Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20781.t1 | XP_024639356.1 | 99.6 | 562 | 2 | 0 | 1 | 562 | 1 | 562 | 0.00E+00 | 1120.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20781.t1 | Q54V77 | 61.2 | 569 | 201 | 7 | 1 | 551 | 1 | 567 | 2.0e-196 | 686.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20781.t1 | G7IDT8 | 99.6 | 562 | 2 | 0 | 1 | 562 | 1 | 562 | 0.0e+00 | 1120.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20781 | MS.gene95693 | PPI |
| MS.gene20781 | MS.gene93045 | PPI |
| MS.gene008780 | MS.gene20781 | PPI |
| MS.gene20781 | MS.gene056502 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20781.t1 | MTR_1g087440 | 99.644 | 562 | 2 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1154 |
| MS.gene20781.t1 | MTR_1g087440 | 99.571 | 466 | 2 | 0 | 1 | 466 | 1 | 466 | 0.0 | 955 |
| MS.gene20781.t1 | MTR_8g446910 | 71.404 | 570 | 155 | 2 | 1 | 562 | 1 | 570 | 0.0 | 855 |
| MS.gene20781.t1 | MTR_2g062770 | 72.894 | 546 | 148 | 0 | 1 | 546 | 1 | 546 | 0.0 | 841 |
| MS.gene20781.t1 | MTR_8g070540 | 71.196 | 552 | 159 | 0 | 1 | 552 | 1 | 552 | 0.0 | 835 |
| MS.gene20781.t1 | MTR_2g062770 | 71.429 | 497 | 142 | 0 | 50 | 546 | 1 | 497 | 0.0 | 754 |
| MS.gene20781.t1 | MTR_8g070540 | 71.636 | 483 | 137 | 0 | 1 | 483 | 1 | 483 | 0.0 | 728 |
| MS.gene20781.t1 | MTR_8g070540 | 68.211 | 475 | 151 | 0 | 78 | 552 | 1 | 475 | 0.0 | 692 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20781.t1 | AT4G02120 | 83.813 | 556 | 90 | 0 | 1 | 556 | 1 | 556 | 0.0 | 981 |
| MS.gene20781.t1 | AT4G02120 | 80.623 | 578 | 90 | 1 | 1 | 556 | 1 | 578 | 0.0 | 971 |
| MS.gene20781.t1 | AT4G02120 | 79.137 | 556 | 77 | 1 | 1 | 556 | 1 | 517 | 0.0 | 905 |
| MS.gene20781.t1 | AT4G02120 | 86.570 | 484 | 65 | 0 | 1 | 484 | 1 | 484 | 0.0 | 875 |
| MS.gene20781.t1 | AT3G12670 | 73.732 | 552 | 144 | 1 | 1 | 552 | 1 | 551 | 0.0 | 846 |
| MS.gene20781.t1 | AT4G02120 | 86.910 | 466 | 61 | 0 | 1 | 466 | 1 | 466 | 0.0 | 843 |
| MS.gene20781.t1 | AT1G30820 | 70.780 | 551 | 161 | 0 | 1 | 551 | 1 | 551 | 0.0 | 833 |
| MS.gene20781.t1 | AT4G20320 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| MS.gene20781.t1 | AT4G20320 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| MS.gene20781.t1 | AT4G20320 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| MS.gene20781.t1 | AT4G20320 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| MS.gene20781.t1 | AT4G20320 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| MS.gene20781.t1 | AT2G34890 | 65.480 | 562 | 192 | 1 | 1 | 560 | 1 | 562 | 0.0 | 785 |
| MS.gene20781.t1 | AT4G20320 | 68.526 | 502 | 158 | 0 | 50 | 551 | 1 | 502 | 0.0 | 738 |
Find 153 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATGATGTACCAAATATT+TGG | 0.205073 | 1.2:+65751290 | MS.gene20781:CDS |
| ATTGTTCTCTCTGGCATATT+TGG | 0.242741 | 1.2:-65753574 | None:intergenic |
| TTTATAGGTTGATTTGGATT+TGG | 0.257444 | 1.2:+65748073 | MS.gene20781:intron |
| TTATAGGTTGATTTGGATTT+GGG | 0.261073 | 1.2:+65748074 | MS.gene20781:intron |
| GCAGCTTGTGTCTTGGTTCC+AGG | 0.262807 | 1.2:+65753510 | MS.gene20781:CDS |
| CATGCTGCGGCATGTGCTTC+TGG | 0.277150 | 1.2:-65752914 | None:intergenic |
| GTCTTGGTTCCAGGAGGATT+TGG | 0.288037 | 1.2:+65753519 | MS.gene20781:CDS |
| AGGGGAATATGCCAAATATT+TGG | 0.292011 | 1.2:-65751301 | None:intergenic |
| ATGAAAATTACAACAGGATT+TGG | 0.292322 | 1.2:-65753791 | None:intergenic |
| TTACAACAGGATTTGGTGTT+TGG | 0.292770 | 1.2:-65753784 | None:intergenic |
| AATTGCACGCCTACATAATA+TGG | 0.299023 | 1.2:-65755658 | None:intergenic |
| CTAGTCATAAACAGGGTTCT+AGG | 0.329918 | 1.2:+65753884 | MS.gene20781:intron |
| AGAGACTCACTCTAAGTAAC+AGG | 0.332129 | 1.2:-65751321 | None:intergenic |
| GGGTCTTCATTTCCATCAAC+CGG | 0.349986 | 1.2:-65748490 | None:intergenic |
| GGCGGAGTCGTTAGCGGCCT+CGG | 0.350600 | 1.2:+65747696 | MS.gene20781:CDS |
| AGCCGACACAACACAGTGTC+AGG | 0.360915 | 1.2:+65750105 | MS.gene20781:CDS |
| CCTTACTTGGGGATTTGCTT+GGG | 0.363800 | 1.2:+65753600 | MS.gene20781:CDS |
| CCAGGCCGAGATTTGAATTC+GGG | 0.365733 | 1.2:-65755685 | None:intergenic |
| TACAACAGGATTTGGTGTTT+GGG | 0.372108 | 1.2:-65753783 | None:intergenic |
| TCCTTACTTGGGGATTTGCT+TGG | 0.377880 | 1.2:+65753599 | MS.gene20781:CDS |
| CCCAGGCCGAGATTTGAATT+CGG | 0.381611 | 1.2:-65755686 | None:intergenic |
| CTACACCCAACACTGGTATC+AGG | 0.389842 | 1.2:-65749982 | None:intergenic |
| TACTACTGGGAAAATATATC+AGG | 0.394580 | 1.2:+65748145 | MS.gene20781:CDS |
| ATTGAAACTTTAGAAGAAGC+TGG | 0.397254 | 1.2:+65755374 | MS.gene20781:CDS |
| CGCGGAGGCCGCAGGCTTTG+AGG | 0.401516 | 1.2:-65747752 | None:intergenic |
| ATTCAATGTGCAGCCTCTGC+TGG | 0.411306 | 1.2:+65751116 | MS.gene20781:intron |
| AGAGAACAATGTTCCTTACT+TGG | 0.411823 | 1.2:+65753587 | MS.gene20781:CDS |
| GGTCTCATATTGGCGGCAAC+GGG | 0.413570 | 1.2:+65756078 | MS.gene20781:intron |
| TCACCGATGCAATCAGAAAC+TGG | 0.416127 | 1.2:+65748446 | MS.gene20781:CDS |
| TCAGTCCATTGCCGCAAATC+AGG | 0.416330 | 1.2:-65752120 | None:intergenic |
| TTTGCGGCAATGGACTGATA+TGG | 0.421515 | 1.2:+65752125 | MS.gene20781:CDS |
| AAGGATAATAATATTACTAC+TGG | 0.423934 | 1.2:+65748131 | MS.gene20781:CDS |
| GCTGCAATCCAGTCAATTGA+TGG | 0.432899 | 1.2:-65752756 | None:intergenic |
| CGCGTCACCTCCATCAAAAT+CGG | 0.434250 | 1.2:+65747771 | MS.gene20781:CDS |
| TTCATATTTATCTGTTGTAA+AGG | 0.435122 | 1.2:+65752307 | MS.gene20781:CDS |
| CACCTCCTGATTTGCGGCAA+TGG | 0.440971 | 1.2:+65752115 | MS.gene20781:CDS |
| CTGGGCTAAAATTTGTTGGC+AGG | 0.443903 | 1.2:+65755393 | MS.gene20781:CDS |
| TGCCGTAGAGCCTCAATAAA+CGG | 0.445911 | 1.2:-65748672 | None:intergenic |
| ATGAAGTACGTTCTCATCTC+CGG | 0.446260 | 1.2:+65747675 | MS.gene20781:CDS |
| TGACATTGTTCAGGTAAATC+CGG | 0.446706 | 1.2:+65755346 | MS.gene20781:intron |
| GTTGCTGTGATCCCGGTTGA+TGG | 0.447710 | 1.2:+65748478 | MS.gene20781:CDS |
| GATGTTTGTGTGATTGAGCT+TGG | 0.449727 | 1.2:+65748517 | MS.gene20781:CDS |
| GAGGACGACGCCGATGCTGC+TGG | 0.450311 | 1.2:-65747733 | None:intergenic |
| GAGAACAATGTTCCTTACTT+GGG | 0.452256 | 1.2:+65753588 | MS.gene20781:CDS |
| ATTGTGCACTGTCATCTTCA+AGG | 0.452441 | 1.2:-65752785 | None:intergenic |
| AATTACCAGGTATGGCAATT+CGG | 0.452917 | 1.2:+65755212 | MS.gene20781:intron |
| GCAGAGTGCAGCTTGTGTCT+TGG | 0.454760 | 1.2:+65753503 | MS.gene20781:intron |
| ATTGGCGGCAACGGGGAAGT+TGG | 0.454817 | 1.2:+65756086 | MS.gene20781:CDS |
| GATACCAGTGTTGGGTGTAG+TGG | 0.458939 | 1.2:+65749985 | MS.gene20781:CDS |
| TCTAAAGTTTCAATAACATC+CGG | 0.459751 | 1.2:-65755365 | None:intergenic |
| GTCGTTAGCGGCCTCGGCAA+AGG | 0.462544 | 1.2:+65747702 | MS.gene20781:CDS |
| AAAACTTCTCCATGTTCAAA+AGG | 0.464491 | 1.2:-65747912 | None:intergenic |
| GTCAGGGAACTAAGAGCATT+GGG | 0.465525 | 1.2:+65750122 | MS.gene20781:CDS |
| CCCGAATTCAAATCTCGGCC+TGG | 0.467639 | 1.2:+65755685 | MS.gene20781:CDS |
| ATCACTAGCATTCATGAGAA+TGG | 0.472024 | 1.2:+65756117 | MS.gene20781:CDS |
| GAAGCTGGGCTAAAATTTGT+TGG | 0.472530 | 1.2:+65755389 | MS.gene20781:CDS |
| CATTGAGACCATCAATTGAC+TGG | 0.472847 | 1.2:+65752748 | MS.gene20781:CDS |
| ATACCAGTGTTGGGTGTAGT+GGG | 0.477063 | 1.2:+65749986 | MS.gene20781:CDS |
| GTAAGGAACATTGTTCTCTC+TGG | 0.480928 | 1.2:-65753583 | None:intergenic |
| GGAGGTGACGCGGAGGCCGC+AGG | 0.484019 | 1.2:-65747760 | None:intergenic |
| AACAAAGCAGATGGTCTCCC+AGG | 0.484640 | 1.2:-65755703 | None:intergenic |
| CTATACTGTAGGTCTCATAT+TGG | 0.486234 | 1.2:+65756068 | MS.gene20781:intron |
| GGCGTCACCGCCAGCAGCAT+CGG | 0.487935 | 1.2:+65747723 | MS.gene20781:CDS |
| TCAATCACACAAACATCAGC+AGG | 0.489125 | 1.2:-65748511 | None:intergenic |
| CCTACATAATATGGATGACT+TGG | 0.496534 | 1.2:-65755649 | None:intergenic |
| CCCAAGCAAATCCCCAAGTA+AGG | 0.496781 | 1.2:-65753600 | None:intergenic |
| TACAGCAGCTTAACTTACTT+AGG | 0.505369 | 1.2:+65751452 | MS.gene20781:CDS |
| CCGAATTCAAATCTCGGCCT+GGG | 0.505440 | 1.2:+65755686 | MS.gene20781:CDS |
| AGGTCTCATATTGGCGGCAA+CGG | 0.505545 | 1.2:+65756077 | MS.gene20781:intron |
| TTGAAACTTTAGAAGAAGCT+GGG | 0.507446 | 1.2:+65755375 | MS.gene20781:CDS |
| TGGATGAGACAGAAGTTGTC+AGG | 0.508265 | 1.2:-65749953 | None:intergenic |
| TCCTTGGTACTTTCCAGCAG+AGG | 0.508640 | 1.2:-65751129 | None:intergenic |
| TCTGGCATGAAAATTACAAC+AGG | 0.511552 | 1.2:-65753797 | None:intergenic |
| TACTGTAGGTCTCATATTGG+CGG | 0.513078 | 1.2:+65756071 | MS.gene20781:intron |
| TGTCAGGGAACTAAGAGCAT+TGG | 0.513673 | 1.2:+65750121 | MS.gene20781:CDS |
| TGCCGTTTATTGAGGCTCTA+CGG | 0.516145 | 1.2:+65748670 | MS.gene20781:CDS |
| TTCTTAGTCTGTGCTTGAGA+AGG | 0.517567 | 1.2:+65748255 | MS.gene20781:intron |
| TTCATCCCGAATTCAAATCT+CGG | 0.519745 | 1.2:+65755680 | MS.gene20781:CDS |
| GTATGGCAATTCGGAGTATG+TGG | 0.526581 | 1.2:+65755221 | MS.gene20781:CDS |
| CCAGCGTCAATGTTCAAATA+CGG | 0.527929 | 1.2:-65747879 | None:intergenic |
| TGTTAGCCTGATACCAGTGT+TGG | 0.528405 | 1.2:+65749976 | MS.gene20781:CDS |
| ACCAGTGTTGGGTGTAGTGG+GGG | 0.530013 | 1.2:+65749988 | MS.gene20781:CDS |
| CCAAGTCATCCATATTATGT+AGG | 0.530338 | 1.2:+65755649 | MS.gene20781:CDS |
| GGATGAAAGCGGAAGACGAA+TGG | 0.530600 | 1.2:+65755415 | MS.gene20781:CDS |
| GTGCAACACAAGCATGCAGT+AGG | 0.531316 | 1.2:-65752722 | None:intergenic |
| TGAGTCTATGCCGTTTATTG+AGG | 0.534928 | 1.2:+65748662 | MS.gene20781:CDS |
| CCACGATCTCCAAATCCTCC+TGG | 0.535514 | 1.2:-65753528 | None:intergenic |
| TGAGTCGGTTGCTGTGATCC+CGG | 0.538290 | 1.2:+65748471 | MS.gene20781:CDS |
| ATCTCCGGCGGAGTCGTTAG+CGG | 0.542697 | 1.2:+65747690 | MS.gene20781:CDS |
| GTTTGTGTGATTGAGCTTGG+AGG | 0.545170 | 1.2:+65748520 | MS.gene20781:CDS |
| GTGCTACACCTCCTGATTTG+CGG | 0.545667 | 1.2:+65752109 | MS.gene20781:CDS |
| TCCCTGACACTGTGTTGTGT+CGG | 0.548570 | 1.2:-65750107 | None:intergenic |
| TTTGGAGATCGTGGTGTGAG+AGG | 0.552633 | 1.2:+65753537 | MS.gene20781:CDS |
| GTTAGCCTGATACCAGTGTT+GGG | 0.554596 | 1.2:+65749977 | MS.gene20781:CDS |
| TCTTGATGTTACACTTACAA+AGG | 0.556810 | 1.2:+65748112 | MS.gene20781:CDS |
| AGAACAATGTTCCTTACTTG+GGG | 0.557436 | 1.2:+65753589 | MS.gene20781:CDS |
| TGGGCTAAAATTTGTTGGCA+GGG | 0.558448 | 1.2:+65755394 | MS.gene20781:CDS |
| TGCTGTCATACCCACTTGAA+AGG | 0.561108 | 1.2:-65748700 | None:intergenic |
| TACCAGTGTTGGGTGTAGTG+GGG | 0.563851 | 1.2:+65749987 | MS.gene20781:CDS |
| ACACTGGTATCAGGCTAACA+TGG | 0.566475 | 1.2:-65749973 | None:intergenic |
| TGTGCTTGAGAAGGAGCGCA+AGG | 0.569431 | 1.2:+65748264 | MS.gene20781:CDS |
| CCAGGAGGATTTGGAGATCG+TGG | 0.581850 | 1.2:+65753528 | MS.gene20781:CDS |
| AATCCAGTTTCTGATTGCAT+CGG | 0.583198 | 1.2:-65748449 | None:intergenic |
| GAGCGCAAGGGAGATTATCT+CGG | 0.583903 | 1.2:+65748277 | MS.gene20781:CDS |
| CAGGTTAGGATTGCCATGGT+GGG | 0.589890 | 1.2:+65752263 | MS.gene20781:intron |
| ATGGGAAGTACCATGAGACT+TGG | 0.591140 | 1.2:+65753913 | MS.gene20781:CDS |
| TCCATGTTCAAAAGGAGACA+TGG | 0.591963 | 1.2:-65747904 | None:intergenic |
| GCAAATCAGGAGGTGTAGCA+CGG | 0.592136 | 1.2:-65752107 | None:intergenic |
| TTTACAGGTTAGGATTGCCA+TGG | 0.595375 | 1.2:+65752259 | MS.gene20781:intron |
| TGCAACACAAGCATGCAGTA+GGG | 0.596048 | 1.2:-65752721 | None:intergenic |
| ATTGAGCTTGGAGGCACTGT+GGG | 0.598258 | 1.2:+65748529 | MS.gene20781:CDS |
| TGGCGGTGACGCCTTTGCCG+AGG | 0.599015 | 1.2:-65747713 | None:intergenic |
| ACAGGTTAGGATTGCCATGG+TGG | 0.599284 | 1.2:+65752262 | MS.gene20781:intron |
| ACGGCAATTATCCTTTCAAG+TGG | 0.601495 | 1.2:+65748689 | MS.gene20781:CDS |
| CAGAAGCACATGCCGCAGCA+TGG | 0.601979 | 1.2:+65752915 | MS.gene20781:CDS |
| GAGGCCGCTAACGACTCCGC+CGG | 0.602079 | 1.2:-65747694 | None:intergenic |
| TTTAGCAAGTCGCTCTGCTG+AGG | 0.603158 | 1.2:+65750160 | MS.gene20781:CDS |
| ACTGAAAACTTACTGGAACA+TGG | 0.606549 | 1.2:-65751170 | None:intergenic |
| CTTCAGAGTCTTCCATGCTG+CGG | 0.607051 | 1.2:-65752927 | None:intergenic |
| CTGCTGTAAAATTGAGTGGT+GGG | 0.610647 | 1.2:-65751437 | None:intergenic |
| CTGATTGCATCGGTGATATG+CGG | 0.611112 | 1.2:-65748439 | None:intergenic |
| ATTCGGAGTATGTGGATGAA+CGG | 0.613690 | 1.2:+65755229 | MS.gene20781:CDS |
| GAGCGACTTGCTAAAAGATG+AGG | 0.613956 | 1.2:-65750152 | None:intergenic |
| GCTTGTGTCTTGGTTCCAGG+AGG | 0.614810 | 1.2:+65753513 | MS.gene20781:CDS |
| GGTCTTCATTTCCATCAACC+GGG | 0.617073 | 1.2:-65748489 | None:intergenic |
| TCTTCGAGATCCAAGTCTCA+TGG | 0.624956 | 1.2:-65753923 | None:intergenic |
| TGAAAGCGGAAGACGAATGG+AGG | 0.626991 | 1.2:+65755418 | MS.gene20781:CDS |
| GCCATGGTGGGAAAATATGT+TGG | 0.628848 | 1.2:+65752275 | MS.gene20781:CDS |
| GTCCATTGCCGCAAATCAGG+AGG | 0.628942 | 1.2:-65752117 | None:intergenic |
| CGGCAATTATCCTTTCAAGT+GGG | 0.631841 | 1.2:+65748690 | MS.gene20781:CDS |
| GCCGACACAACACAGTGTCA+GGG | 0.640779 | 1.2:+65750106 | MS.gene20781:CDS |
| GCCTCTGCTGGAAAGTACCA+AGG | 0.645176 | 1.2:+65751128 | MS.gene20781:intron |
| ACAGGGTTCTAGGACTCACA+TGG | 0.646100 | 1.2:+65753894 | MS.gene20781:intron |
| GAGACTCACTCTAAGTAACA+GGG | 0.646615 | 1.2:-65751320 | None:intergenic |
| TGTTCTTGATGATGGCGGAG+AGG | 0.649503 | 1.2:+65747935 | MS.gene20781:CDS |
| GATTGAGCTTGGAGGCACTG+TGG | 0.652060 | 1.2:+65748528 | MS.gene20781:CDS |
| CGCAGCATGGAAGACTCTGA+AGG | 0.652129 | 1.2:+65752928 | MS.gene20781:CDS |
| GTGCTTGAGAAGGAGCGCAA+GGG | 0.658499 | 1.2:+65748265 | MS.gene20781:CDS |
| CCGTATTTGAACATTGACGC+TGG | 0.659655 | 1.2:+65747879 | MS.gene20781:CDS |
| AATCAGAAACTGGATTGAGT+CGG | 0.661872 | 1.2:+65748456 | MS.gene20781:CDS |
| GCTGCTGTAAAATTGAGTGG+TGG | 0.662926 | 1.2:-65751438 | None:intergenic |
| TTTGTTGGCAGGGATGAAAG+CGG | 0.667172 | 1.2:+65755404 | MS.gene20781:CDS |
| AGGATAATAATATTACTACT+GGG | 0.667804 | 1.2:+65748132 | MS.gene20781:CDS |
| TAAGCTGCTGTAAAATTGAG+TGG | 0.672139 | 1.2:-65751441 | None:intergenic |
| AAGTACGTTCTCATCTCCGG+CGG | 0.674090 | 1.2:+65747678 | MS.gene20781:CDS |
| GTCTCATATTGGCGGCAACG+GGG | 0.674517 | 1.2:+65756079 | MS.gene20781:CDS |
| GACGACGCCGATGCTGCTGG+CGG | 0.688026 | 1.2:-65747730 | None:intergenic |
| GGCGTCGTCCTCAAAGCCTG+CGG | 0.692971 | 1.2:+65747744 | MS.gene20781:CDS |
| CAATCACACAAACATCAGCA+GGG | 0.701082 | 1.2:-65748510 | None:intergenic |
| AGACTCACTCTAAGTAACAG+GGG | 0.704240 | 1.2:-65751319 | None:intergenic |
| CAGGGTTCTAGGACTCACAT+GGG | 0.704702 | 1.2:+65753895 | MS.gene20781:intron |
| TAGTACTAACAGATTCAGTG+AGG | 0.746597 | 1.2:-65752164 | None:intergenic |
| ACGGCATCGTCATAGATACG+AGG | 0.761487 | 1.2:+65755248 | MS.gene20781:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 65747675 | 65756146 | 65747675 | ID=MS.gene20781 |
| chr1.2 | mRNA | 65747675 | 65756146 | 65747675 | ID=MS.gene20781.t1;Parent=MS.gene20781 |
| chr1.2 | exon | 65747675 | 65747792 | 65747675 | ID=MS.gene20781.t1.exon1;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65747675 | 65747792 | 65747675 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65747877 | 65747956 | 65747877 | ID=MS.gene20781.t1.exon2;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65747877 | 65747956 | 65747877 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65748080 | 65748166 | 65748080 | ID=MS.gene20781.t1.exon3;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65748080 | 65748166 | 65748080 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65748262 | 65748312 | 65748262 | ID=MS.gene20781.t1.exon4;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65748262 | 65748312 | 65748262 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65748433 | 65748550 | 65748433 | ID=MS.gene20781.t1.exon5;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65748433 | 65748550 | 65748433 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65748655 | 65748711 | 65748655 | ID=MS.gene20781.t1.exon6;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65748655 | 65748711 | 65748655 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65749951 | 65750015 | 65749951 | ID=MS.gene20781.t1.exon7;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65749951 | 65750015 | 65749951 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65750098 | 65750181 | 65750098 | ID=MS.gene20781.t1.exon8;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65750098 | 65750181 | 65750098 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65751129 | 65751179 | 65751129 | ID=MS.gene20781.t1.exon9;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65751129 | 65751179 | 65751129 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65751271 | 65751333 | 65751271 | ID=MS.gene20781.t1.exon10;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65751271 | 65751333 | 65751271 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65751427 | 65751473 | 65751427 | ID=MS.gene20781.t1.exon11;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65751427 | 65751473 | 65751427 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65752107 | 65752176 | 65752107 | ID=MS.gene20781.t1.exon12;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65752107 | 65752176 | 65752107 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65752266 | 65752328 | 65752266 | ID=MS.gene20781.t1.exon13;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65752266 | 65752328 | 65752266 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65752720 | 65752809 | 65752720 | ID=MS.gene20781.t1.exon14;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65752720 | 65752809 | 65752720 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65752911 | 65752949 | 65752911 | ID=MS.gene20781.t1.exon15;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65752911 | 65752949 | 65752911 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65753507 | 65753656 | 65753507 | ID=MS.gene20781.t1.exon16;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65753507 | 65753656 | 65753507 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65753743 | 65753820 | 65753743 | ID=MS.gene20781.t1.exon17;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65753743 | 65753820 | 65753743 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65753898 | 65753983 | 65753898 | ID=MS.gene20781.t1.exon18;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65753898 | 65753983 | 65753898 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65755221 | 65755269 | 65755221 | ID=MS.gene20781.t1.exon19;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65755221 | 65755269 | 65755221 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65755359 | 65755439 | 65755359 | ID=MS.gene20781.t1.exon20;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65755359 | 65755439 | 65755359 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65755637 | 65755730 | 65755637 | ID=MS.gene20781.t1.exon21;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65755637 | 65755730 | 65755637 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| chr1.2 | exon | 65756079 | 65756146 | 65756079 | ID=MS.gene20781.t1.exon22;Parent=MS.gene20781.t1 |
| chr1.2 | CDS | 65756079 | 65756146 | 65756079 | ID=cds.MS.gene20781.t1;Parent=MS.gene20781.t1 |
| Gene Sequence |
| Protein sequence |
