Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20843.t1 | XP_003591424.1 | 88.8 | 1352 | 144 | 5 | 1 | 1350 | 1 | 1346 | 0.00E+00 | 2317 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20843.t1 | O04251 | 34.5 | 1354 | 635 | 39 | 9 | 1149 | 10 | 1324 | 1.7e-156 | 555.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20843.t1 | G7IDS4 | 88.8 | 1352 | 144 | 5 | 1 | 1350 | 1 | 1346 | 0.0e+00 | 2317.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene20843.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04985 | MS.gene20843 | 0.840168 | 1.02E-57 | -1.69E-46 |
| MS.gene049989 | MS.gene20843 | 0.822834 | 1.92E-53 | -1.69E-46 |
| MS.gene050297 | MS.gene20843 | 0.835214 | 1.91E-56 | -1.69E-46 |
| MS.gene050648 | MS.gene20843 | 0.821035 | 5.00E-53 | -1.69E-46 |
| MS.gene051629 | MS.gene20843 | 0.804344 | 2.26E-49 | -1.69E-46 |
| MS.gene059300 | MS.gene20843 | 0.833682 | 4.64E-56 | -1.69E-46 |
| MS.gene059778 | MS.gene20843 | 0.811744 | 6.01E-51 | -1.69E-46 |
| MS.gene06057 | MS.gene20843 | 0.806333 | 8.66E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20843.t1 | MTR_1g087290 | 92.160 | 1352 | 98 | 5 | 1 | 1350 | 1 | 1346 | 0.0 | 2516 |
| MS.gene20843.t1 | MTR_1g087290 | 92.794 | 1249 | 82 | 5 | 1 | 1247 | 1 | 1243 | 0.0 | 2330 |
| MS.gene20843.t1 | MTR_1g087290 | 81.132 | 106 | 18 | 1 | 1247 | 1350 | 1138 | 1243 | 1.54e-48 | 190 |
| MS.gene20843.t1 | MTR_6g016895 | 36.458 | 96 | 58 | 3 | 111 | 205 | 4 | 97 | 1.05e-13 | 75.9 |
| MS.gene20843.t1 | MTR_6g016895 | 36.458 | 96 | 58 | 3 | 111 | 205 | 4 | 97 | 1.27e-13 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20843.t1 | AT4G02110 | 70.870 | 230 | 66 | 1 | 920 | 1149 | 967 | 1195 | 5.83e-114 | 387 |
| MS.gene20843.t1 | AT4G02110 | 67.290 | 107 | 30 | 1 | 129 | 235 | 1 | 102 | 1.16e-37 | 155 |
| MS.gene20843.t1 | AT4G02110 | 70.870 | 230 | 66 | 1 | 920 | 1149 | 1096 | 1324 | 2.00e-112 | 385 |
| MS.gene20843.t1 | AT4G02110 | 63.436 | 227 | 78 | 1 | 9 | 235 | 10 | 231 | 5.15e-89 | 317 |
| MS.gene20843.t1 | AT1G67180 | 36.792 | 106 | 57 | 4 | 109 | 206 | 2 | 105 | 1.17e-13 | 75.1 |
| MS.gene20843.t1 | AT1G67180 | 36.792 | 106 | 57 | 4 | 109 | 206 | 2 | 105 | 5.27e-13 | 73.6 |
| MS.gene20843.t1 | AT1G67180 | 36.792 | 106 | 57 | 4 | 109 | 206 | 2 | 105 | 5.27e-13 | 73.6 |
Find 307 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAGAGTCTTTACCCTTAT+TGG | 0.075467 | 1.3:+61746461 | None:intergenic |
| GTTTGGGTGCTACTGCATTT+TGG | 0.133192 | 1.3:+61743198 | None:intergenic |
| GATTTCCTGGTCTTGATAAT+TGG | 0.143495 | 1.3:-61745441 | MS.gene20843:CDS |
| CTTTGCAGCTGTGGTCTTCT+TGG | 0.147073 | 1.3:+61744847 | None:intergenic |
| ACTTGTGGACCAGTAGAATT+TGG | 0.162831 | 1.3:+61746495 | None:intergenic |
| TCCATCTATATCAGAATTTA+AGG | 0.164801 | 1.3:-61744537 | MS.gene20843:CDS |
| AATTTCTCTGTCCTCCTTAT+AGG | 0.170617 | 1.3:+61744362 | None:intergenic |
| AAAATAAAACATGTGGTTTC+AGG | 0.179171 | 1.3:+61744503 | None:intergenic |
| AAATCGGAAAAGGCAGTATT+TGG | 0.201132 | 1.3:-61744815 | MS.gene20843:CDS |
| TATACTCGCTTTCTTGATAC+TGG | 0.214753 | 1.3:-61743633 | MS.gene20843:CDS |
| ATTTGTTAACATCAAGGATT+TGG | 0.217175 | 1.3:+61745197 | None:intergenic |
| AAAAGTCAATAAAAGTAAAA+AGG | 0.225243 | 1.3:-61742690 | MS.gene20843:CDS |
| ACAGGTCATGGTGCCTTCTA+TGG | 0.228805 | 1.3:-61744056 | MS.gene20843:CDS |
| AAAACCCAATAAAAGGAAAA+AGG | 0.231177 | 1.3:-61743160 | MS.gene20843:CDS |
| TCTTGTGTAACTTAACTTCT+TGG | 0.243171 | 1.3:+61746185 | None:intergenic |
| GCCTCATCTCTTGTCTCATT+TGG | 0.250185 | 1.3:+61744782 | None:intergenic |
| TCATTCTTTGAATTCTTTCC+TGG | 0.251009 | 1.3:+61745466 | None:intergenic |
| TTCAACAGCCGCCACTTTCT+TGG | 0.251038 | 1.3:+61744086 | None:intergenic |
| GGTGTTCATTTCGCTCTCTT+TGG | 0.264409 | 1.3:-61750880 | MS.gene20843:CDS |
| AGTCCCCTAGGTTCAAAATT+TGG | 0.268181 | 1.3:-61746576 | MS.gene20843:CDS |
| TAAAGATTTGGATGGAATTC+CGG | 0.270747 | 1.3:-61748682 | MS.gene20843:CDS |
| TCCAAAGGCACCTGGCTTCC+AGG | 0.273647 | 1.3:-61746277 | MS.gene20843:CDS |
| CAGACAGTGACATTTCTTTC+AGG | 0.274545 | 1.3:+61744747 | None:intergenic |
| TCCTTAGACTTGATATTTGC+TGG | 0.278398 | 1.3:+61744572 | None:intergenic |
| ATTCGATTCAAGCTTGTTAA+TGG | 0.292549 | 1.3:-61750734 | MS.gene20843:CDS |
| TTCTGCCTTACTTTGATGTT+TGG | 0.298597 | 1.3:+61742943 | None:intergenic |
| TGCTATTTCTTTGCTTCTGC+TGG | 0.302908 | 1.3:+61745252 | None:intergenic |
| GTACAGACCGCTTAAAGATT+TGG | 0.314245 | 1.3:-61748694 | MS.gene20843:CDS |
| CCTTGATGTTAACAAATTGA+TGG | 0.316106 | 1.3:-61745191 | MS.gene20843:CDS |
| TATTCTAGGAAGAACCAAAA+AGG | 0.316958 | 1.3:-61746102 | MS.gene20843:CDS |
| TTTGTTAACATCAAGGATTT+GGG | 0.318611 | 1.3:+61745198 | None:intergenic |
| GATTCCAAGCTGGGGCAATC+AGG | 0.318812 | 1.3:-61746618 | MS.gene20843:CDS |
| CCAGGATCGGGATGACATTA+TGG | 0.318910 | 1.3:-61748619 | MS.gene20843:intron |
| AAAGATTTGGATGGAATTCC+GGG | 0.320376 | 1.3:-61748681 | MS.gene20843:CDS |
| TTCCAGGATATTGACATTAC+TGG | 0.328872 | 1.3:-61746261 | MS.gene20843:CDS |
| AGCATGACATCTCCTCTTTC+CGG | 0.334297 | 1.3:+61743324 | None:intergenic |
| TCTGTCCTCCTTATAGGATC+TGG | 0.341349 | 1.3:+61744368 | None:intergenic |
| TAATCTGCGTGATGACAATT+TGG | 0.341472 | 1.3:-61746211 | MS.gene20843:CDS |
| GTATCAAGAAAGCGAGTATA+AGG | 0.343349 | 1.3:+61743636 | None:intergenic |
| AAACCATGCTCTTCATCATT+TGG | 0.346087 | 1.3:+61744644 | None:intergenic |
| TCTTTACCCTTATTGGCATT+TGG | 0.346613 | 1.3:+61746468 | None:intergenic |
| GAGGATTGCAGCAATCGATA+TGG | 0.347128 | 1.3:+61742780 | None:intergenic |
| GCCAGCAAATATCAAGTCTA+AGG | 0.349651 | 1.3:-61744573 | MS.gene20843:CDS |
| TCCTGGAAGCCAGGTGCCTT+TGG | 0.349876 | 1.3:+61746276 | None:intergenic |
| GCCTTAAATTCTGATATAGA+TGG | 0.350253 | 1.3:+61744536 | None:intergenic |
| TCATAGCTCCAGATCCTATA+AGG | 0.358776 | 1.3:-61744376 | MS.gene20843:CDS |
| TCTGCATGTGTTGAAGGTTC+TGG | 0.362025 | 1.3:-61745979 | MS.gene20843:CDS |
| GATTCTGCATTTCCTGAGAT+AGG | 0.362624 | 1.3:+61745652 | None:intergenic |
| CAGCTGTTCCTGAGGAGGAT+TGG | 0.366522 | 1.3:-61743227 | MS.gene20843:CDS |
| ATTTCCTGGTCTTGATAATT+GGG | 0.369870 | 1.3:-61745440 | MS.gene20843:CDS |
| CGAGGACGGTGCCATCAATA+TGG | 0.373926 | 1.3:-61744114 | MS.gene20843:CDS |
| TCAAAGAATGAAGGATTTCC+TGG | 0.374952 | 1.3:-61745454 | MS.gene20843:CDS |
| TCTTGGAGCCTCCATATTGA+TGG | 0.375100 | 1.3:+61744103 | None:intergenic |
| TGCAAAGAAGTTAGCGAAAT+CGG | 0.379072 | 1.3:-61744831 | MS.gene20843:CDS |
| TTGCGCGGTGACTTTCTAAT+CGG | 0.381507 | 1.3:+61745391 | None:intergenic |
| GTTGAGTACGTCTGCAAGCC+GGG | 0.382287 | 1.3:-61743510 | MS.gene20843:CDS |
| GATTTGGTTGTCTGCTTGAC+TGG | 0.387720 | 1.3:-61748651 | MS.gene20843:CDS |
| GCATGACATCTCCTCTTTCC+GGG | 0.388741 | 1.3:+61743325 | None:intergenic |
| CTAATATGCTACAAATTTGA+AGG | 0.393357 | 1.3:-61748436 | MS.gene20843:intron |
| TGTTAATTTCTTCAGCTTGA+AGG | 0.393387 | 1.3:-61747390 | MS.gene20843:intron |
| TCAGCTGCCAAGAGAACTTT+GGG | 0.395676 | 1.3:-61745364 | MS.gene20843:CDS |
| AATTCCGGGTGCAAAAGATT+TGG | 0.397200 | 1.3:-61748667 | MS.gene20843:CDS |
| AAATCGACACGTGGCATGCC+AGG | 0.401546 | 1.3:+61743588 | None:intergenic |
| CTGATTTGTGGTGATGAAAC+TGG | 0.403537 | 1.3:-61742827 | MS.gene20843:CDS |
| AATCGGAAAAGGCAGTATTT+GGG | 0.404273 | 1.3:-61744814 | MS.gene20843:CDS |
| ATCACCGTTGGCTGGAAGAT+TGG | 0.404581 | 1.3:-61747535 | MS.gene20843:intron |
| TTCTCATCAGTGGTCATATC+AGG | 0.407810 | 1.3:-61744408 | MS.gene20843:CDS |
| ATTTCTTCAGCTTGAAGGAT+TGG | 0.411153 | 1.3:-61747385 | MS.gene20843:intron |
| ATTTGCAAAACTTCAAAGTA+AGG | 0.412007 | 1.3:-61743433 | MS.gene20843:CDS |
| CTTAAGCGTGCGGTCAAAGC+TGG | 0.412816 | 1.3:-61743687 | MS.gene20843:CDS |
| TTTCTTCAGCTTGAAGGATT+GGG | 0.414914 | 1.3:-61747384 | MS.gene20843:intron |
| GAGATTTACCATTTGTTAGT+GGG | 0.417900 | 1.3:+61745821 | None:intergenic |
| CTTGTGGACCAGTAGAATTT+GGG | 0.418686 | 1.3:+61746496 | None:intergenic |
| GGGATGCGCATTGTTGTATA+TGG | 0.419008 | 1.3:-61744035 | MS.gene20843:CDS |
| TGAGATTTACCATTTGTTAG+TGG | 0.420188 | 1.3:+61745820 | None:intergenic |
| CTTTATTGTGGCCAATCTCT+TGG | 0.421271 | 1.3:+61747565 | None:intergenic |
| AGCAAAGAAATAGCAACTTC+TGG | 0.422190 | 1.3:-61745244 | MS.gene20843:CDS |
| TCTACTTCACATTTGTCATC+TGG | 0.424117 | 1.3:+61745094 | None:intergenic |
| CACTCTTCGCGAGTCTTTCG+CGG | 0.424802 | 1.3:-61750901 | MS.gene20843:CDS |
| AACAATGCGCATCCCATAGA+AGG | 0.432187 | 1.3:+61744043 | None:intergenic |
| TGGCATGCCAGGGCTAACTA+TGG | 0.435261 | 1.3:+61743599 | None:intergenic |
| AATGGCTCCGGATGAAGAAT+TGG | 0.436222 | 1.3:-61745065 | MS.gene20843:CDS |
| ACTGGAAATACAAATTCATC+TGG | 0.437293 | 1.3:-61746243 | MS.gene20843:CDS |
| TTCAAGCTTGTTAATGGCGG+TGG | 0.438677 | 1.3:-61750728 | MS.gene20843:CDS |
| GTCAGCTGCCAAGAGAACTT+TGG | 0.438819 | 1.3:-61745365 | MS.gene20843:CDS |
| TAGAAAACTGTGCACCCATC+AGG | 0.438898 | 1.3:+61748488 | None:intergenic |
| TTTCTTTCTGTTGACAAAGA+TGG | 0.441291 | 1.3:-61745748 | MS.gene20843:CDS |
| TTTGAGGAGAGAAGAAATGT+TGG | 0.441816 | 1.3:-61744623 | MS.gene20843:CDS |
| TCAGACAATGGTTGGCCTGA+TGG | 0.442786 | 1.3:-61748503 | MS.gene20843:intron |
| CCCTTCCACCAAGGTAGAAA+AGG | 0.443209 | 1.3:-61746019 | MS.gene20843:CDS |
| CCATCAATTTGTTAACATCA+AGG | 0.444383 | 1.3:+61745191 | None:intergenic |
| TGCCACTCATAAGGCTCCTC+TGG | 0.446343 | 1.3:+61744152 | None:intergenic |
| CAGCTATTCCCGAGGAGGAT+TGG | 0.447918 | 1.3:-61742751 | MS.gene20843:CDS |
| TTCCCTCTTCAGACAATGGT+TGG | 0.449094 | 1.3:-61748511 | MS.gene20843:intron |
| ATCAGCATTCTTAGACTCAA+TGG | 0.450480 | 1.3:+61746302 | None:intergenic |
| ACTGTACGGCACTCATGCTT+TGG | 0.452603 | 1.3:-61743466 | MS.gene20843:CDS |
| ATACTCGCTTTCTTGATACT+GGG | 0.453049 | 1.3:-61743632 | MS.gene20843:CDS |
| GACAAATGTGAAGTAGAGTT+GGG | 0.453783 | 1.3:-61745088 | MS.gene20843:CDS |
| TTGAGGAGAGAAGAAATGTT+GGG | 0.457765 | 1.3:-61744622 | MS.gene20843:CDS |
| GCATGCCACGTGTCGATTTG+TGG | 0.463323 | 1.3:-61743584 | MS.gene20843:CDS |
| TCTTCTGCATACTCACTAAC+CGG | 0.463631 | 1.3:+61745160 | None:intergenic |
| CGCTAACTTCTTTGCAGCTG+TGG | 0.465086 | 1.3:+61744838 | None:intergenic |
| TCGGTGCTACGAGTTATTCT+AGG | 0.468156 | 1.3:-61746116 | MS.gene20843:CDS |
| GCATTTGATAAGCCTATCTC+AGG | 0.468199 | 1.3:-61745664 | MS.gene20843:CDS |
| CAGACAATGGTTGGCCTGAT+GGG | 0.468396 | 1.3:-61748502 | MS.gene20843:CDS |
| ATCAAATCTGCATGTGTTGA+AGG | 0.468581 | 1.3:-61745985 | MS.gene20843:CDS |
| ATTCCAAGCTGGGGCAATCA+GGG | 0.469861 | 1.3:-61746617 | MS.gene20843:CDS |
| TTGTGTTGTAGCGGACTACT+TGG | 0.476668 | 1.3:-61743532 | MS.gene20843:CDS |
| CGATCATCTCACAGAAAACA+AGG | 0.477136 | 1.3:-61750854 | MS.gene20843:intron |
| CCATAATGTCATCCCGATCC+TGG | 0.479361 | 1.3:+61748619 | None:intergenic |
| TTTCCGGGGATCCACATACT+TGG | 0.479829 | 1.3:+61743340 | None:intergenic |
| CATGCCACGTGTCGATTTGT+GGG | 0.481317 | 1.3:-61743583 | MS.gene20843:CDS |
| AGCTACATGAATCATATGTT+AGG | 0.482525 | 1.3:-61746326 | MS.gene20843:CDS |
| CTGCATGTGTTGAAGGTTCT+GGG | 0.482604 | 1.3:-61745978 | MS.gene20843:CDS |
| TGACAAATGTGAAGTAGAGT+TGG | 0.483171 | 1.3:-61745089 | MS.gene20843:CDS |
| GGGCAAAACCAATCCTCCTC+GGG | 0.485220 | 1.3:+61742743 | None:intergenic |
| TTGATCTACTACCCTGGAAA+AGG | 0.486609 | 1.3:+61746074 | None:intergenic |
| GATGTTGGTGACTGCATTGT+GGG | 0.486729 | 1.3:-61750520 | MS.gene20843:CDS |
| TTCCAGTAATGTCAATATCC+TGG | 0.487192 | 1.3:+61746259 | None:intergenic |
| TGGCTATCTACGCCAGGATC+GGG | 0.488311 | 1.3:-61748631 | MS.gene20843:CDS |
| GAACCTGACAGCTTACCTTC+AGG | 0.489934 | 1.3:+61746379 | None:intergenic |
| ACTAGAGATGATGGCGGAAG+AGG | 0.490099 | 1.3:-61746667 | MS.gene20843:CDS |
| GGGACAGACTCACTTTGCCT+TGG | 0.490392 | 1.3:+61743122 | None:intergenic |
| GCTAGTTAATCACCGTTGGC+TGG | 0.491106 | 1.3:-61747543 | MS.gene20843:CDS |
| AGATGAACCAATTCTTCATC+CGG | 0.491955 | 1.3:+61745058 | None:intergenic |
| TTTCCCGCGATCCACATACT+TGG | 0.492525 | 1.3:+61742864 | None:intergenic |
| GTACGAGCTTGCCAAGAGAT+TGG | 0.493559 | 1.3:-61747576 | MS.gene20843:CDS |
| TCTAGAACCCAAAGTTCTCT+TGG | 0.493789 | 1.3:+61745357 | None:intergenic |
| AAATAACTTAAATACCTGCT+TGG | 0.501492 | 1.3:-61745722 | MS.gene20843:CDS |
| GGTTGAGTACGTCTGCAAGC+CGG | 0.501698 | 1.3:-61743511 | MS.gene20843:CDS |
| CAACCTGAAGGTAAGCTGTC+AGG | 0.502452 | 1.3:-61746382 | MS.gene20843:CDS |
| TTTCTTAAGTGCCAGTAGCC+AGG | 0.503878 | 1.3:-61744189 | MS.gene20843:CDS |
| AATGGCGGTGGAGTTGATGC+GGG | 0.504030 | 1.3:-61750716 | MS.gene20843:CDS |
| GAAGGTTCTGGGAAAGAAAC+TGG | 0.504396 | 1.3:-61745967 | MS.gene20843:CDS |
| CAAACCGAGGTAGCATCAAC+AGG | 0.505536 | 1.3:+61750471 | None:intergenic |
| TGGCCATCGCCTACAGAGAA+AGG | 0.506713 | 1.3:-61744477 | MS.gene20843:CDS |
| GCACTCATGCTTTGGCAGAT+AGG | 0.508633 | 1.3:-61743458 | MS.gene20843:CDS |
| GAGGCGGAAGATTCCAAGCT+GGG | 0.509729 | 1.3:-61746627 | MS.gene20843:CDS |
| ATTTACCAAACATCAAAGTA+AGG | 0.510575 | 1.3:-61742948 | MS.gene20843:CDS |
| GGGCAAAACCAATCCTCCTC+AGG | 0.510620 | 1.3:+61743219 | None:intergenic |
| AAAACTACTCAGCGAGATGA+AGG | 0.510675 | 1.3:-61745286 | MS.gene20843:CDS |
| GATGAGCCACCTGTGTCTGA+TGG | 0.510751 | 1.3:-61745772 | MS.gene20843:CDS |
| CAGGTCATGGTGCCTTCTAT+GGG | 0.513908 | 1.3:-61744055 | MS.gene20843:CDS |
| TGATCAAGCGTTTGAAAGGA+AGG | 0.513959 | 1.3:-61744442 | MS.gene20843:CDS |
| GTTCTTATCACAGGACGATC+CGG | 0.515315 | 1.3:-61750571 | MS.gene20843:intron |
| ATAATTCATTGCCTCAAAAG+AGG | 0.515513 | 1.3:-61745921 | MS.gene20843:CDS |
| GGAGATTTGATGCTGATTTG+TGG | 0.515683 | 1.3:-61742839 | MS.gene20843:CDS |
| GAAGTTAGCGAAATCGGAAA+AGG | 0.517733 | 1.3:-61744825 | MS.gene20843:CDS |
| GTTGATGCGGGGAAGAACAC+TGG | 0.518035 | 1.3:-61750704 | MS.gene20843:CDS |
| TTAATCAAGTCTAAAGATAG+TGG | 0.518083 | 1.3:-61745577 | MS.gene20843:CDS |
| GGCAGAAGAGATTATTGAGG+AGG | 0.521403 | 1.3:-61743412 | MS.gene20843:CDS |
| AGGATTGCAGCAATCGATAT+GGG | 0.522430 | 1.3:+61742781 | None:intergenic |
| GGAAAGAATTCAAAGAATGA+AGG | 0.523294 | 1.3:-61745463 | MS.gene20843:CDS |
| TCAACTTCTACAAGTGCTGA+TGG | 0.523391 | 1.3:-61746162 | MS.gene20843:CDS |
| GATGATGGCGGAAGAGGCTA+AGG | 0.523468 | 1.3:-61746661 | MS.gene20843:CDS |
| CTGGCTATCTACGCCAGGAT+CGG | 0.524351 | 1.3:-61748632 | MS.gene20843:CDS |
| TTTGGCACAGCTGTGACTCA+TGG | 0.524555 | 1.3:-61746558 | MS.gene20843:CDS |
| CGTGCGGTCAAAGCTGGAGA+TGG | 0.526398 | 1.3:-61743681 | MS.gene20843:CDS |
| ATCAAATGCCAATGTGTTGG+AGG | 0.526782 | 1.3:+61745678 | None:intergenic |
| GTGATTAACTAGCTTTATTG+TGG | 0.528417 | 1.3:+61747553 | None:intergenic |
| TTAAGTGCCAGTAGCCAGGC+AGG | 0.529869 | 1.3:-61744185 | MS.gene20843:CDS |
| GGCTAAGGATTCTGAGGATG+AGG | 0.530245 | 1.3:-61746646 | MS.gene20843:CDS |
| AATGAGACAAGAGATGAGGC+AGG | 0.530559 | 1.3:-61744779 | MS.gene20843:CDS |
| AAAGCCATCCCAAATTCTAC+TGG | 0.533698 | 1.3:-61746504 | MS.gene20843:CDS |
| AGATTTACCATTTGTTAGTG+GGG | 0.534103 | 1.3:+61745822 | None:intergenic |
| CGTACAGTACGTGTCTCTCA+AGG | 0.534451 | 1.3:+61743481 | None:intergenic |
| GTATGTGGATCGCGGGAAAG+AGG | 0.535687 | 1.3:-61742860 | MS.gene20843:CDS |
| AAAGACTCTTCGATTACTAC+AGG | 0.536651 | 1.3:-61746450 | MS.gene20843:CDS |
| GTAGAATGCAAAGAAACGTC+AGG | 0.538051 | 1.3:+61746357 | None:intergenic |
| CTTGACTGGCTATCTACGCC+AGG | 0.538587 | 1.3:-61748637 | MS.gene20843:CDS |
| GGTTCCATTGGCTGTGGAGT+GGG | 0.539135 | 1.3:-61742806 | MS.gene20843:CDS |
| TCCGCTGGCAGCTGTTCCTG+AGG | 0.539542 | 1.3:-61743235 | MS.gene20843:CDS |
| GGTGATGAAACTGGTTCCAT+TGG | 0.539624 | 1.3:-61742818 | MS.gene20843:CDS |
| TGGGCAAAACCAATCCTCCT+CGG | 0.539703 | 1.3:+61742742 | None:intergenic |
| GAAGTTAGAAGCAGTTGACC+AGG | 0.539770 | 1.3:-61745005 | MS.gene20843:CDS |
| CAGGTGATCAAGCGTTTGAA+AGG | 0.545429 | 1.3:-61744446 | MS.gene20843:CDS |
| AGTAGAGTTGGGAATGGCTC+CGG | 0.546272 | 1.3:-61745077 | MS.gene20843:CDS |
| TTCACATTGATCTACTACCC+TGG | 0.547336 | 1.3:+61746068 | None:intergenic |
| GAAAGTGGTTCCGTTGGCTG+TGG | 0.549655 | 1.3:-61743288 | MS.gene20843:CDS |
| TTCTAACTTCTCTTCTGCTG+AGG | 0.549668 | 1.3:+61745018 | None:intergenic |
| TAAGGCAGAAGAGATTATCA+AGG | 0.551599 | 1.3:-61742930 | MS.gene20843:CDS |
| TGTGTTGCTGCGAGAGAGGA+TGG | 0.552898 | 1.3:-61750546 | MS.gene20843:CDS |
| TAAGGCAGAAGAGATTATTG+AGG | 0.553441 | 1.3:-61743415 | MS.gene20843:CDS |
| ACAGAGAAAGGAGTTTCAGC+AGG | 0.553933 | 1.3:-61744465 | MS.gene20843:CDS |
| CTTATCAAATGCCAATGTGT+TGG | 0.554180 | 1.3:+61745675 | None:intergenic |
| TTGGGTTCTAGACCCAGAAA+AGG | 0.554581 | 1.3:-61745346 | MS.gene20843:CDS |
| GGAGATGTCATGCTGATTTG+TGG | 0.554732 | 1.3:-61743315 | MS.gene20843:CDS |
| CGACTGCTGCGATCCTCCGC+TGG | 0.556838 | 1.3:-61743250 | MS.gene20843:CDS |
| ATGTCAATATCCTGGAAGCC+AGG | 0.557352 | 1.3:+61746267 | None:intergenic |
| TAAGCCGTTGGTCGCAAACA+AGG | 0.557591 | 1.3:-61748467 | MS.gene20843:CDS |
| GTATGTGGATCCCCGGAAAG+AGG | 0.557935 | 1.3:-61743336 | MS.gene20843:CDS |
| GACTATGCCATAGTTAGCCC+TGG | 0.558059 | 1.3:-61743606 | MS.gene20843:CDS |
| AAATTGTCATCACGCAGATT+AGG | 0.560313 | 1.3:+61746213 | None:intergenic |
| GGTACCCACTCCACAGCCAA+TGG | 0.560665 | 1.3:+61742802 | None:intergenic |
| GGGTGCATTGTCTTCATCAA+AGG | 0.560961 | 1.3:-61742669 | MS.gene20843:CDS |
| TTGCCAAGTATGTGGATCGC+GGG | 0.563072 | 1.3:-61742867 | MS.gene20843:CDS |
| TCCTCAGGAACAGCTGCCAG+CGG | 0.564075 | 1.3:+61743234 | None:intergenic |
| GCTGAAACTCCTTTCTCTGT+AGG | 0.564808 | 1.3:+61744468 | None:intergenic |
| TAATGGCGGTGGAGTTGATG+CGG | 0.564836 | 1.3:-61750717 | MS.gene20843:CDS |
| AGAAACTGGTGTTATTCAAG+AGG | 0.565350 | 1.3:-61745953 | MS.gene20843:CDS |
| AGACCGCTTAAAGATTTGGA+TGG | 0.566779 | 1.3:-61748690 | MS.gene20843:CDS |
| GGTTCCGTTGGCTGTGGAGT+GGG | 0.567218 | 1.3:-61743282 | MS.gene20843:CDS |
| TTGCCAAGTATGTGGATCCC+CGG | 0.569403 | 1.3:-61743343 | MS.gene20843:CDS |
| GTAACCTTGTTTGCGACCAA+CGG | 0.570120 | 1.3:+61748463 | None:intergenic |
| CAAGGAGGTCATTCCTCATG+AGG | 0.570635 | 1.3:-61742912 | MS.gene20843:CDS |
| TCAGGAACAGCTGCCAGCGG+AGG | 0.571501 | 1.3:+61743237 | None:intergenic |
| TGAGGCGGAAGATTCCAAGC+TGG | 0.572135 | 1.3:-61746628 | MS.gene20843:CDS |
| GGGTGCATTGTCTTCATCCA+AGG | 0.576286 | 1.3:-61743139 | MS.gene20843:CDS |
| ACTATAAGCAAAAGTCCCCT+AGG | 0.576594 | 1.3:-61746588 | MS.gene20843:CDS |
| AATAGCAACTTCTGGTGTGA+AGG | 0.576721 | 1.3:-61745236 | MS.gene20843:CDS |
| CATCTTGAGTGTTCATCACC+AGG | 0.578167 | 1.3:-61745484 | MS.gene20843:CDS |
| GCCACTTAAAATAAAACATG+TGG | 0.579555 | 1.3:+61744496 | None:intergenic |
| CTGAAAACAAATATAACAAG+AGG | 0.579867 | 1.3:-61747352 | MS.gene20843:intron |
| CTGATTTGTGGTGATGAAAG+TGG | 0.580324 | 1.3:-61743303 | MS.gene20843:CDS |
| TAAAGCTAGTTAATCACCGT+TGG | 0.584487 | 1.3:-61747547 | MS.gene20843:CDS |
| GAAACTGGTTCCATTGGCTG+TGG | 0.584504 | 1.3:-61742812 | MS.gene20843:CDS |
| CTTGAGAGACACGTACTGTA+CGG | 0.584559 | 1.3:-61743480 | MS.gene20843:CDS |
| CGGCTGTTGAAAGAAAGAAC+AGG | 0.584901 | 1.3:-61744074 | MS.gene20843:CDS |
| AGTGAGTATGCAGAAGATGC+TGG | 0.586456 | 1.3:-61745154 | MS.gene20843:CDS |
| AATGCCTGTTGATGCTACCT+CGG | 0.587295 | 1.3:-61750475 | MS.gene20843:intron |
| TTACCTTCCTGATGCAGTAG+CGG | 0.587895 | 1.3:+61744334 | None:intergenic |
| CTAACAAATGGTAAATCTCA+AGG | 0.589314 | 1.3:-61745817 | MS.gene20843:CDS |
| GATATAGCTTGCCAAGTATG+TGG | 0.590227 | 1.3:-61743351 | MS.gene20843:CDS |
| TCCAAGCTGGGGCAATCAGG+GGG | 0.590436 | 1.3:-61746615 | MS.gene20843:CDS |
| GAGTTCTCACTTATATCAGA+AGG | 0.591107 | 1.3:+61744722 | None:intergenic |
| CGATTCAAGCTTGTTAATGG+CGG | 0.592256 | 1.3:-61750731 | MS.gene20843:CDS |
| ACTCCTTTCTCTGTAGGCGA+TGG | 0.592552 | 1.3:+61744474 | None:intergenic |
| GCTCAAGGGACAGACTCACT+TGG | 0.593309 | 1.3:+61742646 | None:intergenic |
| TTGAAAGAAAGAACAGGTCA+TGG | 0.594190 | 1.3:-61744068 | MS.gene20843:CDS |
| TACTCGCTTTCTTGATACTG+GGG | 0.595273 | 1.3:-61743631 | MS.gene20843:CDS |
| ATATGGAGGCTCCAAGAAAG+TGG | 0.595831 | 1.3:-61744097 | MS.gene20843:CDS |
| AGCTTCTGCCTCCAACACAT+TGG | 0.597432 | 1.3:-61745686 | MS.gene20843:CDS |
| GATGTAGCTTGCCAAGTATG+TGG | 0.597538 | 1.3:-61742875 | MS.gene20843:CDS |
| CATGACATCTCCTCTTTCCG+GGG | 0.598439 | 1.3:+61743326 | None:intergenic |
| GAGGTTGAGTCTAACTCTGA+AGG | 0.599018 | 1.3:+61744917 | None:intergenic |
| TTCCAAGCTGGGGCAATCAG+GGG | 0.599814 | 1.3:-61746616 | MS.gene20843:CDS |
| AGATGTTGGTGACTGCATTG+TGG | 0.600644 | 1.3:-61750521 | MS.gene20843:CDS |
| GCTGGCAGCTGTTCCTGAGG+AGG | 0.600700 | 1.3:-61743232 | MS.gene20843:CDS |
| GTCAAAATCTCTAAGAGAGG+AGG | 0.602945 | 1.3:-61746532 | MS.gene20843:CDS |
| TGGACCAGTAGAATTTGGGA+TGG | 0.603738 | 1.3:+61746500 | None:intergenic |
| TAGTGGTGAGCCTGATGCAA+CGG | 0.604279 | 1.3:-61745560 | MS.gene20843:CDS |
| TGGTTCCGTTGGCTGTGGAG+TGG | 0.604568 | 1.3:-61743283 | MS.gene20843:CDS |
| CAAGGTAGAAAAGGCAAGTG+AGG | 0.606134 | 1.3:-61746010 | MS.gene20843:CDS |
| GATCAAGCGTTTGAAAGGAA+GGG | 0.612539 | 1.3:-61744441 | MS.gene20843:CDS |
| TGCGGATTTAGAAACCAAGC+AGG | 0.612594 | 1.3:+61745708 | None:intergenic |
| GTTGAACATAGTGCTGATGT+TGG | 0.612914 | 1.3:-61750498 | MS.gene20843:CDS |
| AAATCCCAATTATCAAGACC+AGG | 0.613763 | 1.3:+61745436 | None:intergenic |
| TTGGCAGCTGACTTCTTGCG+CGG | 0.614710 | 1.3:+61745376 | None:intergenic |
| AGTACCCACTCCACAGCCAA+CGG | 0.616922 | 1.3:+61743278 | None:intergenic |
| TCATCGTCGCGATCCTCATG+AGG | 0.617058 | 1.3:+61743381 | None:intergenic |
| ATGTGAAGTAGAGTTGGGAA+TGG | 0.617643 | 1.3:-61745083 | MS.gene20843:CDS |
| AATCGACACGTGGCATGCCA+GGG | 0.619056 | 1.3:+61743589 | None:intergenic |
| TGTGTTGGAGGCAGAAGCTG+CGG | 0.620092 | 1.3:+61745690 | None:intergenic |
| TTGAGTACGTCTGCAAGCCG+GGG | 0.621599 | 1.3:-61743509 | MS.gene20843:CDS |
| GTACAGTACGTGTCTCTCAA+GGG | 0.622673 | 1.3:+61743482 | None:intergenic |
| GGTGGCTCATCAACCACAGA+TGG | 0.622968 | 1.3:+61745784 | None:intergenic |
| GGTGATGAAAGTGGTTCCGT+TGG | 0.623291 | 1.3:-61743294 | MS.gene20843:CDS |
| GGTGTGTGTTGCTGCGAGAG+AGG | 0.626024 | 1.3:-61750550 | MS.gene20843:CDS |
| TCATCATTGCAACCCTCATG+AGG | 0.626300 | 1.3:+61742899 | None:intergenic |
| AAGGAGGTCATTCCTCATGA+GGG | 0.627795 | 1.3:-61742911 | MS.gene20843:CDS |
| AGACCAAATGATGAAGAGCA+TGG | 0.627980 | 1.3:-61744647 | MS.gene20843:CDS |
| TGGTTCCATTGGCTGTGGAG+TGG | 0.628638 | 1.3:-61742807 | MS.gene20843:CDS |
| GCATAATATTAGCAACCTGA+AGG | 0.628689 | 1.3:-61746394 | MS.gene20843:CDS |
| AAGTAGTCCGCTACAACACA+AGG | 0.628899 | 1.3:+61743534 | None:intergenic |
| TCAAGAAAGCGAGTATAAGG+AGG | 0.629991 | 1.3:+61743639 | None:intergenic |
| TCCAAATGAGACAAGAGATG+AGG | 0.630653 | 1.3:-61744783 | MS.gene20843:CDS |
| TTGCCGCTACTGCATCAGGA+AGG | 0.631958 | 1.3:-61744337 | MS.gene20843:intron |
| ATACAAATTCATCTGGTCTG+TGG | 0.632592 | 1.3:-61746236 | MS.gene20843:CDS |
| ATCGGAAAAGGCAGTATTTG+GGG | 0.632673 | 1.3:-61744813 | MS.gene20843:CDS |
| TTGTTAACATCAAGGATTTG+GGG | 0.635516 | 1.3:+61745199 | None:intergenic |
| GCACATTCAGATGAAAAGCT+CGG | 0.636983 | 1.3:-61746135 | MS.gene20843:CDS |
| ATCGTCAAAATCTCTAAGAG+AGG | 0.640134 | 1.3:-61746535 | MS.gene20843:CDS |
| GGAAGAGGCTAAGGATTCTG+AGG | 0.640663 | 1.3:-61746652 | MS.gene20843:CDS |
| TCCTCGGGAATAGCTGTCAG+CGG | 0.641403 | 1.3:+61742758 | None:intergenic |
| TTTGCCGTGATTCTCATCAG+TGG | 0.642588 | 1.3:-61744418 | MS.gene20843:CDS |
| CTTGCCAAGTATGTGGATCG+CGG | 0.642622 | 1.3:-61742868 | MS.gene20843:CDS |
| GGCAGGAAAATTATTGCCAG+AGG | 0.644253 | 1.3:-61744168 | MS.gene20843:CDS |
| ATGAGACAAGAGATGAGGCA+GGG | 0.645233 | 1.3:-61744778 | MS.gene20843:CDS |
| TCGTCGCGATCCTCATGAGG+AGG | 0.645323 | 1.3:+61743384 | None:intergenic |
| GAAAGAAAGCCATCAGACAC+AGG | 0.645551 | 1.3:+61745763 | None:intergenic |
| ACAGGATACTCTTAAGCGTG+CGG | 0.647401 | 1.3:-61743697 | MS.gene20843:intron |
| ATTCCATCCAAATCTTTAAG+CGG | 0.647811 | 1.3:+61748687 | None:intergenic |
| GAGAGAGGATGGAAAGATGT+TGG | 0.648494 | 1.3:-61750535 | MS.gene20843:CDS |
| GGAGGTTATTCCTCCTCATG+AGG | 0.650168 | 1.3:-61743394 | MS.gene20843:CDS |
| TGAGATACCTTGTGTTGTAG+CGG | 0.650742 | 1.3:-61743541 | MS.gene20843:CDS |
| TAAGGATTCTGAGGATGAGG+CGG | 0.653839 | 1.3:-61746643 | MS.gene20843:CDS |
| TCTCTCGCAGCAACACACAC+CGG | 0.655994 | 1.3:+61750552 | None:intergenic |
| TCCGCTGACAGCTATTCCCG+AGG | 0.660558 | 1.3:-61742759 | MS.gene20843:CDS |
| GATCAATGTGAAGACAGAGA+AGG | 0.661317 | 1.3:-61746057 | MS.gene20843:CDS |
| GGCAGAAGAGATTATCAAGG+AGG | 0.663325 | 1.3:-61742927 | MS.gene20843:CDS |
| TCGGGAATAGCTGTCAGCGG+AGG | 0.663496 | 1.3:+61742761 | None:intergenic |
| ATGACCACTGATGAGAATCA+CGG | 0.663566 | 1.3:+61744414 | None:intergenic |
| GGACGGTGCCATCAATATGG+AGG | 0.665513 | 1.3:-61744111 | MS.gene20843:CDS |
| AGGCGGAAGATTCCAAGCTG+GGG | 0.675147 | 1.3:-61746626 | MS.gene20843:CDS |
| AGGATCGAAAGTGCCATCTG+TGG | 0.676967 | 1.3:-61745797 | MS.gene20843:CDS |
| ATGGCGGTGGAGTTGATGCG+GGG | 0.679578 | 1.3:-61750715 | MS.gene20843:CDS |
| TGGAGGCTCCAAGAAAGTGG+CGG | 0.683408 | 1.3:-61744094 | MS.gene20843:CDS |
| TGCCAGAGGAGCCTTATGAG+TGG | 0.683644 | 1.3:-61744154 | MS.gene20843:CDS |
| TAGCTCCAGATCCTATAAGG+AGG | 0.687705 | 1.3:-61744373 | MS.gene20843:CDS |
| CATACCAATCTTCCAGCCAA+CGG | 0.689524 | 1.3:+61747531 | None:intergenic |
| TCTTGAAACCCCTTCCACCA+AGG | 0.691814 | 1.3:-61746028 | MS.gene20843:CDS |
| AGAAAGCCATCAGACACAGG+TGG | 0.698252 | 1.3:+61745766 | None:intergenic |
| GCTGACAGCTATTCCCGAGG+AGG | 0.706393 | 1.3:-61742756 | MS.gene20843:CDS |
| TGGACCCACAAATCGACACG+TGG | 0.713655 | 1.3:+61743579 | None:intergenic |
| TGATGAACACTCAAGATGTG+TGG | 0.746588 | 1.3:+61745489 | None:intergenic |
| TGTCTCTCAAGGGAGAACCC+CGG | 0.757252 | 1.3:+61743492 | None:intergenic |
| GAGTATGCAGAAGATGCTGG+TGG | 0.768912 | 1.3:-61745151 | MS.gene20843:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 61742661 | 61750938 | 61742661 | ID=MS.gene20843 |
| chr1.3 | mRNA | 61742661 | 61750938 | 61742661 | ID=MS.gene20843.t1;Parent=MS.gene20843 |
| chr1.3 | exon | 61750855 | 61750938 | 61750855 | ID=MS.gene20843.t1.exon1;Parent=MS.gene20843.t1 |
| chr1.3 | CDS | 61750855 | 61750938 | 61750855 | ID=cds.MS.gene20843.t1;Parent=MS.gene20843.t1 |
| chr1.3 | exon | 61750667 | 61750756 | 61750667 | ID=MS.gene20843.t1.exon2;Parent=MS.gene20843.t1 |
| chr1.3 | CDS | 61750667 | 61750756 | 61750667 | ID=cds.MS.gene20843.t1;Parent=MS.gene20843.t1 |
| chr1.3 | exon | 61750476 | 61750580 | 61750476 | ID=MS.gene20843.t1.exon3;Parent=MS.gene20843.t1 |
| chr1.3 | CDS | 61750476 | 61750580 | 61750476 | ID=cds.MS.gene20843.t1;Parent=MS.gene20843.t1 |
| chr1.3 | exon | 61748620 | 61748721 | 61748620 | ID=MS.gene20843.t1.exon4;Parent=MS.gene20843.t1 |
| chr1.3 | CDS | 61748620 | 61748721 | 61748620 | ID=cds.MS.gene20843.t1;Parent=MS.gene20843.t1 |
| chr1.3 | exon | 61748437 | 61748521 | 61748437 | ID=MS.gene20843.t1.exon5;Parent=MS.gene20843.t1 |
| chr1.3 | CDS | 61748437 | 61748521 | 61748437 | ID=cds.MS.gene20843.t1;Parent=MS.gene20843.t1 |
| chr1.3 | exon | 61747536 | 61747605 | 61747536 | ID=MS.gene20843.t1.exon6;Parent=MS.gene20843.t1 |
| chr1.3 | CDS | 61747536 | 61747605 | 61747536 | ID=cds.MS.gene20843.t1;Parent=MS.gene20843.t1 |
| chr1.3 | exon | 61747353 | 61747397 | 61747353 | ID=MS.gene20843.t1.exon7;Parent=MS.gene20843.t1 |
| chr1.3 | CDS | 61747353 | 61747397 | 61747353 | ID=cds.MS.gene20843.t1;Parent=MS.gene20843.t1 |
| chr1.3 | exon | 61744338 | 61746698 | 61744338 | ID=MS.gene20843.t1.exon8;Parent=MS.gene20843.t1 |
| chr1.3 | CDS | 61744338 | 61746698 | 61744338 | ID=cds.MS.gene20843.t1;Parent=MS.gene20843.t1 |
| chr1.3 | exon | 61744013 | 61744229 | 61744013 | ID=MS.gene20843.t1.exon9;Parent=MS.gene20843.t1 |
| chr1.3 | CDS | 61744013 | 61744229 | 61744013 | ID=cds.MS.gene20843.t1;Parent=MS.gene20843.t1 |
| chr1.3 | exon | 61743135 | 61743715 | 61743135 | ID=MS.gene20843.t1.exon10;Parent=MS.gene20843.t1 |
| chr1.3 | CDS | 61743135 | 61743715 | 61743135 | ID=cds.MS.gene20843.t1;Parent=MS.gene20843.t1 |
| chr1.3 | exon | 61742661 | 61742973 | 61742661 | ID=MS.gene20843.t1.exon11;Parent=MS.gene20843.t1 |
| chr1.3 | CDS | 61742661 | 61742973 | 61742661 | ID=cds.MS.gene20843.t1;Parent=MS.gene20843.t1 |
| Gene Sequence |
| Protein sequence |
