Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21044.t1 | XP_003591227.1 | 99.5 | 183 | 1 | 0 | 1 | 183 | 1 | 183 | 5.50E-94 | 353.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21044.t1 | Q8LEK2 | 83.3 | 186 | 28 | 1 | 1 | 183 | 1 | 186 | 3.2e-82 | 305.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21044.t1 | G7I9I7 | 99.5 | 183 | 1 | 0 | 1 | 183 | 1 | 183 | 4.0e-94 | 353.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049140 | MS.gene21044 | 0.804544 | 2.05E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene21044 | 0.808884 | 2.49E-50 | -1.69E-46 |
| MS.gene052296 | MS.gene21044 | 0.814686 | 1.36E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21044.t1 | MTR_1g084620 | 99.454 | 183 | 1 | 0 | 1 | 183 | 1 | 183 | 5.31e-132 | 367 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21044.t1 | AT1G09330 | 83.333 | 186 | 28 | 1 | 1 | 183 | 1 | 186 | 6.33e-113 | 319 |
| MS.gene21044.t1 | AT1G09330 | 86.957 | 115 | 12 | 1 | 1 | 112 | 1 | 115 | 1.58e-69 | 207 |
Find 32 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGTAAAACCAACGATAT+TGG | 0.281162 | 1.4:-68755505 | None:intergenic |
| AACGTTGAATTTACCTGGTT+GGG | 0.320527 | 1.4:-68754082 | None:intergenic |
| GCTGATTATCTCCTTGTTGT+AGG | 0.355434 | 1.4:+68755459 | MS.gene21044:CDS |
| ATGATCTTGGTGAGAGTGTT+TGG | 0.360765 | 1.4:+68754531 | MS.gene21044:CDS |
| ATTCTCCCTCATAAGGCTTC+AGG | 0.382513 | 1.4:+68755437 | MS.gene21044:CDS |
| ATCTCTTACCGCAAGGTAAA+GGG | 0.390770 | 1.4:-68755056 | None:intergenic |
| AATCTCTTACCGCAAGGTAA+AGG | 0.423195 | 1.4:-68755057 | None:intergenic |
| AATCAGCCTGAAGCCTTATG+AGG | 0.430875 | 1.4:-68755443 | None:intergenic |
| TGGCAATATTCTCCCTCATA+AGG | 0.431645 | 1.4:+68755430 | MS.gene21044:CDS |
| AACACTAAATGCTGACTGTA+AGG | 0.448188 | 1.4:-68756526 | None:intergenic |
| TTTCACTGCAGTCATTGGCT+AGG | 0.477229 | 1.4:+68754999 | MS.gene21044:intron |
| AAACGTTGAATTTACCTGGT+TGG | 0.477789 | 1.4:-68754083 | None:intergenic |
| CTCAGCATTGCCAATATCGT+TGG | 0.478560 | 1.4:+68755495 | MS.gene21044:CDS |
| CCTCTCAGACAATTGCCTCT+CGG | 0.479391 | 1.4:+68756493 | MS.gene21044:CDS |
| GGATGAACAAGAAAGATTCA+TGG | 0.490476 | 1.4:+68755020 | MS.gene21044:CDS |
| TGGAATGAAATTGATGATCT+TGG | 0.506140 | 1.4:+68754518 | MS.gene21044:CDS |
| TATTTGATAGGCTGCGGCGT+TGG | 0.512423 | 1.4:+68754364 | MS.gene21044:intron |
| AAAGAAACAAGTCCTTGGAT+TGG | 0.535242 | 1.4:-68754229 | None:intergenic |
| ACGTGAAAGAAACAAGTCCT+TGG | 0.537123 | 1.4:-68754234 | None:intergenic |
| GAACACTTACATCTTGATCA+AGG | 0.543889 | 1.4:-68754565 | None:intergenic |
| GGCAGTACTGTGGATTATGT+TGG | 0.568424 | 1.4:+68755410 | MS.gene21044:intron |
| CTCACGCATGGATCCCAACC+AGG | 0.569182 | 1.4:+68754069 | None:intergenic |
| AACGATATTGGCAATGCTGA+GGG | 0.574974 | 1.4:-68755493 | None:intergenic |
| TGGGTGGTTAAGAATGTCAG+TGG | 0.584529 | 1.4:+68754470 | MS.gene21044:CDS |
| CAACGATATTGGCAATGCTG+AGG | 0.602070 | 1.4:-68755494 | None:intergenic |
| ATCAGCCTGAAGCCTTATGA+GGG | 0.607448 | 1.4:-68755442 | None:intergenic |
| CCGAGAGGCAATTGTCTGAG+AGG | 0.623720 | 1.4:-68756493 | None:intergenic |
| TTGAAAACTACTCCAATCCA+AGG | 0.632706 | 1.4:+68754217 | MS.gene21044:CDS |
| CTGGTGGACCCTTTACCTTG+CGG | 0.632785 | 1.4:+68755048 | MS.gene21044:CDS |
| TGCTTCTACAGGCAGTACTG+TGG | 0.650126 | 1.4:+68755400 | MS.gene21044:intron |
| TCAAACAAACTCCTACAACA+AGG | 0.714274 | 1.4:-68755470 | None:intergenic |
| TAAGGTAGATGAAAACCGAG+AGG | 0.750436 | 1.4:-68756508 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAATTTAACAAATTGC+TGG | + | chr1.4:68756432-68756451 | MS.gene21044:intron | 15.0% |
| !! | AAAAAACATACATAAGATTC+AGG | - | chr1.4:68754966-68754985 | None:intergenic | 20.0% |
| !! | AGAAAATTTATCACTTTAGT+TGG | - | chr1.4:68755232-68755251 | None:intergenic | 20.0% |
| !! | ATTGAAAGATGTTATTGTTA+CGG | + | chr1.4:68756102-68756121 | MS.gene21044:intron | 20.0% |
| !! | TACAATCATAAATTTCCATT+TGG | - | chr1.4:68755840-68755859 | None:intergenic | 20.0% |
| !! | TCAAAATGAAAAAAAGAAAC+AGG | - | chr1.4:68755724-68755743 | None:intergenic | 20.0% |
| !! | TGAAAATTCTAACTATAGTT+TGG | + | chr1.4:68755749-68755768 | MS.gene21044:intron | 20.0% |
| !!! | GTAATATGTTTTTCGAAATA+GGG | + | chr1.4:68754613-68754632 | MS.gene21044:intron | 20.0% |
| !!! | TAACTTTGTTATCATTTTTG+TGG | + | chr1.4:68754418-68754437 | MS.gene21044:CDS | 20.0% |
| !!! | TGTAATATGTTTTTCGAAAT+AGG | + | chr1.4:68754612-68754631 | MS.gene21044:intron | 20.0% |
| !!! | TTTGTTTTGATTAAGTTTCA+GGG | + | chr1.4:68754588-68754607 | MS.gene21044:intron | 20.0% |
| ! | AATAACATCTTTCAATTTCC+TGG | - | chr1.4:68756098-68756117 | None:intergenic | 25.0% |
| ! | AATTTATAGTACCCTGTTAA+TGG | + | chr1.4:68756175-68756194 | MS.gene21044:intron | 25.0% |
| ! | ATAACATCTTTCAATTTCCT+GGG | - | chr1.4:68756097-68756116 | None:intergenic | 25.0% |
| ! | ATTAAGTAGTATATCCAAAC+AGG | - | chr1.4:68754639-68754658 | None:intergenic | 25.0% |
| ! | ATTTATAGTACCCTGTTAAT+GGG | + | chr1.4:68756176-68756195 | MS.gene21044:intron | 25.0% |
| ! | ATTTGTAATTTCCTAAGGAT+GGG | + | chr1.4:68755899-68755918 | MS.gene21044:intron | 25.0% |
| ! | TACTAAATTCATGTACCAAA+TGG | + | chr1.4:68755822-68755841 | MS.gene21044:intron | 25.0% |
| ! | TGATCAAATTAGTCATGTTA+AGG | - | chr1.4:68755876-68755895 | None:intergenic | 25.0% |
| !! | AATAGCTCTGTTAATTATCA+CGG | + | chr1.4:68755274-68755293 | MS.gene21044:intron | 25.0% |
| !! | CTTCTTTTATATTGCAGAAT+TGG | + | chr1.4:68755576-68755595 | MS.gene21044:intron | 25.0% |
| !! | TTATATTGCAGAATTGGTTT+AGG | + | chr1.4:68755582-68755601 | MS.gene21044:intron | 25.0% |
| !! | TTCACATCACATTTTCAAAT+TGG | + | chr1.4:68756299-68756318 | MS.gene21044:intron | 25.0% |
| !! | TTTTCTTTATGCTTTGTATC+TGG | + | chr1.4:68755246-68755265 | MS.gene21044:intron | 25.0% |
| !!! | CTTTGTTTTGATTAAGTTTC+AGG | + | chr1.4:68754587-68754606 | MS.gene21044:intron | 25.0% |
| !!! | TTGTTTTGATTAAGTTTCAG+GGG | + | chr1.4:68754589-68754608 | MS.gene21044:intron | 25.0% |
| !!! | TTTTATTTGTATGCTTCTAC+AGG | + | chr1.4:68755389-68755408 | MS.gene21044:intron | 25.0% |
| AAACAATAAACCAATGTGAG+GGG | - | chr1.4:68756380-68756399 | None:intergenic | 30.0% | |
| AAGAAAACGTTGAATTTACC+TGG | - | chr1.4:68754090-68754109 | None:intergenic | 30.0% | |
| AGTTAGCTGAAAACAATCAA+TGG | + | chr1.4:68754777-68754796 | MS.gene21044:intron | 30.0% | |
| ATTGAAACCAGATCTAAGAA+TGG | - | chr1.4:68754116-68754135 | None:intergenic | 30.0% | |
| GAAACAATAAACCAATGTGA+GGG | - | chr1.4:68756381-68756400 | None:intergenic | 30.0% | |
| GAGATAATCACCAAACTAAA+TGG | - | chr1.4:68756041-68756060 | None:intergenic | 30.0% | |
| GATTTGTAATTTCCTAAGGA+TGG | + | chr1.4:68755898-68755917 | MS.gene21044:intron | 30.0% | |
| TAGTCAAAATGTGGTTGTTT+CGG | + | chr1.4:68755140-68755159 | MS.gene21044:intron | 30.0% | |
| TGAAAATGTGATGTGAAACT+AGG | - | chr1.4:68756296-68756315 | None:intergenic | 30.0% | |
| TGAAACAATAAACCAATGTG+AGG | - | chr1.4:68756382-68756401 | None:intergenic | 30.0% | |
| TGTAAAGTTGCTGACATATA+GGG | + | chr1.4:68755790-68755809 | MS.gene21044:intron | 30.0% | |
| TTTGGTAAAACCAACGATAT+TGG | - | chr1.4:68755508-68755527 | None:intergenic | 30.0% | |
| ! | AATTTTGCTCTTTTTATGGC+AGG | - | chr1.4:68755337-68755356 | None:intergenic | 30.0% |
| ! | GCACAATTTTGCTCTTTTTA+TGG | - | chr1.4:68755341-68755360 | None:intergenic | 30.0% |
| ! | GGTTTTACCAAATGCAAAAA+AGG | + | chr1.4:68755516-68755535 | MS.gene21044:CDS | 30.0% |
| ! | GTTGGCATTTTACATTCTAT+CGG | + | chr1.4:68754382-68754401 | MS.gene21044:CDS | 30.0% |
| ! | TGCTGTGTTTTGTATTTGAT+AGG | + | chr1.4:68754352-68754371 | MS.gene21044:intron | 30.0% |
| ! | TGGAATGAAATTGATGATCT+TGG | + | chr1.4:68754518-68754537 | MS.gene21044:CDS | 30.0% |
| ! | TTTCTTTCACGTTCTTTTCA+AGG | + | chr1.4:68754245-68754264 | MS.gene21044:CDS | 30.0% |
| ! | TTTGGTGATTATCTCTTGAA+AGG | + | chr1.4:68756046-68756065 | MS.gene21044:intron | 30.0% |
| !! | ATGGTGTTATAGTCAAAATG+TGG | + | chr1.4:68755131-68755150 | MS.gene21044:intron | 30.0% |
| !! | CACTGATTTGTAATTTCCTA+AGG | + | chr1.4:68755894-68755913 | MS.gene21044:intron | 30.0% |
| !!! | GAATTTTAGTTGGAATGAGA+TGG | + | chr1.4:68754495-68754514 | MS.gene21044:CDS | 30.0% |
| !!! | TTGCATACCTTTTTTGCATT+TGG | - | chr1.4:68755526-68755545 | None:intergenic | 30.0% |
| !!! | TTTTTTTACGTAAGCCATCA+TGG | + | chr1.4:68754742-68754761 | MS.gene21044:intron | 30.0% |
| AAACGTTGAATTTACCTGGT+TGG | - | chr1.4:68754086-68754105 | None:intergenic | 35.0% | |
| AAAGAAACAAGTCCTTGGAT+TGG | - | chr1.4:68754232-68754251 | None:intergenic | 35.0% | |
| AAATTGTGCTCTCTGGTAAT+TGG | + | chr1.4:68755352-68755371 | MS.gene21044:intron | 35.0% | |
| AACAATAAACCAATGTGAGG+GGG | - | chr1.4:68756379-68756398 | None:intergenic | 35.0% | |
| AACCTGATTAGCATGAGAAT+GGG | + | chr1.4:68754920-68754939 | MS.gene21044:intron | 35.0% | |
| AACGTTGAATTTACCTGGTT+GGG | - | chr1.4:68754085-68754104 | None:intergenic | 35.0% | |
| AATATATCAAGCCCATCCTT+AGG | - | chr1.4:68755913-68755932 | None:intergenic | 35.0% | |
| AGAAATCCTTCATATTGGGA+GGG | - | chr1.4:68756355-68756374 | None:intergenic | 35.0% | |
| ATCACCAAACTAAATGGTTG+TGG | - | chr1.4:68756035-68756054 | None:intergenic | 35.0% | |
| CTATATAATCTCTTACCGCA+AGG | - | chr1.4:68755066-68755085 | None:intergenic | 35.0% | |
| CTATCATAAACTCTCCATGA+TGG | - | chr1.4:68754759-68754778 | None:intergenic | 35.0% | |
| GAAACACAAACGAAAACAAG+AGG | - | chr1.4:68756218-68756237 | None:intergenic | 35.0% | |
| GAACACTTACATCTTGATCA+AGG | - | chr1.4:68754568-68754587 | None:intergenic | 35.0% | |
| GGATGAACAAGAAAGATTCA+TGG | + | chr1.4:68755020-68755039 | MS.gene21044:CDS | 35.0% | |
| GGTACATGAATTTAGTAGTC+AGG | - | chr1.4:68755819-68755838 | None:intergenic | 35.0% | |
| GTGTAAAGTTGCTGACATAT+AGG | + | chr1.4:68755789-68755808 | MS.gene21044:intron | 35.0% | |
| TAATCGCCCAACTAAAACAA+TGG | - | chr1.4:68756128-68756147 | None:intergenic | 35.0% | |
| TAGTCATGTTAAGGTGTAAC+TGG | - | chr1.4:68755867-68755886 | None:intergenic | 35.0% | |
| TATGAAAACATTCATGCCGT+AGG | + | chr1.4:68756258-68756277 | MS.gene21044:intron | 35.0% | |
| TCAAACAAACTCCTACAACA+AGG | - | chr1.4:68755473-68755492 | None:intergenic | 35.0% | |
| TCATATAAGTGCTTACGTGT+AGG | + | chr1.4:68754684-68754703 | MS.gene21044:intron | 35.0% | |
| TCTTCAACCATTCTTAGATC+TGG | + | chr1.4:68754106-68754125 | MS.gene21044:intron | 35.0% | |
| TTAATGGGATTGGGAACTTT+GGG | + | chr1.4:68756191-68756210 | MS.gene21044:intron | 35.0% | |
| TTGAAAACTACTCCAATCCA+AGG | + | chr1.4:68754217-68754236 | MS.gene21044:CDS | 35.0% | |
| ! | AACACTAAATGCTGACTGTA+AGG | - | chr1.4:68756529-68756548 | None:intergenic | 35.0% |
| ! | AAGGATGGGCTTGATATATT+TGG | + | chr1.4:68755913-68755932 | MS.gene21044:intron | 35.0% |
| ! | ACTTCCTGAATAAGTCTTGT+CGG | - | chr1.4:68755192-68755211 | None:intergenic | 35.0% |
| ! | AGAAAGATTCATGGCTTTTC+TGG | + | chr1.4:68755029-68755048 | MS.gene21044:CDS | 35.0% |
| ! | AGTCAAAATGTGGTTGTTTC+GGG | + | chr1.4:68755141-68755160 | MS.gene21044:intron | 35.0% |
| ! | ATCTCTTGAAAGGCATAAGT+AGG | + | chr1.4:68756147-68756166 | MS.gene21044:intron | 35.0% |
| ! | CAAGTTGGAATAATCCAAAC+CGG | + | chr1.4:68754862-68754881 | MS.gene21044:intron | 35.0% |
| ! | GGCATTCATTTTATATTCCC+AGG | + | chr1.4:68756077-68756096 | MS.gene21044:intron | 35.0% |
| ! | GTGATAGTTCAGTTTTGCTT+AGG | + | chr1.4:68755103-68755122 | MS.gene21044:intron | 35.0% |
| ! | GTTTTGTATTTGATAGGCTG+CGG | + | chr1.4:68754358-68754377 | MS.gene21044:intron | 35.0% |
| ! | TCTTGCTGCTCTTGATTTTT+GGG | + | chr1.4:68754451-68754470 | MS.gene21044:CDS | 35.0% |
| ! | TGCTTTTGTAGTAGACAAGT+TGG | + | chr1.4:68754847-68754866 | MS.gene21044:intron | 35.0% |
| ! | TTCTTGCTGCTCTTGATTTT+TGG | + | chr1.4:68754450-68754469 | MS.gene21044:CDS | 35.0% |
| !! | ATCTCTTGAAAGGCATTAGT+AGG | + | chr1.4:68756056-68756075 | MS.gene21044:intron | 35.0% |
| !! | GTCAGTGGAAGAATTTTAGT+TGG | + | chr1.4:68754485-68754504 | MS.gene21044:CDS | 35.0% |
| !! | TTTTAGTTGGAATGAGATGG+TGG | + | chr1.4:68754498-68754517 | MS.gene21044:CDS | 35.0% |
| !!! | TTACGGCCATTGTTTTAGTT+GGG | + | chr1.4:68756119-68756138 | MS.gene21044:intron | 35.0% |
| AACCCATTCTCATGCTAATC+AGG | - | chr1.4:68754925-68754944 | None:intergenic | 40.0% | |
| AACGATATTGGCAATGCTGA+GGG | - | chr1.4:68755496-68755515 | None:intergenic | 40.0% | |
| AAGAGCAAAATTGTGCTCTC+TGG | + | chr1.4:68755345-68755364 | MS.gene21044:intron | 40.0% | |
| AAGTTCCCAATCCCATTAAC+AGG | - | chr1.4:68756190-68756209 | None:intergenic | 40.0% | |
| AATCTCTTACCGCAAGGTAA+AGG | - | chr1.4:68755060-68755079 | None:intergenic | 40.0% | |
| ACGTGAAAGAAACAAGTCCT+TGG | - | chr1.4:68754237-68754256 | None:intergenic | 40.0% | |
| AGCTCTGTTAATTATCACGG+CGG | + | chr1.4:68755277-68755296 | MS.gene21044:intron | 40.0% | |
| AGTACCCTGTTAATGGGATT+GGG | + | chr1.4:68756182-68756201 | MS.gene21044:intron | 40.0% | |
| AGTTCCCAATCCCATTAACA+GGG | - | chr1.4:68756189-68756208 | None:intergenic | 40.0% | |
| ATCTCTTACCGCAAGGTAAA+GGG | - | chr1.4:68755059-68755078 | None:intergenic | 40.0% | |
| CAGAAATCCTTCATATTGGG+AGG | - | chr1.4:68756356-68756375 | None:intergenic | 40.0% | |
| GAACCTGATTAGCATGAGAA+TGG | + | chr1.4:68754919-68754938 | MS.gene21044:intron | 40.0% | |
| GGAACCACAACCATTTAGTT+TGG | + | chr1.4:68756028-68756047 | MS.gene21044:intron | 40.0% | |
| GGGCAGAAATCCTTCATATT+GGG | - | chr1.4:68756359-68756378 | None:intergenic | 40.0% | |
| GTTAATGGGATTGGGAACTT+TGG | + | chr1.4:68756190-68756209 | MS.gene21044:intron | 40.0% | |
| TAACCCGACAAGACTTATTC+AGG | + | chr1.4:68755185-68755204 | MS.gene21044:intron | 40.0% | |
| TAAGGTAGATGAAAACCGAG+AGG | - | chr1.4:68756511-68756530 | None:intergenic | 40.0% | |
| TAGCTGCATTCTTGTATCTG+TGG | + | chr1.4:68756003-68756022 | MS.gene21044:intron | 40.0% | |
| TAGTACCCTGTTAATGGGAT+TGG | + | chr1.4:68756181-68756200 | MS.gene21044:intron | 40.0% | |
| TCAGCAACTTTACACGAAGT+GGG | - | chr1.4:68755784-68755803 | None:intergenic | 40.0% | |
| TGGCAATATTCTCCCTCATA+AGG | + | chr1.4:68755430-68755449 | MS.gene21044:CDS | 40.0% | |
| TTGGGCGATTATCTCTTGAA+AGG | + | chr1.4:68756137-68756156 | MS.gene21044:intron | 40.0% | |
| TTTCCTTTCACTGCAGTCAT+TGG | + | chr1.4:68754994-68755013 | MS.gene21044:intron | 40.0% | |
| ! | AAAGTGACGGAGATATAACG+AGG | - | chr1.4:68754888-68754907 | None:intergenic | 40.0% |
| ! | AAGATTCATGGCTTTTCTGG+TGG | + | chr1.4:68755032-68755051 | MS.gene21044:CDS | 40.0% |
| ! | CAGTTTTGCTTAGGTGCTTA+TGG | + | chr1.4:68755112-68755131 | MS.gene21044:intron | 40.0% |
| ! | CTCTTTTTATGGCAGGATGT+GGG | - | chr1.4:68755330-68755349 | None:intergenic | 40.0% |
| ! | CTTCCTGAATAAGTCTTGTC+GGG | - | chr1.4:68755191-68755210 | None:intergenic | 40.0% |
| ! | GCTGATTATCTCCTTGTTGT+AGG | + | chr1.4:68755459-68755478 | MS.gene21044:CDS | 40.0% |
| ! | TTTTCGAAATAGGGCCTGTT+TGG | + | chr1.4:68754622-68754641 | MS.gene21044:intron | 40.0% |
| !! | ATACTGCTTGGGAGTGTTTA+TGG | - | chr1.4:68754821-68754840 | None:intergenic | 40.0% |
| !! | ATGATCTTGGTGAGAGTGTT+TGG | + | chr1.4:68754531-68754550 | MS.gene21044:CDS | 40.0% |
| !! | GCAGAATTGGTTTAGGTTGA+TGG | + | chr1.4:68755589-68755608 | MS.gene21044:intron | 40.0% |
| !!! | GTTACGGCCATTGTTTTAGT+TGG | + | chr1.4:68756118-68756137 | MS.gene21044:intron | 40.0% |
| AAGCACTCGTGATACTGCTT+GGG | - | chr1.4:68754832-68754851 | None:intergenic | 45.0% | |
| ATCCTTCATATTGGGAGGGA+AGG | - | chr1.4:68756351-68756370 | None:intergenic | 45.0% | |
| ATTCTCCCTCATAAGGCTTC+AGG | + | chr1.4:68755437-68755456 | MS.gene21044:CDS | 45.0% | |
| CAACGATATTGGCAATGCTG+AGG | - | chr1.4:68755497-68755516 | None:intergenic | 45.0% | |
| CTCAGCATTGCCAATATCGT+TGG | + | chr1.4:68755495-68755514 | MS.gene21044:CDS | 45.0% | |
| CTCTGTTAATTATCACGGCG+GGG | + | chr1.4:68755279-68755298 | MS.gene21044:intron | 45.0% | |
| CTGCATTCTTGTATCTGTGG+CGG | + | chr1.4:68756006-68756025 | MS.gene21044:intron | 45.0% | |
| GCTCTGTTAATTATCACGGC+GGG | + | chr1.4:68755278-68755297 | MS.gene21044:intron | 45.0% | |
| GGGGCAGAAATCCTTCATAT+TGG | - | chr1.4:68756360-68756379 | None:intergenic | 45.0% | |
| GTCAGCAACTTTACACGAAG+TGG | - | chr1.4:68755785-68755804 | None:intergenic | 45.0% | |
| TAGCCAATGACTGCAGTGAA+AGG | - | chr1.4:68755000-68755019 | None:intergenic | 45.0% | |
| TAGGCTTAGAGAAGCTCCTA+CGG | - | chr1.4:68756277-68756296 | None:intergenic | 45.0% | |
| TCAGCAGAGTCGAAAAGTGA+CGG | - | chr1.4:68754901-68754920 | None:intergenic | 45.0% | |
| TGCATTCTTGTATCTGTGGC+GGG | + | chr1.4:68756007-68756026 | MS.gene21044:intron | 45.0% | |
| TGGGTGGTTAAGAATGTCAG+TGG | + | chr1.4:68754470-68754489 | MS.gene21044:CDS | 45.0% | |
| ! | AAAGCACTCGTGATACTGCT+TGG | - | chr1.4:68754833-68754852 | None:intergenic | 45.0% |
| ! | AATCAGCCTGAAGCCTTATG+AGG | - | chr1.4:68755446-68755465 | None:intergenic | 45.0% |
| ! | ATCAGCCTGAAGCCTTATGA+GGG | - | chr1.4:68755445-68755464 | None:intergenic | 45.0% |
| ! | GCTCTTTTTATGGCAGGATG+TGG | - | chr1.4:68755331-68755350 | None:intergenic | 45.0% |
| ! | GGCAGTACTGTGGATTATGT+TGG | + | chr1.4:68755410-68755429 | MS.gene21044:intron | 45.0% |
| ! | TTTCACTGCAGTCATTGGCT+AGG | + | chr1.4:68754999-68755018 | MS.gene21044:intron | 45.0% |
| !! | TGCTGCTCTTGATTTTTGGG+TGG | + | chr1.4:68754454-68754473 | MS.gene21044:CDS | 45.0% |
| CCTCTCAGACAATTGCCTCT+CGG | + | chr1.4:68756493-68756512 | MS.gene21044:CDS | 50.0% | |
| CTCCTTCCCTCCCAATATGA+AGG | + | chr1.4:68756346-68756365 | MS.gene21044:intron | 50.0% | |
| GAGATATAACGAGGCCGGTT+TGG | - | chr1.4:68754879-68754898 | None:intergenic | 50.0% | |
| TATTGGGAGGGAAGGAGAGA+CGG | - | chr1.4:68756343-68756362 | None:intergenic | 50.0% | |
| TATTTGATAGGCTGCGGCGT+TGG | + | chr1.4:68754364-68754383 | MS.gene21044:intron | 50.0% | |
| TGACGGAGATATAACGAGGC+CGG | - | chr1.4:68754884-68754903 | None:intergenic | 50.0% | |
| TGCTTCTACAGGCAGTACTG+TGG | + | chr1.4:68755400-68755419 | MS.gene21044:intron | 50.0% | |
| ATTGGGAGGGAAGGAGAGAC+GGG | - | chr1.4:68756342-68756361 | None:intergenic | 55.0% | |
| CCGAGAGGCAATTGTCTGAG+AGG | - | chr1.4:68756496-68756515 | None:intergenic | 55.0% | |
| GGATTTCTGCCCCCTCACAT+TGG | + | chr1.4:68756367-68756386 | MS.gene21044:intron | 55.0% | |
| ! | CTGGTGGACCCTTTACCTTG+CGG | + | chr1.4:68755048-68755067 | MS.gene21044:CDS | 55.0% |
| TTGGGAGGGAAGGAGAGACG+GGG | - | chr1.4:68756341-68756360 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 68754076 | 68756554 | 68754076 | ID=MS.gene21044 |
| chr1.4 | mRNA | 68754076 | 68756554 | 68754076 | ID=MS.gene21044.t1;Parent=MS.gene21044 |
| chr1.4 | exon | 68754076 | 68754090 | 68754076 | ID=MS.gene21044.t1.exon1;Parent=MS.gene21044.t1 |
| chr1.4 | CDS | 68754076 | 68754090 | 68754076 | ID=cds.MS.gene21044.t1;Parent=MS.gene21044.t1 |
| chr1.4 | exon | 68754210 | 68754266 | 68754210 | ID=MS.gene21044.t1.exon2;Parent=MS.gene21044.t1 |
| chr1.4 | CDS | 68754210 | 68754266 | 68754210 | ID=cds.MS.gene21044.t1;Parent=MS.gene21044.t1 |
| chr1.4 | exon | 68754374 | 68754577 | 68754374 | ID=MS.gene21044.t1.exon3;Parent=MS.gene21044.t1 |
| chr1.4 | CDS | 68754374 | 68754577 | 68754374 | ID=cds.MS.gene21044.t1;Parent=MS.gene21044.t1 |
| chr1.4 | exon | 68755010 | 68755069 | 68755010 | ID=MS.gene21044.t1.exon4;Parent=MS.gene21044.t1 |
| chr1.4 | CDS | 68755010 | 68755069 | 68755010 | ID=cds.MS.gene21044.t1;Parent=MS.gene21044.t1 |
| chr1.4 | exon | 68755411 | 68755537 | 68755411 | ID=MS.gene21044.t1.exon5;Parent=MS.gene21044.t1 |
| chr1.4 | CDS | 68755411 | 68755537 | 68755411 | ID=cds.MS.gene21044.t1;Parent=MS.gene21044.t1 |
| chr1.4 | exon | 68756466 | 68756554 | 68756466 | ID=MS.gene21044.t1.exon6;Parent=MS.gene21044.t1 |
| chr1.4 | CDS | 68756466 | 68756554 | 68756466 | ID=cds.MS.gene21044.t1;Parent=MS.gene21044.t1 |
| Gene Sequence |
| Protein sequence |
