AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06057


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06057.t1 MTR_8g099305 97.059 476 11 2 1 474 1 475 0.0 904
MS.gene06057.t1 MTR_6g044445 89.474 38 4 0 329 366 65 102 7.88e-13 65.1
MS.gene06057.t1 MTR_8g073345 47.126 87 40 2 257 337 29 115 1.31e-12 65.5
MS.gene06057.t1 MTR_8g073345 47.126 87 40 2 257 337 29 115 1.32e-12 65.5
MS.gene06057.t1 MTR_3g115580 41.111 90 50 1 255 341 35 124 4.65e-12 64.3
MS.gene06057.t1 MTR_7g068280 45.205 73 37 1 261 330 47 119 8.05e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06057.t1 AT4G11080 57.609 460 162 7 10 464 11 442 2.72e-163 469
MS.gene06057.t1 AT4G23800 57.083 480 159 9 1 467 1 446 4.45e-161 463
MS.gene06057.t1 AT4G23800 56.875 480 166 8 1 467 1 452 6.40e-160 461
MS.gene06057.t1 AT3G51880 42.857 84 44 2 251 330 38 121 8.44e-12 63.9
MS.gene06057.t1 AT3G51880 42.857 84 44 2 251 330 38 121 1.12e-11 63.9
MS.gene06057.t1 AT3G51880 42.857 84 44 2 251 330 38 121 1.12e-11 63.9
MS.gene06057.t1 AT3G51880 42.857 84 44 2 251 330 38 121 1.12e-11 63.9
MS.gene06057.t1 AT3G51880 42.857 84 44 2 251 330 38 121 1.31e-11 63.9
MS.gene06057.t1 AT4G35570 38.824 85 49 2 251 332 20 104 4.61e-11 60.8
MS.gene06057.t1 AT4G35570 38.824 85 49 2 251 332 20 104 4.61e-11 60.8
MS.gene06057.t1 AT1G20696 35.294 119 72 2 260 375 30 146 9.11e-11 60.5

Find 102 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGACATTTCAAACATTT+TGG 0.072036 4.1:-4765089 MS.gene06057:CDS
CTTCATGTTTCTGAAGTTTC+AGG 0.139396 4.1:+4764087 None:intergenic
CAAAGTCAATTATTACTTAT+TGG 0.173280 4.1:+4763506 None:intergenic
TTGCTTCAAGATCTCATCTT+TGG 0.243800 4.1:+4765642 None:intergenic
AAATCCAGAGGCAGAATTTA+AGG 0.251785 4.1:-4765107 MS.gene06057:CDS
CTTGCAATTGCTCAAGAAAA+AGG 0.274473 4.1:-4764063 MS.gene06057:CDS
CTTCTTCGGCATACATGTTA+TGG 0.283880 4.1:-4765282 MS.gene06057:CDS
GTTTGTAAGCCTCCATTTCT+TGG 0.287307 4.1:+4764159 None:intergenic
CTTCCTCTTGATTTCTTTGT+CGG 0.303855 4.1:+4765898 None:intergenic
CCACTCTTCAGATGTGATCT+TGG 0.324738 4.1:+4764337 None:intergenic
TGCTCGAAAGATCGTTCCTT+TGG 0.352886 4.1:+4765739 None:intergenic
GCTTGGTATTTCTCCTCATA+AGG 0.353624 4.1:+4765028 None:intergenic
CATCCTCATATATTCTATTC+AGG 0.354033 4.1:-4763938 MS.gene06057:intron
AAAGCTGACATAGGATGCTT+TGG 0.369497 4.1:+4764824 None:intergenic
CAAATCTATTGTTGCAAAGC+TGG 0.374240 4.1:-4763538 MS.gene06057:CDS
GTTAGACAGATTCTCAGAAA+TGG 0.376205 4.1:+4765801 None:intergenic
TTTAGATGGCTAAGAAGAAC+AGG 0.380697 4.1:-4764193 MS.gene06057:intron
AGCTATGATGTTGGAATCAT+TGG 0.383362 4.1:+4765843 None:intergenic
TTTGTAAGCCTCCATTTCTT+GGG 0.388249 4.1:+4764160 None:intergenic
ATAGGATGCTTTGGTTTCAA+TGG 0.388725 4.1:+4764833 None:intergenic
CATAATTGTACCTCTTCATA+AGG 0.394411 4.1:+4764287 None:intergenic
TTCCTCTTGATTTCTTTGTC+GGG 0.407431 4.1:+4765899 None:intergenic
TTCTTCGGCATACATGTTAT+GGG 0.422963 4.1:-4765281 MS.gene06057:CDS
TGCAGACAACAAGGGTGTCT+TGG 0.424980 4.1:-4764765 MS.gene06057:CDS
ATGTCCTTAAATTCTGCCTC+TGG 0.426198 4.1:+4765103 None:intergenic
GCAAGATCTGCTTGAGATGC+AGG 0.431264 4.1:-4765719 MS.gene06057:CDS
AGCATGTTTCCTCCAACTCC+TGG 0.432342 4.1:+4763788 None:intergenic
TTTGGCTTTCAACAGCTCTT+CGG 0.438123 4.1:+4765660 None:intergenic
ATGATTGGTGCAGGTTAAGA+AGG 0.440565 4.1:-4765131 MS.gene06057:intron
AGAAGCAAGGAAGAGTATAC+TGG 0.445784 4.1:-4763819 MS.gene06057:CDS
TGTTCCTTGTCTTTCACCAT+AGG 0.447107 4.1:+4765352 None:intergenic
TGATTTCTTTGTCGGGATCT+CGG 0.448117 4.1:+4765906 None:intergenic
AGATGAGATCTTGAAGCAAA+AGG 0.457726 4.1:-4765638 MS.gene06057:CDS
AAAAGAATTCCGATCCAAAC+AGG 0.460635 4.1:-4763974 MS.gene06057:CDS
GGATGCATACAAGAAGGAAA+TGG 0.463280 4.1:-4763571 MS.gene06057:CDS
AATGATTCCAACATCATAGC+TGG 0.469777 4.1:-4765841 MS.gene06057:CDS
GGAGCAATATGCCCAAGAAA+TGG 0.469866 4.1:-4764171 MS.gene06057:CDS
GCTTGAGATGCAGGAAAAGA+TGG 0.475770 4.1:-4765710 MS.gene06057:CDS
TTAGACAGATTCTCAGAAAT+GGG 0.478209 4.1:+4765802 None:intergenic
ACACACTTGTTTCAATGAAG+TGG 0.480362 4.1:-4763763 MS.gene06057:CDS
GAATCTGTCTAACCCTAAGA+AGG 0.489907 4.1:-4765791 MS.gene06057:CDS
TCACCTGAATAGAATATATG+AGG 0.495351 4.1:+4763935 None:intergenic
ATGTTGGAATCATTGGTTGA+TGG 0.499815 4.1:+4765850 None:intergenic
AGACAAGGAACAAGAAAAGA+AGG 0.503199 4.1:-4765341 MS.gene06057:CDS
AGTATACTGGAGGAACGTCC+AGG 0.504758 4.1:-4763806 MS.gene06057:CDS
CAATGTACAGAATTTGCCTA+TGG 0.505456 4.1:-4765368 MS.gene06057:intron
AATTGAGGCAATGAAACTCT+TGG 0.505662 4.1:-4764960 MS.gene06057:CDS
AGGAAGCAGAAAGGCTCTCA+AGG 0.506919 4.1:-4765881 MS.gene06057:CDS
TGTTGGAATCATTGGTTGAT+GGG 0.514270 4.1:+4765851 None:intergenic
CTGGAGGAACGTCCAGGAGT+TGG 0.521217 4.1:-4763800 MS.gene06057:CDS
CATAACATGTATGCCGAAGA+AGG 0.530436 4.1:+4765283 None:intergenic
TCTTGTTTACTAATGATAGG+AGG 0.532413 4.1:-4764799 MS.gene06057:CDS
CAAGAAGAACAAGAAAGAGA+AGG 0.537336 4.1:-4764858 MS.gene06057:CDS
TGCAAATCTTATGAAGGAAG+AGG 0.537954 4.1:-4764117 MS.gene06057:CDS
GAGGAACGTCCAGGAGTTGG+AGG 0.538510 4.1:-4763797 MS.gene06057:CDS
TGTTATGGGTCAAAGATCAA+TGG 0.542670 4.1:-4765267 MS.gene06057:CDS
ATGATTCCAACATCATAGCT+GGG 0.548826 4.1:-4765840 MS.gene06057:CDS
GGCAATGAAACTCTTGGAAG+AGG 0.550214 4.1:-4764954 MS.gene06057:CDS
TGGCAAAGCATCTGAAGCAA+TGG 0.552222 4.1:-4763592 MS.gene06057:CDS
CTTCGGTCTTCTCTTTCTCG+AGG 0.553334 4.1:+4765677 None:intergenic
AGCTATTCTTGCAGACAACA+AGG 0.554530 4.1:-4764774 MS.gene06057:CDS
AATAGAATATATGAGGATGC+AGG 0.554919 4.1:+4763942 None:intergenic
CTTGTTTACTAATGATAGGA+GGG 0.555181 4.1:-4764798 MS.gene06057:CDS
GTTGGAATCATTGGTTGATG+GGG 0.557105 4.1:+4765852 None:intergenic
GTTTATGCAATTCAAACAAG+AGG 0.559702 4.1:-4764894 MS.gene06057:CDS
GTGAGGAAGATAAACAATTG+TGG 0.559951 4.1:-4763617 MS.gene06057:CDS
GGGACTAAATGGAAGACAGT+TGG 0.560896 4.1:-4765067 MS.gene06057:CDS
GAAGATAAACAATTGTGGAA+TGG 0.568238 4.1:-4763612 MS.gene06057:CDS
AAAGAAACAACAAAAGCCAA+AGG 0.574463 4.1:-4765755 MS.gene06057:CDS
AGAAGAGAAGAAGCCTTATG+AGG 0.578854 4.1:-4765041 MS.gene06057:CDS
ATCCCGACAAAGAAATCAAG+AGG 0.579809 4.1:-4765901 MS.gene06057:CDS
ATGAACTAACTAACCATGGT+GGG 0.581194 4.1:+4765553 None:intergenic
ACAGAAGCAGAAGACTGCTA+TGG 0.587399 4.1:-4764930 MS.gene06057:CDS
GAAATCAAGAGGAAGCAGAA+AGG 0.590805 4.1:-4765890 MS.gene06057:CDS
CCAAGATCACATCTGAAGAG+TGG 0.592813 4.1:-4764337 MS.gene06057:CDS
GGAGGCTGCAAATCTTATGA+AGG 0.596196 4.1:-4764123 MS.gene06057:CDS
TGCCTCCCCAGCTATGATGT+TGG 0.596788 4.1:+4765834 None:intergenic
AGCAATGGATGCATACAAGA+AGG 0.597525 4.1:-4763577 MS.gene06057:CDS
AGACAACAAGGGTGTCTTGG+AGG 0.604107 4.1:-4764762 MS.gene06057:intron
TGCATACAAGAAGGAAATGG+AGG 0.608817 4.1:-4763568 MS.gene06057:CDS
TTCCATGCAGCAAAGAAGCA+AGG 0.615026 4.1:-4763832 MS.gene06057:intron
GAAAGAATTCAAACCCACCA+TGG 0.617162 4.1:-4765566 MS.gene06057:intron
CGGGATCTCGGCAACTACGT+CGG 0.621564 4.1:+4765918 None:intergenic
ACTTGTTTCAATGAAGTGGA+AGG 0.625574 4.1:-4763759 MS.gene06057:intron
AATCTGTCTAACCCTAAGAA+GGG 0.626603 4.1:-4765790 MS.gene06057:CDS
CAAACTGAAGAAAGATGAGG+AGG 0.628380 4.1:-4764141 MS.gene06057:CDS
TTATTTGCAAGTAATTACAA+AGG 0.633815 4.1:-4764993 MS.gene06057:CDS
TTACAAACTGAAGAAAGATG+AGG 0.634789 4.1:-4764144 MS.gene06057:CDS
GCAATATGCCCAAGAAATGG+AGG 0.637518 4.1:-4764168 MS.gene06057:CDS
AGCAAGGAAGAGTATACTGG+AGG 0.646246 4.1:-4763816 MS.gene06057:CDS
AATGAACTAACTAACCATGG+TGG 0.650169 4.1:+4765552 None:intergenic
ATTTATATAGGATATGAGTG+AGG 0.652499 4.1:-4763634 MS.gene06057:intron
GATGAAGAACTCGAGAATCG+TGG 0.659301 4.1:-4765616 MS.gene06057:CDS
TTTGCCTATGGTGAAAGACA+AGG 0.660185 4.1:-4765356 MS.gene06057:CDS
GGTCAAAGATCAATGGCATG+AGG 0.662193 4.1:-4765260 MS.gene06057:intron
TTCCAACATCATAGCTGGGG+AGG 0.663327 4.1:-4765836 MS.gene06057:CDS
GGTTAAGAAGGAAAATCCAG+AGG 0.669344 4.1:-4765119 MS.gene06057:CDS
TGATTCCAACATCATAGCTG+GGG 0.673997 4.1:-4765839 MS.gene06057:CDS
AGAACTCGAGAATCGTGGCA+AGG 0.678863 4.1:-4765611 MS.gene06057:CDS
GCTATTCTTGCAGACAACAA+GGG 0.690298 4.1:-4764773 MS.gene06057:CDS
TTAGATGGCTAAGAAGAACA+GGG 0.692791 4.1:-4764192 MS.gene06057:intron
TCAGAAGAAGAAACATAACA+AGG 0.711427 4.1:-4764000 MS.gene06057:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTAATGAAAAACTAA+TGG + chr4.1:4765184-4765203 None:intergenic 10.0%
!! ATTGAATAAAATTTACTTAA+TGG - chr4.1:4765058-4765077 MS.gene06057:CDS 10.0%
!!! ACTATTATTATATATTGATT+TGG - chr4.1:4765774-4765793 MS.gene06057:CDS 10.0%
!!! CATTTTTACTATTATTTTAT+TGG - chr4.1:4763918-4763937 MS.gene06057:intron 10.0%
!! AATCATAATGTTAATTCTAT+TGG + chr4.1:4765041-4765060 None:intergenic 15.0%
!! CATATCCTATATAAATAAAT+GGG + chr4.1:4765802-4765821 None:intergenic 15.0%
!! TCATATCCTATATAAATAAA+TGG + chr4.1:4765803-4765822 None:intergenic 15.0%
!!! TTTTTAATTTTTAGGGTTTA+GGG - chr4.1:4763976-4763995 MS.gene06057:CDS 15.0%
!!! TTTTTTAATTTTTAGGGTTT+AGG - chr4.1:4763975-4763994 MS.gene06057:CDS 15.0%
!! AGACATTAAATGAATATTAC+AGG + chr4.1:4764019-4764038 None:intergenic 20.0%
!! GAATAAAATTTACTTAATGG+TGG - chr4.1:4765061-4765080 MS.gene06057:CDS 20.0%
!! TTATTTGCAAGTAATTACAA+AGG - chr4.1:4764447-4764466 MS.gene06057:intron 20.0%
!!! AGGTAATTGATTTTATGATT+GGG - chr4.1:4764698-4764717 MS.gene06057:intron 20.0%
!!! TTTTCTTGTTTACTAATGAT+AGG - chr4.1:4764638-4764657 MS.gene06057:intron 20.0%
! AAAAACTGAAAACATGATCA+AGG - chr4.1:4765401-4765420 MS.gene06057:intron 25.0%
! AAGAAGGAAAAGAAAAAGAA+TGG - chr4.1:4764115-4764134 MS.gene06057:CDS 25.0%
! AATAAGCTGTTTATTCAAAC+AGG + chr4.1:4764724-4764743 None:intergenic 25.0%
! AGAAGGAAAAGAAAAAGAAT+GGG - chr4.1:4764116-4764135 MS.gene06057:CDS 25.0%
! AGCAATCAAATCTAACTATT+AGG - chr4.1:4764217-4764236 MS.gene06057:intron 25.0%
! ATTTATATAGGATATGAGTG+AGG - chr4.1:4765806-4765825 MS.gene06057:CDS 25.0%
! TGGTTCCCATTTATTTATAT+AGG - chr4.1:4765794-4765813 MS.gene06057:CDS 25.0%
! TTTCTTACACTCTACTTAAT+TGG - chr4.1:4765219-4765238 MS.gene06057:intron 25.0%
!! AAGGACATTTCAAACATTTT+GGG - chr4.1:4764352-4764371 MS.gene06057:intron 25.0%
!! CTTAATTGGAAACTTTTAGA+TGG - chr4.1:4765233-4765252 MS.gene06057:intron 25.0%
!! GAAAGTCAATTTAACTTTGT+AGG - chr4.1:4765526-4765545 MS.gene06057:intron 25.0%
!! TAAGGACATTTCAAACATTT+TGG - chr4.1:4764351-4764370 MS.gene06057:intron 25.0%
!! TGAATTTATGGATTGATGAT+TGG - chr4.1:4764294-4764313 MS.gene06057:intron 25.0%
!!! GAGGTAATTGATTTTATGAT+TGG - chr4.1:4764697-4764716 MS.gene06057:intron 25.0%
AAAGAAACAACAAAAGCCAA+AGG - chr4.1:4763685-4763704 MS.gene06057:intron 30.0%
AAAGGAAAAACGTGAAATTG+AGG - chr4.1:4764465-4764484 MS.gene06057:intron 30.0%
AACAAGAAAAAAGCTGACAT+AGG + chr4.1:4764628-4764647 None:intergenic 30.0%
AATAGAATATATGAGGATGC+AGG + chr4.1:4765501-4765520 None:intergenic 30.0%
ACATGACAGAAGAACAAAAA+AGG - chr4.1:4765130-4765149 MS.gene06057:intron 30.0%
CATAAGTTGTGAGACTATTT+GGG + chr4.1:4764924-4764943 None:intergenic 30.0%
CATAATTGTACCTCTTCATA+AGG + chr4.1:4765156-4765175 None:intergenic 30.0%
CATCCTCATATATTCTATTC+AGG - chr4.1:4765502-4765521 MS.gene06057:intron 30.0%
CTTGTTTACTAATGATAGGA+GGG - chr4.1:4764642-4764661 MS.gene06057:intron 30.0%
GAAGATAAACAATTGTGGAA+TGG - chr4.1:4765828-4765847 MS.gene06057:CDS 30.0%
GATGTTGCAATGTGAATTTA+TGG - chr4.1:4764282-4764301 MS.gene06057:intron 30.0%
GTTTATGCAATTCAAACAAG+AGG - chr4.1:4764546-4764565 MS.gene06057:intron 30.0%
TCACCTGAATAGAATATATG+AGG + chr4.1:4765508-4765527 None:intergenic 30.0%
TCAGAAGAAGAAACATAACA+AGG - chr4.1:4765440-4765459 MS.gene06057:intron 30.0%
TGAAATGAACTAACTAACCA+TGG + chr4.1:4763894-4763913 None:intergenic 30.0%
TTACAAACTGAAGAAAGATG+AGG - chr4.1:4765296-4765315 MS.gene06057:CDS 30.0%
TTAGACAGATTCTCAGAAAT+GGG + chr4.1:4763641-4763660 None:intergenic 30.0%
! AGGACATTTCAAACATTTTG+GGG - chr4.1:4764353-4764372 MS.gene06057:intron 30.0%
! TCTTGTTTACTAATGATAGG+AGG - chr4.1:4764641-4764660 MS.gene06057:intron 30.0%
! TTTAGGGTTTGTGTTGAAAT+TGG - chr4.1:4763992-4764011 MS.gene06057:CDS 30.0%
AAAAGAATTCCGATCCAAAC+AGG - chr4.1:4765466-4765485 MS.gene06057:intron 35.0%
AAATCCAGAGGCAGAATTTA+AGG - chr4.1:4764333-4764352 MS.gene06057:CDS 35.0%
AATCTGTCTAACCCTAAGAA+GGG - chr4.1:4763650-4763669 MS.gene06057:intron 35.0%
AATGAACTAACTAACCATGG+TGG + chr4.1:4763891-4763910 None:intergenic 35.0%
AATGATTCCAACATCATAGC+TGG - chr4.1:4763599-4763618 MS.gene06057:CDS 35.0%
AATTGAGGCAATGAAACTCT+TGG - chr4.1:4764480-4764499 MS.gene06057:intron 35.0%
ACACACTTGTTTCAATGAAG+TGG - chr4.1:4765677-4765696 MS.gene06057:CDS 35.0%
ACTTGTTTCAATGAAGTGGA+AGG - chr4.1:4765681-4765700 MS.gene06057:CDS 35.0%
AGACAAGGAACAAGAAAAGA+AGG - chr4.1:4764099-4764118 MS.gene06057:CDS 35.0%
AGATGAGATCTTGAAGCAAA+AGG - chr4.1:4763802-4763821 MS.gene06057:CDS 35.0%
AGCTATGATGTTGGAATCAT+TGG + chr4.1:4763600-4763619 None:intergenic 35.0%
ATGAACTAACTAACCATGGT+GGG + chr4.1:4763890-4763909 None:intergenic 35.0%
ATGATTCCAACATCATAGCT+GGG - chr4.1:4763600-4763619 MS.gene06057:CDS 35.0%
CAAATCTATTGTTGCAAAGC+TGG - chr4.1:4765902-4765921 MS.gene06057:CDS 35.0%
CAAGAAGAACAAGAAAGAGA+AGG - chr4.1:4764582-4764601 MS.gene06057:intron 35.0%
CAATGTACAGAATTTGCCTA+TGG - chr4.1:4764072-4764091 MS.gene06057:CDS 35.0%
CTTCCTCTTGATTTCTTTGT+CGG + chr4.1:4763545-4763564 None:intergenic 35.0%
CTTGCAATTGCTCAAGAAAA+AGG - chr4.1:4765377-4765396 MS.gene06057:intron 35.0%
GAAATACCAAGCTGAAAAAG+AGG - chr4.1:4764423-4764442 MS.gene06057:intron 35.0%
GCATAAGTTGTGAGACTATT+TGG + chr4.1:4764925-4764944 None:intergenic 35.0%
GTGAGGAAGATAAACAATTG+TGG - chr4.1:4765823-4765842 MS.gene06057:CDS 35.0%
GTTAGACAGATTCTCAGAAA+TGG + chr4.1:4763642-4763661 None:intergenic 35.0%
TGAGAAAAAAAGGCCTTCTT+CGG - chr4.1:4764144-4764163 MS.gene06057:CDS 35.0%
TGCAAATCTTATGAAGGAAG+AGG - chr4.1:4765323-4765342 MS.gene06057:CDS 35.0%
TGTGAATGCTACACAACATT+TGG + chr4.1:4764969-4764988 None:intergenic 35.0%
TGTTATGGGTCAAAGATCAA+TGG - chr4.1:4764173-4764192 MS.gene06057:CDS 35.0%
TTAGATGGCTAAGAAGAACA+GGG - chr4.1:4765248-4765267 MS.gene06057:intron 35.0%
TTCCTCTTGATTTCTTTGTC+GGG + chr4.1:4763544-4763563 None:intergenic 35.0%
TTCTTCGGCATACATGTTAT+GGG - chr4.1:4764159-4764178 MS.gene06057:CDS 35.0%
TTGCTTCAAGATCTCATCTT+TGG + chr4.1:4763801-4763820 None:intergenic 35.0%
TTTAGATGGCTAAGAAGAAC+AGG - chr4.1:4765247-4765266 MS.gene06057:intron 35.0%
TTTGTAAGCCTCCATTTCTT+GGG + chr4.1:4765283-4765302 None:intergenic 35.0%
! ACAAAAAAGGCCTTATGAAG+AGG - chr4.1:4765143-4765162 MS.gene06057:intron 35.0%
! ATAGGATGCTTTGGTTTCAA+TGG + chr4.1:4764610-4764629 None:intergenic 35.0%
! ATGTTGGAATCATTGGTTGA+TGG + chr4.1:4763593-4763612 None:intergenic 35.0%
! CACATTTTGGACAACACTAA+AGG - chr4.1:4764987-4765006 MS.gene06057:CDS 35.0%
! CTTTTTCTTGAGCAATTGCA+AGG + chr4.1:4765379-4765398 None:intergenic 35.0%
! TGTGTAGCATTCACACATTT+TGG - chr4.1:4764974-4764993 MS.gene06057:CDS 35.0%
! TGTTGGAATCATTGGTTGAT+GGG + chr4.1:4763592-4763611 None:intergenic 35.0%
!! CAAACATTTTGGGGACTAAA+TGG - chr4.1:4764362-4764381 MS.gene06057:intron 35.0%
!! CTTCATGTTTCTGAAGTTTC+AGG + chr4.1:4765356-4765375 None:intergenic 35.0%
!!! AAGAAGGCCTTTTTTTCTCA+GGG + chr4.1:4764144-4764163 None:intergenic 35.0%
!!! AATAAGCCTCTTTTTCAGCT+TGG + chr4.1:4764432-4764451 None:intergenic 35.0%
AAAGCTGACATAGGATGCTT+TGG + chr4.1:4764619-4764638 None:intergenic 40.0%
AGCAATGGATGCATACAAGA+AGG - chr4.1:4765863-4765882 MS.gene06057:CDS 40.0%
AGCTATTCTTGCAGACAACA+AGG - chr4.1:4764666-4764685 MS.gene06057:intron 40.0%
ATCCCGACAAAGAAATCAAG+AGG - chr4.1:4763539-4763558 MS.gene06057:CDS 40.0%
ATGATTGGTGCAGGTTAAGA+AGG - chr4.1:4764309-4764328 MS.gene06057:CDS 40.0%
ATGTCCTTAAATTCTGCCTC+TGG + chr4.1:4764340-4764359 None:intergenic 40.0%
CAAACTGAAGAAAGATGAGG+AGG - chr4.1:4765299-4765318 MS.gene06057:CDS 40.0%
CATAACATGTATGCCGAAGA+AGG + chr4.1:4764160-4764179 None:intergenic 40.0%
CTTCTTCGGCATACATGTTA+TGG - chr4.1:4764158-4764177 MS.gene06057:CDS 40.0%
GAAAGAATTCAAACCCACCA+TGG - chr4.1:4763874-4763893 MS.gene06057:intron 40.0%
GAAATCAAGAGGAAGCAGAA+AGG - chr4.1:4763550-4763569 MS.gene06057:CDS 40.0%
GAATCTGTCTAACCCTAAGA+AGG - chr4.1:4763649-4763668 MS.gene06057:intron 40.0%
GCTATTCTTGCAGACAACAA+GGG - chr4.1:4764667-4764686 MS.gene06057:intron 40.0%
GCTTGGTATTTCTCCTCATA+AGG + chr4.1:4764415-4764434 None:intergenic 40.0%
GGATGCATACAAGAAGGAAA+TGG - chr4.1:4765869-4765888 MS.gene06057:CDS 40.0%
GGTTAAGAAGGAAAATCCAG+AGG - chr4.1:4764321-4764340 MS.gene06057:CDS 40.0%
GTTTGTAAGCCTCCATTTCT+TGG + chr4.1:4765284-4765303 None:intergenic 40.0%
TGATTCCAACATCATAGCTG+GGG - chr4.1:4763601-4763620 MS.gene06057:CDS 40.0%
TGATTTCTTTGTCGGGATCT+CGG + chr4.1:4763537-4763556 None:intergenic 40.0%
TGCATACAAGAAGGAAATGG+AGG - chr4.1:4765872-4765891 MS.gene06057:CDS 40.0%
TGTTCCTTGTCTTTCACCAT+AGG + chr4.1:4764091-4764110 None:intergenic 40.0%
TTTGCCTATGGTGAAAGACA+AGG - chr4.1:4764084-4764103 MS.gene06057:CDS 40.0%
! AGAAGAGAAGAAGCCTTATG+AGG - chr4.1:4764399-4764418 MS.gene06057:intron 40.0%
! AGAAGCAAGGAAGAGTATAC+TGG - chr4.1:4765621-4765640 MS.gene06057:CDS 40.0%
! ATGCAGCTTTTCCCTTCTTA+GGG + chr4.1:4763664-4763683 None:intergenic 40.0%
! GTTGGAATCATTGGTTGATG+GGG + chr4.1:4763591-4763610 None:intergenic 40.0%
! TATGAGGATGCAGGTCTTTT+AGG + chr4.1:4765492-4765511 None:intergenic 40.0%
! TATGGATTGATGATTGGTGC+AGG - chr4.1:4764300-4764319 MS.gene06057:CDS 40.0%
! TCTTTTAGGCCTGTTTGGAT+CGG + chr4.1:4765478-4765497 None:intergenic 40.0%
!! TTTGGCTTTCAACAGCTCTT+CGG + chr4.1:4763783-4763802 None:intergenic 40.0%
!!! GAAGAAGGCCTTTTTTTCTC+AGG + chr4.1:4764145-4764164 None:intergenic 40.0%
AACACTAAAGGCAGATGAGC+CGG - chr4.1:4764999-4765018 MS.gene06057:CDS 45.0%
ACAGAAGCAGAAGACTGCTA+TGG - chr4.1:4764510-4764529 MS.gene06057:intron 45.0%
ATGGGTGCCCTGAGAAAAAA+AGG - chr4.1:4764134-4764153 MS.gene06057:CDS 45.0%
CCAAGATCACATCTGAAGAG+TGG - chr4.1:4765103-4765122 MS.gene06057:CDS 45.0%
CCACTCTTCAGATGTGATCT+TGG + chr4.1:4765106-4765125 None:intergenic 45.0%
GATGAAGAACTCGAGAATCG+TGG - chr4.1:4763824-4763843 MS.gene06057:CDS 45.0%
GCAATATGCCCAAGAAATGG+AGG - chr4.1:4765272-4765291 MS.gene06057:CDS 45.0%
GCTTGAGATGCAGGAAAAGA+TGG - chr4.1:4763730-4763749 MS.gene06057:intron 45.0%
GGAGCAATATGCCCAAGAAA+TGG - chr4.1:4765269-4765288 MS.gene06057:CDS 45.0%
GGAGGCTGCAAATCTTATGA+AGG - chr4.1:4765317-4765336 MS.gene06057:CDS 45.0%
GGCAATGAAACTCTTGGAAG+AGG - chr4.1:4764486-4764505 MS.gene06057:intron 45.0%
GGGACTAAATGGAAGACAGT+TGG - chr4.1:4764373-4764392 MS.gene06057:intron 45.0%
GGTCAAAGATCAATGGCATG+AGG - chr4.1:4764180-4764199 MS.gene06057:CDS 45.0%
TGCTCGAAAGATCGTTCCTT+TGG + chr4.1:4763704-4763723 None:intergenic 45.0%
TTCCATGCAGCAAAGAAGCA+AGG - chr4.1:4765608-4765627 MS.gene06057:CDS 45.0%
TTCCTTGCTTCTTTGCTGCA+TGG + chr4.1:4765613-4765632 None:intergenic 45.0%
! AGCAAGGAAGAGTATACTGG+AGG - chr4.1:4765624-4765643 MS.gene06057:CDS 45.0%
! GATGCAGCTTTTCCCTTCTT+AGG + chr4.1:4763665-4763684 None:intergenic 45.0%
! TGGCAAAGCATCTGAAGCAA+TGG - chr4.1:4765848-4765867 MS.gene06057:CDS 45.0%
!!! ATATCATTTTTTTAATTTTT+AGG - chr4.1:4763968-4763987 MS.gene06057:CDS 5.0%
!!! TAATTTTTTTTTTTTTATGT+AGG - chr4.1:4765719-4765738 MS.gene06057:CDS 5.0%
!!! TATCATTTTTTTAATTTTTA+GGG - chr4.1:4763969-4763988 MS.gene06057:CDS 5.0%
AGAACTCGAGAATCGTGGCA+AGG - chr4.1:4763829-4763848 MS.gene06057:intron 50.0%
AGATGAGCCGGATCGTGTTT+GGG - chr4.1:4765011-4765030 MS.gene06057:CDS 50.0%
AGCATGTTTCCTCCAACTCC+TGG + chr4.1:4765655-4765674 None:intergenic 50.0%
AGGAAGCAGAAAGGCTCTCA+AGG - chr4.1:4763559-4763578 MS.gene06057:CDS 50.0%
AGTATACTGGAGGAACGTCC+AGG - chr4.1:4765634-4765653 MS.gene06057:CDS 50.0%
CTTCGGTCTTCTCTTTCTCG+AGG + chr4.1:4763766-4763785 None:intergenic 50.0%
GCAAGATCTGCTTGAGATGC+AGG - chr4.1:4763721-4763740 MS.gene06057:intron 50.0%
TTCCAACATCATAGCTGGGG+AGG - chr4.1:4763604-4763623 MS.gene06057:CDS 50.0%
! GCAGGTCTTTTAGGCCTGTT+TGG + chr4.1:4765483-4765502 None:intergenic 50.0%
!! AGACAACAAGGGTGTCTTGG+AGG - chr4.1:4764678-4764697 MS.gene06057:intron 50.0%
!! ATGGTGGTGTTGTGCTTTGC+AGG - chr4.1:4765077-4765096 MS.gene06057:CDS 50.0%
!! TGCAGACAACAAGGGTGTCT+TGG - chr4.1:4764675-4764694 MS.gene06057:intron 50.0%
CAGATGAGCCGGATCGTGTT+TGG - chr4.1:4765010-4765029 MS.gene06057:CDS 55.0%
GATGAGCCGGATCGTGTTTG+GGG - chr4.1:4765012-4765031 MS.gene06057:CDS 55.0%
TGCCTCCCCAGCTATGATGT+TGG + chr4.1:4763609-4763628 None:intergenic 55.0%
TGGACACCCCAAACACGATC+CGG + chr4.1:4765021-4765040 None:intergenic 55.0%
CGGGATCTCGGCAACTACGT+CGG + chr4.1:4763525-4763544 None:intergenic 60.0%
CTGGAGGAACGTCCAGGAGT+TGG - chr4.1:4765640-4765659 MS.gene06057:CDS 60.0%
GAGGAACGTCCAGGAGTTGG+AGG - chr4.1:4765643-4765662 MS.gene06057:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 4763518 4765944 4763518 ID=MS.gene06057
chr4.1 mRNA 4763518 4765944 4763518 ID=MS.gene06057.t1;Parent=MS.gene06057
chr4.1 exon 4765567 4765944 4765567 ID=MS.gene06057.t1.exon1;Parent=MS.gene06057.t1
chr4.1 CDS 4765567 4765944 4765567 ID=cds.MS.gene06057.t1;Parent=MS.gene06057.t1
chr4.1 exon 4765261 4765380 4765261 ID=MS.gene06057.t1.exon2;Parent=MS.gene06057.t1
chr4.1 CDS 4765261 4765380 4765261 ID=cds.MS.gene06057.t1;Parent=MS.gene06057.t1
chr4.1 exon 4764763 4765140 4764763 ID=MS.gene06057.t1.exon3;Parent=MS.gene06057.t1
chr4.1 CDS 4764763 4765140 4764763 ID=cds.MS.gene06057.t1;Parent=MS.gene06057.t1
chr4.1 exon 4764298 4764363 4764298 ID=MS.gene06057.t1.exon4;Parent=MS.gene06057.t1
chr4.1 CDS 4764298 4764363 4764298 ID=cds.MS.gene06057.t1;Parent=MS.gene06057.t1
chr4.1 exon 4763939 4764210 4763939 ID=MS.gene06057.t1.exon5;Parent=MS.gene06057.t1
chr4.1 CDS 4763939 4764210 4763939 ID=cds.MS.gene06057.t1;Parent=MS.gene06057.t1
chr4.1 exon 4763760 4763844 4763760 ID=MS.gene06057.t1.exon6;Parent=MS.gene06057.t1
chr4.1 CDS 4763760 4763844 4763760 ID=cds.MS.gene06057.t1;Parent=MS.gene06057.t1
chr4.1 exon 4763518 4763646 4763518 ID=MS.gene06057.t1.exon7;Parent=MS.gene06057.t1
chr4.1 CDS 4763518 4763646 4763518 ID=cds.MS.gene06057.t1;Parent=MS.gene06057.t1
Gene Sequence

>MS.gene06057

ATGGCCGACGTAGTTGCCGAGATCCCGACAAAGAAATCAAGAGGAAGCAGAAAGGCTCTCAAGGAGAAAACCCCATCAACCAATGATTCCAACATCATAGCTGGGGAGGCAGCTATTTCTCCCATTTCTGAGAATCTGTCTAACCCTAAGAAGGGAAAAGCTGCATCAAAGAAACAACAAAAGCCAAAGGAACGATCTTTCGAGCAAGATCTGCTTGAGATGCAGGAAAAGATGGAGCAGTTGCGCCTCGAGAAAGAGAAGACCGAAGAGCTGTTGAAAGCCAAAGATGAGATCTTGAAGCAAAAGGATGAAGAACTCGAGAATCGTGGCAAGGAGCTTAAGAAATTGCAGAAATTGAAAGAATTCAAACCCACCATGGTTAGTTAGTTCATTTCAATTTCATTTTTACTATTATTTTATTGGCTTAAATATGTTTTTAATCGCGTAAATATATCATTTTTTTAATTTTTAGGGTTTAGGGTTTGTGTTGAAATTGGTCCTGTAATATTCATTTAATGTCTTTATATTTATCTCAATTTCTGTATCTTATTTCACAATGTACAGAATTTGCCTATGGTGAAAGACAAGGAACAAGAAAAGAAGGAAAAGAAAAAGAATGGGTGCCCTGAGAAAAAAAGGCCTTCTTCGGCATACATGTTATGGGTCAAAGATCAATGGCATGAGGTAAATAGTAGTATAAGCAATCAAATCTAACTATTAGGATAATGATTAATTAGATTTATTTTTATTTTCTTTTAATTTTTGATGTTGCAATGTGAATTTATGGATTGATGATTGGTGCAGGTTAAGAAGGAAAATCCAGAGGCAGAATTTAAGGACATTTCAAACATTTTGGGGACTAAATGGAAGACAGTTGGTGAAGAAGAGAAGAAGCCTTATGAGGAGAAATACCAAGCTGAAAAAGAGGCTTATTTGCAAGTAATTACAAAGGAAAAACGTGAAATTGAGGCAATGAAACTCTTGGAAGAGGAACAGAAGCAGAAGACTGCTATGGAATTACTTGAACAGTTTATGCAATTCAAACAAGAGGCAGAAAAAGAGAGCAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCAAAGCATCCTATGTCAGCTTTTTTCTTGTTTACTAATGATAGGAGGGCAGCTATTCTTGCAGACAACAAGGGTGTCTTGGAGGTAATTGATTTTATGATTGGGCCTGTTTGAATAAACAGCTTATTAGCAGCTTATAGCACAAGCGCTTATATGATAAGCGCTATATAAGCGCTTGTGTATGCTATAAGCTTTGCATAAGCTATTATTATAGAAAAAGATGAAATTATGTTGAATTGTTTTAGTATGTATGCTTTGAAAAATGCTAATTAAAAAAATTATCATAAGTTATTTTAATAATTTCTCCCAAATAGTCTCACAACTTATGCGAGTAGTTAAGCTCAAATAAGCCAAATGTTGTGTAGCATTCACACATTTTGGACAACACTAAAGGCAGATGAGCCGGATCGTGTTTGGGGTGTCCAATAGAATTAACATTATGATTGAATAAAATTTACTTAATGGTGGTGTTGTGCTTTGCAGGTTTCCAAGATCACATCTGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGGCCTTATGAAGAGGTACAATTATGCAAAACCATTAGTTTTTCATTAATATTTTTTGTAGTTATTTGATTTCTTACACTCTACTTAATTGGAAACTTTTAGATGGCTAAGAAGAACAGGGAGCAATATGCCCAAGAAATGGAGGCTTACAAACTGAAGAAAGATGAGGAGGCTGCAAATCTTATGAAGGAAGAGGAAGAACACCTGAAACTTCAGAAACATGAAGCCTTGCAATTGCTCAAGAAAAAGGAAAAAACTGAAAACATGATCAAGGAAACAAAATTGAATCGTCAGAAGAAGAAACATAACAAGGAAGAAAAGAATTCCGATCCAAACAGGCCTAAAAGACCTGCATCCTCATATATTCTATTCAGGTGAAAGTCAATTTAACTTTGTAGGAAACATTGTAAAATTATTATTACATTATGATGTGTAAATTAACATATACAAAAATTTAATTCCATGCAGCAAAGAAGCAAGGAAGAGTATACTGGAGGAACGTCCAGGAGTTGGAGGAAACATGCTTAACACACTTGTTTCAATGAAGTGGAAGGTATTGTTTTGATTTTTAATTTTTTTTTTTTTATGTAGGTATATTTGTTTTGATTGAACATCATTTTTCACACTATTATTATATATTGATTTGGTTCCCATTTATTTATATAGGATATGAGTGAGGAAGATAAACAATTGTGGAATGGCAAAGCATCTGAAGCAATGGATGCATACAAGAAGGAAATGGAGGAATACAACAAATCTATTGTTGCAAAGCTGGAGCAGAAAACCAATAAGTAA

Protein sequence

>MS.gene06057.t1

MADVVAEIPTKKSRGSRKALKEKTPSTNDSNIIAGEAAISPISENLSNPKKGKAASKKQQKPKERSFEQDLLEMQEKMEQLRLEKEKTEELLKAKDEILKQKDEELENRGKELKKLQKLKEFKPTMNLPMVKDKEQEKKEKKKNGCPEKKRPSSAYMLWVKDQWHEVKKENPEAEFKDISNILGTKWKTVGEEEKKPYEEKYQAEKEAYLQVITKEKREIEAMKLLEEEQKQKTAMELLEQFMQFKQEAEKESKKNKKEKDPLKPKHPMSAFFLFTNDRRAAILADNKGVLEVSKITSEEWKNMTEEQKRPYEEMAKKNREQYAQEMEAYKLKKDEEAANLMKEEEEHLKLQKHEALQLLKKKEKTENMIKETKLNRQKKKHNKEEKNSDPNRPKRPASSYILFSKEARKSILEERPGVGGNMLNTLVSMKWKDMSEEDKQLWNGKASEAMDAYKKEMEEYNKSIVAKLEQKTNK