Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21020.t1 | XP_003591219.1 | 92.8 | 276 | 13 | 1 | 1 | 276 | 3 | 271 | 1.60E-121 | 445.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21020.t1 | G7I9H9 | 92.8 | 276 | 13 | 1 | 1 | 276 | 3 | 271 | 1.2e-121 | 445.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056007 | MS.gene21020 | 0.863752 | 1.99E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21020.t1 | MTR_1g084040 | 96.014 | 276 | 4 | 1 | 1 | 276 | 3 | 271 | 0.0 | 539 |
| MS.gene21020.t1 | MTR_7g112110 | 74.510 | 204 | 52 | 0 | 1 | 204 | 5 | 208 | 4.97e-114 | 327 |
| MS.gene21020.t1 | MTR_7g112120 | 70.874 | 206 | 56 | 2 | 1 | 202 | 1 | 206 | 7.81e-105 | 304 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21020.t1 | AT1G56423 | 56.296 | 270 | 115 | 2 | 1 | 268 | 1 | 269 | 4.48e-108 | 314 |
| MS.gene21020.t1 | AT1G56423 | 57.090 | 268 | 98 | 4 | 1 | 268 | 1 | 251 | 2.28e-107 | 311 |
Find 71 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATTTATGATGTGATTAA+TGG | 0.186748 | 1.3:+59771257 | MS.gene21020:CDS |
| GGCACTTTGTTTGGTGCATA+TGG | 0.213119 | 1.3:+59771143 | MS.gene21020:CDS |
| ATAACCGAGCCTTTCTGTTT+TGG | 0.259791 | 1.3:-59769716 | None:intergenic |
| CGTCAAGCCAAGCGGATTAT+AGG | 0.285681 | 1.3:+59771038 | MS.gene21020:CDS |
| AGGGGTACTGGCACTTTGTT+TGG | 0.287164 | 1.3:+59771134 | MS.gene21020:CDS |
| TGACATGGGCTCTGGAACTT+TGG | 0.287746 | 1.3:+59770833 | MS.gene21020:CDS |
| TCACCATCAAAAGAAGTATA+TGG | 0.340203 | 1.3:-59771359 | None:intergenic |
| CCTTGTTGACGCTGTTAGTC+AGG | 0.341491 | 1.3:+59770947 | MS.gene21020:CDS |
| ATAGGCCCCATCATCTCTTC+TGG | 0.347557 | 1.3:+59771056 | MS.gene21020:CDS |
| GCACTTTGTTTGGTGCATAT+GGG | 0.347749 | 1.3:+59771144 | MS.gene21020:CDS |
| CAATCACAGAAGGGTTCCTT+AGG | 0.357038 | 1.3:+59771114 | MS.gene21020:CDS |
| ATCCAATGTGGATGAATCTA+TGG | 0.357729 | 1.3:+59771463 | MS.gene21020:CDS |
| GATGGCGAAGTTCCTACTTT+TGG | 0.378746 | 1.3:+59771395 | MS.gene21020:CDS |
| TGCGCAGAAAGAAAGTAAAA+AGG | 0.400376 | 1.3:+59770998 | MS.gene21020:CDS |
| AGTTGGGTTGGTGGCAGAAT+AGG | 0.401598 | 1.3:+59771230 | MS.gene21020:CDS |
| TAATGGAGTGCATTTGTTGC+TGG | 0.410499 | 1.3:+59771274 | MS.gene21020:CDS |
| GGGAGATGATTCATATGAAC+TGG | 0.421355 | 1.3:-59771432 | None:intergenic |
| GAGCAAAGCCTTGGTAGAAT+TGG | 0.427351 | 1.3:+59771182 | MS.gene21020:CDS |
| GGTAGAATTGGCTATCTTGT+TGG | 0.428206 | 1.3:+59771194 | MS.gene21020:CDS |
| CACTTTGTTTGGTGCATATG+GGG | 0.431463 | 1.3:+59771145 | MS.gene21020:CDS |
| TTGGAAGTCACATGGGCAGT+TGG | 0.444851 | 1.3:+59771213 | MS.gene21020:CDS |
| AGTCACATGGGCAGTTGGGT+TGG | 0.461400 | 1.3:+59771218 | MS.gene21020:CDS |
| GAAGGGTTCCTTAGGGGTAC+TGG | 0.461508 | 1.3:+59771122 | MS.gene21020:CDS |
| TCAGAGCTATGAAACAAATT+CGG | 0.464660 | 1.3:+59771490 | MS.gene21020:CDS |
| TTGCTGGAATTTGTTCAAAC+AGG | 0.465120 | 1.3:+59771290 | MS.gene21020:CDS |
| CACATGGGCAGTTGGGTTGG+TGG | 0.487418 | 1.3:+59771221 | MS.gene21020:CDS |
| TGGAAGTCACATGGGCAGTT+GGG | 0.489000 | 1.3:+59771214 | MS.gene21020:CDS |
| TAATGTGAACTTTCCACTCT+GGG | 0.493495 | 1.3:-59770799 | None:intergenic |
| CTTGTTGACGCTGTTAGTCA+GGG | 0.493758 | 1.3:+59770948 | MS.gene21020:CDS |
| CCCCATCATCTCTTCTGGAT+GGG | 0.496655 | 1.3:+59771061 | MS.gene21020:CDS |
| TTCTTCGGGGAGCAAAGCCT+TGG | 0.501943 | 1.3:+59771173 | MS.gene21020:CDS |
| TTCGAAGCTATTTATTATGG+TGG | 0.502729 | 1.3:+59771089 | MS.gene21020:CDS |
| TTCCATAGATTCATCCACAT+TGG | 0.502813 | 1.3:-59771465 | None:intergenic |
| TCCACATTGGATTCTTCAGT+GGG | 0.511116 | 1.3:-59771452 | None:intergenic |
| GTCCCATCCAGAAGAGATGA+TGG | 0.512466 | 1.3:-59771063 | None:intergenic |
| ATCGTTGCTCTTAGCATCAC+AGG | 0.518180 | 1.3:+59769756 | MS.gene21020:CDS |
| GCCCCATCATCTCTTCTGGA+TGG | 0.519007 | 1.3:+59771060 | MS.gene21020:CDS |
| CATGGATTTCCAAAACAGAA+AGG | 0.523987 | 1.3:+59769707 | None:intergenic |
| ATAATGTGAACTTTCCACTC+TGG | 0.524601 | 1.3:-59770800 | None:intergenic |
| CTTTCAGAGCTGCCAAAAGT+AGG | 0.529925 | 1.3:-59771407 | None:intergenic |
| CTATCTTGTTGGAAGTCACA+TGG | 0.536263 | 1.3:+59771205 | MS.gene21020:CDS |
| AACTTTGGCATGTGCTGTCA+AGG | 0.544459 | 1.3:+59770848 | MS.gene21020:CDS |
| ACTTTGTTTGGTGCATATGG+GGG | 0.548774 | 1.3:+59771146 | MS.gene21020:CDS |
| AATCACAGAAGGGTTCCTTA+GGG | 0.565296 | 1.3:+59771115 | MS.gene21020:CDS |
| TTGACGAGAAGCCAATTTCG+CGG | 0.567474 | 1.3:-59771021 | None:intergenic |
| TATGGTGGTACAATCACAGA+AGG | 0.573148 | 1.3:+59771104 | MS.gene21020:CDS |
| TTGGCATGTGCTGTCAAGGA+AGG | 0.578441 | 1.3:+59770852 | MS.gene21020:CDS |
| GATGGGGCCTATAATCCGCT+TGG | 0.579892 | 1.3:-59771045 | None:intergenic |
| TCCCATCCAGAAGAGATGAT+GGG | 0.583665 | 1.3:-59771062 | None:intergenic |
| ATCCACATTGGATTCTTCAG+TGG | 0.584833 | 1.3:-59771453 | None:intergenic |
| ACAAAGTGCCAGTACCCCTA+AGG | 0.589908 | 1.3:-59771130 | None:intergenic |
| GGTGAAGTTCCGACTTATGA+TGG | 0.590596 | 1.3:+59771377 | MS.gene21020:CDS |
| CCTGACTAACAGCGTCAACA+AGG | 0.594656 | 1.3:-59770947 | None:intergenic |
| AGGGAGCTTATTGGAGAGGA+GGG | 0.596431 | 1.3:+59770771 | MS.gene21020:CDS |
| CAGGGAGCTTATTGGAGAGG+AGG | 0.601016 | 1.3:+59770770 | MS.gene21020:CDS |
| ATTTCCAAAACAGAAAGGCT+CGG | 0.616084 | 1.3:+59769712 | MS.gene21020:CDS |
| CCCATCCAGAAGAGATGATG+GGG | 0.628978 | 1.3:-59771061 | None:intergenic |
| TTGTTGACGCTGTTAGTCAG+GGG | 0.644595 | 1.3:+59770949 | MS.gene21020:CDS |
| TATCTTGTTGGAAGTCACAT+GGG | 0.645553 | 1.3:+59771206 | MS.gene21020:CDS |
| ATGCAGGGAGCTTATTGGAG+AGG | 0.646429 | 1.3:+59770767 | MS.gene21020:CDS |
| GGAACTTCGCCATCATAAGT+CGG | 0.647022 | 1.3:-59771386 | None:intergenic |
| TGTGATGCTAAGAGCAACGA+TGG | 0.668664 | 1.3:-59769754 | None:intergenic |
| TGGCTTCTCGTCAAGCCAAG+CGG | 0.674972 | 1.3:+59771030 | MS.gene21020:CDS |
| ATGGTGGTACAATCACAGAA+GGG | 0.678014 | 1.3:+59771105 | MS.gene21020:CDS |
| CAAGATAGCCAATTCTACCA+AGG | 0.680375 | 1.3:-59771190 | None:intergenic |
| ATCACAGAAGGGTTCCTTAG+GGG | 0.680466 | 1.3:+59771116 | MS.gene21020:CDS |
| CTGACTAACAGCGTCAACAA+GGG | 0.688363 | 1.3:-59770946 | None:intergenic |
| GATGCTAAGAGCAACGATGG+CGG | 0.700912 | 1.3:-59769751 | None:intergenic |
| GAGGAGGGGTCATCCCAGAG+TGG | 0.705445 | 1.3:+59770786 | MS.gene21020:CDS |
| TCCCACTGAAGAATCCAATG+TGG | 0.713284 | 1.3:+59771451 | MS.gene21020:CDS |
| GGGAGCTTATTGGAGAGGAG+GGG | 0.730602 | 1.3:+59770772 | MS.gene21020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATAAAAATACAAAAAATA+TGG | - | chr1.3:59770582-59770601 | None:intergenic | 10.0% |
| !! | ATATATCATTATATTTATTC+TGG | + | chr1.3:59770499-59770518 | MS.gene21020:intron | 10.0% |
| !! | AATGATAAAATGAAATTGAA+TGG | + | chr1.3:59770443-59770462 | MS.gene21020:intron | 15.0% |
| !! | AGAAAATGAAGAAATATAAT+TGG | + | chr1.3:59770404-59770423 | MS.gene21020:intron | 15.0% |
| !! | TAGTAAATAAAATGATCAAT+TGG | - | chr1.3:59769844-59769863 | None:intergenic | 15.0% |
| !!! | ATTATATTTCTTCATTTTCT+CGG | - | chr1.3:59770404-59770423 | None:intergenic | 15.0% |
| !! | ATGATTTATGATGTGATTAA+TGG | + | chr1.3:59771257-59771276 | MS.gene21020:CDS | 20.0% |
| !! | TTATTGGAATGAAATGAAAA+TGG | + | chr1.3:59770550-59770569 | MS.gene21020:intron | 20.0% |
| !!! | ATTATTAAACTGTTTTGACA+TGG | + | chr1.3:59770818-59770837 | MS.gene21020:CDS | 20.0% |
| !!! | ATTGATGATTTTTCTGATTT+TGG | + | chr1.3:59769881-59769900 | MS.gene21020:intron | 20.0% |
| !!! | ATTTTCATTTCATTCCAATA+AGG | - | chr1.3:59770551-59770570 | None:intergenic | 20.0% |
| !!! | TTATTAAACTGTTTTGACAT+GGG | + | chr1.3:59770819-59770838 | MS.gene21020:CDS | 20.0% |
| !!! | TTGATGATTTTTCTGATTTT+GGG | + | chr1.3:59769882-59769901 | MS.gene21020:intron | 20.0% |
| !!! | TTTTCATTTCATTCCAATAA+GGG | - | chr1.3:59770550-59770569 | None:intergenic | 20.0% |
| !!! | TTTTTCGAAGCTATTTATTA+TGG | + | chr1.3:59771086-59771105 | MS.gene21020:CDS | 20.0% |
| ! | AAAATAGTCACATATCATTG+TGG | - | chr1.3:59770344-59770363 | None:intergenic | 25.0% |
| ! | ATAAGCTTAATTAGTGTAAG+AGG | - | chr1.3:59769916-59769935 | None:intergenic | 25.0% |
| ! | TAATTGGACATGTATAGAAT+TGG | + | chr1.3:59770420-59770439 | MS.gene21020:intron | 25.0% |
| ATTACATTGTTATGGCATAG+CGG | - | chr1.3:59770203-59770222 | None:intergenic | 30.0% | |
| GGCTACATATAGTAATGTTT+AGG | - | chr1.3:59770003-59770022 | None:intergenic | 30.0% | |
| TCAATGTTGAATTCACTGTT+TGG | + | chr1.3:59770135-59770154 | MS.gene21020:intron | 30.0% | |
| TCAGAGCTATGAAACAAATT+CGG | + | chr1.3:59771490-59771509 | MS.gene21020:CDS | 30.0% | |
| TTCGAAGCTATTTATTATGG+TGG | + | chr1.3:59771089-59771108 | MS.gene21020:CDS | 30.0% | |
| ! | GATTGAATCTAGAATTCTGT+TGG | + | chr1.3:59770251-59770270 | MS.gene21020:intron | 30.0% |
| ! | TCACCATCAAAAGAAGTATA+TGG | - | chr1.3:59771362-59771381 | None:intergenic | 30.0% |
| ATAATGTGAACTTTCCACTC+TGG | - | chr1.3:59770803-59770822 | None:intergenic | 35.0% | |
| ATCCAATGTGGATGAATCTA+TGG | + | chr1.3:59771463-59771482 | MS.gene21020:CDS | 35.0% | |
| ATGGCAGCATTACATTGTTA+TGG | - | chr1.3:59770211-59770230 | None:intergenic | 35.0% | |
| ATTCCAATAAGGGAGGAATA+TGG | - | chr1.3:59770540-59770559 | None:intergenic | 35.0% | |
| ATTTCCAAAACAGAAAGGCT+CGG | + | chr1.3:59769712-59769731 | MS.gene21020:CDS | 35.0% | |
| CTACTCATGTTGAAAAAGCA+AGG | + | chr1.3:59770904-59770923 | MS.gene21020:CDS | 35.0% | |
| TAATGTGAACTTTCCACTCT+GGG | - | chr1.3:59770802-59770821 | None:intergenic | 35.0% | |
| TATCTTGTTGGAAGTCACAT+GGG | + | chr1.3:59771206-59771225 | MS.gene21020:CDS | 35.0% | |
| TCATATTTGTGCTTGTGATC+TGG | + | chr1.3:59769944-59769963 | MS.gene21020:intron | 35.0% | |
| TCATTTCATTCCAATAAGGG+AGG | - | chr1.3:59770547-59770566 | None:intergenic | 35.0% | |
| TGCGCAGAAAGAAAGTAAAA+AGG | + | chr1.3:59770998-59771017 | MS.gene21020:CDS | 35.0% | |
| TTCCAATAAGGGAGGAATAT+GGG | - | chr1.3:59770539-59770558 | None:intergenic | 35.0% | |
| TTCCATAGATTCATCCACAT+TGG | - | chr1.3:59771468-59771487 | None:intergenic | 35.0% | |
| ! | CAGTTTGCTTCAGAACAATA+AGG | + | chr1.3:59770165-59770184 | MS.gene21020:intron | 35.0% |
| ! | GCTCCATATACTTCTTTTGA+TGG | + | chr1.3:59771356-59771375 | MS.gene21020:CDS | 35.0% |
| ! | TGACATTCGATTTGTGATCA+GGG | + | chr1.3:59769809-59769828 | MS.gene21020:intron | 35.0% |
| ! | TTGACATTCGATTTGTGATC+AGG | + | chr1.3:59769808-59769827 | MS.gene21020:intron | 35.0% |
| ! | TTGCTGGAATTTGTTCAAAC+AGG | + | chr1.3:59771290-59771309 | MS.gene21020:CDS | 35.0% |
| AACAACACGTGATCTCACTT+AGG | - | chr1.3:59770024-59770043 | None:intergenic | 40.0% | |
| AAGTAAAAAGGCCGCGAAAT+TGG | + | chr1.3:59771010-59771029 | MS.gene21020:CDS | 40.0% | |
| AATCACAGAAGGGTTCCTTA+GGG | + | chr1.3:59771115-59771134 | MS.gene21020:CDS | 40.0% | |
| ACAAGATACTCCACAGTTCT+CGG | + | chr1.3:59769972-59769991 | MS.gene21020:intron | 40.0% | |
| ATCCACATTGGATTCTTCAG+TGG | - | chr1.3:59771456-59771475 | None:intergenic | 40.0% | |
| ATCCCATATTCCTCCCTTAT+TGG | + | chr1.3:59770534-59770553 | MS.gene21020:intron | 40.0% | |
| ATGGTGGTACAATCACAGAA+GGG | + | chr1.3:59771105-59771124 | MS.gene21020:CDS | 40.0% | |
| CAAGATAGCCAATTCTACCA+AGG | - | chr1.3:59771193-59771212 | None:intergenic | 40.0% | |
| CTATCTTGTTGGAAGTCACA+TGG | + | chr1.3:59771205-59771224 | MS.gene21020:CDS | 40.0% | |
| GAAAAATGCAGGGAGCTTAT+TGG | + | chr1.3:59770762-59770781 | MS.gene21020:CDS | 40.0% | |
| GCTTTCAGCTGAAAAATGCA+GGG | + | chr1.3:59770752-59770771 | MS.gene21020:intron | 40.0% | |
| GGGAGATGATTCATATGAAC+TGG | - | chr1.3:59771435-59771454 | None:intergenic | 40.0% | |
| GGTAGAATTGGCTATCTTGT+TGG | + | chr1.3:59771194-59771213 | MS.gene21020:CDS | 40.0% | |
| TATGGTGGTACAATCACAGA+AGG | + | chr1.3:59771104-59771123 | MS.gene21020:CDS | 40.0% | |
| TCCACATTGGATTCTTCAGT+GGG | - | chr1.3:59771455-59771474 | None:intergenic | 40.0% | |
| TGCTTTCAGCTGAAAAATGC+AGG | + | chr1.3:59770751-59770770 | MS.gene21020:intron | 40.0% | |
| ! | ATAACCGAGCCTTTCTGTTT+TGG | - | chr1.3:59769719-59769738 | None:intergenic | 40.0% |
| ! | ATGTTTTGCTGCATCTGTTG+GGG | - | chr1.3:59770979-59770998 | None:intergenic | 40.0% |
| ! | CATACAGTCTTTTGTTGCTG+AGG | - | chr1.3:59770620-59770639 | None:intergenic | 40.0% |
| ! | CATGTTTTGCTGCATCTGTT+GGG | - | chr1.3:59770980-59770999 | None:intergenic | 40.0% |
| ! | CGGAGTGAACAAGTTTTCAA+GGG | - | chr1.3:59770384-59770403 | None:intergenic | 40.0% |
| ! | GACATTCGATTTGTGATCAG+GGG | + | chr1.3:59769810-59769829 | MS.gene21020:intron | 40.0% |
| ! | TAATGGAGTGCATTTGTTGC+TGG | + | chr1.3:59771274-59771293 | MS.gene21020:CDS | 40.0% |
| ! | TCGGAGTGAACAAGTTTTCA+AGG | - | chr1.3:59770385-59770404 | None:intergenic | 40.0% |
| !! | ACTTTGTTTGGTGCATATGG+GGG | + | chr1.3:59771146-59771165 | MS.gene21020:CDS | 40.0% |
| !! | CACTTTGTTTGGTGCATATG+GGG | + | chr1.3:59771145-59771164 | MS.gene21020:CDS | 40.0% |
| !! | GCACTTTGTTTGGTGCATAT+GGG | + | chr1.3:59771144-59771163 | MS.gene21020:CDS | 40.0% |
| AACTTTGGCATGTGCTGTCA+AGG | + | chr1.3:59770848-59770867 | MS.gene21020:CDS | 45.0% | |
| AGACCATCAACTACACTGTC+TGG | + | chr1.3:59770699-59770718 | MS.gene21020:intron | 45.0% | |
| ATCACAGAAGGGTTCCTTAG+GGG | + | chr1.3:59771116-59771135 | MS.gene21020:CDS | 45.0% | |
| ATCGTTGCTCTTAGCATCAC+AGG | + | chr1.3:59769756-59769775 | MS.gene21020:CDS | 45.0% | |
| CAATCACAGAAGGGTTCCTT+AGG | + | chr1.3:59771114-59771133 | MS.gene21020:CDS | 45.0% | |
| CTACCAGACAGTGTAGTTGA+TGG | - | chr1.3:59770705-59770724 | None:intergenic | 45.0% | |
| CTGACTAACAGCGTCAACAA+GGG | - | chr1.3:59770949-59770968 | None:intergenic | 45.0% | |
| CTTGTTGACGCTGTTAGTCA+GGG | + | chr1.3:59770948-59770967 | MS.gene21020:CDS | 45.0% | |
| CTTTCAGAGCTGCCAAAAGT+AGG | - | chr1.3:59771410-59771429 | None:intergenic | 45.0% | |
| GAGCAAAGCCTTGGTAGAAT+TGG | + | chr1.3:59771182-59771201 | MS.gene21020:CDS | 45.0% | |
| GGAACTTCGCCATCATAAGT+CGG | - | chr1.3:59771389-59771408 | None:intergenic | 45.0% | |
| GGTGAAGTTCCGACTTATGA+TGG | + | chr1.3:59771377-59771396 | MS.gene21020:CDS | 45.0% | |
| TCCCACTGAAGAATCCAATG+TGG | + | chr1.3:59771451-59771470 | MS.gene21020:CDS | 45.0% | |
| TCCCATCCAGAAGAGATGAT+GGG | - | chr1.3:59771065-59771084 | None:intergenic | 45.0% | |
| TGTGATGCTAAGAGCAACGA+TGG | - | chr1.3:59769757-59769776 | None:intergenic | 45.0% | |
| TTAGGATCTACCGAGAACTG+TGG | - | chr1.3:59769985-59770004 | None:intergenic | 45.0% | |
| TTGACGAGAAGCCAATTTCG+CGG | - | chr1.3:59771024-59771043 | None:intergenic | 45.0% | |
| TTGTTGACGCTGTTAGTCAG+GGG | + | chr1.3:59770949-59770968 | MS.gene21020:CDS | 45.0% | |
| TTTGTGCTTGTGATCTGGAG+TGG | + | chr1.3:59769949-59769968 | MS.gene21020:intron | 45.0% | |
| ! | ATTCGATTTGTGATCAGGGG+AGG | + | chr1.3:59769813-59769832 | MS.gene21020:intron | 45.0% |
| ! | GATGGCGAAGTTCCTACTTT+TGG | + | chr1.3:59771395-59771414 | MS.gene21020:CDS | 45.0% |
| ! | GCATGTTTTGCTGCATCTGT+TGG | - | chr1.3:59770981-59771000 | None:intergenic | 45.0% |
| ! | TGTTTTGCTGCATCTGTTGG+GGG | - | chr1.3:59770978-59770997 | None:intergenic | 45.0% |
| !! | GGCACTTTGTTTGGTGCATA+TGG | + | chr1.3:59771143-59771162 | MS.gene21020:CDS | 45.0% |
| !!! | AACTGTTTTGACATGGGCTC+TGG | + | chr1.3:59770825-59770844 | MS.gene21020:CDS | 45.0% |
| AGGGAGCTTATTGGAGAGGA+GGG | + | chr1.3:59770771-59770790 | MS.gene21020:CDS | 50.0% | |
| ATAGGCCCCATCATCTCTTC+TGG | + | chr1.3:59771056-59771075 | MS.gene21020:CDS | 50.0% | |
| ATGCAGGGAGCTTATTGGAG+AGG | + | chr1.3:59770767-59770786 | MS.gene21020:CDS | 50.0% | |
| CAATCAGTGCCGTCAAACAG+CGG | - | chr1.3:59770236-59770255 | None:intergenic | 50.0% | |
| CCCATCCAGAAGAGATGATG+GGG | - | chr1.3:59771064-59771083 | None:intergenic | 50.0% | |
| CCCCATCATCTCTTCTGGAT+GGG | + | chr1.3:59771061-59771080 | MS.gene21020:CDS | 50.0% | |
| CCTGACTAACAGCGTCAACA+AGG | - | chr1.3:59770950-59770969 | None:intergenic | 50.0% | |
| CCTTGTTGACGCTGTTAGTC+AGG | + | chr1.3:59770947-59770966 | MS.gene21020:CDS | 50.0% | |
| GATGCTAAGAGCAACGATGG+CGG | - | chr1.3:59769754-59769773 | None:intergenic | 50.0% | |
| GTCCCATCCAGAAGAGATGA+TGG | - | chr1.3:59771066-59771085 | None:intergenic | 50.0% | |
| TGGAAGTCACATGGGCAGTT+GGG | + | chr1.3:59771214-59771233 | MS.gene21020:CDS | 50.0% | |
| TTGGAAGTCACATGGGCAGT+TGG | + | chr1.3:59771213-59771232 | MS.gene21020:CDS | 50.0% | |
| TTGGCATGTGCTGTCAAGGA+AGG | + | chr1.3:59770852-59770871 | MS.gene21020:CDS | 50.0% | |
| ! | ACAAAGTGCCAGTACCCCTA+AGG | - | chr1.3:59771133-59771152 | None:intergenic | 50.0% |
| !! | AGGGGTACTGGCACTTTGTT+TGG | + | chr1.3:59771134-59771153 | MS.gene21020:CDS | 50.0% |
| !! | AGTTGGGTTGGTGGCAGAAT+AGG | + | chr1.3:59771230-59771249 | MS.gene21020:CDS | 50.0% |
| !! | CGTCAAGCCAAGCGGATTAT+AGG | + | chr1.3:59771038-59771057 | MS.gene21020:CDS | 50.0% |
| !! | TGACATGGGCTCTGGAACTT+TGG | + | chr1.3:59770833-59770852 | MS.gene21020:CDS | 50.0% |
| !! | TGTTTGGTGCATATGGGGGA+GGG | + | chr1.3:59771150-59771169 | MS.gene21020:CDS | 50.0% |
| !! | TTGTTTGGTGCATATGGGGG+AGG | + | chr1.3:59771149-59771168 | MS.gene21020:CDS | 50.0% |
| AGTCACATGGGCAGTTGGGT+TGG | + | chr1.3:59771218-59771237 | MS.gene21020:CDS | 55.0% | |
| ATATGGGGGAGGGTTCTTCG+GGG | + | chr1.3:59771160-59771179 | MS.gene21020:CDS | 55.0% | |
| CAGGGAGCTTATTGGAGAGG+AGG | + | chr1.3:59770770-59770789 | MS.gene21020:CDS | 55.0% | |
| CATATGGGGGAGGGTTCTTC+GGG | + | chr1.3:59771159-59771178 | MS.gene21020:CDS | 55.0% | |
| CTGCCATAGCCGCTGTTTGA+CGG | + | chr1.3:59770224-59770243 | MS.gene21020:intron | 55.0% | |
| GATGGGGCCTATAATCCGCT+TGG | - | chr1.3:59771048-59771067 | None:intergenic | 55.0% | |
| GCATATGGGGGAGGGTTCTT+CGG | + | chr1.3:59771158-59771177 | MS.gene21020:CDS | 55.0% | |
| GCCCCATCATCTCTTCTGGA+TGG | + | chr1.3:59771060-59771079 | MS.gene21020:CDS | 55.0% | |
| GGGAGCTTATTGGAGAGGAG+GGG | + | chr1.3:59770772-59770791 | MS.gene21020:CDS | 55.0% | |
| TGGCTTCTCGTCAAGCCAAG+CGG | + | chr1.3:59771030-59771049 | MS.gene21020:CDS | 55.0% | |
| TTCTTCGGGGAGCAAAGCCT+TGG | + | chr1.3:59771173-59771192 | MS.gene21020:CDS | 55.0% | |
| ! | GAAGGGTTCCTTAGGGGTAC+TGG | + | chr1.3:59771122-59771141 | MS.gene21020:CDS | 55.0% |
| GTGCCGTCAAACAGCGGCTA+TGG | - | chr1.3:59770230-59770249 | None:intergenic | 60.0% | |
| !! | CACATGGGCAGTTGGGTTGG+TGG | + | chr1.3:59771221-59771240 | MS.gene21020:CDS | 60.0% |
| GAGGAGGGGTCATCCCAGAG+TGG | + | chr1.3:59770786-59770805 | MS.gene21020:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 59769708 | 59771520 | 59769708 | ID=MS.gene21020 |
| chr1.3 | mRNA | 59769708 | 59771520 | 59769708 | ID=MS.gene21020.t1;Parent=MS.gene21020 |
| chr1.3 | exon | 59769708 | 59769777 | 59769708 | ID=MS.gene21020.t1.exon1;Parent=MS.gene21020.t1 |
| chr1.3 | CDS | 59769708 | 59769777 | 59769708 | ID=cds.MS.gene21020.t1;Parent=MS.gene21020.t1 |
| chr1.3 | exon | 59770760 | 59771520 | 59770760 | ID=MS.gene21020.t1.exon2;Parent=MS.gene21020.t1 |
| chr1.3 | CDS | 59770760 | 59771520 | 59770760 | ID=cds.MS.gene21020.t1;Parent=MS.gene21020.t1 |
| Gene Sequence |
| Protein sequence |
