Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056007.t1 | XP_003591219.1 | 90.2 | 276 | 20 | 1 | 1 | 276 | 3 | 271 | 1.40E-117 | 432.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056007.t1 | G7I9H9 | 90.2 | 276 | 20 | 1 | 1 | 276 | 3 | 271 | 1.0e-117 | 432.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056007 | MS.gene21020 | 0.863752 | 1.99E-64 | -1.69E-46 |
| MS.gene056007 | MS.gene40789 | 0.92711 | 1.85E-91 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056007.t1 | MTR_1g084040 | 95.652 | 276 | 5 | 1 | 1 | 276 | 3 | 271 | 0.0 | 532 |
| MS.gene056007.t1 | MTR_7g112110 | 74.020 | 204 | 53 | 0 | 1 | 204 | 5 | 208 | 2.99e-113 | 325 |
| MS.gene056007.t1 | MTR_7g112120 | 70.388 | 206 | 57 | 2 | 1 | 202 | 1 | 206 | 4.85e-104 | 302 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056007.t1 | AT1G56423 | 56.716 | 268 | 99 | 4 | 1 | 268 | 1 | 251 | 5.58e-107 | 310 |
| MS.gene056007.t1 | AT1G56423 | 56.115 | 278 | 103 | 5 | 1 | 268 | 1 | 269 | 5.83e-107 | 311 |
Find 70 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATTTATGATGTGATTAA+TGG | 0.186748 | 1.3:+59721645 | MS.gene056007:CDS |
| GGCACTTTGTTTGGTGCATA+TGG | 0.213119 | 1.3:+59721531 | MS.gene056007:CDS |
| ATAACCGAGCCTTTCTGTTT+TGG | 0.259791 | 1.3:-59720102 | None:intergenic |
| CGTCAAGCCAAGCGGATTAT+AGG | 0.285681 | 1.3:+59721426 | MS.gene056007:CDS |
| AGGGGTACTGGCACTTTGTT+TGG | 0.287164 | 1.3:+59721522 | MS.gene056007:CDS |
| TGACATGGGCTCTGGAACTT+TGG | 0.287746 | 1.3:+59721221 | MS.gene056007:CDS |
| TCACCATCAAAAGAAGTATA+TGG | 0.340203 | 1.3:-59721747 | None:intergenic |
| CCTTGTTGACGCTGTTAGTC+AGG | 0.341491 | 1.3:+59721335 | MS.gene056007:CDS |
| ATAGGCCCCATCATCTCTTC+TGG | 0.347557 | 1.3:+59721444 | MS.gene056007:CDS |
| GCACTTTGTTTGGTGCATAT+GGG | 0.347749 | 1.3:+59721532 | MS.gene056007:CDS |
| CAATCACAGAAGGGTTCCTT+AGG | 0.357038 | 1.3:+59721502 | MS.gene056007:CDS |
| ATCCAATGTGGATGAATCTA+TGG | 0.357729 | 1.3:+59721851 | MS.gene056007:CDS |
| GATGGCGAAGTTCCTACTTT+TGG | 0.378746 | 1.3:+59721783 | MS.gene056007:CDS |
| TGCGCAGAAAGAAAGTAAAA+AGG | 0.400376 | 1.3:+59721386 | MS.gene056007:CDS |
| AGTTGGGTTGGTGGCAGAAT+AGG | 0.401598 | 1.3:+59721618 | MS.gene056007:CDS |
| TAATGGAGTGCATTTGTTGC+TGG | 0.410499 | 1.3:+59721662 | MS.gene056007:CDS |
| GAGCAAAGCCTTGGTAGAAT+TGG | 0.427351 | 1.3:+59721570 | MS.gene056007:CDS |
| GGTAGAATTGGCTATCTTGT+TGG | 0.428206 | 1.3:+59721582 | MS.gene056007:CDS |
| GGGAGATGATTCATATGAAC+TGG | 0.428386 | 1.3:-59721820 | None:intergenic |
| CACTTTGTTTGGTGCATATG+GGG | 0.431463 | 1.3:+59721533 | MS.gene056007:CDS |
| TTGGAAGTCACATGGGCAGT+TGG | 0.444851 | 1.3:+59721601 | MS.gene056007:CDS |
| AGTCACATGGGCAGTTGGGT+TGG | 0.461400 | 1.3:+59721606 | MS.gene056007:CDS |
| GAAGGGTTCCTTAGGGGTAC+TGG | 0.461508 | 1.3:+59721510 | MS.gene056007:CDS |
| TTGCTGGAATTTGTTCAAAC+AGG | 0.465120 | 1.3:+59721678 | MS.gene056007:CDS |
| CACATGGGCAGTTGGGTTGG+TGG | 0.487418 | 1.3:+59721609 | MS.gene056007:CDS |
| TGGAAGTCACATGGGCAGTT+GGG | 0.489000 | 1.3:+59721602 | MS.gene056007:CDS |
| TAATGTGAACTTTCCACTCT+GGG | 0.493495 | 1.3:-59721187 | None:intergenic |
| CTTGTTGACGCTGTTAGTCA+GGG | 0.493758 | 1.3:+59721336 | MS.gene056007:CDS |
| CCCCATCATCTCTTCTGGAT+GGG | 0.496655 | 1.3:+59721449 | MS.gene056007:CDS |
| TTCTTCGGGGAGCAAAGCCT+TGG | 0.501943 | 1.3:+59721561 | MS.gene056007:CDS |
| TTCGAAGCTATTTATTATGG+TGG | 0.502729 | 1.3:+59721477 | MS.gene056007:CDS |
| TTCCATAGATTCATCCACAT+TGG | 0.502813 | 1.3:-59721853 | None:intergenic |
| TCCACATTGGATTCTTCAGT+GGG | 0.511116 | 1.3:-59721840 | None:intergenic |
| GTCCCATCCAGAAGAGATGA+TGG | 0.512466 | 1.3:-59721451 | None:intergenic |
| ATCGTTGCTCTTAGCATCAC+AGG | 0.518180 | 1.3:+59720142 | MS.gene056007:CDS |
| GCCCCATCATCTCTTCTGGA+TGG | 0.519007 | 1.3:+59721448 | MS.gene056007:CDS |
| AGGGAGCTTATTGGCGAGGA+GGG | 0.520387 | 1.3:+59721159 | MS.gene056007:CDS |
| CATGGATTTCCAAAACAGAA+AGG | 0.523987 | 1.3:+59720093 | None:intergenic |
| ATAATGTGAACTTTCCACTC+TGG | 0.524601 | 1.3:-59721188 | None:intergenic |
| CTTTCAGAGCTGCCAAAAGT+AGG | 0.529923 | 1.3:-59721795 | None:intergenic |
| CTATCTTGTTGGAAGTCACA+TGG | 0.536263 | 1.3:+59721593 | MS.gene056007:CDS |
| AACTTTGGCATGTGCTGTCA+AGG | 0.544459 | 1.3:+59721236 | MS.gene056007:CDS |
| ACTTTGTTTGGTGCATATGG+GGG | 0.548774 | 1.3:+59721534 | MS.gene056007:CDS |
| AATCACAGAAGGGTTCCTTA+GGG | 0.565296 | 1.3:+59721503 | MS.gene056007:CDS |
| TTGACGAGAAGCCAATTTCG+CGG | 0.567474 | 1.3:-59721409 | None:intergenic |
| TATGGTGGTACAATCACAGA+AGG | 0.573148 | 1.3:+59721492 | MS.gene056007:CDS |
| TTGGCATGTGCTGTCAAGGA+AGG | 0.578441 | 1.3:+59721240 | MS.gene056007:CDS |
| GATGGGGCCTATAATCCGCT+TGG | 0.579892 | 1.3:-59721433 | None:intergenic |
| TCCCATCCAGAAGAGATGAT+GGG | 0.583665 | 1.3:-59721450 | None:intergenic |
| ATCCACATTGGATTCTTCAG+TGG | 0.584833 | 1.3:-59721841 | None:intergenic |
| ACAAAGTGCCAGTACCCCTA+AGG | 0.589908 | 1.3:-59721518 | None:intergenic |
| GGAACTTCGCCATCATGAGT+TGG | 0.592542 | 1.3:-59721774 | None:intergenic |
| CCTGACTAACAGCGTCAACA+AGG | 0.594656 | 1.3:-59721335 | None:intergenic |
| ATTTCCAAAACAGAAAGGCT+CGG | 0.616084 | 1.3:+59720098 | MS.gene056007:CDS |
| GGGAGCTTATTGGCGAGGAG+GGG | 0.620894 | 1.3:+59721160 | MS.gene056007:CDS |
| CCCATCCAGAAGAGATGATG+GGG | 0.628978 | 1.3:-59721449 | None:intergenic |
| TTGTTGACGCTGTTAGTCAG+GGG | 0.644595 | 1.3:+59721337 | MS.gene056007:CDS |
| TATCTTGTTGGAAGTCACAT+GGG | 0.645553 | 1.3:+59721594 | MS.gene056007:CDS |
| ATGCAGGGAGCTTATTGGCG+AGG | 0.646429 | 1.3:+59721155 | MS.gene056007:CDS |
| CAGGGAGCTTATTGGCGAGG+AGG | 0.648197 | 1.3:+59721158 | MS.gene056007:CDS |
| GGTGAAGTTCCAACTCATGA+TGG | 0.654282 | 1.3:+59721765 | MS.gene056007:CDS |
| TGTGATGCTAAGAGCAACGA+TGG | 0.668664 | 1.3:-59720140 | None:intergenic |
| TGGCTTCTCGTCAAGCCAAG+CGG | 0.674972 | 1.3:+59721418 | MS.gene056007:CDS |
| ATGGTGGTACAATCACAGAA+GGG | 0.678014 | 1.3:+59721493 | MS.gene056007:CDS |
| CAAGATAGCCAATTCTACCA+AGG | 0.680375 | 1.3:-59721578 | None:intergenic |
| ATCACAGAAGGGTTCCTTAG+GGG | 0.680466 | 1.3:+59721504 | MS.gene056007:CDS |
| CTGACTAACAGCGTCAACAA+GGG | 0.688363 | 1.3:-59721334 | None:intergenic |
| GATGCTAAGAGCAACGATGG+CGG | 0.700912 | 1.3:-59720137 | None:intergenic |
| TCCCACTGAAGAATCCAATG+TGG | 0.713284 | 1.3:+59721839 | MS.gene056007:CDS |
| GAGGAGGGGTCATCCCAGAG+TGG | 0.752894 | 1.3:+59721174 | MS.gene056007:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATAAAAATACAAAAAATA+TGG | - | chr1.3:59720970-59720989 | None:intergenic | 10.0% |
| !! | ATATATCATTATATTTATTC+TGG | + | chr1.3:59720887-59720906 | MS.gene056007:intron | 10.0% |
| !! | AGAAAATGAAGAAATATAAT+TGG | + | chr1.3:59720790-59720809 | MS.gene056007:intron | 15.0% |
| !! | TAGTAAATAAAATGATCAAT+TGG | - | chr1.3:59720230-59720249 | None:intergenic | 15.0% |
| !! | TGAAATAAAATGAAATTGAA+TGG | + | chr1.3:59720831-59720850 | MS.gene056007:intron | 15.0% |
| !!! | ATTATATTTCTTCATTTTCT+CGG | - | chr1.3:59720790-59720809 | None:intergenic | 15.0% |
| !!! | ATTGATGATTTTTCTTATTT+TGG | + | chr1.3:59720267-59720286 | MS.gene056007:intron | 15.0% |
| !!! | TTGATGATTTTTCTTATTTT+GGG | + | chr1.3:59720268-59720287 | MS.gene056007:intron | 15.0% |
| !! | ATGATTTATGATGTGATTAA+TGG | + | chr1.3:59721645-59721664 | MS.gene056007:CDS | 20.0% |
| !! | TTATTGGAATGAAATGAAAA+TGG | + | chr1.3:59720938-59720957 | MS.gene056007:intron | 20.0% |
| !!! | ATTATTAAACTGTTTTGACA+TGG | + | chr1.3:59721206-59721225 | MS.gene056007:CDS | 20.0% |
| !!! | ATTTTCATTTCATTCCAATA+AGG | - | chr1.3:59720939-59720958 | None:intergenic | 20.0% |
| !!! | TTATTAAACTGTTTTGACAT+GGG | + | chr1.3:59721207-59721226 | MS.gene056007:CDS | 20.0% |
| !!! | TTTTCATTTCATTCCAATAA+GGG | - | chr1.3:59720938-59720957 | None:intergenic | 20.0% |
| !!! | TTTTTCGAAGCTATTTATTA+TGG | + | chr1.3:59721474-59721493 | MS.gene056007:CDS | 20.0% |
| ! | AAAATAGTCACATATCATTG+TGG | - | chr1.3:59720730-59720749 | None:intergenic | 25.0% |
| ! | ATAAGCTTAATTAGTGTAAG+AGG | - | chr1.3:59720302-59720321 | None:intergenic | 25.0% |
| ! | TAATTGGACATGTATAGAAT+TGG | + | chr1.3:59720806-59720825 | MS.gene056007:intron | 25.0% |
| ATAGCAGCATTACATTGTTA+TGG | - | chr1.3:59720597-59720616 | None:intergenic | 30.0% | |
| ATTACATTGTTATGGCATAG+CGG | - | chr1.3:59720589-59720608 | None:intergenic | 30.0% | |
| GATTGAATCTACAATTCTGT+TGG | + | chr1.3:59720637-59720656 | MS.gene056007:intron | 30.0% | |
| TCAATGTTGAATTCACTGTT+TGG | + | chr1.3:59720521-59720540 | MS.gene056007:intron | 30.0% | |
| TTCGAAGCTATTTATTATGG+TGG | + | chr1.3:59721477-59721496 | MS.gene056007:CDS | 30.0% | |
| ! | TCACCATCAAAAGAAGTATA+TGG | - | chr1.3:59721750-59721769 | None:intergenic | 30.0% |
| ACAAAATACTCCACAGTTCT+CGG | + | chr1.3:59720358-59720377 | MS.gene056007:intron | 35.0% | |
| ATAATGTGAACTTTCCACTC+TGG | - | chr1.3:59721191-59721210 | None:intergenic | 35.0% | |
| ATCCAATGTGGATGAATCTA+TGG | + | chr1.3:59721851-59721870 | MS.gene056007:CDS | 35.0% | |
| ATTCCAATAAGGGAGGAATA+TGG | - | chr1.3:59720928-59720947 | None:intergenic | 35.0% | |
| ATTTCCAAAACAGAAAGGCT+CGG | + | chr1.3:59720098-59720117 | MS.gene056007:CDS | 35.0% | |
| CTACTCATGTTGAAAAAGCA+AGG | + | chr1.3:59721292-59721311 | MS.gene056007:CDS | 35.0% | |
| GGCTACATATAGCAATGTTT+AGG | - | chr1.3:59720389-59720408 | None:intergenic | 35.0% | |
| TAATGTGAACTTTCCACTCT+GGG | - | chr1.3:59721190-59721209 | None:intergenic | 35.0% | |
| TATCTTGTTGGAAGTCACAT+GGG | + | chr1.3:59721594-59721613 | MS.gene056007:CDS | 35.0% | |
| TCATATTTGTGCTTGTGATC+TGG | + | chr1.3:59720330-59720349 | MS.gene056007:intron | 35.0% | |
| TCATTTCATTCCAATAAGGG+AGG | - | chr1.3:59720935-59720954 | None:intergenic | 35.0% | |
| TGCGCAGAAAGAAAGTAAAA+AGG | + | chr1.3:59721386-59721405 | MS.gene056007:CDS | 35.0% | |
| TTCCAATAAGGGAGGAATAT+GGG | - | chr1.3:59720927-59720946 | None:intergenic | 35.0% | |
| TTCCATAGATTCATCCACAT+TGG | - | chr1.3:59721856-59721875 | None:intergenic | 35.0% | |
| ! | CAGTTTGCTTCAGAACAATA+AGG | + | chr1.3:59720551-59720570 | MS.gene056007:intron | 35.0% |
| ! | GCTCCATATACTTCTTTTGA+TGG | + | chr1.3:59721744-59721763 | MS.gene056007:CDS | 35.0% |
| ! | TGACATTCGATTTGTGATCA+GGG | + | chr1.3:59720195-59720214 | MS.gene056007:intron | 35.0% |
| ! | TTGACATTCGATTTGTGATC+AGG | + | chr1.3:59720194-59720213 | MS.gene056007:intron | 35.0% |
| ! | TTGCTGGAATTTGTTCAAAC+AGG | + | chr1.3:59721678-59721697 | MS.gene056007:CDS | 35.0% |
| AACAACACGTGATCTCACTT+AGG | - | chr1.3:59720410-59720429 | None:intergenic | 40.0% | |
| AAGTAAAAAGGCCGCGAAAT+TGG | + | chr1.3:59721398-59721417 | MS.gene056007:CDS | 40.0% | |
| AATCACAGAAGGGTTCCTTA+GGG | + | chr1.3:59721503-59721522 | MS.gene056007:CDS | 40.0% | |
| ATCCACATTGGATTCTTCAG+TGG | - | chr1.3:59721844-59721863 | None:intergenic | 40.0% | |
| ATCCCATATTCCTCCCTTAT+TGG | + | chr1.3:59720922-59720941 | MS.gene056007:intron | 40.0% | |
| ATGGTGGTACAATCACAGAA+GGG | + | chr1.3:59721493-59721512 | MS.gene056007:CDS | 40.0% | |
| CAAGATAGCCAATTCTACCA+AGG | - | chr1.3:59721581-59721600 | None:intergenic | 40.0% | |
| CTATCTTGTTGGAAGTCACA+TGG | + | chr1.3:59721593-59721612 | MS.gene056007:CDS | 40.0% | |
| GAAAAATGCAGGGAGCTTAT+TGG | + | chr1.3:59721150-59721169 | MS.gene056007:CDS | 40.0% | |
| GCTTTCAGCTGAAAAATGCA+GGG | + | chr1.3:59721140-59721159 | MS.gene056007:intron | 40.0% | |
| GGGAGATGATTCATATGAAC+TGG | - | chr1.3:59721823-59721842 | None:intergenic | 40.0% | |
| GGTAGAATTGGCTATCTTGT+TGG | + | chr1.3:59721582-59721601 | MS.gene056007:CDS | 40.0% | |
| TATGGTGGTACAATCACAGA+AGG | + | chr1.3:59721492-59721511 | MS.gene056007:CDS | 40.0% | |
| TCCACATTGGATTCTTCAGT+GGG | - | chr1.3:59721843-59721862 | None:intergenic | 40.0% | |
| TGCTTTCAGCTGAAAAATGC+AGG | + | chr1.3:59721139-59721158 | MS.gene056007:intron | 40.0% | |
| ! | ATAACCGAGCCTTTCTGTTT+TGG | - | chr1.3:59720105-59720124 | None:intergenic | 40.0% |
| ! | ATGTTTTGCTGCATCTGTTG+GGG | - | chr1.3:59721367-59721386 | None:intergenic | 40.0% |
| ! | CATACAGTCTTTTGTTGCTG+AGG | - | chr1.3:59721008-59721027 | None:intergenic | 40.0% |
| ! | CATGTTTTGCTGCATCTGTT+GGG | - | chr1.3:59721368-59721387 | None:intergenic | 40.0% |
| ! | CGGAGTGAACAAGTTTTCAA+GGG | - | chr1.3:59720770-59720789 | None:intergenic | 40.0% |
| ! | GACATTCGATTTGTGATCAG+GGG | + | chr1.3:59720196-59720215 | MS.gene056007:intron | 40.0% |
| ! | TAATGGAGTGCATTTGTTGC+TGG | + | chr1.3:59721662-59721681 | MS.gene056007:CDS | 40.0% |
| ! | TCGGAGTGAACAAGTTTTCA+AGG | - | chr1.3:59720771-59720790 | None:intergenic | 40.0% |
| !! | ACTTTGTTTGGTGCATATGG+GGG | + | chr1.3:59721534-59721553 | MS.gene056007:CDS | 40.0% |
| !! | CACTTTGTTTGGTGCATATG+GGG | + | chr1.3:59721533-59721552 | MS.gene056007:CDS | 40.0% |
| !! | GCACTTTGTTTGGTGCATAT+GGG | + | chr1.3:59721532-59721551 | MS.gene056007:CDS | 40.0% |
| AACTTTGGCATGTGCTGTCA+AGG | + | chr1.3:59721236-59721255 | MS.gene056007:CDS | 45.0% | |
| AGACCATCAACTACACTGTC+TGG | + | chr1.3:59721087-59721106 | MS.gene056007:intron | 45.0% | |
| ATCACAGAAGGGTTCCTTAG+GGG | + | chr1.3:59721504-59721523 | MS.gene056007:CDS | 45.0% | |
| ATCGTTGCTCTTAGCATCAC+AGG | + | chr1.3:59720142-59720161 | MS.gene056007:CDS | 45.0% | |
| CAATCACAGAAGGGTTCCTT+AGG | + | chr1.3:59721502-59721521 | MS.gene056007:CDS | 45.0% | |
| CTACCAGACAGTGTAGTTGA+TGG | - | chr1.3:59721093-59721112 | None:intergenic | 45.0% | |
| CTGACTAACAGCGTCAACAA+GGG | - | chr1.3:59721337-59721356 | None:intergenic | 45.0% | |
| CTGCTATAGCCACTGTTTGA+CGG | + | chr1.3:59720610-59720629 | MS.gene056007:intron | 45.0% | |
| CTTGTTGACGCTGTTAGTCA+GGG | + | chr1.3:59721336-59721355 | MS.gene056007:CDS | 45.0% | |
| CTTTCAGAGCTGCCAAAAGT+AGG | - | chr1.3:59721798-59721817 | None:intergenic | 45.0% | |
| GAGCAAAGCCTTGGTAGAAT+TGG | + | chr1.3:59721570-59721589 | MS.gene056007:CDS | 45.0% | |
| GGTGAAGTTCCAACTCATGA+TGG | + | chr1.3:59721765-59721784 | MS.gene056007:CDS | 45.0% | |
| TCCCACTGAAGAATCCAATG+TGG | + | chr1.3:59721839-59721858 | MS.gene056007:CDS | 45.0% | |
| TCCCATCCAGAAGAGATGAT+GGG | - | chr1.3:59721453-59721472 | None:intergenic | 45.0% | |
| TGTGATGCTAAGAGCAACGA+TGG | - | chr1.3:59720143-59720162 | None:intergenic | 45.0% | |
| TTAGGATCTACCGAGAACTG+TGG | - | chr1.3:59720371-59720390 | None:intergenic | 45.0% | |
| TTGACGAGAAGCCAATTTCG+CGG | - | chr1.3:59721412-59721431 | None:intergenic | 45.0% | |
| TTGTTGACGCTGTTAGTCAG+GGG | + | chr1.3:59721337-59721356 | MS.gene056007:CDS | 45.0% | |
| TTTGTGCTTGTGATCTGGAG+TGG | + | chr1.3:59720335-59720354 | MS.gene056007:intron | 45.0% | |
| ! | ATTCGATTTGTGATCAGGGG+AGG | + | chr1.3:59720199-59720218 | MS.gene056007:intron | 45.0% |
| ! | GATGGCGAAGTTCCTACTTT+TGG | + | chr1.3:59721783-59721802 | MS.gene056007:CDS | 45.0% |
| ! | GCATGTTTTGCTGCATCTGT+TGG | - | chr1.3:59721369-59721388 | None:intergenic | 45.0% |
| ! | TGTTTTGCTGCATCTGTTGG+GGG | - | chr1.3:59721366-59721385 | None:intergenic | 45.0% |
| !! | GGCACTTTGTTTGGTGCATA+TGG | + | chr1.3:59721531-59721550 | MS.gene056007:CDS | 45.0% |
| !!! | AACTGTTTTGACATGGGCTC+TGG | + | chr1.3:59721213-59721232 | MS.gene056007:CDS | 45.0% |
| ATAGGCCCCATCATCTCTTC+TGG | + | chr1.3:59721444-59721463 | MS.gene056007:CDS | 50.0% | |
| CAATCAGTGCCGTCAAACAG+TGG | - | chr1.3:59720622-59720641 | None:intergenic | 50.0% | |
| CCCATCCAGAAGAGATGATG+GGG | - | chr1.3:59721452-59721471 | None:intergenic | 50.0% | |
| CCCCATCATCTCTTCTGGAT+GGG | + | chr1.3:59721449-59721468 | MS.gene056007:CDS | 50.0% | |
| CCTGACTAACAGCGTCAACA+AGG | - | chr1.3:59721338-59721357 | None:intergenic | 50.0% | |
| CCTTGTTGACGCTGTTAGTC+AGG | + | chr1.3:59721335-59721354 | MS.gene056007:CDS | 50.0% | |
| GATGCTAAGAGCAACGATGG+CGG | - | chr1.3:59720140-59720159 | None:intergenic | 50.0% | |
| GGAACTTCGCCATCATGAGT+TGG | - | chr1.3:59721777-59721796 | None:intergenic | 50.0% | |
| GTCCCATCCAGAAGAGATGA+TGG | - | chr1.3:59721454-59721473 | None:intergenic | 50.0% | |
| TGGAAGTCACATGGGCAGTT+GGG | + | chr1.3:59721602-59721621 | MS.gene056007:CDS | 50.0% | |
| TTGGAAGTCACATGGGCAGT+TGG | + | chr1.3:59721601-59721620 | MS.gene056007:CDS | 50.0% | |
| TTGGCATGTGCTGTCAAGGA+AGG | + | chr1.3:59721240-59721259 | MS.gene056007:CDS | 50.0% | |
| ! | ACAAAGTGCCAGTACCCCTA+AGG | - | chr1.3:59721521-59721540 | None:intergenic | 50.0% |
| !! | AGGGGTACTGGCACTTTGTT+TGG | + | chr1.3:59721522-59721541 | MS.gene056007:CDS | 50.0% |
| !! | AGTTGGGTTGGTGGCAGAAT+AGG | + | chr1.3:59721618-59721637 | MS.gene056007:CDS | 50.0% |
| !! | CGTCAAGCCAAGCGGATTAT+AGG | + | chr1.3:59721426-59721445 | MS.gene056007:CDS | 50.0% |
| !! | TGACATGGGCTCTGGAACTT+TGG | + | chr1.3:59721221-59721240 | MS.gene056007:CDS | 50.0% |
| !! | TGTTTGGTGCATATGGGGGA+GGG | + | chr1.3:59721538-59721557 | MS.gene056007:CDS | 50.0% |
| !! | TTGTTTGGTGCATATGGGGG+AGG | + | chr1.3:59721537-59721556 | MS.gene056007:CDS | 50.0% |
| AGGGAGCTTATTGGCGAGGA+GGG | + | chr1.3:59721159-59721178 | MS.gene056007:CDS | 55.0% | |
| AGTCACATGGGCAGTTGGGT+TGG | + | chr1.3:59721606-59721625 | MS.gene056007:CDS | 55.0% | |
| ATATGGGGGAGGGTTCTTCG+GGG | + | chr1.3:59721548-59721567 | MS.gene056007:CDS | 55.0% | |
| ATGCAGGGAGCTTATTGGCG+AGG | + | chr1.3:59721155-59721174 | MS.gene056007:CDS | 55.0% | |
| CATATGGGGGAGGGTTCTTC+GGG | + | chr1.3:59721547-59721566 | MS.gene056007:CDS | 55.0% | |
| GATGGGGCCTATAATCCGCT+TGG | - | chr1.3:59721436-59721455 | None:intergenic | 55.0% | |
| GCATATGGGGGAGGGTTCTT+CGG | + | chr1.3:59721546-59721565 | MS.gene056007:CDS | 55.0% | |
| GCCCCATCATCTCTTCTGGA+TGG | + | chr1.3:59721448-59721467 | MS.gene056007:CDS | 55.0% | |
| TGGCTTCTCGTCAAGCCAAG+CGG | + | chr1.3:59721418-59721437 | MS.gene056007:CDS | 55.0% | |
| TTCTTCGGGGAGCAAAGCCT+TGG | + | chr1.3:59721561-59721580 | MS.gene056007:CDS | 55.0% | |
| ! | GAAGGGTTCCTTAGGGGTAC+TGG | + | chr1.3:59721510-59721529 | MS.gene056007:CDS | 55.0% |
| CAGGGAGCTTATTGGCGAGG+AGG | + | chr1.3:59721158-59721177 | MS.gene056007:CDS | 60.0% | |
| GGGAGCTTATTGGCGAGGAG+GGG | + | chr1.3:59721160-59721179 | MS.gene056007:CDS | 60.0% | |
| !! | CACATGGGCAGTTGGGTTGG+TGG | + | chr1.3:59721609-59721628 | MS.gene056007:CDS | 60.0% |
| GAGGAGGGGTCATCCCAGAG+TGG | + | chr1.3:59721174-59721193 | MS.gene056007:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 59720094 | 59721908 | 59720094 | ID=MS.gene056007 |
| chr1.3 | mRNA | 59720094 | 59721908 | 59720094 | ID=MS.gene056007.t1;Parent=MS.gene056007 |
| chr1.3 | exon | 59720094 | 59720163 | 59720094 | ID=MS.gene056007.t1.exon1;Parent=MS.gene056007.t1 |
| chr1.3 | CDS | 59720094 | 59720163 | 59720094 | ID=cds.MS.gene056007.t1;Parent=MS.gene056007.t1 |
| chr1.3 | exon | 59721148 | 59721908 | 59721148 | ID=MS.gene056007.t1.exon2;Parent=MS.gene056007.t1 |
| chr1.3 | CDS | 59721148 | 59721908 | 59721148 | ID=cds.MS.gene056007.t1;Parent=MS.gene056007.t1 |
| Gene Sequence |
| Protein sequence |
