AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061044


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061044.t1 MTR_1g034320 96.082 485 19 0 1 485 1 485 0.0 936
MS.gene061044.t1 MTR_1g034330 82.209 489 83 1 1 485 1 489 0.0 848
MS.gene061044.t1 MTR_4g068550 65.567 485 163 3 1 485 1 481 0.0 672
MS.gene061044.t1 MTR_3g111530 53.376 474 212 7 13 482 89 557 1.78e-176 507
MS.gene061044.t1 MTR_1g021652 50.000 478 231 6 8 483 52 523 6.02e-171 492
MS.gene061044.t1 MTR_2g087890 38.397 474 271 8 14 482 22 479 1.17e-105 323
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061044.t1 AT5G42650 50.000 474 230 5 12 483 49 517 1.43e-169 488
MS.gene061044.t1 AT4G15440 39.898 391 222 5 94 482 4 383 3.79e-87 272

Find 90 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATTGACGATGGGCTTTC+TGG 0.181193 1.4:-18525118 MS.gene061044:CDS
CTTGCTCCACTTGCAACTTT+AGG 0.254713 1.4:-18524947 MS.gene061044:CDS
TCAAGATAATTGAAAATCTT+AGG 0.276501 1.4:+18524920 None:intergenic
TTGTGGCGAAAAGGTTTGTT+GGG 0.354191 1.4:-18523172 MS.gene061044:CDS
TGCTATGACTCTTGGGTTTG+AGG 0.356639 1.4:+18525381 None:intergenic
TTCATAAAGCTTCTTGTAAG+AGG 0.365671 1.4:+18523637 None:intergenic
GTCCTAAAATGTTTGATACT+TGG 0.383207 1.4:-18524982 MS.gene061044:CDS
GGATTGGGAATTGATTCTTT+AGG 0.384415 1.4:+18523501 None:intergenic
AGAAGAATTTGTCTCTTCCT+TGG 0.393328 1.4:+18525470 None:intergenic
CCAATCCTCTTCAAATGGTT+AGG 0.410637 1.4:-18523485 MS.gene061044:CDS
TAGTCGTGTCGGTCGAAAAT+CGG 0.415344 1.4:+18525502 None:intergenic
CCTAACCATTTGAAGAGGAT+TGG 0.428897 1.4:+18523485 None:intergenic
TCTAAAAGTGCTATGACTCT+TGG 0.437203 1.4:+18525373 None:intergenic
CTTTCGCCACAAAAGATCCT+AGG 0.437991 1.4:-18523217 MS.gene061044:CDS
TTTGTGGCGAAAAGGTTTGT+TGG 0.438388 1.4:-18523173 MS.gene061044:CDS
CTAACCATTTGAAGAGGATT+GGG 0.438902 1.4:+18523486 None:intergenic
CTAAAAGTGCTATGACTCTT+GGG 0.446715 1.4:+18525374 None:intergenic
CCTTTCCTGCTTGTTTGACA+AGG 0.452440 1.4:-18524874 MS.gene061044:intron
TCGAAAATCGGTCCGATGAA+AGG 0.456600 1.4:+18525514 None:intergenic
AATTCCCAATCCTCTTCAAA+TGG 0.458136 1.4:-18523490 MS.gene061044:CDS
AAAGGGAGGCCATAGCTGCC+TGG 0.458877 1.4:+18525532 None:intergenic
CCTTTGATAAGTGCATGGTT+TGG 0.464225 1.4:+18525220 None:intergenic
GCGGAGAATAAGCAATGTCC+TGG 0.477764 1.4:-18523086 MS.gene061044:CDS
AAACAAATCCCAGGCAGCTA+TGG 0.478988 1.4:-18525541 MS.gene061044:CDS
TCTTGGGTTTGAGGAAATGA+AGG 0.480085 1.4:+18525390 None:intergenic
GCATATTGATAAGGCACAGC+AGG 0.481391 1.4:+18523323 None:intergenic
GGTTTGGTTCAGTTGTGTCT+AGG 0.483967 1.4:+18525236 None:intergenic
CCTTGTCAAACAAGCAGGAA+AGG 0.488909 1.4:+18524874 None:intergenic
TAGTGGGAGCTCTTTGTTGG+TGG 0.491046 1.4:+18525564 None:intergenic
TTTGTGTAGATTGTTATTGG+TGG 0.498822 1.4:-18523045 MS.gene061044:CDS
GAAACTATCCTTGGTGATCA+AGG 0.500468 1.4:-18525004 MS.gene061044:CDS
AACCCTTCTGAAACTATCCT+TGG 0.510155 1.4:-18525013 MS.gene061044:CDS
TTCAGAACCAACATGCCTCC+AGG 0.517385 1.4:-18525415 MS.gene061044:CDS
AATTCAAACACTAGAAGCCT+TGG 0.519083 1.4:+18522941 None:intergenic
CATTGCTTATTCTCCGCTGA+AGG 0.529891 1.4:+18523092 None:intergenic
CGAAAATCGGTCCGATGAAA+GGG 0.532494 1.4:+18525515 None:intergenic
AGCTATGGCCTCCCTTTCAT+CGG 0.539465 1.4:-18525526 MS.gene061044:CDS
TAGACAACTGATTTAACTAA+CGG 0.540239 1.4:+18523365 None:intergenic
TGGGGTAACAATTCAGTCGT+TGG 0.540395 1.4:-18523396 MS.gene061044:CDS
AAGGGAGGCCATAGCTGCCT+GGG 0.542022 1.4:+18525533 None:intergenic
TTTAAGACTATACTTTCTGA+TGG 0.546680 1.4:-18525148 MS.gene061044:CDS
CCAAACCATGCACTTATCAA+AGG 0.547827 1.4:-18525220 MS.gene061044:CDS
ACCGCAGGCTTCAACGCATA+CGG 0.548311 1.4:-18523527 MS.gene061044:CDS
CTTGTCAAACAAGCAGGAAA+GGG 0.552808 1.4:+18524875 None:intergenic
GCGAAAAGGTTTGTTGGGGA+AGG 0.554378 1.4:-18523167 MS.gene061044:CDS
AAAGTATAGTCTTAAAGAGA+GGG 0.558116 1.4:+18525155 None:intergenic
GAAAGTATAGTCTTAAAGAG+AGG 0.560352 1.4:+18525154 None:intergenic
GATGGGCTTTCTGGTAAAAG+TGG 0.565694 1.4:-18525109 MS.gene061044:CDS
CACGACTACTTCTACAACCA+AGG 0.569461 1.4:-18525487 MS.gene061044:CDS
AGCCTTGGTGAGTGAAGTAA+TGG 0.570221 1.4:+18522956 None:intergenic
AGAAACCTTTGATAAGTGCA+TGG 0.573003 1.4:+18525215 None:intergenic
TTTCGCCACAAAAGATCCTA+GGG 0.574619 1.4:-18523216 MS.gene061044:CDS
TCTCACCTTGTCAAACAAGC+AGG 0.589767 1.4:+18524869 None:intergenic
ACGAACCTAACCATTTGAAG+AGG 0.591274 1.4:+18523480 None:intergenic
TCAATATGCAAAAGCAAGAG+AGG 0.593501 1.4:-18523309 MS.gene061044:CDS
GAAGGGACCTGGAGGCATGT+TGG 0.593712 1.4:+18525408 None:intergenic
TCACCAAGGATAGTTTCAGA+AGG 0.597461 1.4:+18525010 None:intergenic
AGCACAACAAGATTCTTCCC+AGG 0.597965 1.4:+18523068 None:intergenic
TCAGGATCATCGAAAACCCT+AGG 0.598482 1.4:+18523200 None:intergenic
CACCAAGGATAGTTTCAGAA+GGG 0.600780 1.4:+18525011 None:intergenic
AGATAATTGAAAATCTTAGG+AGG 0.601465 1.4:+18524923 None:intergenic
CCGTGGTAAAACAAGAAGGT+GGG 0.607824 1.4:-18523415 MS.gene061044:CDS
TTTGAGGAAATGAAGGGACC+TGG 0.609736 1.4:+18525397 None:intergenic
AGCACATACACGGTAACCAC+CGG 0.615577 1.4:+18525261 None:intergenic
TTCAAATGGTTAGGTTCGTG+CGG 0.618289 1.4:-18523476 MS.gene061044:CDS
TACCATTACTTCACTCACCA+AGG 0.619737 1.4:-18522958 MS.gene061044:CDS
CTCCCACTAAAACAAATCCC+AGG 0.620738 1.4:-18525550 MS.gene061044:CDS
GGAGGTCCTAAAGTTGCAAG+TGG 0.621056 1.4:+18524941 None:intergenic
GGTGAAAATGATATTGTGGC+AGG 0.623250 1.4:+18523547 None:intergenic
AGAACCGTGGTAAAACAAGA+AGG 0.625421 1.4:-18523419 MS.gene061044:CDS
TGTGGCGAAAAGGTTTGTTG+GGG 0.625982 1.4:-18523171 MS.gene061044:CDS
CGGAGAATAAGCAATGTCCT+GGG 0.627055 1.4:-18523085 MS.gene061044:CDS
CTTGGGTTTGAGGAAATGAA+GGG 0.627221 1.4:+18525391 None:intergenic
CGTGGTAAAACAAGAAGGTG+GGG 0.636206 1.4:-18523414 MS.gene061044:CDS
ACCGTATGCGTTGAAGCCTG+CGG 0.636771 1.4:+18523526 None:intergenic
AAATCGGTCCGATGAAAGGG+AGG 0.640330 1.4:+18525518 None:intergenic
ATGCCGTCGACAAAATTCAC+CGG 0.643799 1.4:-18525280 MS.gene061044:CDS
GGTTGTAGAAGTAGTCGTGT+CGG 0.648799 1.4:+18525491 None:intergenic
AGAAACTGAAGAGCCTTCAG+CGG 0.651912 1.4:-18523105 MS.gene061044:CDS
ACGGCATGTAAGTGCCGTCG+AGG 0.653207 1.4:+18525296 None:intergenic
ACCGTGGTAAAACAAGAAGG+TGG 0.653762 1.4:-18523416 MS.gene061044:CDS
GAAGAGAATCGGGAAAGATG+CGG 0.653874 1.4:+18525348 None:intergenic
CTGCGGTGAAAATGATATTG+TGG 0.674126 1.4:+18523543 None:intergenic
GAGGAAATGAAGGGACCTGG+AGG 0.681898 1.4:+18525400 None:intergenic
CCGTCGACAAAATTCACCGG+TGG 0.696972 1.4:-18525277 MS.gene061044:CDS
TGTCTAGGTAAGCACATACA+CGG 0.697884 1.4:+18525251 None:intergenic
GCAGGCTTCAACGCATACGG+TGG 0.702595 1.4:-18523524 MS.gene061044:CDS
AGAGATACACAAAGAACTCG+CGG 0.711179 1.4:-18523450 MS.gene061044:CDS
CGCGGACGAGATAAGAACCG+TGG 0.717719 1.4:-18523432 MS.gene061044:CDS
AATTGTGAAGAGTCATGACG+CGG 0.724232 1.4:-18523282 MS.gene061044:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAATGTGATA+TGG - chr1.4:18524411-18524430 MS.gene061044:intron 10.0%
!!! AAATTAATTGTTCTTTTTTT+GGG - chr1.4:18524501-18524520 MS.gene061044:intron 10.0%
!!! ATCAAAATCTAAATATTTTA+AGG - chr1.4:18524774-18524793 MS.gene061044:intron 10.0%
!! TGGTTATTACTTATTTATTA+CGG - chr1.4:18524431-18524450 MS.gene061044:intron 15.0%
!!! AAAGAGTGAATATTTTATTA+AGG - chr1.4:18523988-18524007 MS.gene061044:intron 15.0%
!!! CTTTGTTGTTTTTATAATTA+TGG - chr1.4:18524557-18524576 MS.gene061044:intron 15.0%
!!! GAAATTAATTGTTCTTTTTT+TGG - chr1.4:18524500-18524519 MS.gene061044:intron 15.0%
!! AAAAAGTGAAAACTATATTG+TGG - chr1.4:18524365-18524384 MS.gene061044:intron 20.0%
!! AACTAATAACTAAAAAGCAA+TGG - chr1.4:18524305-18524324 MS.gene061044:intron 20.0%
!! CAAATGCTACAATTAAAAAT+TGG + chr1.4:18523907-18523926 None:intergenic 20.0%
!! GAAAAGAATCATATGTTTAA+GGG + chr1.4:18523704-18523723 None:intergenic 20.0%
!! TCAAGATAATTGAAAATCTT+AGG + chr1.4:18523619-18523638 None:intergenic 20.0%
!! TCTCTAACATTAAATTGTTA+CGG - chr1.4:18524870-18524889 MS.gene061044:intron 20.0%
!!! ACTCATTAACTTGATTTTTA+AGG + chr1.4:18524032-18524051 None:intergenic 20.0%
!!! AGATTGTTGAATTGTATTTT+TGG + chr1.4:18523102-18523121 None:intergenic 20.0%
!!! CATGAATCTAAATTTTACTT+TGG + chr1.4:18524751-18524770 None:intergenic 20.0%
!!! CATGATTTTGATCTTAAATA+AGG + chr1.4:18524644-18524663 None:intergenic 20.0%
!!! CTTAAACATATGATTCTTTT+CGG - chr1.4:18523703-18523722 MS.gene061044:intron 20.0%
! AAAAAGGGTGAAATGATATT+TGG - chr1.4:18525288-18525307 MS.gene061044:CDS 25.0%
! AAAATCAAGTTAATGAGTCA+AGG - chr1.4:18524034-18524053 MS.gene061044:intron 25.0%
! AGAAAAACTCAGCTTAATAA+AGG + chr1.4:18524207-18524226 None:intergenic 25.0%
! AGATAATTGAAAATCTTAGG+AGG + chr1.4:18523616-18523635 None:intergenic 25.0%
! CAAACATAATAATGATGTCT+AGG - chr1.4:18524710-18524729 MS.gene061044:intron 25.0%
! CGAAAAGAATCATATGTTTA+AGG + chr1.4:18523705-18523724 None:intergenic 25.0%
! GAAAAACTCAGCTTAATAAA+GGG + chr1.4:18524206-18524225 None:intergenic 25.0%
!! AAAGTATAGTCTTAAAGAGA+GGG + chr1.4:18523384-18523403 None:intergenic 25.0%
!! AACCAAGTATCAAACATTTT+AGG + chr1.4:18523559-18523578 None:intergenic 25.0%
!! AGTTTAAAGTAGTAAGTTTG+TGG - chr1.4:18524255-18524274 MS.gene061044:intron 25.0%
!! TAGACAACTGATTTAACTAA+CGG + chr1.4:18525174-18525193 None:intergenic 25.0%
!! TTTAAGACTATACTTTCTGA+TGG - chr1.4:18523388-18523407 MS.gene061044:CDS 25.0%
!!! TTTTAACTCTATTATGAGTG+TGG - chr1.4:18523459-18523478 MS.gene061044:CDS 25.0%
ATTGTGGTGAAAATGTGATA+TGG - chr1.4:18524381-18524400 MS.gene061044:intron 30.0%
GTCCTAAAATGTTTGATACT+TGG - chr1.4:18523554-18523573 MS.gene061044:CDS 30.0%
TTCATAAAGCTTCTTGTAAG+AGG + chr1.4:18524902-18524921 None:intergenic 30.0%
! AAGTATGTTTTGTGGTCTAA+TGG - chr1.4:18525405-18525424 MS.gene061044:CDS 30.0%
! AGTATGTTTTGTGGTCTAAT+GGG - chr1.4:18525406-18525425 MS.gene061044:CDS 30.0%
! AGTTGTTGAAGTATGTTTTG+TGG - chr1.4:18525397-18525416 MS.gene061044:CDS 30.0%
! GAAAGTATAGTCTTAAAGAG+AGG + chr1.4:18523385-18523404 None:intergenic 30.0%
! GCTTTTGTGTAGATTGTTAT+TGG - chr1.4:18525488-18525507 MS.gene061044:CDS 30.0%
! TTTGTGTAGATTGTTATTGG+TGG - chr1.4:18525491-18525510 MS.gene061044:CDS 30.0%
!! CTTGCTTTTGCATATTGATA+AGG + chr1.4:18525225-18525244 None:intergenic 30.0%
!! GTTTTAATGAGATTGACGAT+GGG - chr1.4:18523410-18523429 MS.gene061044:CDS 30.0%
!! TTTTTGTTGTCGAAGAGAAT+CGG + chr1.4:18523202-18523221 None:intergenic 30.0%
!!! GAGACTAAAAATGTTGCTTT+TGG - chr1.4:18525546-18525565 MS.gene061044:CDS 30.0%
AACATTAAATTGTTACGGCC+AGG - chr1.4:18524875-18524894 MS.gene061044:CDS 35.0%
AATTCCCAATCCTCTTCAAA+TGG - chr1.4:18525046-18525065 MS.gene061044:CDS 35.0%
AGAAACCTTTGATAAGTGCA+TGG + chr1.4:18523324-18523343 None:intergenic 35.0%
AGAAGAATTTGTCTCTTCCT+TGG + chr1.4:18523069-18523088 None:intergenic 35.0%
CTAACCATTTGAAGAGGATT+GGG + chr1.4:18525053-18525072 None:intergenic 35.0%
GAATCATATGTTTAAGGGTG+TGG + chr1.4:18523699-18523718 None:intergenic 35.0%
TCAATATGCAAAAGCAAGAG+AGG - chr1.4:18525227-18525246 MS.gene061044:CDS 35.0%
TTAAACGAAGCAGAAAAAGC+CGG - chr1.4:18524949-18524968 MS.gene061044:CDS 35.0%
! GGATTGGGAATTGATTCTTT+AGG + chr1.4:18525038-18525057 None:intergenic 35.0%
!! CTAAAAGTGCTATGACTCTT+GGG + chr1.4:18523165-18523184 None:intergenic 35.0%
!! GGTTTTAATGAGATTGACGA+TGG - chr1.4:18523409-18523428 MS.gene061044:CDS 35.0%
!! TCTAAAAGTGCTATGACTCT+TGG + chr1.4:18523166-18523185 None:intergenic 35.0%
!! TTTTGTTGTCGAAGAGAATC+GGG + chr1.4:18523201-18523220 None:intergenic 35.0%
!!! GCGGCTTTTGAGATAAAAAA+GGG - chr1.4:18525273-18525292 MS.gene061044:CDS 35.0%
AATTGTGAAGAGTCATGACG+CGG - chr1.4:18525254-18525273 MS.gene061044:CDS 40.0%
ACGAACCTAACCATTTGAAG+AGG + chr1.4:18525059-18525078 None:intergenic 40.0%
AGAACCGTGGTAAAACAAGA+AGG - chr1.4:18525117-18525136 MS.gene061044:CDS 40.0%
AGAGATACACAAAGAACTCG+CGG - chr1.4:18525086-18525105 MS.gene061044:CDS 40.0%
CACCAAGGATAGTTTCAGAA+GGG + chr1.4:18523528-18523547 None:intergenic 40.0%
CCAAACCATGCACTTATCAA+AGG - chr1.4:18523316-18523335 MS.gene061044:CDS 40.0%
CCAATCCTCTTCAAATGGTT+AGG - chr1.4:18525051-18525070 MS.gene061044:CDS 40.0%
CCTAACCATTTGAAGAGGAT+TGG + chr1.4:18525054-18525073 None:intergenic 40.0%
CCTTTGATAAGTGCATGGTT+TGG + chr1.4:18523319-18523338 None:intergenic 40.0%
CTGCGGTGAAAATGATATTG+TGG + chr1.4:18524996-18525015 None:intergenic 40.0%
CTTGGGTTTGAGGAAATGAA+GGG + chr1.4:18523148-18523167 None:intergenic 40.0%
CTTGTCAAACAAGCAGGAAA+GGG + chr1.4:18523664-18523683 None:intergenic 40.0%
GGTGAAAATGATATTGTGGC+AGG + chr1.4:18524992-18525011 None:intergenic 40.0%
TACCATTACTTCACTCACCA+AGG - chr1.4:18525578-18525597 MS.gene061044:CDS 40.0%
TCACCAAGGATAGTTTCAGA+AGG + chr1.4:18523529-18523548 None:intergenic 40.0%
TCTTGGGTTTGAGGAAATGA+AGG + chr1.4:18523149-18523168 None:intergenic 40.0%
TGCTTAACATGTGCCCTAAT+GGG - chr1.4:18524165-18524184 MS.gene061044:intron 40.0%
TGTCTAGGTAAGCACATACA+CGG + chr1.4:18523288-18523307 None:intergenic 40.0%
TTCAAATGGTTAGGTTCGTG+CGG - chr1.4:18525060-18525079 MS.gene061044:CDS 40.0%
TTGCTTAACATGTGCCCTAA+TGG - chr1.4:18524164-18524183 MS.gene061044:intron 40.0%
TTTCGCCACAAAAGATCCTA+GGG - chr1.4:18525320-18525339 MS.gene061044:CDS 40.0%
TTTGTGGCGAAAAGGTTTGT+TGG - chr1.4:18525363-18525382 MS.gene061044:CDS 40.0%
! CACAATATCATTTTCACCGC+AGG - chr1.4:18524994-18525013 MS.gene061044:CDS 40.0%
! GAAAACCCTAGGATCTTTTG+TGG + chr1.4:18525328-18525347 None:intergenic 40.0%
! GAAACTATCCTTGGTGATCA+AGG - chr1.4:18523532-18523551 MS.gene061044:CDS 40.0%
! GGCTTCGCTTCTTTTTAAAC+CGG + chr1.4:18524971-18524990 None:intergenic 40.0%
! TTGTGGCGAAAAGGTTTGTT+GGG - chr1.4:18525364-18525383 MS.gene061044:CDS 40.0%
! TTTTAGTGGGAGCTCTTTGT+TGG + chr1.4:18522978-18522997 None:intergenic 40.0%
!! AACCCTTCTGAAACTATCCT+TGG - chr1.4:18523523-18523542 MS.gene061044:CDS 40.0%
!!! CGCGGCTTTTGAGATAAAAA+AGG - chr1.4:18525272-18525291 MS.gene061044:CDS 40.0%
!!! TGCCTGGGATTTGTTTTAGT+GGG + chr1.4:18522991-18523010 None:intergenic 40.0%
!!! TTTTAGGACCTTGATCACCA+AGG + chr1.4:18523543-18523562 None:intergenic 40.0%
AAACAAATCCCAGGCAGCTA+TGG - chr1.4:18522995-18523014 MS.gene061044:CDS 45.0%
AAGCTTCTTGTAAGAGGACC+TGG + chr1.4:18524896-18524915 None:intergenic 45.0%
ACCGTGGTAAAACAAGAAGG+TGG - chr1.4:18525120-18525139 MS.gene061044:CDS 45.0%
AGAAACTGAAGAGCCTTCAG+CGG - chr1.4:18525431-18525450 MS.gene061044:CDS 45.0%
AGCACAACAAGATTCTTCCC+AGG + chr1.4:18525471-18525490 None:intergenic 45.0%
AGCCTTGGTGAGTGAAGTAA+TGG + chr1.4:18525583-18525602 None:intergenic 45.0%
ATGCCGTCGACAAAATTCAC+CGG - chr1.4:18523256-18523275 MS.gene061044:CDS 45.0%
CACGACTACTTCTACAACCA+AGG - chr1.4:18523049-18523068 MS.gene061044:CDS 45.0%
CATTGCTTATTCTCCGCTGA+AGG + chr1.4:18525447-18525466 None:intergenic 45.0%
CCGTGGTAAAACAAGAAGGT+GGG - chr1.4:18525121-18525140 MS.gene061044:CDS 45.0%
CCTTGTCAAACAAGCAGGAA+AGG + chr1.4:18523665-18523684 None:intergenic 45.0%
CCTTTCCTGCTTGTTTGACA+AGG - chr1.4:18523662-18523681 MS.gene061044:intron 45.0%
CGAAAATCGGTCCGATGAAA+GGG + chr1.4:18523024-18523043 None:intergenic 45.0%
CGGAGAATAAGCAATGTCCT+GGG - chr1.4:18525451-18525470 MS.gene061044:CDS 45.0%
CGTGGTAAAACAAGAAGGTG+GGG - chr1.4:18525122-18525141 MS.gene061044:CDS 45.0%
CTCCCACTAAAACAAATCCC+AGG - chr1.4:18522986-18523005 MS.gene061044:CDS 45.0%
CTTGCTCCACTTGCAACTTT+AGG - chr1.4:18523589-18523608 MS.gene061044:CDS 45.0%
CTTTCGCCACAAAAGATCCT+AGG - chr1.4:18525319-18525338 MS.gene061044:CDS 45.0%
GAAAAACTCAACGTCCTCGA+CGG - chr1.4:18523226-18523245 MS.gene061044:CDS 45.0%
GAAGAGAATCGGGAAAGATG+CGG + chr1.4:18523191-18523210 None:intergenic 45.0%
GCATATTGATAAGGCACAGC+AGG + chr1.4:18525216-18525235 None:intergenic 45.0%
GGTTGTAGAAGTAGTCGTGT+CGG + chr1.4:18523048-18523067 None:intergenic 45.0%
TCAGGATCATCGAAAACCCT+AGG + chr1.4:18525339-18525358 None:intergenic 45.0%
TCGAAAATCGGTCCGATGAA+AGG + chr1.4:18523025-18523044 None:intergenic 45.0%
TCTCACCTTGTCAAACAAGC+AGG + chr1.4:18523670-18523689 None:intergenic 45.0%
TGCTATGACTCTTGGGTTTG+AGG + chr1.4:18523158-18523177 None:intergenic 45.0%
TGGGGTAACAATTCAGTCGT+TGG - chr1.4:18525140-18525159 MS.gene061044:CDS 45.0%
TTTGAGGAAATGAAGGGACC+TGG + chr1.4:18523142-18523161 None:intergenic 45.0%
! CGATGATCCTGAGGTTTTTG+TGG - chr1.4:18525347-18525366 MS.gene061044:CDS 45.0%
! CTAGGATCTTTTGTGGCGAA+AGG + chr1.4:18525321-18525340 None:intergenic 45.0%
! CTGAGGTTTTTGTGGCGAAA+AGG - chr1.4:18525355-18525374 MS.gene061044:CDS 45.0%
! CTTTTCGCCACAAAAACCTC+AGG + chr1.4:18525357-18525376 None:intergenic 45.0%
! GATCTTTTGTGGCGAAAGGT+TGG + chr1.4:18525317-18525336 None:intergenic 45.0%
! GATGGGCTTTCTGGTAAAAG+TGG - chr1.4:18523427-18523446 MS.gene061044:CDS 45.0%
! GGTTTGGTTCAGTTGTGTCT+AGG + chr1.4:18523303-18523322 None:intergenic 45.0%
! GTGCTAACTTGTGCCCATTA+GGG + chr1.4:18524181-18524200 None:intergenic 45.0%
! TAGGGTTTTCGATGATCCTG+AGG - chr1.4:18525338-18525357 MS.gene061044:CDS 45.0%
! TAGTCGTGTCGGTCGAAAAT+CGG + chr1.4:18523037-18523056 None:intergenic 45.0%
!! TGTGGCGAAAAGGTTTGTTG+GGG - chr1.4:18525365-18525384 MS.gene061044:CDS 45.0%
!!! CCCACCTTCTTGTTTTACCA+CGG + chr1.4:18525124-18525143 None:intergenic 45.0%
!!! CTGCCTGGGATTTGTTTTAG+TGG + chr1.4:18522992-18523011 None:intergenic 45.0%
!!! TAATTTTATCAATATATAAT+TGG + chr1.4:18523846-18523865 None:intergenic 5.0%
!!! TTTTATTTTTTTTTACTTTT+GGG - chr1.4:18524141-18524160 MS.gene061044:intron 5.0%
!!! TTTTTATTTTTTTTTACTTT+TGG - chr1.4:18524140-18524159 MS.gene061044:intron 5.0%
AAATCGGTCCGATGAAAGGG+AGG + chr1.4:18523021-18523040 None:intergenic 50.0%
AGCACATACACGGTAACCAC+CGG + chr1.4:18523278-18523297 None:intergenic 50.0%
AGCTATGGCCTCCCTTTCAT+CGG - chr1.4:18523010-18523029 MS.gene061044:CDS 50.0%
GCGGAGAATAAGCAATGTCC+TGG - chr1.4:18525450-18525469 MS.gene061044:CDS 50.0%
GGAGGTCCTAAAGTTGCAAG+TGG + chr1.4:18523598-18523617 None:intergenic 50.0%
TAGTGGGAGCTCTTTGTTGG+TGG + chr1.4:18522975-18522994 None:intergenic 50.0%
TTCAGAACCAACATGCCTCC+AGG - chr1.4:18523121-18523140 MS.gene061044:CDS 50.0%
! CCACCGGTGAATTTTGTCGA+CGG + chr1.4:18523262-18523281 None:intergenic 50.0%
! CGTGCTAACTTGTGCCCATT+AGG + chr1.4:18524182-18524201 None:intergenic 50.0%
! GAGATTGACGATGGGCTTTC+TGG - chr1.4:18523418-18523437 MS.gene061044:CDS 50.0%
!! GCGAAAAGGTTTGTTGGGGA+AGG - chr1.4:18525369-18525388 MS.gene061044:CDS 50.0%
ACCGCAGGCTTCAACGCATA+CGG - chr1.4:18525009-18525028 MS.gene061044:CDS 55.0%
ACCGTATGCGTTGAAGCCTG+CGG + chr1.4:18525013-18525032 None:intergenic 55.0%
CCGTCGACAAAATTCACCGG+TGG - chr1.4:18523259-18523278 MS.gene061044:CDS 55.0%
GAGGAAATGAAGGGACCTGG+AGG + chr1.4:18523139-18523158 None:intergenic 55.0%
AAAGGGAGGCCATAGCTGCC+TGG + chr1.4:18523007-18523026 None:intergenic 60.0%
AAGGGAGGCCATAGCTGCCT+GGG + chr1.4:18523006-18523025 None:intergenic 60.0%
CGCGGACGAGATAAGAACCG+TGG - chr1.4:18525104-18525123 MS.gene061044:CDS 60.0%
GCAGGCTTCAACGCATACGG+TGG - chr1.4:18525012-18525031 MS.gene061044:CDS 60.0%
! ACGGCATGTAAGTGCCGTCG+AGG + chr1.4:18523243-18523262 None:intergenic 60.0%
! GAAGGGACCTGGAGGCATGT+TGG + chr1.4:18523131-18523150 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 18522944 18525614 18522944 ID=MS.gene061044
chr1.4 mRNA 18522944 18525614 18522944 ID=MS.gene061044.t1;Parent=MS.gene061044
chr1.4 exon 18524875 18525614 18524875 ID=MS.gene061044.t1.exon1;Parent=MS.gene061044.t1
chr1.4 CDS 18524875 18525614 18524875 ID=cds.MS.gene061044.t1;Parent=MS.gene061044.t1
chr1.4 exon 18522944 18523661 18522944 ID=MS.gene061044.t1.exon2;Parent=MS.gene061044.t1
chr1.4 CDS 18522944 18523661 18522944 ID=cds.MS.gene061044.t1;Parent=MS.gene061044.t1
Gene Sequence

>MS.gene061044

ATGGCATCTTCAAAACAAGAACAATCTTCCACCAACAAAGAGCTCCCACTAAAACAAATCCCAGGCAGCTATGGCCTCCCTTTCATCGGACCGATTTTCGACCGACACGACTACTTCTACAACCAAGGAAGAGACAAATTCTTCTCAACAAGAATCCAAAAATACAATTCAACAATCTTCAGAACCAACATGCCTCCAGGTCCCTTCATTTCCTCAAACCCAAGAGTCATAGCACTTTTAGACGCCGCATCTTTCCCGATTCTCTTCGACAACAAAAAAGTCGAAAAACTCAACGTCCTCGACGGCACTTACATGCCGTCGACAAAATTCACCGGTGGTTACCGTGTATGTGCTTACCTAGACACAACTGAACCAAACCATGCACTTATCAAAGGTTTCTATCTTAATACTCTTTTATTAAGAAAAGACTCTTTTATCCCTCTCTTTAAGACTATACTTTCTGATGGTTTTAATGAGATTGACGATGGGCTTTCTGGTAAAAGTGGTAAAGCAGATTTTAACTCTATTATGAGTGTGGCTTCGTTTAACTTCATGTTTAAGCTTTTTTGTGATAATAAGAACCCTTCTGAAACTATCCTTGGTGATCAAGGTCCTAAAATGTTTGATACTTGGTTACTCTTTCAACTTGCTCCACTTGCAACTTTAGGACCTCCTAAGATTTTCAATTATCTTGAAGATATCTTGCTACGTACTGTGCCCTTTCCTGCTTGTTTGACAAGGTGAGATTCATACCACACCCTTAAACATATGATTCTTTTCGGTAAATTTCTTGTTTATTTTATAAAAAAAATTACTTAAAATTTTTATGTATTAACAGCATTAATTATGATGAAAAAGATGAAATAATTATCACTAAAGACAAACTTGAAAAAACAGTACCAATTATATATTGATAAAATTAATATTATAATATTACTGAGATCAAATACTTGAACAGAACCAATTTTTAATTGTAGCATTTGATTACTTGAAACAAATTAAAAAGAGAAGATAAATATGAAAAAGAGATGATAAATACGAGAAAAAGAGTGAATATTTTATTAAGGAAAAATGTTAACTTGTGTCCTTAAAAATCAAGTTAATGAGTCAAGGTAGAAATTTTCTATTGTAATTAATTAATGCATTTGAATTTAATTTTTTTACTTTTAATTAATTGAATGCATAAAATTTAAGAATTTTTATTTTTTTTTACTTTTGGGTTGCTTAACATGTGCCCTAATGGGCACAAGTTAGCACGACCCTTTATTAAGCTGAGTTTTTCTAACATGTGCAAATTTACACATGTTAAGAAGTTTAAAGTAGTAAGTTTGTGGTATTTATTATCATAAATGCATACTAAAAACTAATAACTAAAAAGCAATGGACATAATATTAATTCGAGCAATTTTTTTTTTTTAAAAAAAAAGTGAAAACTATATTGTGGTGAAAATGTGATATGGTTGTAACAAAAAAAAAAAAATGTGATATGGTTATTACTTATTTATTACGGTACATATTATTTCAAGATAAAAGTTGACTTCTTGTTCTTTCATTCAGAAATTAATTGTTCTTTTTTTGGGACAAAAAAAGTATTTAAAAATATGTTTACATATCTTTGTTGTTTTTATAATTATGGATAACTCTTGATGCAATTCTTTTTATTGTCATTAAAATTCTTGCAAACTTTCTTGTGAAATCCTTATTTAAGATCAAAATCATGTGCAAACTCTGATACTTTATAATTGTCACTAGATTATTATTTTACTCAAACATAATAATGATGTCTAGGAAGAATCTAATGATTCCAAAGTAAAATTTAGATTCATGAAAATCAAAATCTAAATATTTTAAGGATTTATTTGAACATACACTCAACTTTTTCATTGATAAGAGATAAAACTTTGAGCATTGTATAATGTTAGTGTATCTCTAACATTAAATTGTTACGGCCAGGTCCTCTTACAAGAAGCTTTATGAAGCATTTTCTACTTCAGCTACAACAATTTTAAACGAAGCAGAAAAAGCCGGTTTAAAAAGAAGCGAAGCCTGCCACAATATCATTTTCACCGCAGGCTTCAACGCATACGGTGGCCTAAAGAATCAATTCCCAATCCTCTTCAAATGGTTAGGTTCGTGCGGCGAAGAGATACACAAAGAACTCGCGGACGAGATAAGAACCGTGGTAAAACAAGAAGGTGGGGTAACAATTCAGTCGTTGGAAAAAATGCCGTTAGTTAAATCAGTTGTCTATGAAGCGATGCGAATTGAACCTGCTGTGCCTTATCAATATGCAAAAGCAAGAGAGGATTTAATTGTGAAGAGTCATGACGCGGCTTTTGAGATAAAAAAGGGTGAAATGATATTTGGATACCAACCTTTCGCCACAAAAGATCCTAGGGTTTTCGATGATCCTGAGGTTTTTGTGGCGAAAAGGTTTGTTGGGGAAGGTGCGAAGTTGTTGAAGTATGTTTTGTGGTCTAATGGGAAAGAAACTGAAGAGCCTTCAGCGGAGAATAAGCAATGTCCTGGGAAGAATCTTGTTGTGCTTTTGTGTAGATTGTTATTGGTGGAGTTTTTCTTGCGTTATGATACTTTTGAGATTGAGACTAAAAATGTTGCTTTTGGTGCTTCTGTTACCATTACTTCACTCACCAAGGCTTCTAGTGTTTGA

Protein sequence

>MS.gene061044.t1

MASSKQEQSSTNKELPLKQIPGSYGLPFIGPIFDRHDYFYNQGRDKFFSTRIQKYNSTIFRTNMPPGPFISSNPRVIALLDAASFPILFDNKKVEKLNVLDGTYMPSTKFTGGYRVCAYLDTTEPNHALIKGFYLNTLLLRKDSFIPLFKTILSDGFNEIDDGLSGKSGKADFNSIMSVASFNFMFKLFCDNKNPSETILGDQGPKMFDTWLLFQLAPLATLGPPKIFNYLEDILLRTVPFPACLTRSSYKKLYEAFSTSATTILNEAEKAGLKRSEACHNIIFTAGFNAYGGLKNQFPILFKWLGSCGEEIHKELADEIRTVVKQEGGVTIQSLEKMPLVKSVVYEAMRIEPAVPYQYAKAREDLIVKSHDAAFEIKKGEMIFGYQPFATKDPRVFDDPEVFVAKRFVGEGAKLLKYVLWSNGKETEEPSAENKQCPGKNLVVLLCRLLLVEFFLRYDTFEIETKNVAFGASVTITSLTKASSV