Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20576.t1 | XP_003607050.1 | 97.5 | 279 | 7 | 0 | 1 | 279 | 93 | 371 | 5.00E-163 | 583.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20576.t1 | Q9LHD2 | 68.0 | 269 | 80 | 3 | 1 | 268 | 86 | 349 | 1.2e-112 | 407.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20576.t1 | G7KJH6 | 97.5 | 279 | 7 | 0 | 1 | 279 | 93 | 371 | 3.6e-163 | 583.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051837 | MS.gene20576 | 0.848416 | 6.22E-60 | -1.69E-46 |
| MS.gene057093 | MS.gene20576 | 0.829702 | 4.44E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20576.t1 | MTR_6g008900 | 97.491 | 279 | 7 | 0 | 1 | 279 | 93 | 371 | 0.0 | 575 |
| MS.gene20576.t1 | MTR_4g071620 | 97.491 | 279 | 7 | 0 | 1 | 279 | 93 | 371 | 0.0 | 575 |
| MS.gene20576.t1 | MTR_5g036580 | 68.519 | 270 | 83 | 1 | 1 | 270 | 94 | 361 | 4.28e-140 | 400 |
| MS.gene20576.t1 | MTR_7g109210 | 66.045 | 268 | 82 | 3 | 1 | 268 | 93 | 351 | 3.75e-134 | 384 |
| MS.gene20576.t1 | MTR_3g092310 | 61.423 | 267 | 98 | 3 | 2 | 268 | 71 | 332 | 5.55e-124 | 357 |
| MS.gene20576.t1 | MTR_7g094230 | 60.949 | 274 | 100 | 3 | 1 | 274 | 83 | 349 | 9.26e-123 | 354 |
| MS.gene20576.t1 | MTR_8g078240 | 59.551 | 267 | 104 | 1 | 1 | 267 | 74 | 336 | 2.55e-121 | 350 |
| MS.gene20576.t1 | MTR_3g111600 | 61.423 | 267 | 97 | 2 | 1 | 267 | 12 | 272 | 6.41e-121 | 347 |
| MS.gene20576.t1 | MTR_1g021855 | 62.313 | 268 | 94 | 3 | 1 | 267 | 97 | 358 | 5.79e-120 | 348 |
| MS.gene20576.t1 | MTR_5g019220 | 59.176 | 267 | 107 | 1 | 1 | 267 | 94 | 358 | 3.11e-119 | 346 |
| MS.gene20576.t1 | MTR_4g118030 | 58.736 | 269 | 103 | 4 | 1 | 268 | 77 | 338 | 9.29e-117 | 339 |
| MS.gene20576.t1 | MTR_1g089820 | 61.151 | 278 | 98 | 5 | 1 | 278 | 86 | 353 | 5.17e-115 | 335 |
| MS.gene20576.t1 | MTR_2g461670 | 34.239 | 184 | 109 | 6 | 73 | 254 | 395 | 568 | 2.78e-25 | 105 |
| MS.gene20576.t1 | MTR_4g109890 | 33.333 | 201 | 122 | 7 | 73 | 272 | 340 | 529 | 7.19e-24 | 100 |
| MS.gene20576.t1 | MTR_2g015550 | 31.401 | 207 | 124 | 7 | 73 | 279 | 339 | 527 | 5.59e-22 | 95.5 |
| MS.gene20576.t1 | MTR_8g092000 | 32.000 | 175 | 111 | 5 | 73 | 247 | 384 | 550 | 1.34e-21 | 94.7 |
| MS.gene20576.t1 | MTR_7g055600 | 31.000 | 200 | 123 | 7 | 54 | 247 | 214 | 404 | 2.29e-21 | 93.2 |
| MS.gene20576.t1 | MTR_7g057530 | 31.000 | 200 | 123 | 7 | 54 | 247 | 214 | 404 | 2.29e-21 | 93.2 |
| MS.gene20576.t1 | MTR_8g033360 | 32.620 | 187 | 116 | 4 | 44 | 225 | 403 | 584 | 2.38e-20 | 90.9 |
| MS.gene20576.t1 | MTR_4g133570 | 31.000 | 200 | 120 | 8 | 73 | 265 | 261 | 449 | 2.68e-20 | 90.5 |
| MS.gene20576.t1 | MTR_7g075840 | 29.412 | 204 | 127 | 6 | 73 | 276 | 468 | 654 | 3.26e-20 | 90.5 |
| MS.gene20576.t1 | MTR_3g107930 | 29.245 | 212 | 137 | 5 | 44 | 250 | 358 | 561 | 3.83e-20 | 90.5 |
| MS.gene20576.t1 | MTR_3g107930 | 29.245 | 212 | 137 | 5 | 44 | 250 | 435 | 638 | 3.97e-20 | 90.5 |
| MS.gene20576.t1 | MTR_7g012370 | 28.729 | 181 | 116 | 6 | 73 | 247 | 334 | 507 | 3.42e-19 | 87.4 |
| MS.gene20576.t1 | MTR_6g016380 | 28.261 | 230 | 147 | 8 | 28 | 247 | 304 | 525 | 4.08e-19 | 87.4 |
| MS.gene20576.t1 | MTR_2g082650 | 29.778 | 225 | 137 | 10 | 51 | 265 | 184 | 397 | 6.38e-19 | 86.3 |
| MS.gene20576.t1 | MTR_2g027740 | 31.461 | 178 | 108 | 5 | 73 | 247 | 471 | 637 | 9.37e-19 | 86.3 |
| MS.gene20576.t1 | MTR_2g082650 | 29.778 | 225 | 137 | 10 | 51 | 265 | 313 | 526 | 1.14e-18 | 85.9 |
| MS.gene20576.t1 | MTR_3g452360 | 28.272 | 191 | 125 | 6 | 64 | 247 | 166 | 351 | 2.36e-15 | 75.5 |
| MS.gene20576.t1 | MTR_3g452360 | 28.272 | 191 | 125 | 6 | 64 | 247 | 315 | 500 | 4.90e-15 | 75.1 |
| MS.gene20576.t1 | MTR_7g096160 | 25.143 | 175 | 126 | 3 | 73 | 247 | 455 | 624 | 5.10e-14 | 72.4 |
| MS.gene20576.t1 | MTR_6g013840 | 29.530 | 149 | 97 | 4 | 103 | 247 | 358 | 502 | 9.21e-14 | 71.2 |
| MS.gene20576.t1 | MTR_2g006790 | 27.053 | 207 | 109 | 8 | 73 | 279 | 339 | 503 | 1.52e-12 | 67.8 |
| MS.gene20576.t1 | MTR_7g074680 | 31.928 | 166 | 92 | 9 | 103 | 265 | 403 | 550 | 5.62e-12 | 66.2 |
| MS.gene20576.t1 | MTR_7g074680 | 31.928 | 166 | 92 | 9 | 103 | 265 | 443 | 590 | 6.13e-12 | 65.9 |
| MS.gene20576.t1 | MTR_7g074680 | 31.928 | 166 | 92 | 9 | 103 | 265 | 463 | 610 | 6.87e-12 | 65.9 |
| MS.gene20576.t1 | MTR_7g074680 | 31.928 | 166 | 92 | 9 | 103 | 265 | 463 | 610 | 7.61e-12 | 65.9 |
| MS.gene20576.t1 | MTR_7g074680 | 31.928 | 166 | 92 | 9 | 103 | 265 | 500 | 647 | 7.92e-12 | 65.9 |
| MS.gene20576.t1 | MTR_7g074680 | 31.928 | 166 | 92 | 9 | 103 | 265 | 483 | 630 | 8.68e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20576.t1 | AT3G28340 | 66.909 | 275 | 85 | 3 | 1 | 274 | 86 | 355 | 4.26e-143 | 407 |
| MS.gene20576.t1 | AT1G70090 | 68.657 | 268 | 82 | 1 | 1 | 268 | 97 | 362 | 5.65e-141 | 402 |
| MS.gene20576.t1 | AT1G70090 | 68.657 | 268 | 82 | 1 | 1 | 268 | 97 | 362 | 5.65e-141 | 402 |
| MS.gene20576.t1 | AT1G24170 | 67.164 | 268 | 86 | 1 | 1 | 268 | 100 | 365 | 3.38e-138 | 395 |
| MS.gene20576.t1 | AT3G62660 | 67.537 | 268 | 78 | 3 | 1 | 268 | 98 | 356 | 7.58e-134 | 383 |
| MS.gene20576.t1 | AT4G02130 | 66.791 | 268 | 83 | 3 | 1 | 268 | 81 | 342 | 1.38e-132 | 379 |
| MS.gene20576.t1 | AT4G02130 | 66.791 | 268 | 83 | 3 | 1 | 268 | 81 | 342 | 1.38e-132 | 379 |
| MS.gene20576.t1 | AT4G02130 | 66.791 | 268 | 83 | 3 | 1 | 268 | 81 | 342 | 1.38e-132 | 379 |
| MS.gene20576.t1 | AT1G02720 | 63.569 | 269 | 90 | 5 | 1 | 268 | 96 | 357 | 4.34e-125 | 361 |
| MS.gene20576.t1 | AT1G02720 | 63.569 | 269 | 90 | 5 | 1 | 268 | 96 | 357 | 4.34e-125 | 361 |
| MS.gene20576.t1 | AT3G06260 | 62.313 | 268 | 95 | 5 | 1 | 268 | 81 | 342 | 2.34e-123 | 356 |
| MS.gene20576.t1 | AT3G50760 | 59.259 | 270 | 101 | 3 | 1 | 267 | 68 | 331 | 6.00e-117 | 339 |
| MS.gene20576.t1 | AT1G13250 | 61.194 | 268 | 98 | 3 | 1 | 268 | 75 | 336 | 1.31e-112 | 328 |
| MS.gene20576.t1 | AT1G19300 | 62.921 | 267 | 95 | 2 | 1 | 267 | 80 | 342 | 6.09e-112 | 327 |
| MS.gene20576.t1 | AT1G18580 | 29.078 | 282 | 157 | 11 | 4 | 254 | 246 | 515 | 2.21e-26 | 108 |
| MS.gene20576.t1 | AT3G25140 | 30.348 | 201 | 123 | 6 | 54 | 247 | 339 | 529 | 2.89e-22 | 96.7 |
| MS.gene20576.t1 | AT4G38270 | 30.144 | 209 | 133 | 5 | 44 | 247 | 446 | 646 | 5.56e-22 | 95.9 |
| MS.gene20576.t1 | AT4G38270 | 30.144 | 209 | 133 | 5 | 44 | 247 | 450 | 650 | 5.68e-22 | 95.9 |
| MS.gene20576.t1 | AT5G47780 | 33.143 | 175 | 109 | 5 | 73 | 247 | 420 | 586 | 3.97e-21 | 93.2 |
| MS.gene20576.t1 | AT3G61130 | 30.342 | 234 | 141 | 8 | 28 | 250 | 424 | 646 | 5.25e-21 | 93.2 |
| MS.gene20576.t1 | AT3G01040 | 28.571 | 189 | 124 | 6 | 73 | 255 | 329 | 512 | 2.35e-20 | 90.9 |
| MS.gene20576.t1 | AT3G01040 | 28.571 | 189 | 124 | 6 | 73 | 255 | 329 | 512 | 2.35e-20 | 90.9 |
| MS.gene20576.t1 | AT3G01040 | 28.571 | 189 | 124 | 6 | 73 | 255 | 296 | 479 | 2.53e-20 | 90.9 |
| MS.gene20576.t1 | AT5G15470 | 28.796 | 191 | 121 | 7 | 73 | 255 | 329 | 512 | 2.28e-19 | 88.2 |
| MS.gene20576.t1 | AT3G58790 | 30.000 | 180 | 116 | 6 | 73 | 247 | 204 | 378 | 3.04e-19 | 87.0 |
| MS.gene20576.t1 | AT3G58790 | 29.050 | 179 | 119 | 5 | 73 | 247 | 336 | 510 | 5.82e-19 | 86.7 |
| MS.gene20576.t1 | AT5G54690 | 28.492 | 179 | 119 | 5 | 73 | 247 | 331 | 504 | 8.42e-19 | 86.3 |
| MS.gene20576.t1 | AT3G02350 | 31.100 | 209 | 130 | 6 | 44 | 247 | 332 | 531 | 8.33e-18 | 83.6 |
| MS.gene20576.t1 | AT2G30575 | 30.286 | 175 | 117 | 3 | 73 | 247 | 411 | 580 | 8.56e-18 | 83.6 |
| MS.gene20576.t1 | AT2G46480 | 30.899 | 178 | 115 | 5 | 73 | 250 | 344 | 513 | 1.33e-17 | 82.8 |
| MS.gene20576.t1 | AT2G46480 | 30.899 | 178 | 115 | 5 | 73 | 250 | 357 | 526 | 1.37e-17 | 82.8 |
| MS.gene20576.t1 | AT1G06780 | 28.571 | 175 | 120 | 3 | 73 | 247 | 403 | 572 | 1.43e-16 | 79.7 |
| MS.gene20576.t1 | AT1G06780 | 28.571 | 175 | 120 | 3 | 73 | 247 | 390 | 559 | 1.87e-16 | 79.3 |
| MS.gene20576.t1 | AT2G20810 | 34.831 | 178 | 107 | 5 | 73 | 250 | 342 | 510 | 1.96e-15 | 76.3 |
Find 47 sgRNAs with CRISPR-Local
Find 57 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATGATATTCAAGATTTA+TGG | 0.160378 | 6.3:-4690283 | MS.gene20576:CDS |
| ATATGGACATTCATTGATTT+AGG | 0.240908 | 6.3:-4689766 | None:intergenic |
| TATATGCCTCATGTGGGATA+TGG | 0.327711 | 6.3:-4689783 | MS.gene20576:CDS |
| CTCCAATGTAACAAACTAAC+TGG | 0.371144 | 6.3:+4689885 | None:intergenic |
| TGTTACATTGGAGTGGTAAA+GGG | 0.388590 | 6.3:-4689875 | MS.gene20576:CDS |
| TCAAGTGCTTGTCTTATTGA+AGG | 0.389187 | 6.3:+4690398 | None:intergenic |
| TTGAAGCTATTGAACATAGA+TGG | 0.398424 | 6.3:-4689968 | MS.gene20576:CDS |
| AGAATAAAGATGAGTTTACT+AGG | 0.399390 | 6.3:-4690499 | MS.gene20576:CDS |
| GTGAGAAGGGTTTATAAGCT+TGG | 0.416693 | 6.3:-4690029 | MS.gene20576:CDS |
| TTGTTACATTGGAGTGGTAA+AGG | 0.425011 | 6.3:-4689876 | MS.gene20576:CDS |
| GTCCAGTTAGTTTGTTACAT+TGG | 0.426248 | 6.3:-4689887 | MS.gene20576:CDS |
| GAGTTTACTAGGATTGTTCA+TGG | 0.433334 | 6.3:-4690488 | MS.gene20576:CDS |
| TTATGGAAGGTTTCGTTGAC+CGG | 0.444509 | 6.3:-4690266 | MS.gene20576:CDS |
| AAATTTGCATGACAATATTC+CGG | 0.448533 | 6.3:+4690224 | None:intergenic |
| ACACAAAGAAGATTGAGAAA+TGG | 0.449104 | 6.3:-4690067 | MS.gene20576:CDS |
| TGGTAATGGATTTGGTGAAA+TGG | 0.449678 | 6.3:-4690103 | MS.gene20576:CDS |
| CAACACTGGTGTGATGGTAA+TGG | 0.479656 | 6.3:-4690117 | MS.gene20576:CDS |
| TAAACTTTGAATTTCAATGA+AGG | 0.482539 | 6.3:+4690458 | None:intergenic |
| TAACTTCTTGCATAATTCAA+AGG | 0.483151 | 6.3:+4690371 | None:intergenic |
| TGAGGCATATAAAGATCATA+AGG | 0.488978 | 6.3:+4689795 | None:intergenic |
| TGGTGTGATGGTAATGGATT+TGG | 0.491814 | 6.3:-4690111 | MS.gene20576:CDS |
| AGATGGAATCAACATGGTCT+TGG | 0.496429 | 6.3:-4689951 | MS.gene20576:CDS |
| GAAATGGATGGAAATTCAAA+AGG | 0.498984 | 6.3:-4690051 | MS.gene20576:CDS |
| GGAAATTCAAAAGGTGAGAA+GGG | 0.517101 | 6.3:-4690042 | MS.gene20576:CDS |
| TTGACCGGATCGAAGGTAAT+CGG | 0.520100 | 6.3:-4690251 | MS.gene20576:CDS |
| ATTGCATCAAGTCTTCTCCA+TGG | 0.528733 | 6.3:+4689849 | None:intergenic |
| TGGAAATTCAAAAGGTGAGA+AGG | 0.532785 | 6.3:-4690043 | MS.gene20576:CDS |
| TGATCTTTATATGCCTCATG+TGG | 0.542660 | 6.3:-4689790 | MS.gene20576:CDS |
| AGTTGTAGAAGTTTGCATCC+TGG | 0.544023 | 6.3:-4689909 | MS.gene20576:CDS |
| GGTTTCGTTGACCGGATCGA+AGG | 0.548154 | 6.3:-4690258 | MS.gene20576:CDS |
| AAAGAAGATTGAGAAATGGA+TGG | 0.561407 | 6.3:-4690063 | MS.gene20576:CDS |
| GTTAGTTTGTTACATTGGAG+TGG | 0.566455 | 6.3:-4689882 | MS.gene20576:CDS |
| ATCGAAGGTAATCGGTGCAC+CGG | 0.567159 | 6.3:-4690243 | MS.gene20576:CDS |
| TGGAATCAACATGGTCTTGG+TGG | 0.582134 | 6.3:-4689948 | MS.gene20576:CDS |
| AAGCCATGTTATTTCAACAC+TGG | 0.583969 | 6.3:-4690131 | MS.gene20576:CDS |
| TGCACCGATTACCTTCGATC+CGG | 0.596738 | 6.3:+4690247 | None:intergenic |
| TGTAACAAACTAACTGGACC+AGG | 0.606289 | 6.3:+4689891 | None:intergenic |
| TGATATTCAAGATTTATGGA+AGG | 0.616697 | 6.3:-4690279 | MS.gene20576:CDS |
| GATCTTTATATGCCTCATGT+GGG | 0.625084 | 6.3:-4689789 | MS.gene20576:CDS |
| TTATTTCAACACTGGTGTGA+TGG | 0.626622 | 6.3:-4690123 | MS.gene20576:CDS |
| ACACCAGTGTTGAAATAACA+TGG | 0.638418 | 6.3:+4690128 | None:intergenic |
| GAATGTCCATATCCCACATG+AGG | 0.644433 | 6.3:+4689777 | None:intergenic |
| GGAGAAGACTTGATGCAATG+AGG | 0.649459 | 6.3:-4689845 | MS.gene20576:CDS |
| GATTTGGTGAAATGGAGAGA+AGG | 0.660269 | 6.3:-4690095 | MS.gene20576:CDS |
| GGAGTGGTAAAGGGAAACCA+TGG | 0.670933 | 6.3:-4689866 | MS.gene20576:CDS |
| ATTGTCATGCAAATTTCACA+AGG | 0.680182 | 6.3:-4690217 | MS.gene20576:CDS |
| GAACATAGATGGAATCAACA+TGG | 0.707717 | 6.3:-4689957 | MS.gene20576:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAAAAAACAAATTCTT+AGG | + | chr6.3:4689809-4689828 | None:intergenic | 15.0% |
| !! | TAAACTTTGAATTTCAATGA+AGG | + | chr6.3:4689896-4689915 | None:intergenic | 20.0% |
| !!! | TTGATGATATTCAAGATTTA+TGG | - | chr6.3:4690068-4690087 | MS.gene20576:CDS | 20.0% |
| ! | AAATTTGCATGACAATATTC+CGG | + | chr6.3:4690130-4690149 | None:intergenic | 25.0% |
| ! | AGAATAAAGATGAGTTTACT+AGG | - | chr6.3:4689852-4689871 | MS.gene20576:CDS | 25.0% |
| ! | TAACTTCTTGCATAATTCAA+AGG | + | chr6.3:4689983-4690002 | None:intergenic | 25.0% |
| ! | TGATATTCAAGATTTATGGA+AGG | - | chr6.3:4690072-4690091 | MS.gene20576:CDS | 25.0% |
| AAAGAAGATTGAGAAATGGA+TGG | - | chr6.3:4690288-4690307 | MS.gene20576:CDS | 30.0% | |
| ACACAAAGAAGATTGAGAAA+TGG | - | chr6.3:4690284-4690303 | MS.gene20576:CDS | 30.0% | |
| ATTGTCATGCAAATTTCACA+AGG | - | chr6.3:4690134-4690153 | MS.gene20576:CDS | 30.0% | |
| CACAAAAAATCAACAGAACA+AGG | + | chr6.3:4690532-4690551 | None:intergenic | 30.0% | |
| GAAATGGATGGAAATTCAAA+AGG | - | chr6.3:4690300-4690319 | MS.gene20576:CDS | 30.0% | |
| TGAGGCATATAAAGATCATA+AGG | + | chr6.3:4690559-4690578 | None:intergenic | 30.0% | |
| TTGAAGCTATTGAACATAGA+TGG | - | chr6.3:4690383-4690402 | MS.gene20576:CDS | 30.0% | |
| ! | GTCAAGTTATGAATTTTCTG+AGG | - | chr6.3:4690177-4690196 | MS.gene20576:CDS | 30.0% |
| !!! | ATCATTACCTCCTTTTTTGA+TGG | - | chr6.3:4690345-4690364 | MS.gene20576:CDS | 30.0% |
| !!! | CTTGTTCTGTTGATTTTTTG+TGG | - | chr6.3:4690530-4690549 | MS.gene20576:CDS | 30.0% |
| !!! | GAATTTTCTGAGGTGTTTAA+AGG | - | chr6.3:4690187-4690206 | MS.gene20576:CDS | 30.0% |
| !!! | GGTATTTTAGCTATGAGTTT+TGG | - | chr6.3:4690155-4690174 | MS.gene20576:CDS | 30.0% |
| CCAAAAACCATCAAAAAAGG+AGG | + | chr6.3:4690355-4690374 | None:intergenic | 35.0% | |
| CCACCAAAAACCATCAAAAA+AGG | + | chr6.3:4690358-4690377 | None:intergenic | 35.0% | |
| CTCCAATGTAACAAACTAAC+TGG | + | chr6.3:4690469-4690488 | None:intergenic | 35.0% | |
| GAACATAGATGGAATCAACA+TGG | - | chr6.3:4690394-4690413 | MS.gene20576:CDS | 35.0% | |
| GAGTTTACTAGGATTGTTCA+TGG | - | chr6.3:4689863-4689882 | MS.gene20576:CDS | 35.0% | |
| GATCTTTATATGCCTCATGT+GGG | - | chr6.3:4690562-4690581 | MS.gene20576:CDS | 35.0% | |
| GGAAATTCAAAAGGTGAGAA+GGG | - | chr6.3:4690309-4690328 | MS.gene20576:CDS | 35.0% | |
| TGATCTTTATATGCCTCATG+TGG | - | chr6.3:4690561-4690580 | MS.gene20576:CDS | 35.0% | |
| TGGAAATTCAAAAGGTGAGA+AGG | - | chr6.3:4690308-4690327 | MS.gene20576:CDS | 35.0% | |
| TGTTACATTGGAGTGGTAAA+GGG | - | chr6.3:4690476-4690495 | MS.gene20576:CDS | 35.0% | |
| TTATTTCAACACTGGTGTGA+TGG | - | chr6.3:4690228-4690247 | MS.gene20576:CDS | 35.0% | |
| TTGTTACATTGGAGTGGTAA+AGG | - | chr6.3:4690475-4690494 | MS.gene20576:CDS | 35.0% | |
| ! | ACACCAGTGTTGAAATAACA+TGG | + | chr6.3:4690226-4690245 | None:intergenic | 35.0% |
| ! | TCAAGTGCTTGTCTTATTGA+AGG | + | chr6.3:4689956-4689975 | None:intergenic | 35.0% |
| !! | AAGCCATGTTATTTCAACAC+TGG | - | chr6.3:4690220-4690239 | MS.gene20576:CDS | 35.0% |
| !! | GTCCAGTTAGTTTGTTACAT+TGG | - | chr6.3:4690464-4690483 | MS.gene20576:CDS | 35.0% |
| !! | GTTAGTTTGTTACATTGGAG+TGG | - | chr6.3:4690469-4690488 | MS.gene20576:CDS | 35.0% |
| !! | TGGTAATGGATTTGGTGAAA+TGG | - | chr6.3:4690248-4690267 | MS.gene20576:CDS | 35.0% |
| !!! | CCTCCTTTTTTGATGGTTTT+TGG | - | chr6.3:4690352-4690371 | MS.gene20576:CDS | 35.0% |
| !!! | CCTTTTTTGATGGTTTTTGG+TGG | - | chr6.3:4690355-4690374 | MS.gene20576:CDS | 35.0% |
| AGATGGAATCAACATGGTCT+TGG | - | chr6.3:4690400-4690419 | MS.gene20576:CDS | 40.0% | |
| AGTTGTAGAAGTTTGCATCC+TGG | - | chr6.3:4690442-4690461 | MS.gene20576:CDS | 40.0% | |
| ATTGCATCAAGTCTTCTCCA+TGG | + | chr6.3:4690505-4690524 | None:intergenic | 40.0% | |
| GTGAGAAGGGTTTATAAGCT+TGG | - | chr6.3:4690322-4690341 | MS.gene20576:CDS | 40.0% | |
| TATATGCCTCATGTGGGATA+TGG | - | chr6.3:4690568-4690587 | MS.gene20576:CDS | 40.0% | |
| TGTAACAAACTAACTGGACC+AGG | + | chr6.3:4690463-4690482 | None:intergenic | 40.0% | |
| TTATGGAAGGTTTCGTTGAC+CGG | - | chr6.3:4690085-4690104 | MS.gene20576:CDS | 40.0% | |
| !! | GATTTGGTGAAATGGAGAGA+AGG | - | chr6.3:4690256-4690275 | MS.gene20576:CDS | 40.0% |
| !! | TGGTGTGATGGTAATGGATT+TGG | - | chr6.3:4690240-4690259 | MS.gene20576:CDS | 40.0% |
| CAACACTGGTGTGATGGTAA+TGG | - | chr6.3:4690234-4690253 | MS.gene20576:CDS | 45.0% | |
| GAATGTCCATATCCCACATG+AGG | + | chr6.3:4690577-4690596 | None:intergenic | 45.0% | |
| GGAGAAGACTTGATGCAATG+AGG | - | chr6.3:4690506-4690525 | MS.gene20576:CDS | 45.0% | |
| TTGACCGGATCGAAGGTAAT+CGG | - | chr6.3:4690100-4690119 | MS.gene20576:CDS | 45.0% | |
| ! | TGGAATCAACATGGTCTTGG+TGG | - | chr6.3:4690403-4690422 | MS.gene20576:CDS | 45.0% |
| ATCGAAGGTAATCGGTGCAC+CGG | - | chr6.3:4690108-4690127 | MS.gene20576:CDS | 50.0% | |
| GGAGTGGTAAAGGGAAACCA+TGG | - | chr6.3:4690485-4690504 | MS.gene20576:CDS | 50.0% | |
| !! | TGCACCGATTACCTTCGATC+CGG | + | chr6.3:4690107-4690126 | None:intergenic | 50.0% |
| GGTTTCGTTGACCGGATCGA+AGG | - | chr6.3:4690093-4690112 | MS.gene20576:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 4689767 | 4690606 | 4689767 | ID=MS.gene20576 |
| chr6.3 | mRNA | 4689767 | 4690606 | 4689767 | ID=MS.gene20576.t1;Parent=MS.gene20576 |
| chr6.3 | exon | 4689767 | 4690606 | 4689767 | ID=MS.gene20576.t1.exon1;Parent=MS.gene20576.t1 |
| chr6.3 | CDS | 4689767 | 4690606 | 4689767 | ID=cds.MS.gene20576.t1;Parent=MS.gene20576.t1 |
| Gene Sequence |
| Protein sequence |
