Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20719.t1 | XP_024639656.1 | 98.6 | 1112 | 16 | 0 | 14 | 1125 | 128 | 1239 | 0.00E+00 | 2125.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20719.t1 | Q7ZZ25 | 40.3 | 295 | 171 | 2 | 813 | 1103 | 84 | 377 | 9.4e-60 | 233.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20719.t1 | G7IF85 | 98.6 | 1112 | 16 | 0 | 14 | 1125 | 126 | 1237 | 0.0e+00 | 2125.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051209 | MS.gene20719 | 0.830748 | 2.47E-55 | -1.69E-46 |
MS.gene053486 | MS.gene20719 | 0.886504 | 3.23E-72 | -1.69E-46 |
MS.gene053620 | MS.gene20719 | 0.80375 | 3.00E-49 | -1.69E-46 |
MS.gene058289 | MS.gene20719 | 0.850552 | 1.58E-60 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 255 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTAAAATCTTCCATCTTTA+AGG | 0.032648 | 1.2:+66378000 | None:intergenic |
CCATTATTGCACAAGCTTTC+TGG | 0.082182 | 1.2:-66386323 | MS.gene20719:CDS |
CATCTGTAAGCTATCCTTTA+AGG | 0.090387 | 1.2:+66386178 | None:intergenic |
AGCCTTCTGTTTACAAAATT+TGG | 0.139794 | 1.2:-66383626 | MS.gene20719:CDS |
TTCTCCAAGATCTCCCTTAT+TGG | 0.143414 | 1.2:+66379267 | None:intergenic |
CCACAGAATGTTGTAGTAAT+TGG | 0.183954 | 1.2:-66383802 | MS.gene20719:CDS |
TAAAATGAAGAATGAGTTTA+TGG | 0.190912 | 1.2:-66379768 | MS.gene20719:CDS |
CTAGATGTGGAGAAGATTAT+TGG | 0.196808 | 1.2:-66382177 | MS.gene20719:intron |
TATTTGCACCTTAGATAATA+TGG | 0.203021 | 1.2:+66386110 | None:intergenic |
AGAATGAGTTTATGGTTAAT+TGG | 0.207336 | 1.2:-66379760 | MS.gene20719:CDS |
TTGAGTTGCTTCATTACTTT+GGG | 0.207730 | 1.2:+66383314 | None:intergenic |
ATGTGGATCCACCTATAATT+TGG | 0.208109 | 1.2:+66385204 | None:intergenic |
AAGGCACTTGCAAAGCATTT+TGG | 0.225785 | 1.2:-66385619 | MS.gene20719:CDS |
AAGCATGACCAATTCCTTTA+AGG | 0.225791 | 1.2:+66381601 | None:intergenic |
ATCTGTATTGTAACTTTGTT+TGG | 0.230826 | 1.2:+66383281 | None:intergenic |
GTTATTCCACCAACTGATAT+TGG | 0.238629 | 1.2:-66381668 | MS.gene20719:CDS |
GCCCAAGCAACAAGCCTTAA+AGG | 0.243418 | 1.2:-66386192 | MS.gene20719:CDS |
GAAGTTGTCTTTGGTGTTTC+CGG | 0.243873 | 1.2:-66387009 | MS.gene20719:CDS |
TTGGGGTATCAACATCTTTA+AGG | 0.244546 | 1.2:+66386228 | None:intergenic |
TGTTGCTGGAGCTTCATTAT+TGG | 0.246217 | 1.2:-66386648 | MS.gene20719:CDS |
TCTATCTGGTTCGTCATTAA+TGG | 0.260881 | 1.2:+66386481 | None:intergenic |
TGTCCTTTGCAAAATAATTC+AGG | 0.261823 | 1.2:+66381566 | None:intergenic |
TCCTTTAAGGCTTGTTGCTT+GGG | 0.278495 | 1.2:+66386191 | None:intergenic |
ATCACAGGCTTTGATTCTTC+AGG | 0.286755 | 1.2:+66382111 | None:intergenic |
TGTTAGAGTTTGATCTTTGA+TGG | 0.305050 | 1.2:+66382292 | None:intergenic |
TAGTTTCTACGTCACGTTCT+AGG | 0.306149 | 1.2:+66383132 | None:intergenic |
TTATTCCACCAACTGATATT+GGG | 0.306831 | 1.2:-66381667 | MS.gene20719:CDS |
ATTCAGGTGCTCAACAAGTT+TGG | 0.316901 | 1.2:-66382344 | MS.gene20719:intron |
CTTACGTTCTTCCAATATCT+TGG | 0.317901 | 1.2:+66386265 | None:intergenic |
CCTCAGATGAATGCATAAAA+TGG | 0.319488 | 1.2:+66382139 | None:intergenic |
AAATGTTAAGGACACCTTAA+AGG | 0.320502 | 1.2:-66381615 | MS.gene20719:CDS |
GTTCTTTCAGTCCTTGGAAT+TGG | 0.321363 | 1.2:+66385305 | None:intergenic |
AAAGTTTCCCATATTATCTA+AGG | 0.321609 | 1.2:-66386118 | MS.gene20719:intron |
TGCCTTATCATCCCCATTGC+TGG | 0.323971 | 1.2:+66386526 | None:intergenic |
TTAAAATCTTCCATCTTTAA+GGG | 0.327751 | 1.2:+66378001 | None:intergenic |
CAATTGTGCAGCATTCAGTA+TGG | 0.327950 | 1.2:-66381947 | MS.gene20719:intron |
TGTGGTGCTGTGAAAGTTAA+TGG | 0.332291 | 1.2:-66387078 | MS.gene20719:CDS |
GGAGACCTGTCGTCTGTTGC+TGG | 0.332943 | 1.2:-66386662 | MS.gene20719:CDS |
ATGGAAAGAGTCTCAAGTTC+AGG | 0.333247 | 1.2:+66382311 | None:intergenic |
GTTGAGTTGCTTCATTACTT+TGG | 0.333362 | 1.2:+66383313 | None:intergenic |
CCAGAAAGCTTGTGCAATAA+TGG | 0.334461 | 1.2:+66386323 | None:intergenic |
GGAAGAACGTAAGGAATTAA+AGG | 0.335163 | 1.2:-66386255 | MS.gene20719:CDS |
AGGTTCATCTGTTGCATTGC+TGG | 0.338194 | 1.2:-66387115 | MS.gene20719:CDS |
TGTAGGCTCTGAAATATATC+AGG | 0.339494 | 1.2:-66385653 | MS.gene20719:intron |
CTGCAGCGCACTGTCCAATA+AGG | 0.340976 | 1.2:-66379281 | MS.gene20719:CDS |
GGGGTCTCATTCAATGATAT+TGG | 0.344937 | 1.2:-66381647 | MS.gene20719:CDS |
AGTGTTGATGCCCAAATTAT+AGG | 0.346504 | 1.2:-66385215 | MS.gene20719:CDS |
ATCTTGATGAGGCTGTTATT+AGG | 0.349168 | 1.2:-66379673 | MS.gene20719:CDS |
ACTTCTACAGCAACAACATT+TGG | 0.350121 | 1.2:+66386404 | None:intergenic |
TTCATACAAACTTACCTTGA+AGG | 0.355496 | 1.2:+66384920 | None:intergenic |
GTGGATTCTCTTTCACCTCC+TGG | 0.355796 | 1.2:-66385580 | MS.gene20719:CDS |
ATAGATGTTCTTTCAGTCCT+TGG | 0.357740 | 1.2:+66385299 | None:intergenic |
ATCCTTTAAGGCTTGTTGCT+TGG | 0.358220 | 1.2:+66386190 | None:intergenic |
GCCCAGGGTGCTTCAATAAC+TGG | 0.361825 | 1.2:-66386707 | MS.gene20719:CDS |
TGGCAACATTGCCAAGATAT+TGG | 0.363175 | 1.2:-66386276 | MS.gene20719:CDS |
ACCTTCTCTTTACGATTGTC+CGG | 0.363587 | 1.2:+66383766 | None:intergenic |
TAAGGACACCTTAAAGGAAT+TGG | 0.369223 | 1.2:-66381609 | MS.gene20719:CDS |
TGGCAGGTTGATAGTATGTT+GGG | 0.371515 | 1.2:-66379827 | MS.gene20719:intron |
AATCATTTGGTACTGGTAGA+TGG | 0.376647 | 1.2:-66384075 | MS.gene20719:CDS |
TTGCCACTCAAATCAAATTC+AGG | 0.378643 | 1.2:+66386293 | None:intergenic |
AAGTTGTCTTTGGTGTTTCC+GGG | 0.382490 | 1.2:-66387008 | MS.gene20719:CDS |
AGCACCCTGGGCTTCTAAAA+TGG | 0.383102 | 1.2:+66386718 | None:intergenic |
CACAACCTTTAGGTCACTTC+CGG | 0.383773 | 1.2:+66379410 | None:intergenic |
GAGGAAACTCTACCTCTATA+TGG | 0.389268 | 1.2:+66387388 | None:intergenic |
CTCCAATGGAATGACCTCTA+TGG | 0.389872 | 1.2:-66377782 | MS.gene20719:CDS |
GTAGAATCAACTTCCTTCAA+TGG | 0.391373 | 1.2:+66385338 | None:intergenic |
GTTGCATTGCTGGAAATCAT+AGG | 0.391606 | 1.2:-66387105 | MS.gene20719:CDS |
CTTTGGTGTTTCCGGGAAGC+AGG | 0.396949 | 1.2:-66387001 | MS.gene20719:CDS |
ATGAGGCTTTACTTTCTGAT+TGG | 0.397144 | 1.2:-66383163 | MS.gene20719:CDS |
AATGTCGTCAATGTAATTTA+TGG | 0.397217 | 1.2:-66387452 | MS.gene20719:CDS |
CGCATAGCCTCGTGCTCACC+AGG | 0.399699 | 1.2:+66379791 | None:intergenic |
GATATAGAGAAGGGTGTGGC+TGG | 0.400694 | 1.2:-66383862 | MS.gene20719:CDS |
AACATTTGGATCTTCATTAA+CGG | 0.409088 | 1.2:+66386418 | None:intergenic |
TGTGGATCCACCTATAATTT+GGG | 0.412098 | 1.2:+66385205 | None:intergenic |
TCTGTATTGTAACTTTGTTT+GGG | 0.412866 | 1.2:+66383282 | None:intergenic |
GAATGAGTTTATGGTTAATT+GGG | 0.413193 | 1.2:-66379759 | MS.gene20719:CDS |
TTTGTCTGCAGCCAATCATT+TGG | 0.414264 | 1.2:-66384088 | MS.gene20719:intron |
CATCACTACCTGCCAGCAAT+GGG | 0.417101 | 1.2:-66386538 | MS.gene20719:CDS |
TGCTATTAATGAAATCTTTG+AGG | 0.419404 | 1.2:-66384025 | MS.gene20719:intron |
GGGACCAAGTTATGGCTGCC+GGG | 0.422070 | 1.2:-66384336 | MS.gene20719:CDS |
GGATACATAAGCCTGCTTCC+CGG | 0.424494 | 1.2:+66386990 | None:intergenic |
TGGAGCTTTAGAAAATGTTA+AGG | 0.425250 | 1.2:-66381627 | MS.gene20719:CDS |
TCCCCACGGATATTGTTATC+TGG | 0.425700 | 1.2:-66385784 | MS.gene20719:CDS |
TACATCATTTGCAGGTGATC+GGG | 0.427726 | 1.2:-66384993 | MS.gene20719:intron |
CATTTGAAGTGCAATGGCTC+TGG | 0.431023 | 1.2:-66385835 | MS.gene20719:CDS |
GGAGGTGATGAAGTTGTCTT+TGG | 0.434036 | 1.2:-66387018 | MS.gene20719:CDS |
TTGTTCTTGCTGCCACGAAC+AGG | 0.435916 | 1.2:-66379703 | MS.gene20719:CDS |
GTATGGGTTTAACATTCTAC+AGG | 0.438580 | 1.2:-66381930 | MS.gene20719:CDS |
ATTCCAGATGGAAATGATCT+TGG | 0.439599 | 1.2:-66384248 | MS.gene20719:CDS |
GGTCACAGGAGAAGGTATAT+TGG | 0.441217 | 1.2:+66386739 | None:intergenic |
ACTTTACGAGGCTACATGAT+AGG | 0.441619 | 1.2:-66383349 | MS.gene20719:CDS |
CTGTCCAATAAGGGAGATCT+TGG | 0.447558 | 1.2:-66379271 | MS.gene20719:CDS |
AAACAGAAGGCTGCCAGGTT+GGG | 0.449432 | 1.2:+66383637 | None:intergenic |
TACTGGTAGATGGTTGTGGA+GGG | 0.454538 | 1.2:-66384065 | MS.gene20719:CDS |
ACGCAACTTGATGCAAGATC+TGG | 0.456954 | 1.2:-66386683 | MS.gene20719:CDS |
TGGGCGATGTCAATAGTGTT+GGG | 0.457218 | 1.2:+66386210 | None:intergenic |
ATTTGCACCTTAGATAATAT+GGG | 0.459182 | 1.2:+66386111 | None:intergenic |
TTGCCCCGGCAGCCATAACT+TGG | 0.461201 | 1.2:+66384332 | None:intergenic |
AAGTAATGAAGCAACTCAAC+AGG | 0.461980 | 1.2:-66383310 | MS.gene20719:CDS |
CAATAATGGTCTCAATTTGC+AGG | 0.464240 | 1.2:+66386337 | None:intergenic |
TGCCAGCAATGGGGATGATA+AGG | 0.467937 | 1.2:-66386528 | MS.gene20719:CDS |
ACATAACATGTTTACCTTCG+CGG | 0.471242 | 1.2:+66379644 | None:intergenic |
AAGGCGGTAGCAACTGAAGC+TGG | 0.471387 | 1.2:-66381347 | MS.gene20719:CDS |
TTACATCATTTGCAGGTGAT+CGG | 0.472566 | 1.2:-66384994 | MS.gene20719:intron |
GCCTCTAGTCTGAGTAAAAG+TGG | 0.475923 | 1.2:-66383907 | MS.gene20719:CDS |
GTCATTCCATTGGAGTAGTT+CGG | 0.476821 | 1.2:+66377790 | None:intergenic |
GCTGAGAACAAGCCTTTACC+TGG | 0.480563 | 1.2:-66378049 | MS.gene20719:CDS |
ATCTACCAGTACCAAATGAT+TGG | 0.481031 | 1.2:+66384077 | None:intergenic |
ATCTTCATTAACGGTGGTAG+AGG | 0.482174 | 1.2:+66386427 | None:intergenic |
TCCAGTTATTGAAGCACCCT+GGG | 0.482949 | 1.2:+66386706 | None:intergenic |
CTCCATAGAGGTCATTCCAT+TGG | 0.485285 | 1.2:+66377780 | None:intergenic |
GGGGACCAAGTTATGGCTGC+CGG | 0.487323 | 1.2:-66384337 | MS.gene20719:CDS |
TTCCAGTTATTGAAGCACCC+TGG | 0.490670 | 1.2:+66386705 | None:intergenic |
TCTAAAATGGTCACAGGAGA+AGG | 0.491145 | 1.2:+66386731 | None:intergenic |
CTTCTGTTTACAAAATTTGG+AGG | 0.495032 | 1.2:-66383623 | MS.gene20719:CDS |
TGCAGCGCACTGTCCAATAA+GGG | 0.495974 | 1.2:-66379280 | MS.gene20719:CDS |
CCAGATGGAAATGATCTTGG+AGG | 0.498269 | 1.2:-66384245 | MS.gene20719:CDS |
TTGAGCAGGGGACCAAGTTA+TGG | 0.499326 | 1.2:-66384344 | MS.gene20719:intron |
TTGCAAAGGACAACTAACTA+AGG | 0.500266 | 1.2:-66381555 | MS.gene20719:intron |
GTGGCAGGTTGATAGTATGT+TGG | 0.501167 | 1.2:-66379828 | MS.gene20719:intron |
TAAACAGAAGGCTGCCAGGT+TGG | 0.501360 | 1.2:+66383636 | None:intergenic |
ACAGCCTCATCAAGATCAAA+AGG | 0.502213 | 1.2:+66379680 | None:intergenic |
TTTGTAAACAGAAGGCTGCC+AGG | 0.505631 | 1.2:+66383632 | None:intergenic |
TGGTCATGCTTCCTCTTCAA+AGG | 0.505751 | 1.2:-66381589 | MS.gene20719:CDS |
GTGCAAATTGAGCCATATAG+AGG | 0.509938 | 1.2:-66387400 | MS.gene20719:intron |
TTGGGCGATGTCAATAGTGT+TGG | 0.511370 | 1.2:+66386209 | None:intergenic |
ATAAATTACATTGACGACAT+TGG | 0.511735 | 1.2:+66387454 | None:intergenic |
ATTTCTACGGCATCATCAAA+AGG | 0.511918 | 1.2:-66385152 | MS.gene20719:CDS |
CAAGATATTGGAAGAACGTA+AGG | 0.511980 | 1.2:-66386264 | MS.gene20719:CDS |
GGTGCTCAACAAGTTTGGAC+TGG | 0.512177 | 1.2:-66382339 | MS.gene20719:CDS |
TGCAGCCAATCATTTGGTAC+TGG | 0.512480 | 1.2:-66384082 | MS.gene20719:intron |
CATTGGCCAACAGTGTAGAT+AGG | 0.515955 | 1.2:+66387471 | None:intergenic |
TGGAGCGTGGCTACTAATTG+TGG | 0.516394 | 1.2:-66385599 | MS.gene20719:CDS |
GATCTTGGAGAAGGAAAAGA+AGG | 0.516560 | 1.2:-66379256 | MS.gene20719:intron |
ACTGGTAGATGGTTGTGGAG+GGG | 0.517417 | 1.2:-66384064 | MS.gene20719:CDS |
TTATCATCCCCATTGCTGGC+AGG | 0.517463 | 1.2:+66386530 | None:intergenic |
TACATTCATTTGAAGTGCAA+TGG | 0.517785 | 1.2:-66385841 | MS.gene20719:CDS |
AATGCTTCTAAATTAACATC+AGG | 0.518572 | 1.2:+66379456 | None:intergenic |
TCATCACTACCTGCCAGCAA+TGG | 0.521375 | 1.2:-66386539 | MS.gene20719:CDS |
GGTTGTGGAGGGGATGACTC+TGG | 0.521742 | 1.2:-66384054 | MS.gene20719:CDS |
TTGTTGCAGTGGTTTGGTGA+AGG | 0.522165 | 1.2:-66381199 | MS.gene20719:intron |
GAGTTTATGGTTAATTGGGA+TGG | 0.522278 | 1.2:-66379755 | MS.gene20719:CDS |
AGATAGGATCGCACATGGGC+AGG | 0.523794 | 1.2:+66387487 | None:intergenic |
GTTAGAAGCAGGTGAAATCA+TGG | 0.524709 | 1.2:+66386595 | None:intergenic |
GGCTCTGCGAAGATGACCGT+GGG | 0.525867 | 1.2:-66384223 | MS.gene20719:CDS |
TTGGTACTGGTAGATGGTTG+TGG | 0.527288 | 1.2:-66384069 | MS.gene20719:CDS |
TTCTTGCTAGTGTTAGAAGC+AGG | 0.527488 | 1.2:+66386584 | None:intergenic |
TGCGATCCTATCTACACTGT+TGG | 0.528033 | 1.2:-66387477 | MS.gene20719:CDS |
TGGGCATCAACACTAGAAGC+TGG | 0.530453 | 1.2:+66385224 | None:intergenic |
CAACGTTGTCAGCATTCGCT+TGG | 0.533139 | 1.2:-66383096 | MS.gene20719:intron |
ATGTGGAGAAGATTATTGGC+TGG | 0.533396 | 1.2:-66382173 | MS.gene20719:CDS |
CCTTCTCTTTACGATTGTCC+GGG | 0.535959 | 1.2:+66383767 | None:intergenic |
CCTCCAAGATCATTTCCATC+TGG | 0.536452 | 1.2:+66384245 | None:intergenic |
TATCTTTAATCAACAACACT+AGG | 0.537312 | 1.2:+66383881 | None:intergenic |
TTGATTAAAGATATAGAGAA+GGG | 0.539386 | 1.2:-66383871 | MS.gene20719:CDS |
CATGTCTAGCATTACTTCGA+AGG | 0.539965 | 1.2:-66381303 | MS.gene20719:intron |
TCAGGAGAGAACCTCTGCAT+TGG | 0.540828 | 1.2:-66378071 | MS.gene20719:intron |
TGAGTTGCTTCATTACTTTG+GGG | 0.541759 | 1.2:+66383315 | None:intergenic |
TTGATCCACCTTCTCCATAG+AGG | 0.543836 | 1.2:+66377768 | None:intergenic |
AATTGTGCAGCATTCAGTAT+GGG | 0.544177 | 1.2:-66381946 | MS.gene20719:intron |
AACTTCCGTCGCTGTCCCCA+CGG | 0.544191 | 1.2:-66385798 | MS.gene20719:CDS |
ACCTCCACTTAAAATATGAC+GGG | 0.546727 | 1.2:+66387035 | None:intergenic |
CACCTCCACTTAAAATATGA+CGG | 0.548270 | 1.2:+66387034 | None:intergenic |
GCATTAGCAAATATGACTGA+TGG | 0.548831 | 1.2:-66379438 | MS.gene20719:CDS |
CTGCTACAGAGTCCAGGTAA+AGG | 0.549013 | 1.2:+66378037 | None:intergenic |
TGTGGAGAAGATTATTGGCT+GGG | 0.552790 | 1.2:-66382172 | MS.gene20719:CDS |
TTGATGAGGCTGTTATTAGG+AGG | 0.553766 | 1.2:-66379670 | MS.gene20719:CDS |
ATATGACCGAACTACTCCAA+TGG | 0.554821 | 1.2:-66377796 | MS.gene20719:CDS |
CATCTTTAAGGGACGAATGT+CGG | 0.555800 | 1.2:+66378012 | None:intergenic |
TCAATGTAATTTATGGCTGA+AGG | 0.556440 | 1.2:-66387445 | MS.gene20719:CDS |
CACAAAACATTACTAACAGA+GGG | 0.557214 | 1.2:+66387420 | None:intergenic |
CTAAAGAAATTCCAATTCCA+AGG | 0.558136 | 1.2:-66385316 | MS.gene20719:CDS |
TTTGAGAAATCAATTCCAGA+TGG | 0.558570 | 1.2:-66384260 | MS.gene20719:CDS |
CGACATTCGTCCCTTAAAGA+TGG | 0.560405 | 1.2:-66378011 | MS.gene20719:CDS |
TTGCATTGCTGGAAATCATA+GGG | 0.560439 | 1.2:-66387104 | MS.gene20719:CDS |
CCAATTACTACAACATTCTG+TGG | 0.561237 | 1.2:+66383802 | None:intergenic |
ATATTGTTATCTGGTCCTGC+AGG | 0.562546 | 1.2:-66385775 | MS.gene20719:intron |
GTACTGGTAGATGGTTGTGG+AGG | 0.563542 | 1.2:-66384066 | MS.gene20719:CDS |
AAGCAAGGAGAACTTTGCCC+CGG | 0.564745 | 1.2:+66384318 | None:intergenic |
CTTCGAAGTAATGCTAGACA+TGG | 0.564838 | 1.2:+66381304 | None:intergenic |
TGTGGTGATGAGGCAGCAGA+AGG | 0.565940 | 1.2:+66384950 | None:intergenic |
TGGATCCACATCTAGTTCAC+AGG | 0.566343 | 1.2:-66385192 | MS.gene20719:CDS |
CTGGTGTGGATGCAGATGTT+GGG | 0.567293 | 1.2:-66386376 | MS.gene20719:CDS |
GCTGGTGTGGATGCAGATGT+TGG | 0.569948 | 1.2:-66386377 | MS.gene20719:CDS |
AAGCTCCAGCAACAGACGAC+AGG | 0.571971 | 1.2:+66386657 | None:intergenic |
AGCAGCCGGAGTACTTCTCT+TGG | 0.573151 | 1.2:+66385271 | None:intergenic |
ATAATATGGGAAACTTTCAA+AGG | 0.575105 | 1.2:+66386124 | None:intergenic |
AATAATTCAGGCCTTTGAAG+AGG | 0.575146 | 1.2:+66381578 | None:intergenic |
GTTGATTAAAGATATAGAGA+AGG | 0.575175 | 1.2:-66383872 | MS.gene20719:CDS |
GGTGATCGGGTAAAATATGT+TGG | 0.577601 | 1.2:-66384980 | MS.gene20719:CDS |
AAGATCAAAAGGCCTGTTCG+TGG | 0.578120 | 1.2:+66379691 | None:intergenic |
AAAAGCAATATTCCCTTGCA+AGG | 0.581231 | 1.2:+66381404 | None:intergenic |
TTGGGGAGACGTGAAAATCC+TGG | 0.581561 | 1.2:-66379809 | MS.gene20719:CDS |
TTATACTTCCAGACCCAACC+TGG | 0.585606 | 1.2:-66383650 | MS.gene20719:intron |
TCGGCACTGCTACAGAGTCC+AGG | 0.586373 | 1.2:+66378031 | None:intergenic |
GAGTTGCTTCATTACTTTGG+GGG | 0.586847 | 1.2:+66383316 | None:intergenic |
TGTCCTGAATTTGATTTGAG+TGG | 0.587920 | 1.2:-66386296 | MS.gene20719:CDS |
TGGAAAGAGTCTCAAGTTCA+GGG | 0.588098 | 1.2:+66382312 | None:intergenic |
TGTATATGTATTGTAGCAGC+CGG | 0.588131 | 1.2:+66385257 | None:intergenic |
ATACTCCGGAAGTGACCTAA+AGG | 0.588550 | 1.2:-66379415 | MS.gene20719:intron |
AGTTACAATACAGATGCCTC+AGG | 0.592323 | 1.2:-66383273 | MS.gene20719:intron |
TCTCTTTACGATTGTCCGGG+TGG | 0.592849 | 1.2:+66383770 | None:intergenic |
TATTCCACCAACTGATATTG+GGG | 0.594319 | 1.2:-66381666 | MS.gene20719:CDS |
TGGAATGACCTCTATGGAGA+AGG | 0.595440 | 1.2:-66377776 | MS.gene20719:CDS |
ATCTTTAATCAACAACACTA+GGG | 0.596331 | 1.2:+66383882 | None:intergenic |
AATAAGGGAGATCTTGGAGA+AGG | 0.596378 | 1.2:-66379265 | MS.gene20719:CDS |
GCACAAAACATTACTAACAG+AGG | 0.596693 | 1.2:+66387419 | None:intergenic |
GAGACCCCAATATCAGTTGG+TGG | 0.597341 | 1.2:+66381662 | None:intergenic |
GGATCGCACATGGGCAGGTG+AGG | 0.600216 | 1.2:+66387492 | None:intergenic |
TACAGCCTGTGAACTAGATG+TGG | 0.602414 | 1.2:+66385187 | None:intergenic |
GGGCTCTGCGAAGATGACCG+TGG | 0.602812 | 1.2:-66384224 | MS.gene20719:CDS |
AATATGACTGATGGATACTC+CGG | 0.603542 | 1.2:-66379429 | MS.gene20719:CDS |
AACCTCTCTGCAGATATCAC+AGG | 0.603562 | 1.2:+66382096 | None:intergenic |
ATATAGAGAAGGGTGTGGCT+GGG | 0.603568 | 1.2:-66383861 | MS.gene20719:CDS |
ACTGAAGCAAGAAATTTCTA+CGG | 0.603821 | 1.2:-66385165 | MS.gene20719:CDS |
TTATTAGGAGGCTTCCGCGA+AGG | 0.604179 | 1.2:-66379658 | MS.gene20719:intron |
TGGGCTTCTAAAATGGTCAC+AGG | 0.606530 | 1.2:+66386725 | None:intergenic |
GAATTTGAGAAGAAACTGCT+TGG | 0.607693 | 1.2:-66381695 | MS.gene20719:CDS |
ATATCAGGAGACTCTGTCAA+AGG | 0.608833 | 1.2:-66385638 | MS.gene20719:CDS |
GACCAGATAACAATATCCGT+GGG | 0.611796 | 1.2:+66385782 | None:intergenic |
TCATTAACGGTGGTAGAGGA+CGG | 0.612113 | 1.2:+66386431 | None:intergenic |
CAGATGGAAATGATCTTGGA+GGG | 0.612382 | 1.2:-66384244 | MS.gene20719:CDS |
AATGAGACCCCAATATCAGT+TGG | 0.614901 | 1.2:+66381659 | None:intergenic |
GTTGCTGTAGAAGTCAATGC+TGG | 0.616908 | 1.2:-66386395 | MS.gene20719:CDS |
TAAAGATATAGAGAAGGGTG+TGG | 0.618571 | 1.2:-66383866 | MS.gene20719:CDS |
GGACCAAGTTATGGCTGCCG+GGG | 0.619591 | 1.2:-66384335 | MS.gene20719:CDS |
AATGACCTCTATGGAGAAGG+TGG | 0.620214 | 1.2:-66377773 | MS.gene20719:CDS |
GGACCAGATAACAATATCCG+TGG | 0.620245 | 1.2:+66385781 | None:intergenic |
CCCGGACAATCGTAAAGAGA+AGG | 0.621040 | 1.2:-66383767 | MS.gene20719:intron |
AATATCCGTGGGGACAGCGA+CGG | 0.621128 | 1.2:+66385793 | None:intergenic |
AAGTTAATGGAAAGATGTGT+GGG | 0.624767 | 1.2:-66387065 | MS.gene20719:CDS |
GGGCGATGTCAATAGTGTTG+GGG | 0.625948 | 1.2:+66386211 | None:intergenic |
GTTGATGCCCAAATTATAGG+TGG | 0.628751 | 1.2:-66385212 | MS.gene20719:CDS |
AAAGTTAATGGAAAGATGTG+TGG | 0.629427 | 1.2:-66387066 | MS.gene20719:CDS |
GGTGTGTGCAAGTGTGTCAT+CGG | 0.630593 | 1.2:-66377828 | MS.gene20719:CDS |
TACCAGAACAAAAGAACCCA+CGG | 0.633473 | 1.2:+66384207 | None:intergenic |
CAAGCGAATGCTGACAACGT+TGG | 0.636010 | 1.2:+66383097 | None:intergenic |
CTTGTTCTCAGCCAATGCAG+AGG | 0.640074 | 1.2:+66378060 | None:intergenic |
TGAAAATCCTGGTGAGCACG+AGG | 0.644939 | 1.2:-66379798 | MS.gene20719:CDS |
CTGGAAATCATAGGGAGTTG+TGG | 0.645621 | 1.2:-66387096 | MS.gene20719:CDS |
GTTTACCAAGAGAAGTACTC+CGG | 0.646811 | 1.2:-66385276 | MS.gene20719:CDS |
AGTGTAGATAGGATCGCACA+TGG | 0.649928 | 1.2:+66387482 | None:intergenic |
GGCAGGTTGATAGTATGTTG+GGG | 0.654910 | 1.2:-66379826 | MS.gene20719:intron |
ATTTGGATCTTCATTAACGG+TGG | 0.657754 | 1.2:+66386421 | None:intergenic |
TATGGGTTTAACATTCTACA+GGG | 0.665369 | 1.2:-66381929 | MS.gene20719:CDS |
GTGGTGATGAGGCAGCAGAA+GGG | 0.666844 | 1.2:+66384951 | None:intergenic |
TGTAATTCTGCACAGCATGG+AGG | 0.682821 | 1.2:-66387135 | MS.gene20719:intron |
TTGTTTAGGATAACTTTACG+AGG | 0.684403 | 1.2:-66383361 | MS.gene20719:intron |
CTTAGAAAACATACACCAGG+AGG | 0.693749 | 1.2:+66385565 | None:intergenic |
GTGTAGATAGGATCGCACAT+GGG | 0.698109 | 1.2:+66387483 | None:intergenic |
ATCACTACCTGCCAGCAATG+GGG | 0.702885 | 1.2:-66386537 | MS.gene20719:CDS |
AATTGGTTCACATATCCACC+CGG | 0.708734 | 1.2:-66383785 | MS.gene20719:CDS |
AGCCTGTGATATCTGCAGAG+AGG | 0.737849 | 1.2:-66382098 | MS.gene20719:intron |
TGTAGAAGTCAATGCTGGTG+TGG | 0.750767 | 1.2:-66386390 | MS.gene20719:CDS |
ACCAGATAACAATATCCGTG+GGG | 0.753414 | 1.2:+66385783 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 66377736 | 66388000 | 66377736 | ID=MS.gene20719 |
chr1.2 | mRNA | 66377736 | 66388000 | 66377736 | ID=MS.gene20719.t1;Parent=MS.gene20719 |
chr1.2 | exon | 66387961 | 66388000 | 66387961 | ID=MS.gene20719.t1.exon1;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66387961 | 66388000 | 66387961 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66387401 | 66387517 | 66387401 | ID=MS.gene20719.t1.exon2;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66387401 | 66387517 | 66387401 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66386996 | 66387142 | 66386996 | ID=MS.gene20719.t1.exon3;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66386996 | 66387142 | 66386996 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66386119 | 66386795 | 66386119 | ID=MS.gene20719.t1.exon4;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66386119 | 66386795 | 66386119 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66385776 | 66385897 | 66385776 | ID=MS.gene20719.t1.exon5;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66385776 | 66385897 | 66385776 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66385579 | 66385670 | 66385579 | ID=MS.gene20719.t1.exon6;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66385579 | 66385670 | 66385579 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66385135 | 66385366 | 66385135 | ID=MS.gene20719.t1.exon7;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66385135 | 66385366 | 66385135 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66384935 | 66385001 | 66384935 | ID=MS.gene20719.t1.exon8;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66384935 | 66385001 | 66384935 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66384210 | 66384358 | 66384210 | ID=MS.gene20719.t1.exon9;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66384210 | 66384358 | 66384210 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66384026 | 66384099 | 66384026 | ID=MS.gene20719.t1.exon10;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66384026 | 66384099 | 66384026 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66383768 | 66383932 | 66383768 | ID=MS.gene20719.t1.exon11;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66383768 | 66383932 | 66383768 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66383589 | 66383660 | 66383589 | ID=MS.gene20719.t1.exon12;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66383589 | 66383660 | 66383589 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66383274 | 66383375 | 66383274 | ID=MS.gene20719.t1.exon13;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66383274 | 66383375 | 66383274 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66383097 | 66383186 | 66383097 | ID=MS.gene20719.t1.exon14;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66383097 | 66383186 | 66383097 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66382285 | 66382360 | 66382285 | ID=MS.gene20719.t1.exon15;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66382285 | 66382360 | 66382285 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66382099 | 66382195 | 66382099 | ID=MS.gene20719.t1.exon16;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66382099 | 66382195 | 66382099 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66381889 | 66381958 | 66381889 | ID=MS.gene20719.t1.exon17;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66381889 | 66381958 | 66381889 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66381556 | 66381735 | 66381556 | ID=MS.gene20719.t1.exon18;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66381556 | 66381735 | 66381556 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66381304 | 66381426 | 66381304 | ID=MS.gene20719.t1.exon19;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66381304 | 66381426 | 66381304 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66381129 | 66381212 | 66381129 | ID=MS.gene20719.t1.exon20;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66381129 | 66381212 | 66381129 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66379659 | 66379843 | 66379659 | ID=MS.gene20719.t1.exon21;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66379659 | 66379843 | 66379659 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66379416 | 66379554 | 66379416 | ID=MS.gene20719.t1.exon22;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66379416 | 66379554 | 66379416 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66379257 | 66379316 | 66379257 | ID=MS.gene20719.t1.exon23;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66379257 | 66379316 | 66379257 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66377985 | 66378089 | 66377985 | ID=MS.gene20719.t1.exon24;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66377985 | 66378089 | 66377985 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
chr1.2 | exon | 66377736 | 66377849 | 66377736 | ID=MS.gene20719.t1.exon25;Parent=MS.gene20719.t1 |
chr1.2 | CDS | 66377736 | 66377849 | 66377736 | ID=cds.MS.gene20719.t1;Parent=MS.gene20719.t1 |
Gene Sequence |
Protein sequence |