Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20826.t1 | XP_003591397.1 | 96.9 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 6.20E-181 | 643.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20826.t1 | G7ICX7 | 96.9 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 4.5e-181 | 643.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053144 | MS.gene20826 | 0.815399 | 9.43E-52 | -1.69E-46 |
| MS.gene060519 | MS.gene20826 | 0.805272 | 1.45E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20826.t1 | MTR_1g086990 | 96.942 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 0.0 | 651 |
| MS.gene20826.t1 | MTR_3g096580 | 92.135 | 89 | 7 | 0 | 239 | 327 | 9 | 97 | 2.41e-51 | 166 |
| MS.gene20826.t1 | MTR_3g096562 | 91.860 | 86 | 7 | 0 | 242 | 327 | 62 | 147 | 8.67e-47 | 162 |
| MS.gene20826.t1 | MTR_7g020840 | 32.616 | 279 | 168 | 10 | 37 | 307 | 35 | 301 | 1.15e-30 | 119 |
| MS.gene20826.t1 | MTR_1g030760 | 32.215 | 298 | 178 | 10 | 15 | 302 | 14 | 297 | 1.83e-28 | 113 |
| MS.gene20826.t1 | MTR_6g021910 | 33.333 | 279 | 162 | 11 | 37 | 302 | 34 | 301 | 4.71e-27 | 110 |
| MS.gene20826.t1 | MTR_3g070770 | 29.893 | 281 | 166 | 11 | 55 | 307 | 6 | 283 | 3.36e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20826.t1 | AT2G16760 | 64.939 | 328 | 104 | 8 | 6 | 327 | 5 | 327 | 3.86e-142 | 405 |
| MS.gene20826.t1 | AT2G47370 | 60.597 | 335 | 119 | 8 | 1 | 327 | 1 | 330 | 2.64e-134 | 385 |
| MS.gene20826.t1 | AT2G47370 | 59.286 | 280 | 103 | 6 | 1 | 273 | 1 | 276 | 3.40e-108 | 317 |
| MS.gene20826.t1 | AT5G28660 | 46.377 | 207 | 66 | 4 | 67 | 273 | 5 | 166 | 1.09e-45 | 153 |
| MS.gene20826.t1 | AT2G01410 | 30.032 | 313 | 184 | 12 | 4 | 300 | 15 | 308 | 8.04e-25 | 103 |
Find 81 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTCTTACTCAACTTTC+TGG | 0.113429 | 1.4:-69361737 | MS.gene20826:CDS |
| AAAACATTGGTTGGCCTTAA+TGG | 0.152759 | 1.4:-69359360 | MS.gene20826:CDS |
| AAGAGAATGGCGAGGAATTT+TGG | 0.197496 | 1.4:+69362127 | None:intergenic |
| CCAGCAACCACAACCTTATT+AGG | 0.208425 | 1.4:+69359186 | None:intergenic |
| ATTGGAGGGCCACTTTATTT+TGG | 0.228396 | 1.4:-69359231 | MS.gene20826:CDS |
| GTGAAGATAATTAAGGTTAT+TGG | 0.247604 | 1.4:-69359249 | MS.gene20826:CDS |
| CCTAATAAGGTTGTGGTTGC+TGG | 0.247906 | 1.4:-69359186 | MS.gene20826:CDS |
| CATCCCCAACGACGCATTTC+CGG | 0.257835 | 1.4:+69361862 | None:intergenic |
| AGATTAGTGGAGAGTTTAGA+TGG | 0.265703 | 1.4:-69359150 | MS.gene20826:CDS |
| AGAGTTATTGTCTCCTAATA+AGG | 0.268390 | 1.4:-69359199 | MS.gene20826:CDS |
| CCGGAGTAGGAATCGGATTC+TGG | 0.291646 | 1.4:-69361831 | MS.gene20826:CDS |
| GTGGTTGCTGGAAATCCTTC+AGG | 0.294870 | 1.4:-69359174 | MS.gene20826:CDS |
| CAAGTAAAATATGGAAAGTT+GGG | 0.299945 | 1.4:-69359443 | MS.gene20826:CDS |
| CAATTCCAACCATATGGTTT+AGG | 0.317125 | 1.4:+69359040 | None:intergenic |
| ATGTAAAAGCAAGTAAAATA+TGG | 0.332923 | 1.4:-69359452 | MS.gene20826:CDS |
| AGAGGAAGTGAAGATAATTA+AGG | 0.344563 | 1.4:-69359256 | MS.gene20826:CDS |
| CTAAACCATATGGTTGGAAT+TGG | 0.352983 | 1.4:-69359039 | MS.gene20826:CDS |
| TTGGCCGGAAATGCGTCGTT+GGG | 0.356790 | 1.4:-69361866 | MS.gene20826:CDS |
| TCGGTTGTTGCAAAATTCTC+AGG | 0.364403 | 1.4:-69359114 | MS.gene20826:CDS |
| GCAAGTAAAATATGGAAAGT+TGG | 0.367402 | 1.4:-69359444 | MS.gene20826:CDS |
| GGTGGTAAACAATTCCATTA+AGG | 0.371380 | 1.4:+69359346 | None:intergenic |
| CTCAGGGCCTAAACATCGTT+TGG | 0.372687 | 1.4:-69359097 | MS.gene20826:CDS |
| ATATGGAAAGTTGGGGTTGA+TGG | 0.388063 | 1.4:-69359435 | MS.gene20826:CDS |
| GGTATCCAATTCCAACCATA+TGG | 0.404384 | 1.4:+69359034 | None:intergenic |
| ATTACTATTAAGAATCCATC+TGG | 0.406971 | 1.4:+69359324 | None:intergenic |
| TATGGAAAGTTGGGGTTGAT+GGG | 0.450804 | 1.4:-69359434 | MS.gene20826:CDS |
| CGATTGACCGGAGTAGGAAT+CGG | 0.459191 | 1.4:-69361838 | MS.gene20826:CDS |
| TAGTGGAGAGTTTAGATGGA+TGG | 0.469672 | 1.4:-69359146 | MS.gene20826:CDS |
| TCTTCCAATACTGTTCCCTC+TGG | 0.482175 | 1.4:+69361914 | None:intergenic |
| AGATGGATGGAATACAGCTT+CGG | 0.484091 | 1.4:-69359133 | MS.gene20826:CDS |
| ATCACCAGAGGGAACAGTAT+TGG | 0.485188 | 1.4:-69361918 | MS.gene20826:CDS |
| GTTGTAAACGCTGATGTTAG+AGG | 0.486804 | 1.4:-69361809 | MS.gene20826:CDS |
| AAATCCTTCAGGGAGATTAG+TGG | 0.494271 | 1.4:-69359163 | MS.gene20826:CDS |
| GTTGGCCGGAAATGCGTCGT+TGG | 0.505279 | 1.4:-69361867 | MS.gene20826:CDS |
| AATCCATCTCCAAAATAAAG+TGG | 0.505424 | 1.4:+69359222 | None:intergenic |
| CGGTTGTTGCAAAATTCTCA+GGG | 0.508725 | 1.4:-69359113 | MS.gene20826:CDS |
| CACTATTCACTCCAAAAGAA+TGG | 0.508816 | 1.4:-69359386 | MS.gene20826:CDS |
| GATTGATTTAACACAGGGAG+AGG | 0.526887 | 1.4:-69359274 | MS.gene20826:CDS |
| GAAAGTGTACCTAAACCATA+TGG | 0.527065 | 1.4:-69359049 | MS.gene20826:CDS |
| AAGATAATTAAGGTTATTGG+AGG | 0.528555 | 1.4:-69359246 | MS.gene20826:CDS |
| GATGATTATGCCGATGGGTA+TGG | 0.529205 | 1.4:+69362093 | None:intergenic |
| TGGTTGCTGGAAATCCTTCA+GGG | 0.530888 | 1.4:-69359173 | MS.gene20826:CDS |
| CTGAAAGAAACGGAGTTGGC+CGG | 0.532209 | 1.4:-69361881 | MS.gene20826:CDS |
| TTTCAGAGAATGTGCAAAGT+GGG | 0.535552 | 1.4:-69362014 | MS.gene20826:CDS |
| AAGAGAGATGATTATGCCGA+TGG | 0.536931 | 1.4:+69362087 | None:intergenic |
| GGAATTGTTTACCACCCAGA+TGG | 0.538287 | 1.4:-69359339 | MS.gene20826:CDS |
| TAGTGATAGACGTGAGTTGA+GGG | 0.540159 | 1.4:+69362052 | None:intergenic |
| ATTGTCTCCTAATAAGGTTG+TGG | 0.545717 | 1.4:-69359193 | MS.gene20826:CDS |
| CCAGAATCCGATTCCTACTC+CGG | 0.552410 | 1.4:+69361831 | None:intergenic |
| AGTGACTGTTCTGAAAGAAA+CGG | 0.554947 | 1.4:-69361891 | MS.gene20826:CDS |
| CAGAAAGTTGAGTAAGAAAG+AGG | 0.557479 | 1.4:+69361738 | None:intergenic |
| GAATGGCACAAAACATTGGT+TGG | 0.557627 | 1.4:-69359369 | MS.gene20826:CDS |
| AACTGCAACATCGTCTGCAA+AGG | 0.560005 | 1.4:+69359503 | None:intergenic |
| GATGTAGCCAAACGATGTTT+AGG | 0.562054 | 1.4:+69359090 | None:intergenic |
| AAAAGAATGGCACAAAACAT+TGG | 0.562268 | 1.4:-69359373 | MS.gene20826:CDS |
| GGCTGTGAAGAGGAAGAGAA+TGG | 0.566959 | 1.4:+69362114 | None:intergenic |
| CTCTCCACTAATCTCCCTGA+AGG | 0.567971 | 1.4:+69359159 | None:intergenic |
| GTTCAAGATTGATTTAACAC+AGG | 0.568807 | 1.4:-69359280 | MS.gene20826:CDS |
| ACATCAGCTACTGTGAAGGA+TGG | 0.570230 | 1.4:-69359072 | MS.gene20826:CDS |
| CTCTTCACAGCCATACCCAT+CGG | 0.579141 | 1.4:-69362103 | MS.gene20826:CDS |
| TTCAAGATTGATTTAACACA+GGG | 0.581645 | 1.4:-69359279 | MS.gene20826:CDS |
| CATCAGCTACTGTGAAGGAT+GGG | 0.589586 | 1.4:-69359071 | MS.gene20826:CDS |
| CGTTGGGGATGACGATTGAC+CGG | 0.594121 | 1.4:-69361850 | MS.gene20826:CDS |
| GTGTACCTAAACCATATGGT+TGG | 0.595572 | 1.4:-69359045 | MS.gene20826:CDS |
| AATCGGTCAAATTTCCGTAC+CGG | 0.599124 | 1.4:-69361948 | MS.gene20826:CDS |
| AAAGAAGCATGCTATTGTTG+AGG | 0.609816 | 1.4:-69359007 | MS.gene20826:CDS |
| TGTTCTGAAAGAAACGGAGT+TGG | 0.613305 | 1.4:-69361885 | MS.gene20826:CDS |
| GTCTATCACTATCACAGCAA+AGG | 0.614577 | 1.4:-69362040 | MS.gene20826:CDS |
| GGCTACATCAGCTACTGTGA+AGG | 0.617487 | 1.4:-69359076 | MS.gene20826:CDS |
| AAGTAAAATATGGAAAGTTG+GGG | 0.624724 | 1.4:-69359442 | MS.gene20826:CDS |
| AGAGAGATGATTATGCCGAT+GGG | 0.637293 | 1.4:+69362088 | None:intergenic |
| TGGCCGGAAATGCGTCGTTG+GGG | 0.638022 | 1.4:-69361865 | MS.gene20826:CDS |
| GGATGACGATTGACCGGAGT+AGG | 0.649044 | 1.4:-69361844 | MS.gene20826:CDS |
| TTACTATTAAGAATCCATCT+GGG | 0.651021 | 1.4:+69359325 | None:intergenic |
| GATGTTGCAGTTGATGCAGA+AGG | 0.659638 | 1.4:-69359492 | MS.gene20826:CDS |
| CGATGGGTATGGCTGTGAAG+AGG | 0.679741 | 1.4:+69362104 | None:intergenic |
| AGATAATTAAGGTTATTGGA+GGG | 0.679870 | 1.4:-69359245 | MS.gene20826:CDS |
| TGAAGAGGAAGAGAATGGCG+AGG | 0.681971 | 1.4:+69362119 | None:intergenic |
| ATAGTGATAGACGTGAGTTG+AGG | 0.689700 | 1.4:+69362051 | None:intergenic |
| CTATTAAGAATCCATCTGGG+TGG | 0.712337 | 1.4:+69359328 | None:intergenic |
| TTGCTTATGATCTTTCTACG+TGG | 0.722273 | 1.4:-69361766 | MS.gene20826:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATATTAATTTCTAATTTA+TGG | - | chr1.4:69361484-69361503 | MS.gene20826:intron | 10.0% |
| !! | TTAATAATTCAATATAAGAT+GGG | - | chr1.4:69360715-69360734 | MS.gene20826:intron | 10.0% |
| !! | TTTAATAATTCAATATAAGA+TGG | - | chr1.4:69360714-69360733 | MS.gene20826:intron | 10.0% |
| !!! | AAATTATAAGTCTTTTTTTT+GGG | + | chr1.4:69359892-69359911 | None:intergenic | 10.0% |
| !!! | ATCAAGTTTTTTATATAAAT+TGG | + | chr1.4:69359584-69359603 | None:intergenic | 10.0% |
| !!! | TAAATTATAAGTCTTTTTTT+TGG | + | chr1.4:69359893-69359912 | None:intergenic | 10.0% |
| !!! | TCAAGTTTTTTATATAAATT+GGG | + | chr1.4:69359583-69359602 | None:intergenic | 10.0% |
| !!! | TCATTTACTTTTTTTTTTTT+TGG | + | chr1.4:69360439-69360458 | None:intergenic | 10.0% |
| !!! | TTTGAATTAGTTATTTATTT+TGG | + | chr1.4:69359981-69360000 | None:intergenic | 10.0% |
| !!! | TTTTCATATATATAAAACAA+CGG | + | chr1.4:69361130-69361149 | None:intergenic | 10.0% |
| !! | AAGTTGTTTATAAATATGAT+CGG | + | chr1.4:69361213-69361232 | None:intergenic | 15.0% |
| !! | ATATAAAAAACTTGATGTAA+AGG | - | chr1.4:69359588-69359607 | MS.gene20826:intron | 15.0% |
| !! | TAAATAATTGAGTCAAAAAT+TGG | + | chr1.4:69361588-69361607 | None:intergenic | 15.0% |
| !! | TAGTAAATAAAGTCTAAATA+AGG | + | chr1.4:69361105-69361124 | None:intergenic | 15.0% |
| !! | TTGACTCAATTATTTAATAT+TGG | - | chr1.4:69361592-69361611 | MS.gene20826:intron | 15.0% |
| !!! | AAAGACTTATAATTTAAGAT+AGG | - | chr1.4:69359897-69359916 | MS.gene20826:intron | 15.0% |
| !!! | AAGACTTATAATTTAAGATA+GGG | - | chr1.4:69359898-69359917 | MS.gene20826:intron | 15.0% |
| !!! | CTTTATTTAATGAATCTAAA+AGG | - | chr1.4:69361295-69361314 | MS.gene20826:intron | 15.0% |
| !!! | CTTTTAGATTCATTAAATAA+AGG | + | chr1.4:69361297-69361316 | None:intergenic | 15.0% |
| !!! | CTTTTAGATTCATTAAATAA+CGG | + | chr1.4:69361297-69361316 | None:intergenic | 15.0% |
| !!! | TTTGTAGATCTTTTTTTTTT+TGG | - | chr1.4:69360218-69360237 | MS.gene20826:intron | 15.0% |
| !! | AATGAAATGAAAATAAGAGA+GGG | + | chr1.4:69359696-69359715 | None:intergenic | 20.0% |
| !! | ATGTAAAAGCAAGTAAAATA+TGG | - | chr1.4:69361695-69361714 | MS.gene20826:intron | 20.0% |
| !! | CCTAAAAACATGAATATATT+CGG | + | chr1.4:69359532-69359551 | None:intergenic | 20.0% |
| !! | CGTTATTTAATGAATCTAAA+AGG | - | chr1.4:69361343-69361362 | MS.gene20826:intron | 20.0% |
| !! | TAATGAAATGAAAATAAGAG+AGG | + | chr1.4:69359697-69359716 | None:intergenic | 20.0% |
| !! | TAATTTATGGTGATATTGTT+GGG | - | chr1.4:69361497-69361516 | MS.gene20826:intron | 20.0% |
| !! | TAGTAAAATGTGAAAACAAT+TGG | - | chr1.4:69361024-69361043 | MS.gene20826:intron | 20.0% |
| !! | TTGGAACAGTTAAAAAAATA+TGG | - | chr1.4:69361043-69361062 | MS.gene20826:intron | 20.0% |
| !! | TTTAATATTGTACATGCATA+TGG | - | chr1.4:69360597-69360616 | MS.gene20826:intron | 20.0% |
| !!! | ATATGTTTAGAATTGTCAAA+TGG | - | chr1.4:69359787-69359806 | MS.gene20826:intron | 20.0% |
| !!! | CGAATATATTCATGTTTTTA+GGG | - | chr1.4:69359530-69359549 | MS.gene20826:intron | 20.0% |
| !!! | GTTTTTTATATAAATTGGGA+CGG | + | chr1.4:69359579-69359598 | None:intergenic | 20.0% |
| ! | AAGATAATTAAGGTTATTGG+AGG | - | chr1.4:69361901-69361920 | MS.gene20826:CDS | 25.0% |
| ! | AAGTAAAATATGGAAAGTTG+GGG | - | chr1.4:69361705-69361724 | MS.gene20826:intron | 25.0% |
| ! | AGATAATTAAGGTTATTGGA+GGG | - | chr1.4:69361902-69361921 | MS.gene20826:CDS | 25.0% |
| ! | ATAAGATGACATTGAATGAT+TGG | + | chr1.4:69359649-69359668 | None:intergenic | 25.0% |
| ! | ATATCGGTGAAATTAAATTC+AGG | - | chr1.4:69360046-69360065 | MS.gene20826:intron | 25.0% |
| ! | ATTACTATTAAGAATCCATC+TGG | + | chr1.4:69361826-69361845 | None:intergenic | 25.0% |
| ! | CAAGTAAAATATGGAAAGTT+GGG | - | chr1.4:69361704-69361723 | MS.gene20826:intron | 25.0% |
| ! | CGAAAAAAGAGTTTATGAAA+CGG | + | chr1.4:69359172-69359191 | None:intergenic | 25.0% |
| ! | CTAATTTATGGTGATATTGT+TGG | - | chr1.4:69361496-69361515 | MS.gene20826:intron | 25.0% |
| ! | GAAGAACAAAAATACTTACT+AGG | + | chr1.4:69359437-69359456 | None:intergenic | 25.0% |
| ! | GACAATGCATAATATATGTA+AGG | - | chr1.4:69359854-69359873 | MS.gene20826:intron | 25.0% |
| ! | GTGAAGATAATTAAGGTTAT+TGG | - | chr1.4:69361898-69361917 | MS.gene20826:CDS | 25.0% |
| ! | GTTGACCAAACTTTATATAT+AGG | - | chr1.4:69361407-69361426 | MS.gene20826:intron | 25.0% |
| ! | TCCAACAGATAAAAAATACT+TGG | + | chr1.4:69360465-69360484 | None:intergenic | 25.0% |
| ! | TGCATAATATATGTAAGGTT+TGG | - | chr1.4:69359859-69359878 | MS.gene20826:intron | 25.0% |
| ! | TTACTATTAAGAATCCATCT+GGG | + | chr1.4:69361825-69361844 | None:intergenic | 25.0% |
| ! | TTGTGTTGTATTGTATATCT+TGG | + | chr1.4:69360502-69360521 | None:intergenic | 25.0% |
| ! | TTGTTTATAAATATGATCGG+AGG | + | chr1.4:69361210-69361229 | None:intergenic | 25.0% |
| !! | AGGAGTTTAACATCTTTTAT+CGG | + | chr1.4:69360369-69360388 | None:intergenic | 25.0% |
| !! | ATAGTAATTCACACTTTTAG+TGG | - | chr1.4:69361838-69361857 | MS.gene20826:CDS | 25.0% |
| !! | CCGAATATATTCATGTTTTT+AGG | - | chr1.4:69359529-69359548 | MS.gene20826:intron | 25.0% |
| !! | TAAGGTTGATTGTCAAAATT+TGG | + | chr1.4:69360920-69360939 | None:intergenic | 25.0% |
| !! | TTCAAGATTGATTTAACACA+GGG | - | chr1.4:69361868-69361887 | MS.gene20826:CDS | 25.0% |
| !!! | ACCAAGTATTTTTTATCTGT+TGG | - | chr1.4:69360461-69360480 | MS.gene20826:intron | 25.0% |
| !!! | TTCATAAACTCTTTTTTCGA+AGG | - | chr1.4:69359173-69359192 | MS.gene20826:CDS | 25.0% |
| AAAAAGAGTTTATGAAACGG+TGG | + | chr1.4:69359169-69359188 | None:intergenic | 30.0% | |
| AAAAGAATGGCACAAAACAT+TGG | - | chr1.4:69361774-69361793 | MS.gene20826:CDS | 30.0% | |
| AAATACGTGTCGTGATATAT+CGG | - | chr1.4:69360030-69360049 | MS.gene20826:intron | 30.0% | |
| AACTTTATATATAGGACCAG+AGG | - | chr1.4:69361415-69361434 | MS.gene20826:intron | 30.0% | |
| AATCCATCTCCAAAATAAAG+TGG | + | chr1.4:69361928-69361947 | None:intergenic | 30.0% | |
| AGAGGAAGTGAAGATAATTA+AGG | - | chr1.4:69361891-69361910 | MS.gene20826:CDS | 30.0% | |
| AGAGTTATTGTCTCCTAATA+AGG | - | chr1.4:69361948-69361967 | MS.gene20826:CDS | 30.0% | |
| ATGTGAAAACTGAGCAATTA+AGG | + | chr1.4:69360938-69360957 | None:intergenic | 30.0% | |
| CATTCATCTGTATTCAAACT+TGG | - | chr1.4:69360107-69360126 | MS.gene20826:intron | 30.0% | |
| CTGGTCCTATATATAAAGTT+TGG | + | chr1.4:69361415-69361434 | None:intergenic | 30.0% | |
| GCAAGTAAAATATGGAAAGT+TGG | - | chr1.4:69361703-69361722 | MS.gene20826:intron | 30.0% | |
| TATCAACTGAGCTAAGTTTA+CGG | + | chr1.4:69359826-69359845 | None:intergenic | 30.0% | |
| TGCTTATAAATGTGATCAGA+GGG | - | chr1.4:69361372-69361391 | MS.gene20826:intron | 30.0% | |
| TGTAAAACAATAATCACCTC+AGG | + | chr1.4:69360156-69360175 | None:intergenic | 30.0% | |
| TTGCTTATAAATGTGATCAG+AGG | - | chr1.4:69361371-69361390 | MS.gene20826:intron | 30.0% | |
| ! | AATTGTCTTTTCCACTACAA+TGG | + | chr1.4:69360993-69361012 | None:intergenic | 30.0% |
| ! | ACAATAGCATGCTTCTTTTT+AGG | + | chr1.4:69362138-69362157 | None:intergenic | 30.0% |
| ! | CAATAGCATGCTTCTTTTTA+GGG | + | chr1.4:69362137-69362156 | None:intergenic | 30.0% |
| ! | GTTAACTCTTGTTATGTTGT+AGG | + | chr1.4:69360394-69360413 | None:intergenic | 30.0% |
| ! | GTTCAAGATTGATTTAACAC+AGG | - | chr1.4:69361867-69361886 | MS.gene20826:CDS | 30.0% |
| ! | TATGGTTGCTTTGTTATGTT+TGG | - | chr1.4:69360615-69360634 | MS.gene20826:intron | 30.0% |
| !! | AATGTTTTGTGCCATTCTTT+TGG | + | chr1.4:69361775-69361794 | None:intergenic | 30.0% |
| !! | GAGGTGATTATTGTTTTACA+TGG | - | chr1.4:69360156-69360175 | MS.gene20826:intron | 30.0% |
| !!! | ATAAACTCTTTTTTCGAAGG+TGG | - | chr1.4:69359176-69359195 | MS.gene20826:CDS | 30.0% |
| !!! | ATTCTTTTGGAGTGAATAGT+GGG | + | chr1.4:69361762-69361781 | None:intergenic | 30.0% |
| !!! | GTTCTCTTTGTTTTTATCGA+TGG | - | chr1.4:69360818-69360837 | MS.gene20826:intron | 30.0% |
| AAAGAGAACAATAAACGTGC+AGG | + | chr1.4:69360807-69360826 | None:intergenic | 35.0% | |
| AGATTAGTGGAGAGTTTAGA+TGG | - | chr1.4:69361997-69362016 | MS.gene20826:CDS | 35.0% | |
| ATCAACTGAGCTAAGTTTAC+GGG | + | chr1.4:69359825-69359844 | None:intergenic | 35.0% | |
| ATTGTCTCCTAATAAGGTTG+TGG | - | chr1.4:69361954-69361973 | MS.gene20826:CDS | 35.0% | |
| CAACTCAACATCTAGATATG+AGG | + | chr1.4:69360893-69360912 | None:intergenic | 35.0% | |
| CAATTCCAACCATATGGTTT+AGG | + | chr1.4:69362110-69362129 | None:intergenic | 35.0% | |
| CACTATTCACTCCAAAAGAA+TGG | - | chr1.4:69361761-69361780 | MS.gene20826:CDS | 35.0% | |
| CAGAAAGTTGAGTAAGAAAG+AGG | + | chr1.4:69359412-69359431 | None:intergenic | 35.0% | |
| CTAAACCATATGGTTGGAAT+TGG | - | chr1.4:69362108-69362127 | MS.gene20826:CDS | 35.0% | |
| CTATATTGAAATGTGCTAGC+TGG | - | chr1.4:69361536-69361555 | MS.gene20826:intron | 35.0% | |
| CTCTTTCTTACTCAACTTTC+TGG | - | chr1.4:69359410-69359429 | MS.gene20826:CDS | 35.0% | |
| GATGTAAAGGAGAGTTTAGT+TGG | - | chr1.4:69359601-69359620 | MS.gene20826:intron | 35.0% | |
| GCATGGTGTGCATATTATAT+GGG | + | chr1.4:69360780-69360799 | None:intergenic | 35.0% | |
| GGTGGTAAACAATTCCATTA+AGG | + | chr1.4:69361804-69361823 | None:intergenic | 35.0% | |
| TGAAAACGTGAAGACTAACA+TGG | - | chr1.4:69360323-69360342 | MS.gene20826:intron | 35.0% | |
| TGCATGGTGTGCATATTATA+TGG | + | chr1.4:69360781-69360800 | None:intergenic | 35.0% | |
| TTGCTTATGATCTTTCTACG+TGG | - | chr1.4:69359381-69359400 | MS.gene20826:CDS | 35.0% | |
| TTTCAGAGAATGTGCAAAGT+GGG | - | chr1.4:69359133-69359152 | MS.gene20826:CDS | 35.0% | |
| ! | AAAGAAGCATGCTATTGTTG+AGG | - | chr1.4:69362140-69362159 | MS.gene20826:CDS | 35.0% |
| ! | AAGGAGAGTTTAGTTGGTAT+TGG | - | chr1.4:69359607-69359626 | MS.gene20826:intron | 35.0% |
| ! | CTCTAGAAGGTTAAAGACAA+AGG | - | chr1.4:69361456-69361475 | MS.gene20826:intron | 35.0% |
| ! | CTCTTGTTATGTTGTAGGAT+AGG | + | chr1.4:69360389-69360408 | None:intergenic | 35.0% |
| ! | GAAAGTGTACCTAAACCATA+TGG | - | chr1.4:69362098-69362117 | MS.gene20826:CDS | 35.0% |
| ! | TTATGTTTGGAGCGTAGTAA+AGG | - | chr1.4:69360628-69360647 | MS.gene20826:intron | 35.0% |
| ! | TTTTCAGAGAATGTGCAAAG+TGG | - | chr1.4:69359132-69359151 | MS.gene20826:CDS | 35.0% |
| !! | AAAACATTGGTTGGCCTTAA+TGG | - | chr1.4:69361787-69361806 | MS.gene20826:CDS | 35.0% |
| !! | AATGTTAACTTGTGCGCTTA+AGG | - | chr1.4:69360739-69360758 | MS.gene20826:intron | 35.0% |
| !! | AGTGACTGTTCTGAAAGAAA+CGG | - | chr1.4:69359256-69359275 | MS.gene20826:CDS | 35.0% |
| !!! | CATTCTTTTGGAGTGAATAG+TGG | + | chr1.4:69361763-69361782 | None:intergenic | 35.0% |
| !!! | TCTTTTTTCGAAGGTGGAAT+CGG | - | chr1.4:69359182-69359201 | MS.gene20826:CDS | 35.0% |
| AAATCCTTCAGGGAGATTAG+TGG | - | chr1.4:69361984-69362003 | MS.gene20826:CDS | 40.0% | |
| AAGAGAGATGATTATGCCGA+TGG | + | chr1.4:69359063-69359082 | None:intergenic | 40.0% | |
| AAGTGTGTGTAAGTTTCCTG+AGG | - | chr1.4:69360137-69360156 | MS.gene20826:intron | 40.0% | |
| AATCGGTCAAATTTCCGTAC+CGG | - | chr1.4:69359199-69359218 | MS.gene20826:CDS | 40.0% | |
| AGAGAGATGATTATGCCGAT+GGG | + | chr1.4:69359062-69359081 | None:intergenic | 40.0% | |
| AGATGGATGGAATACAGCTT+CGG | - | chr1.4:69362014-69362033 | MS.gene20826:CDS | 40.0% | |
| ATAGTGATAGACGTGAGTTG+AGG | + | chr1.4:69359099-69359118 | None:intergenic | 40.0% | |
| ATATGGAAAGTTGGGGTTGA+TGG | - | chr1.4:69361712-69361731 | MS.gene20826:intron | 40.0% | |
| ATTAAGTAGCCAGTATCCCA+TGG | + | chr1.4:69360557-69360576 | None:intergenic | 40.0% | |
| CAGAGCTTTCATGAATCGAA+AGG | + | chr1.4:69360853-69360872 | None:intergenic | 40.0% | |
| CGGTTGTTGCAAAATTCTCA+GGG | - | chr1.4:69362034-69362053 | MS.gene20826:CDS | 40.0% | |
| CTATTAAGAATCCATCTGGG+TGG | + | chr1.4:69361822-69361841 | None:intergenic | 40.0% | |
| GAATGGCACAAAACATTGGT+TGG | - | chr1.4:69361778-69361797 | MS.gene20826:CDS | 40.0% | |
| GATGTAGCCAAACGATGTTT+AGG | + | chr1.4:69362060-69362079 | None:intergenic | 40.0% | |
| GGTATCCAATTCCAACCATA+TGG | + | chr1.4:69362116-69362135 | None:intergenic | 40.0% | |
| GTCTATCACTATCACAGCAA+AGG | - | chr1.4:69359107-69359126 | MS.gene20826:CDS | 40.0% | |
| GTGTACCTAAACCATATGGT+TGG | - | chr1.4:69362102-69362121 | MS.gene20826:CDS | 40.0% | |
| GTTGTAAACGCTGATGTTAG+AGG | - | chr1.4:69359338-69359357 | MS.gene20826:CDS | 40.0% | |
| TAGTGGAGAGTTTAGATGGA+TGG | - | chr1.4:69362001-69362020 | MS.gene20826:CDS | 40.0% | |
| TCGATTCATGAAAGCTCTGT+AGG | - | chr1.4:69360854-69360873 | MS.gene20826:intron | 40.0% | |
| TCGGTTGTTGCAAAATTCTC+AGG | - | chr1.4:69362033-69362052 | MS.gene20826:CDS | 40.0% | |
| TCTCATCACCTGCATTGAAT+GGG | + | chr1.4:69361621-69361640 | None:intergenic | 40.0% | |
| TTCTCATCACCTGCATTGAA+TGG | + | chr1.4:69361622-69361641 | None:intergenic | 40.0% | |
| ! | AAGAGAATGGCGAGGAATTT+TGG | + | chr1.4:69359023-69359042 | None:intergenic | 40.0% |
| ! | CCTATTGGTTGAACTCTAGA+AGG | - | chr1.4:69361443-69361462 | MS.gene20826:intron | 40.0% |
| ! | GATTGATTTAACACAGGGAG+AGG | - | chr1.4:69361873-69361892 | MS.gene20826:CDS | 40.0% |
| ! | TAGTGATAGACGTGAGTTGA+GGG | + | chr1.4:69359098-69359117 | None:intergenic | 40.0% |
| ! | TATGGAAAGTTGGGGTTGAT+GGG | - | chr1.4:69361713-69361732 | MS.gene20826:intron | 40.0% |
| ! | TGGTGATTCTTTTTCCGGTA+CGG | + | chr1.4:69359216-69359235 | None:intergenic | 40.0% |
| !! | ATTGGAGGGCCACTTTATTT+TGG | - | chr1.4:69361916-69361935 | MS.gene20826:CDS | 40.0% |
| !! | CCTTCTAGAGTTCAACCAAT+AGG | + | chr1.4:69361446-69361465 | None:intergenic | 40.0% |
| !! | TGTTCTGAAAGAAACGGAGT+TGG | - | chr1.4:69359262-69359281 | MS.gene20826:CDS | 40.0% |
| AACTGCAACATCGTCTGCAA+AGG | + | chr1.4:69361647-69361666 | None:intergenic | 45.0% | |
| AAGGCCAGCGATATGAAGAA+CGG | - | chr1.4:69360647-69360666 | MS.gene20826:intron | 45.0% | |
| ACATCAGCTACTGTGAAGGA+TGG | - | chr1.4:69362075-69362094 | MS.gene20826:CDS | 45.0% | |
| ACCGGAAAAAGAATCACCAG+AGG | - | chr1.4:69359217-69359236 | MS.gene20826:CDS | 45.0% | |
| ATAAACGTGCAGGTCATGCA+TGG | + | chr1.4:69360797-69360816 | None:intergenic | 45.0% | |
| ATCACCAGAGGGAACAGTAT+TGG | - | chr1.4:69359229-69359248 | MS.gene20826:CDS | 45.0% | |
| CAACCAATAGGTAGTACCTC+TGG | + | chr1.4:69361434-69361453 | None:intergenic | 45.0% | |
| CATCAGCTACTGTGAAGGAT+GGG | - | chr1.4:69362076-69362095 | MS.gene20826:CDS | 45.0% | |
| CCAGCAACCACAACCTTATT+AGG | + | chr1.4:69361964-69361983 | None:intergenic | 45.0% | |
| CCGGAAAAAGAATCACCAGA+GGG | - | chr1.4:69359218-69359237 | MS.gene20826:CDS | 45.0% | |
| CCTAATAAGGTTGTGGTTGC+TGG | - | chr1.4:69361961-69361980 | MS.gene20826:CDS | 45.0% | |
| CGTTTCAAGCACCATTGTAG+TGG | - | chr1.4:69360979-69360998 | MS.gene20826:intron | 45.0% | |
| CTAACATGGACCAAGCTACA+TGG | - | chr1.4:69360337-69360356 | MS.gene20826:intron | 45.0% | |
| CTCATCACCTGCATTGAATG+GGG | + | chr1.4:69361620-69361639 | None:intergenic | 45.0% | |
| GATGATTATGCCGATGGGTA+TGG | + | chr1.4:69359057-69359076 | None:intergenic | 45.0% | |
| GGAATTGTTTACCACCCAGA+TGG | - | chr1.4:69361808-69361827 | MS.gene20826:CDS | 45.0% | |
| TATCCCATGGTGCAAGTGAT+TGG | + | chr1.4:69360544-69360563 | None:intergenic | 45.0% | |
| TCTTCCAATACTGTTCCCTC+TGG | + | chr1.4:69359236-69359255 | None:intergenic | 45.0% | |
| TGGTTGCTGGAAATCCTTCA+GGG | - | chr1.4:69361974-69361993 | MS.gene20826:CDS | 45.0% | |
| ! | ATTGGTTCCCCATTCAATGC+AGG | - | chr1.4:69361610-69361629 | MS.gene20826:intron | 45.0% |
| ! | CCCTCTGGTGATTCTTTTTC+CGG | + | chr1.4:69359221-69359240 | None:intergenic | 45.0% |
| ! | GATGTTGCAGTTGATGCAGA+AGG | - | chr1.4:69361655-69361674 | MS.gene20826:intron | 45.0% |
| !! | ATGAAGAACGGCATCGACAA+AGG | - | chr1.4:69360659-69360678 | MS.gene20826:intron | 45.0% |
| !!! | GGGCCACTTTATTTTGGAGA+TGG | - | chr1.4:69361922-69361941 | MS.gene20826:CDS | 45.0% |
| !!! | TATATTAATAATTTTATGTT+AGG | - | chr1.4:69359925-69359944 | MS.gene20826:intron | 5.0% |
| CCAGAATCCGATTCCTACTC+CGG | + | chr1.4:69359319-69359338 | None:intergenic | 50.0% | |
| CGATTGACCGGAGTAGGAAT+CGG | - | chr1.4:69359309-69359328 | MS.gene20826:CDS | 50.0% | |
| CTCAGGGCCTAAACATCGTT+TGG | - | chr1.4:69362050-69362069 | MS.gene20826:CDS | 50.0% | |
| CTCTCCACTAATCTCCCTGA+AGG | + | chr1.4:69361991-69362010 | None:intergenic | 50.0% | |
| CTCTTCACAGCCATACCCAT+CGG | - | chr1.4:69359044-69359063 | MS.gene20826:CDS | 50.0% | |
| CTGAAAGAAACGGAGTTGGC+CGG | - | chr1.4:69359266-69359285 | MS.gene20826:CDS | 50.0% | |
| GATGCCGTTCTTCATATCGC+TGG | + | chr1.4:69360654-69360673 | None:intergenic | 50.0% | |
| GCACCAATCACTTGCACCAT+GGG | - | chr1.4:69360538-69360557 | MS.gene20826:intron | 50.0% | |
| GGCTACATCAGCTACTGTGA+AGG | - | chr1.4:69362071-69362090 | MS.gene20826:CDS | 50.0% | |
| GGCTGTGAAGAGGAAGAGAA+TGG | + | chr1.4:69359036-69359055 | None:intergenic | 50.0% | |
| GTGGTTGCTGGAAATCCTTC+AGG | - | chr1.4:69361973-69361992 | MS.gene20826:CDS | 50.0% | |
| TCACTTGCACCATGGGATAC+TGG | - | chr1.4:69360545-69360564 | MS.gene20826:intron | 50.0% | |
| TCGGACTCAACCATGTAGCT+TGG | + | chr1.4:69360350-69360369 | None:intergenic | 50.0% | |
| TGAAGAGGAAGAGAATGGCG+AGG | + | chr1.4:69359031-69359050 | None:intergenic | 50.0% | |
| TGCACCAATCACTTGCACCA+TGG | - | chr1.4:69360537-69360556 | MS.gene20826:intron | 50.0% | |
| !! | GGACCAGAGGTACTACCTAT+TGG | - | chr1.4:69361428-69361447 | MS.gene20826:intron | 50.0% |
| CATCCCCAACGACGCATTTC+CGG | + | chr1.4:69359288-69359307 | None:intergenic | 55.0% | |
| CCGGAGTAGGAATCGGATTC+TGG | - | chr1.4:69359316-69359335 | MS.gene20826:CDS | 55.0% | |
| CGATGGGTATGGCTGTGAAG+AGG | + | chr1.4:69359046-69359065 | None:intergenic | 55.0% | |
| CGTTGGGGATGACGATTGAC+CGG | - | chr1.4:69359297-69359316 | MS.gene20826:CDS | 55.0% | |
| GGATGACGATTGACCGGAGT+AGG | - | chr1.4:69359303-69359322 | MS.gene20826:CDS | 55.0% | |
| TTGGCCGGAAATGCGTCGTT+GGG | - | chr1.4:69359281-69359300 | MS.gene20826:CDS | 55.0% | |
| GTTGGCCGGAAATGCGTCGT+TGG | - | chr1.4:69359280-69359299 | MS.gene20826:CDS | 60.0% | |
| TGGCCGGAAATGCGTCGTTG+GGG | - | chr1.4:69359282-69359301 | MS.gene20826:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 69358996 | 69362173 | 69358996 | ID=MS.gene20826 |
| chr1.4 | mRNA | 69358996 | 69362173 | 69358996 | ID=MS.gene20826.t1;Parent=MS.gene20826 |
| chr1.4 | exon | 69361732 | 69362173 | 69361732 | ID=MS.gene20826.t1.exon1;Parent=MS.gene20826.t1 |
| chr1.4 | CDS | 69361732 | 69362173 | 69361732 | ID=cds.MS.gene20826.t1;Parent=MS.gene20826.t1 |
| chr1.4 | exon | 69358996 | 69359537 | 69358996 | ID=MS.gene20826.t1.exon2;Parent=MS.gene20826.t1 |
| chr1.4 | CDS | 69358996 | 69359537 | 69358996 | ID=cds.MS.gene20826.t1;Parent=MS.gene20826.t1 |
| Gene Sequence |
| Protein sequence |
