Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20811.t1 | XP_003591393.1 | 98.3 | 296 | 5 | 0 | 1 | 296 | 1 | 296 | 5.10E-158 | 567 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20811.t1 | G7ICX3 | 98.3 | 296 | 5 | 0 | 1 | 296 | 1 | 296 | 3.7e-158 | 567.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene061044 | MS.gene20811 | 0.823604 | 1.27E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20811.t1 | MTR_1g086950 | 98.311 | 296 | 5 | 0 | 1 | 296 | 1 | 296 | 0.0 | 591 |
MS.gene20811.t1 | MTR_7g109590 | 51.768 | 311 | 122 | 7 | 1 | 295 | 1 | 299 | 4.59e-89 | 268 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20811.t1 | AT2G47360 | 42.553 | 235 | 100 | 6 | 63 | 278 | 63 | 281 | 1.28e-50 | 169 |
MS.gene20811.t1 | AT1G02570 | 38.559 | 236 | 129 | 5 | 64 | 296 | 56 | 278 | 8.67e-44 | 150 |
MS.gene20811.t1 | AT1G02575 | 37.755 | 196 | 102 | 8 | 75 | 267 | 67 | 245 | 3.12e-31 | 118 |
Find 76 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAGAGGAAGTTGAGAATTT+AGG | 0.190418 | 1.2:-65375849 | MS.gene20811:CDS |
TACATGAAACAACACAAATT+TGG | 0.272884 | 1.2:-65375995 | MS.gene20811:CDS |
TTTCAAATATGTGTTGGTTT+AGG | 0.275769 | 1.2:-65376137 | MS.gene20811:CDS |
ATAGTTGAAGAAGAAATCTT+TGG | 0.285743 | 1.2:+65376487 | None:intergenic |
ATGGATTTGAAGGTAGAATT+TGG | 0.286827 | 1.2:+65376361 | None:intergenic |
GACGATGGTTCTAGTAGTTT+TGG | 0.302357 | 1.2:-65376062 | MS.gene20811:CDS |
AGTTGAGAATTTAGGTGTTA+TGG | 0.309415 | 1.2:-65375841 | MS.gene20811:CDS |
ACAGATTAATGAGGTGGAAT+TGG | 0.353558 | 1.2:-65375667 | MS.gene20811:CDS |
TACTTTGATCAATGGTTTGA+TGG | 0.354298 | 1.2:-65376249 | MS.gene20811:CDS |
GCTAAGAGAAGAAAAGATAG+AGG | 0.357745 | 1.2:+65376398 | None:intergenic |
GTCTTTACATGTCATGGAAA+TGG | 0.358547 | 1.2:-65376175 | MS.gene20811:CDS |
GAGATTATGGATTGAGAAAG+TGG | 0.371004 | 1.2:-65375913 | MS.gene20811:CDS |
CTTCTCTTAGCTAGTCTCTC+TGG | 0.372938 | 1.2:-65376386 | MS.gene20811:CDS |
GTGGTTGTGGCAGGTAGTTT+AGG | 0.376947 | 1.2:-65375894 | MS.gene20811:CDS |
ATGACATGTAAAGACGAGTT+TGG | 0.390360 | 1.2:+65376183 | None:intergenic |
GGTATGGTGAGGATTGTTAA+AGG | 0.394274 | 1.2:-65375735 | MS.gene20811:CDS |
AAAAGAGAAAAGATAAGGTA+AGG | 0.399838 | 1.2:+65376328 | None:intergenic |
AGGAGGTGGAAGATCCTTGC+AGG | 0.405724 | 1.2:+65376449 | None:intergenic |
TATTATCTAATTGTCACAAT+TGG | 0.405785 | 1.2:-65375756 | MS.gene20811:CDS |
AAGGTAAGGGTTGTTGTGAA+TGG | 0.409710 | 1.2:+65376342 | None:intergenic |
AGTGTAGCTACTTTGATCAA+TGG | 0.424175 | 1.2:-65376257 | MS.gene20811:CDS |
AGTTTGGAGAAGAATAGAAT+TGG | 0.429200 | 1.2:+65376199 | None:intergenic |
GAAAAGATAGAGGGAGGAGA+AGG | 0.430845 | 1.2:+65376408 | None:intergenic |
AAGCAGAATGATATTTCTGT+TGG | 0.438907 | 1.2:-65376021 | MS.gene20811:CDS |
GTGGGAATAGAAGAATTTGT+TGG | 0.445922 | 1.2:-65375789 | MS.gene20811:CDS |
TGATTTCTCTATGTAGAAGA+AGG | 0.454333 | 1.2:-65375695 | MS.gene20811:CDS |
GGATTGTTAAAGGTCTTATG+TGG | 0.482472 | 1.2:-65375725 | MS.gene20811:CDS |
AATTGGATGAATCATTCATA+AGG | 0.483645 | 1.2:+65376216 | None:intergenic |
AACAAAGAAAGATGAAATGA+TGG | 0.484417 | 1.2:-65375814 | MS.gene20811:CDS |
AAAAGATAGAGGGAGGAGAA+GGG | 0.494482 | 1.2:+65376409 | None:intergenic |
GTTGTTGTGAATGGATTTGA+AGG | 0.496977 | 1.2:+65376351 | None:intergenic |
GTTTAGGAACATTGTGGTGG+TGG | 0.497414 | 1.2:-65375878 | MS.gene20811:CDS |
ATGGATTGAGAAAGTGGTTG+TGG | 0.498685 | 1.2:-65375907 | MS.gene20811:CDS |
TCATTCTACACAAAATGGAT+TGG | 0.502402 | 1.2:-65376520 | None:intergenic |
TCTAATTGTCACAATTGGTA+TGG | 0.503683 | 1.2:-65375751 | MS.gene20811:CDS |
GAAAGATGAAATGATGGAGG+TGG | 0.504281 | 1.2:-65375808 | MS.gene20811:CDS |
GGATAGTGATGGTGAGGAGG+TGG | 0.504511 | 1.2:+65376435 | None:intergenic |
ACTTTGATCAATGGTTTGAT+GGG | 0.504932 | 1.2:-65376248 | MS.gene20811:CDS |
GGGTGAGGATAGTGATGGTG+AGG | 0.507453 | 1.2:+65376429 | None:intergenic |
GTGGTGGATGACACTATATT+TGG | 0.509880 | 1.2:-65375951 | MS.gene20811:CDS |
AAAGAGAAAAGATAAGGTAA+GGG | 0.510747 | 1.2:+65376329 | None:intergenic |
AGCAGAATGATATTTCTGTT+GGG | 0.516467 | 1.2:-65376020 | MS.gene20811:CDS |
ATAGAGGGAGGAGAAGGGTG+AGG | 0.523270 | 1.2:+65376414 | None:intergenic |
TGAGGATAGTGATGGTGAGG+AGG | 0.526694 | 1.2:+65376432 | None:intergenic |
ACAAGAACATAGAGAATACA+TGG | 0.527333 | 1.2:+65376290 | None:intergenic |
TAGAAGAATTTGTTGGATGG+TGG | 0.527444 | 1.2:-65375782 | MS.gene20811:CDS |
AAACTCGTCTTTACATGTCA+TGG | 0.528069 | 1.2:-65376181 | MS.gene20811:CDS |
ATAGCAAAAGAGAAAAGATA+AGG | 0.540841 | 1.2:+65376323 | None:intergenic |
GATGACACTATATTTGGTGT+TGG | 0.542896 | 1.2:-65375945 | MS.gene20811:CDS |
ATTGAAGCAAGCATTGCAGC+TGG | 0.549729 | 1.2:-65376113 | MS.gene20811:CDS |
AAAGATGAAATGATGGAGGT+GGG | 0.557012 | 1.2:-65375807 | MS.gene20811:CDS |
CAAAGTAGCTACACTTACAA+TGG | 0.557980 | 1.2:+65376265 | None:intergenic |
ATTGAGAAAGTGGTTGTGGC+AGG | 0.560585 | 1.2:-65375903 | MS.gene20811:CDS |
GAGAAGGGTGAGGATAGTGA+TGG | 0.583678 | 1.2:+65376424 | None:intergenic |
AGAGAAGAAAAGATAGAGGG+AGG | 0.590383 | 1.2:+65376402 | None:intergenic |
TTGTCACAATTGGTATGGTG+AGG | 0.590458 | 1.2:-65375746 | MS.gene20811:CDS |
AAAGAAAGATGAAATGATGG+AGG | 0.600117 | 1.2:-65375811 | MS.gene20811:CDS |
CTAAGAGAAGAAAAGATAGA+GGG | 0.601150 | 1.2:+65376399 | None:intergenic |
TTGCTATCTACACCCCTGCA+AGG | 0.606162 | 1.2:-65376463 | MS.gene20811:CDS |
GGTAACACAGATTAATGAGG+TGG | 0.609717 | 1.2:-65375673 | MS.gene20811:CDS |
GATTTCTCTATGTAGAAGAA+GGG | 0.614319 | 1.2:-65375694 | MS.gene20811:CDS |
AATATAGTGTCATCCACCAC+TGG | 0.619508 | 1.2:+65375954 | None:intergenic |
GAATAGAAGAATTTGTTGGA+TGG | 0.624191 | 1.2:-65375785 | MS.gene20811:CDS |
GATTGTTAAAGGTCTTATGT+GGG | 0.625679 | 1.2:-65375724 | MS.gene20811:CDS |
AACATAGAGAATACATGGGG+AGG | 0.632641 | 1.2:+65376295 | None:intergenic |
AAGGGTAACACAGATTAATG+AGG | 0.632667 | 1.2:-65375676 | MS.gene20811:CDS |
GGAGGTGGAAGATCCTTGCA+GGG | 0.633817 | 1.2:+65376450 | None:intergenic |
GTGGTGGTGGAAGTTGAGAG+AGG | 0.639795 | 1.2:-65375865 | MS.gene20811:CDS |
CAAGAACATAGAGAATACAT+GGG | 0.640474 | 1.2:+65376291 | None:intergenic |
AGTTGTTGTGAGACCAGTGG+TGG | 0.655710 | 1.2:-65375967 | MS.gene20811:CDS |
GTAGTTTAGGAACATTGTGG+TGG | 0.662467 | 1.2:-65375881 | MS.gene20811:CDS |
CAGGTAGTTTAGGAACATTG+TGG | 0.681497 | 1.2:-65375884 | MS.gene20811:CDS |
GAGGTGGAAGATCCTTGCAG+GGG | 0.700426 | 1.2:+65376451 | None:intergenic |
AAGAGTTGTTGTGAGACCAG+TGG | 0.721375 | 1.2:-65375970 | MS.gene20811:CDS |
AAGAACATAGAGAATACATG+GGG | 0.725668 | 1.2:+65376292 | None:intergenic |
ACTGAGTCAGAATGATGACA+AGG | 0.757755 | 1.2:-65375643 | MS.gene20811:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTATCTAATTGTCACAAT+TGG | - | chr1.2:65376388-65376407 | MS.gene20811:CDS | 20.0% |
! | AAAAGAGAAAAGATAAGGTA+AGG | + | chr1.2:65375819-65375838 | None:intergenic | 25.0% |
! | AAAGAGAAAAGATAAGGTAA+GGG | + | chr1.2:65375818-65375837 | None:intergenic | 25.0% |
! | AACAAAGAAAGATGAAATGA+TGG | - | chr1.2:65376330-65376349 | MS.gene20811:CDS | 25.0% |
! | AATTGGATGAATCATTCATA+AGG | + | chr1.2:65375931-65375950 | None:intergenic | 25.0% |
! | ATAGCAAAAGAGAAAAGATA+AGG | + | chr1.2:65375824-65375843 | None:intergenic | 25.0% |
! | ATAGTTGAAGAAGAAATCTT+TGG | + | chr1.2:65375660-65375679 | None:intergenic | 25.0% |
! | TACATGAAACAACACAAATT+TGG | - | chr1.2:65376149-65376168 | MS.gene20811:CDS | 25.0% |
!!! | TTCACTTTTCAAATATGTGT+TGG | - | chr1.2:65376001-65376020 | MS.gene20811:CDS | 25.0% |
!!! | TTTCAAATATGTGTTGGTTT+AGG | - | chr1.2:65376007-65376026 | MS.gene20811:CDS | 25.0% |
AAAGAAAGATGAAATGATGG+AGG | - | chr1.2:65376333-65376352 | MS.gene20811:CDS | 30.0% | |
AAGAACATAGAGAATACATG+GGG | + | chr1.2:65375855-65375874 | None:intergenic | 30.0% | |
ACAAGAACATAGAGAATACA+TGG | + | chr1.2:65375857-65375876 | None:intergenic | 30.0% | |
ACTTTGATCAATGGTTTGAT+GGG | - | chr1.2:65375896-65375915 | MS.gene20811:CDS | 30.0% | |
AGTTGAGAATTTAGGTGTTA+TGG | - | chr1.2:65376303-65376322 | MS.gene20811:CDS | 30.0% | |
AGTTTGGAGAAGAATAGAAT+TGG | + | chr1.2:65375948-65375967 | None:intergenic | 30.0% | |
ATGGATTTGAAGGTAGAATT+TGG | + | chr1.2:65375786-65375805 | None:intergenic | 30.0% | |
CAAGAACATAGAGAATACAT+GGG | + | chr1.2:65375856-65375875 | None:intergenic | 30.0% | |
CTAAGAGAAGAAAAGATAGA+GGG | + | chr1.2:65375748-65375767 | None:intergenic | 30.0% | |
GATTTCTCTATGTAGAAGAA+GGG | - | chr1.2:65376450-65376469 | MS.gene20811:CDS | 30.0% | |
TACTTTGATCAATGGTTTGA+TGG | - | chr1.2:65375895-65375914 | MS.gene20811:CDS | 30.0% | |
TCTAATTGTCACAATTGGTA+TGG | - | chr1.2:65376393-65376412 | MS.gene20811:CDS | 30.0% | |
TGATTTCTCTATGTAGAAGA+AGG | - | chr1.2:65376449-65376468 | MS.gene20811:CDS | 30.0% | |
TTGGAAAAAGAGAGAGATTA+TGG | - | chr1.2:65376218-65376237 | MS.gene20811:CDS | 30.0% | |
! | AAGCAGAATGATATTTCTGT+TGG | - | chr1.2:65376123-65376142 | MS.gene20811:CDS | 30.0% |
! | AGCAGAATGATATTTCTGTT+GGG | - | chr1.2:65376124-65376143 | MS.gene20811:CDS | 30.0% |
! | GATTGTTAAAGGTCTTATGT+GGG | - | chr1.2:65376420-65376439 | MS.gene20811:CDS | 30.0% |
!! | GAATAGAAGAATTTGTTGGA+TGG | - | chr1.2:65376359-65376378 | MS.gene20811:CDS | 30.0% |
AAACTCGTCTTTACATGTCA+TGG | - | chr1.2:65375963-65375982 | MS.gene20811:CDS | 35.0% | |
AAGGGTAACACAGATTAATG+AGG | - | chr1.2:65376468-65376487 | MS.gene20811:CDS | 35.0% | |
ACAGATTAATGAGGTGGAAT+TGG | - | chr1.2:65376477-65376496 | MS.gene20811:CDS | 35.0% | |
AGAGAGGAAGTTGAGAATTT+AGG | - | chr1.2:65376295-65376314 | MS.gene20811:CDS | 35.0% | |
ATCGTCAAAAACATCGTTGT+CGG | + | chr1.2:65376068-65376087 | None:intergenic | 35.0% | |
ATGACATGTAAAGACGAGTT+TGG | + | chr1.2:65375964-65375983 | None:intergenic | 35.0% | |
CAAAGTAGCTACACTTACAA+TGG | + | chr1.2:65375882-65375901 | None:intergenic | 35.0% | |
GCTAAGAGAAGAAAAGATAG+AGG | + | chr1.2:65375749-65375768 | None:intergenic | 35.0% | |
GTCTTTACATGTCATGGAAA+TGG | - | chr1.2:65375969-65375988 | MS.gene20811:CDS | 35.0% | |
GTGGGAATAGAAGAATTTGT+TGG | - | chr1.2:65376355-65376374 | MS.gene20811:CDS | 35.0% | |
! | AAAGATGAAATGATGGAGGT+GGG | - | chr1.2:65376337-65376356 | MS.gene20811:CDS | 35.0% |
! | AGTGTAGCTACTTTGATCAA+TGG | - | chr1.2:65375887-65375906 | MS.gene20811:CDS | 35.0% |
! | GAGATTATGGATTGAGAAAG+TGG | - | chr1.2:65376231-65376250 | MS.gene20811:CDS | 35.0% |
! | GGATTGTTAAAGGTCTTATG+TGG | - | chr1.2:65376419-65376438 | MS.gene20811:CDS | 35.0% |
! | GTTGTTGTGAATGGATTTGA+AGG | + | chr1.2:65375796-65375815 | None:intergenic | 35.0% |
!! | GATGACACTATATTTGGTGT+TGG | - | chr1.2:65376199-65376218 | MS.gene20811:CDS | 35.0% |
!! | TAGAAGAATTTGTTGGATGG+TGG | - | chr1.2:65376362-65376381 | MS.gene20811:CDS | 35.0% |
AAAAGATAGAGGGAGGAGAA+GGG | + | chr1.2:65375738-65375757 | None:intergenic | 40.0% | |
AACATAGAGAATACATGGGG+AGG | + | chr1.2:65375852-65375871 | None:intergenic | 40.0% | |
AAGGTAAGGGTTGTTGTGAA+TGG | + | chr1.2:65375805-65375824 | None:intergenic | 40.0% | |
AATATAGTGTCATCCACCAC+TGG | + | chr1.2:65376193-65376212 | None:intergenic | 40.0% | |
ACTGAGTCAGAATGATGACA+AGG | - | chr1.2:65376501-65376520 | MS.gene20811:CDS | 40.0% | |
AGAGAAGAAAAGATAGAGGG+AGG | + | chr1.2:65375745-65375764 | None:intergenic | 40.0% | |
CAGGTAGTTTAGGAACATTG+TGG | - | chr1.2:65376260-65376279 | MS.gene20811:CDS | 40.0% | |
GGTAACACAGATTAATGAGG+TGG | - | chr1.2:65376471-65376490 | MS.gene20811:CDS | 40.0% | |
GGTATGGTGAGGATTGTTAA+AGG | - | chr1.2:65376409-65376428 | MS.gene20811:CDS | 40.0% | |
GTAGTTTAGGAACATTGTGG+TGG | - | chr1.2:65376263-65376282 | MS.gene20811:CDS | 40.0% | |
TTGTCACAATTGGTATGGTG+AGG | - | chr1.2:65376398-65376417 | MS.gene20811:CDS | 40.0% | |
! | ATGGATTGAGAAAGTGGTTG+TGG | - | chr1.2:65376237-65376256 | MS.gene20811:CDS | 40.0% |
! | GAAAGATGAAATGATGGAGG+TGG | - | chr1.2:65376336-65376355 | MS.gene20811:CDS | 40.0% |
!! | GACAACGATGTTTTTGACGA+TGG | - | chr1.2:65376067-65376086 | MS.gene20811:CDS | 40.0% |
!! | GTGGTGGATGACACTATATT+TGG | - | chr1.2:65376193-65376212 | MS.gene20811:CDS | 40.0% |
!!! | GACGATGGTTCTAGTAGTTT+TGG | - | chr1.2:65376082-65376101 | MS.gene20811:CDS | 40.0% |
AAGAGTTGTTGTGAGACCAG+TGG | - | chr1.2:65376174-65376193 | MS.gene20811:CDS | 45.0% | |
ATTGAGAAAGTGGTTGTGGC+AGG | - | chr1.2:65376241-65376260 | MS.gene20811:CDS | 45.0% | |
GAAAAGATAGAGGGAGGAGA+AGG | + | chr1.2:65375739-65375758 | None:intergenic | 45.0% | |
GTTTAGGAACATTGTGGTGG+TGG | - | chr1.2:65376266-65376285 | MS.gene20811:CDS | 45.0% | |
! | ATTGAAGCAAGCATTGCAGC+TGG | - | chr1.2:65376031-65376050 | MS.gene20811:CDS | 45.0% |
! | CTTCTCTTAGCTAGTCTCTC+TGG | - | chr1.2:65375758-65375777 | MS.gene20811:CDS | 45.0% |
AGTTGTTGTGAGACCAGTGG+TGG | - | chr1.2:65376177-65376196 | MS.gene20811:CDS | 50.0% | |
GAGAAGGGTGAGGATAGTGA+TGG | + | chr1.2:65375723-65375742 | None:intergenic | 50.0% | |
GTGGTTGTGGCAGGTAGTTT+AGG | - | chr1.2:65376250-65376269 | MS.gene20811:CDS | 50.0% | |
TTGCTATCTACACCCCTGCA+AGG | - | chr1.2:65375681-65375700 | MS.gene20811:CDS | 50.0% | |
! | TGAGGATAGTGATGGTGAGG+AGG | + | chr1.2:65375715-65375734 | None:intergenic | 50.0% |
AGGAGGTGGAAGATCCTTGC+AGG | + | chr1.2:65375698-65375717 | None:intergenic | 55.0% | |
ATAGAGGGAGGAGAAGGGTG+AGG | + | chr1.2:65375733-65375752 | None:intergenic | 55.0% | |
GAGGTGGAAGATCCTTGCAG+GGG | + | chr1.2:65375696-65375715 | None:intergenic | 55.0% | |
GGAGGTGGAAGATCCTTGCA+GGG | + | chr1.2:65375697-65375716 | None:intergenic | 55.0% | |
! | GGATAGTGATGGTGAGGAGG+TGG | + | chr1.2:65375712-65375731 | None:intergenic | 55.0% |
! | GGGTGAGGATAGTGATGGTG+AGG | + | chr1.2:65375718-65375737 | None:intergenic | 55.0% |
!! | GTGGTGGTGGAAGTTGAGAG+AGG | - | chr1.2:65376279-65376298 | MS.gene20811:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 65375638 | 65376528 | 65375638 | ID=MS.gene20811 |
chr1.2 | mRNA | 65375638 | 65376528 | 65375638 | ID=MS.gene20811.t1;Parent=MS.gene20811 |
chr1.2 | exon | 65375638 | 65376528 | 65375638 | ID=MS.gene20811.t1.exon1;Parent=MS.gene20811.t1 |
chr1.2 | CDS | 65375638 | 65376528 | 65375638 | ID=cds.MS.gene20811.t1;Parent=MS.gene20811.t1 |
Gene Sequence |
Protein sequence |