:55806467-55806486 None:intergenic 40.0%
!! AAGCTCTAAATCTTCGCCTA+TGG + chr2.2:55806856-55806875 None:intergenic 40.0%
!! AGCTCTAAATCTTCGCCTAT+GGG + chr2.2:55806855-55806874 None:intergenic 40.0%
!! ATTTTAAGTCCCAATCGCCA+AGG + chr2.2:55806547-55806566 None:intergenic 40.0%
!! CATAAAAAGCACTCGGTGTA+GGG + chr2.2:55806109-55806128 None:intergenic 40.0%
!! TTTTAAGTCCCAATCGCCAA+GGG + chr2.2:55806546-55806565 None:intergenic 40.0%
!!! TATGCTGTTTTTGATGGGCA+TGG - chr2.2:55806125-55806144 MS.gene058294:CDS 40.0%
AATGTGACCACCTGAACATC+GGG + chr2.2:55806605-55806624 None:intergenic 45.0%
AGCTACCAGAACGAACCTTT+GGG + chr2.2:55805998-55806017 None:intergenic 45.0%
CAATGTGACCACCTGAACAT+CGG + chr2.2:55806606-55806625 None:intergenic 45.0%
CTGATACACTTCTGCTGAAG+AGG - chr2.2:55806231-55806250 MS.gene058294:CDS 45.0%
TACACTTCTGCTGAAGAGGT+TGG - chr2.2:55806235-55806254 MS.gene058294:CDS 45.0%
TCACTGCCCTTATACTTGGA+AGG - chr2.2:55806345-55806364 MS.gene058294:CDS 45.0%
TCATCATCCATTGATCCCCT+CGG + chr2.2:55806035-55806054 None:intergenic 45.0%
TCTGCTCATCGGCCAATAAA+AGG + chr2.2:55806295-55806314 None:intergenic 45.0%
TTAACGAACACAGCTGCATC+AGG + chr2.2:55806155-55806174 None:intergenic 45.0%
TTCTTGATCATCGGGTGTGA+TGG - chr2.2:55806641-55806660 MS.gene058294:CDS 45.0%
TTGAATCATGTCCACCCCAT+AGG - chr2.2:55806837-55806856 MS.gene058294:CDS 45.0%
TTTACCCCAAAGGTTCGTTC+TGG - chr2.2:55805990-55806009 MS.gene058294:CDS 45.0%
! AGCTTGCTCTATGTCTGAAG+AGG - chr2.2:55806871-55806890 MS.gene058294:CDS 45.0%
! GCTCTAAATCTTCGCCTATG+GGG + chr2.2:55806854-55806873 None:intergenic 45.0%
! TCTGGTAGCTGTGCTGATAT+TGG - chr2.2:55806008-55806027 MS.gene058294:CDS 45.0%
!! GCATAAAAAGCACTCGGTGT+AGG + chr2.2:55806110-55806129 None:intergenic 45.0%
AGTTCTCTGGCACTTTGCTG+TGG + chr2.2:55806737-55806756 None:intergenic 50.0%
CAGCTACCAGAACGAACCTT+TGG + chr2.2:55805999-55806018 None:intergenic 50.0%
CGAGCAGTTCTTTGTAAGCG+TGG - chr2.2:55806398-55806417 MS.gene058294:CDS 50.0%
CTAAATCTTCGCCTATGGGG+TGG + chr2.2:55806851-55806870 None:intergenic 50.0%
CTGGGATGTAATGTCAAGCC+AGG - chr2.2:55806667-55806686 MS.gene058294:CDS 50.0%
GCACTCACTGCCCTTATACT+TGG - chr2.2:55806341-55806360 MS.gene058294:CDS 50.0%
GCTACCAGAACGAACCTTTG+GGG + chr2.2:55805997-55806016 None:intergenic 50.0%
GGACAAGACTAACTGCATCC+TGG + chr2.2:55806688-55806707 None:intergenic 50.0%
TATTGGTCCGAGGGGATCAA+TGG - chr2.2:55806025-55806044 MS.gene058294:CDS 50.0%
! CTGTGCTGATATTGGTCCGA+GGG - chr2.2:55806016-55806035 MS.gene058294:CDS 50.0%
! GTTCTCTGGCACTTTGCTGT+GGG + chr2.2:55806736-55806755 None:intergenic 50.0%
! TCAGGTGGTCACATTGACTG+AGG - chr2.2:55806610-55806629 MS.gene058294:CDS 50.0%
! TGTGCTGATATTGGTCCGAG+GGG - chr2.2:55806017-55806036 MS.gene058294:CDS 50.0%
!!! GCTGTTTTTGATGGGCATGG+AGG - chr2.2:55806128-55806147 MS.gene058294:CDS 50.0%
AGAGGTGAGGCAGAACCAAG+TGG + chr2.2:55806572-55806591 None:intergenic 55.0%
CATCGGGTGTGATGGCATCT+GGG - chr2.2:55806649-55806668 MS.gene058294:CDS 55.0%
CTTTCTGTCACTCGTGCCCT+TGG - chr2.2:55806527-55806546 MS.gene058294:CDS 55.0%
TCATCGGGTGTGATGGCATC+TGG - chr2.2:55806648-55806667 MS.gene058294:CDS 55.0%
TTGTCCGTCGCGGTTTACGA+AGG - chr2.2:55806702-55806721 MS.gene058294:CDS 55.0%
! GCTGTGCTGATATTGGTCCG+AGG - chr2.2:55806015-55806034 MS.gene058294:CDS 55.0%
!! GCAGTTAGTCTTGTCCGTCG+CGG - chr2.2:55806692-55806711 MS.gene058294:CDS 55.0%
ACATCGGGCTCAGCGGTAAG+AGG + chr2.2:55806590-55806609 None:intergenic 60.0%
CACCTGAACATCGGGCTCAG+CGG + chr2.2:55806597-55806616 None:intergenic 60.0%
CACTCGTGCCCTTGGCGATT+GGG - chr2.2:55806535-55806554 MS.gene058294:CDS 60.0%
CGTGCCTTCGTAAACCGCGA+CGG + chr2.2:55806709-55806728 None:intergenic 60.0%
GACGATCTAGCTGCCCACCT+TGG - chr2.2:55806068-55806087 MS.gene058294:CDS 60.0%
TACCGCTGAGCCCGATGTTC+AGG - chr2.2:55806592-55806611 MS.gene058294:CDS 60.0%
TCACTCGTGCCCTTGGCGAT+TGG - chr2.2:55806534-55806553 MS.gene058294:CDS 60.0%
CGCTGAGCCCGATGTTCAGG+TGG - chr2.2:55806595-55806614 MS.gene058294:CDS 65.0%
GGGCTCAGCGGTAAGAGGTG+AGG + chr2.2:55806585-55806604 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 55805987 55806931 55805987 ID=MS.gene058294
chr2.2 mRNA 55805987 55806931 55805987 ID=MS.gene058294.t1;Parent=MS.gene058294
chr2.2 exon 55805987 55806931 55805987 ID=MS.gene058294.t1.exon1;Parent=MS.gene058294.t1
chr2.2 CDS 55805987 55806931 55805987 ID=cds.MS.gene058294.t1;Parent=MS.gene058294.t1
Gene Sequence

>MS.gene058294

ATGTTTACCCCAAAGGTTCGTTCTGGTAGCTGTGCTGATATTGGTCCGAGGGGATCAATGGATGATGAACACATTCAAATAGACGATCTAGCTGCCCACCTTGGATTTGTGTTGAAATACCCTACACCGAGTGCTTTTTATGCTGTTTTTGATGGGCATGGAGGTCCTGATGCAGCTGTGTTCGTTAAGAACAATGCTATGAAATTATTTTTTGATGATACTACTATGCTGGAAACTTATGACTCTGATACACTTCTGCTGAAGAGGTTGGAAGATTCTCATCGGAAAGCTTTTTTAGGTGCTGACCTTTTATTGGCCGATGAGCAGAGTATTAGCAGTTCATGTGGGACAACAGCACTCACTGCCCTTATACTTGGAAGGCATTTGTTGGTTGCTAATGCTGGTGATTGTCGAGCAGTTCTTTGTAAGCGTGGAGTAGCTGTTGACATGTCTCAAGACCATAGACCAAGTTATTTACCAGAACGCAAAAGAGTTGAAGAGTTGGGTGGTTATATTGATGATGGATATCTCAATGGTTATCTTTCTGTCACTCGTGCCCTTGGCGATTGGGACTTAAAATTACCACTTGGTTCTGCCTCACCTCTTACCGCTGAGCCCGATGTTCAGGTGGTCACATTGACTGAGGAAGACGAGTTCTTGATCATCGGGTGTGATGGCATCTGGGATGTAATGTCAAGCCAGGATGCAGTTAGTCTTGTCCGTCGCGGTTTACGAAGGCACGATGACCCACAGCAAAGTGCCAGAGAACTTGTCAAAGAAGCACTGCGCCTACACACAACAGATAATCTTACTGTAATTGTCATTTGCTTGTCTGCTGTCGAAAGCATTGTTGAATCATGTCCACCCCATAGGCGAAGATTTAGAGCTTGCTCTATGTCTGAAGAGGCTAGAAACAAATTGAGGAGCTTGCTAGAAAGCAACTGA

Protein sequence

>MS.gene058294.t1

MFTPKVRSGSCADIGPRGSMDDEHIQIDDLAAHLGFVLKYPTPSAFYAVFDGHGGPDAAVFVKNNAMKLFFDDTTMLETYDSDTLLLKRLEDSHRKAFLGADLLLADEQSISSSCGTTALTALILGRHLLVANAGDCRAVLCKRGVAVDMSQDHRPSYLPERKRVEELGGYIDDGYLNGYLSVTRALGDWDLKLPLGSASPLTAEPDVQVVTLTEEDEFLIIGCDGIWDVMSSQDAVSLVRRGLRRHDDPQQSARELVKEALRLHTTDNLTVIVICLSAVESIVESCPPHRRRFRACSMSEEARNKLRSLLESN