AlfalfaGEDB | MS.gene20811

M. sativa cultivar XinJiangDaYe / MS.gene20811

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20811.t1	XP_003591393.1	98.3	296	5	0	1	296	1	296	5.10E-158	567

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20811.t1	G7ICX3	98.3	296	5	0	1	296	1	296	3.7e-158	567.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene061044	MS.gene20811	0.823604	1.27E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20811.t1	MTR_1g086950	98.311	296	5	0	1	296	1	296	0.0	591
MS.gene20811.t1	MTR_7g109590	51.768	311	122	7	1	295	1	299	4.59e-89	268

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20811.t1	AT2G47360	42.553	235	100	6	63	278	63	281	1.28e-50	169
MS.gene20811.t1	AT1G02570	38.559	236	129	5	64	296	56	278	8.67e-44	150
MS.gene20811.t1	AT1G02575	37.755	196	102	8	75	267	67	245	3.12e-31	118

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Find 76 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAAAAGATAAGGTA+AGG	0.399838	1.2:+65376328	None:intergenic
AAAAGATAGAGGGAGGAGAA+GGG	0.494482	1.2:+65376409	None:intergenic
AAACTCGTCTTTACATGTCA+TGG	0.528069	1.2:-65376181	MS.gene20811:CDS
AAAGAAAGATGAAATGATGG+AGG	0.600117	1.2:-65375811	MS.gene20811:CDS
AAAGAGAAAAGATAAGGTAA+GGG	0.510747	1.2:+65376329	None:intergenic
AAAGATGAAATGATGGAGGT+GGG	0.557012	1.2:-65375807	MS.gene20811:CDS
AACAAAGAAAGATGAAATGA+TGG	0.484417	1.2:-65375814	MS.gene20811:CDS
AACATAGAGAATACATGGGG+AGG	0.632641	1.2:+65376295	None:intergenic
AAGAACATAGAGAATACATG+GGG	0.725668	1.2:+65376292	None:intergenic
AAGAGTTGTTGTGAGACCAG+TGG	0.721375	1.2:-65375970	MS.gene20811:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAGATGAAATGATGG+AGG	-	chr1.2:65376333-65376352	MS.gene20811:CDS	30.0%
AAGAACATAGAGAATACATG+GGG	+	chr1.2:65375855-65375874	None:intergenic	30.0%
ACAAGAACATAGAGAATACA+TGG	+	chr1.2:65375857-65375876	None:intergenic	30.0%
ACTTTGATCAATGGTTTGAT+GGG	-	chr1.2:65375896-65375915	MS.gene20811:CDS	30.0%
AGTTGAGAATTTAGGTGTTA+TGG	-	chr1.2:65376303-65376322	MS.gene20811:CDS	30.0%
AGTTTGGAGAAGAATAGAAT+TGG	+	chr1.2:65375948-65375967	None:intergenic	30.0%
ATGGATTTGAAGGTAGAATT+TGG	+	chr1.2:65375786-65375805	None:intergenic	30.0%
CAAGAACATAGAGAATACAT+GGG	+	chr1.2:65375856-65375875	None:intergenic	30.0%
CTAAGAGAAGAAAAGATAGA+GGG	+	chr1.2:65375748-65375767	None:intergenic	30.0%
GATTTCTCTATGTAGAAGAA+GGG	-	chr1.2:65376450-65376469	MS.gene20811:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	65375638	65376528	65375638	ID=MS.gene20811
chr1.2	mRNA	65375638	65376528	65375638	ID=MS.gene20811.t1;Parent=MS.gene20811
chr1.2	exon	65375638	65376528	65375638	ID=MS.gene20811.t1.exon1;Parent=MS.gene20811.t1
chr1.2	CDS	65375638	65376528	65375638	ID=cds.MS.gene20811.t1;Parent=MS.gene20811.t1

Gene Sequence

>MS.gene20811

ATGGATTGGCAGAAAAAATCCAAAGATTTCTTCTTCAACTATATTGCTATCTACACCCCTGCAAGGATCTTCCACCTCCTCACCATCACTATCCTCACCCTTCTCCTCCCTCTATCTTTTCTTCTCTTAGCTAGTCTCTCTGGTGCCAAATTCTACCTTCAAATCCATTCACAACAACCCTTACCTTATCTTTTCTCTTTTGCTATTCACACCTCCCCATGTATTCTCTATGTTCTTGTTTCCATTGTAAGTGTAGCTACTTTGATCAATGGTTTGATGGGAAAAATCAACCTTATGAATGATTCATCCAATTCTATTCTTCTCCAAACTCGTCTTTACATGTCATGGAAATGGATTCTTCTTTTCACTTTTCAAATATGTGTTGGTTTAGGAATTGAAGCAAGCATTGCAGCTGGAGTTTTCGACTCCGACAACGATGTTTTTGACGATGGTTCTAGTAGTTTTGGTGTTGAGAGAAGCTTCATAAGCAGAATGATATTTCTGTTGGGACTACATGAAACAACACAAATTTGGTCAAGAGTTGTTGTGAGACCAGTGGTGGATGACACTATATTTGGTGTTGGAAAAAGAGAGAGATTATGGATTGAGAAAGTGGTTGTGGCAGGTAGTTTAGGAACATTGTGGTGGTGGAAGTTGAGAGAGGAAGTTGAGAATTTAGGTGTTATGGCTGAAACAAAGAAAGATGAAATGATGGAGGTGGGAATAGAAGAATTTGTTGGATGGTGGTTATATTATCTAATTGTCACAATTGGTATGGTGAGGATTGTTAAAGGTCTTATGTGGGTGTTCATGATTTCTCTATGTAGAAGAAGGGTAACACAGATTAATGAGGTGGAATTGGAACTGAGTCAGAATGATGACAAGGTGTAA

Protein sequence

>MS.gene20811.t1

MDWQKKSKDFFFNYIAIYTPARIFHLLTITILTLLLPLSFLLLASLSGAKFYLQIHSQQPLPYLFSFAIHTSPCILYVLVSIVSVATLINGLMGKINLMNDSSNSILLQTRLYMSWKWILLFTFQICVGLGIEASIAAGVFDSDNDVFDDGSSSFGVERSFISRMIFLLGLHETTQIWSRVVVRPVVDDTIFGVGKRERLWIEKVVVAGSLGTLWWWKLREEVENLGVMAETKKDEMMEVGIEEFVGWWLYYLIVTIGMVRIVKGLMWVFMISLCRRRVTQINEVELELSQNDDKV