Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049140.t1 | XP_003630831.2 | 98.2 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 4.50E-51 | 210.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049140.t1 | A0L5Z9 | 56.1 | 107 | 46 | 1 | 5 | 110 | 8 | 114 | 3.9e-27 | 122.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049140.t1 | G7L907 | 98.2 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 3.3e-51 | 210.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049140 | MS.gene050277 | 0.813603 | 2.35E-51 | -1.69E-46 |
| MS.gene049140 | MS.gene051746 | 0.820847 | 5.52E-53 | -1.69E-46 |
| MS.gene049140 | MS.gene051748 | 0.822685 | 2.08E-53 | -1.69E-46 |
| MS.gene049140 | MS.gene051903 | 0.806109 | 9.65E-50 | -1.69E-46 |
| MS.gene049140 | MS.gene057094 | 0.802703 | 4.95E-49 | -1.69E-46 |
| MS.gene049140 | MS.gene057999 | 0.804122 | 2.51E-49 | -1.69E-46 |
| MS.gene049140 | MS.gene058238 | 0.81133 | 7.39E-51 | -1.69E-46 |
| MS.gene049140 | MS.gene05937 | 0.803417 | 3.52E-49 | -1.69E-46 |
| MS.gene049140 | MS.gene06001 | 0.803636 | 3.17E-49 | -1.69E-46 |
| MS.gene049140 | MS.gene06349 | -0.800852 | 1.19E-48 | -1.69E-46 |
| MS.gene049140 | MS.gene066035 | 0.811212 | 7.84E-51 | -1.69E-46 |
| MS.gene049140 | MS.gene06667 | 0.819038 | 1.43E-52 | -1.69E-46 |
| MS.gene049140 | MS.gene067571 | 0.817369 | 3.42E-52 | -1.69E-46 |
| MS.gene049140 | MS.gene068752 | 0.801693 | 7.98E-49 | -1.69E-46 |
| MS.gene049140 | MS.gene06883 | 0.826436 | 2.72E-54 | -1.69E-46 |
| MS.gene049140 | MS.gene069310 | 0.82387 | 1.10E-53 | -1.69E-46 |
| MS.gene049140 | MS.gene06982 | 0.806681 | 7.31E-50 | -1.69E-46 |
| MS.gene049140 | MS.gene06984 | 0.817387 | 3.39E-52 | -1.69E-46 |
| MS.gene049140 | MS.gene069962 | 0.817359 | 3.44E-52 | -1.69E-46 |
| MS.gene049140 | MS.gene07101 | 0.820941 | 5.26E-53 | -1.69E-46 |
| MS.gene049140 | MS.gene072057 | 0.840903 | 6.57E-58 | -1.69E-46 |
| MS.gene049140 | MS.gene07222 | 0.802235 | 6.18E-49 | -1.69E-46 |
| MS.gene049140 | MS.gene072386 | 0.801391 | 9.20E-49 | -1.69E-46 |
| MS.gene049140 | MS.gene073564 | 0.822404 | 2.41E-53 | -1.69E-46 |
| MS.gene049140 | MS.gene074369 | 0.820133 | 8.06E-53 | -1.69E-46 |
| MS.gene049140 | MS.gene21044 | 0.804544 | 2.05E-49 | -1.69E-46 |
| MS.gene049140 | MS.gene23954 | 0.828075 | 1.10E-54 | -1.69E-46 |
| MS.gene049140 | MS.gene25942 | 0.825403 | 4.78E-54 | -1.69E-46 |
| MS.gene049140 | MS.gene30158 | -0.827648 | 1.39E-54 | -1.69E-46 |
| MS.gene049140 | MS.gene31405 | 0.80318 | 3.94E-49 | -1.69E-46 |
| MS.gene049140 | MS.gene41086 | 0.805285 | 1.44E-49 | -1.69E-46 |
| MS.gene049140 | MS.gene42247 | 0.818696 | 1.71E-52 | -1.69E-46 |
| MS.gene049140 | MS.gene55544 | 0.80523 | 1.48E-49 | -1.69E-46 |
| MS.gene049140 | MS.gene55732 | 0.806899 | 6.57E-50 | -1.69E-46 |
| MS.gene049140 | MS.gene56656 | 0.819002 | 1.46E-52 | -1.69E-46 |
| MS.gene049140 | MS.gene57847 | 0.809537 | 1.80E-50 | -1.69E-46 |
| MS.gene049140 | MS.gene59712 | 0.800695 | 1.28E-48 | -1.69E-46 |
| MS.gene049140 | MS.gene60717 | 0.808402 | 3.15E-50 | -1.69E-46 |
| MS.gene049140 | MS.gene61543 | 0.828089 | 1.09E-54 | -1.69E-46 |
| MS.gene049140 | MS.gene62834 | 0.836268 | 1.03E-56 | -1.69E-46 |
| MS.gene049140 | MS.gene64085 | -0.805992 | 1.02E-49 | -1.69E-46 |
| MS.gene049140 | MS.gene66089 | 0.802006 | 6.88E-49 | -1.69E-46 |
| MS.gene049140 | MS.gene66818 | 0.808681 | 2.75E-50 | -1.69E-46 |
| MS.gene049140 | MS.gene67485 | 0.810669 | 1.03E-50 | -1.69E-46 |
| MS.gene049140 | MS.gene69499 | 0.81602 | 6.86E-52 | -1.69E-46 |
| MS.gene049140 | MS.gene70613 | 0.82599 | 3.47E-54 | -1.69E-46 |
| MS.gene049140 | MS.gene71811 | 0.80138 | 9.25E-49 | -1.69E-46 |
| MS.gene049140 | MS.gene72285 | 0.825785 | 3.88E-54 | -1.69E-46 |
| MS.gene049140 | MS.gene74407 | 0.800754 | 1.24E-48 | -1.69E-46 |
| MS.gene049140 | MS.gene74938 | 0.815227 | 1.03E-51 | -1.69E-46 |
| MS.gene049140 | MS.gene79605 | 0.832397 | 9.68E-56 | -1.69E-46 |
| MS.gene049140 | MS.gene86392 | 0.831947 | 1.25E-55 | -1.69E-46 |
| MS.gene049140 | MS.gene89027 | 0.828543 | 8.48E-55 | -1.69E-46 |
| MS.gene049140 | MS.gene92135 | 0.813978 | 1.95E-51 | -1.69E-46 |
| MS.gene049140 | MS.gene92557 | 0.83076 | 2.45E-55 | -1.69E-46 |
| MS.gene049140 | MS.gene92572 | 0.813338 | 2.69E-51 | -1.69E-46 |
| MS.gene049140 | MS.gene92818 | 0.821009 | 5.07E-53 | -1.69E-46 |
| MS.gene049140 | MS.gene92819 | 0.828161 | 1.05E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31468 | MS.gene049140 | PPI |
| MS.gene049140 | MS.gene60589 | PPI |
| MS.gene049140 | MS.gene82915 | PPI |
| MS.gene049140 | MS.gene05937 | PPI |
| MS.gene049140 | MS.gene001687 | PPI |
| MS.gene049140 | MS.gene06427 | PPI |
| MS.gene049140 | MS.gene30981 | PPI |
| MS.gene049140 | MS.gene043435 | PPI |
| MS.gene34167 | MS.gene049140 | PPI |
| MS.gene049140 | MS.gene60861 | PPI |
| MS.gene013330 | MS.gene049140 | PPI |
| MS.gene049140 | MS.gene001444 | PPI |
| MS.gene049140 | MS.gene005865 | PPI |
| MS.gene049140 | MS.gene001446 | PPI |
| MS.gene049140 | MS.gene026968 | PPI |
| MS.gene049140 | MS.gene04780 | PPI |
| MS.gene049140 | MS.gene028903 | PPI |
| MS.gene049140 | MS.gene055808 | PPI |
| MS.gene049140 | MS.gene015732 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049140.t1 | MTR_8g103900 | 98.182 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 9.29e-77 | 223 |
| MS.gene049140.t1 | MTR_3g095900 | 97.273 | 110 | 3 | 0 | 1 | 110 | 1 | 110 | 2.55e-76 | 222 |
| MS.gene049140.t1 | MTR_3g062930 | 43.519 | 108 | 61 | 0 | 3 | 110 | 104 | 211 | 2.67e-27 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049140.t1 | AT5G09770 | 85.455 | 110 | 16 | 0 | 1 | 110 | 1 | 110 | 2.29e-67 | 200 |
| MS.gene049140.t1 | AT5G64650 | 85.455 | 110 | 16 | 0 | 1 | 110 | 1 | 110 | 3.36e-67 | 199 |
| MS.gene049140.t1 | AT3G54210 | 44.762 | 105 | 58 | 0 | 6 | 110 | 104 | 208 | 1.43e-27 | 100 |
Find 30 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGGCTAAGGAGGTTAGA+AGG | 0.294585 | 4.1:-2523717 | MS.gene049140:intron |
| TAGAAGGGTTGCAGATAATA+TGG | 0.357326 | 4.1:-2523701 | MS.gene049140:CDS |
| TGTTTACAGAACTGGCTTAT+CGG | 0.376930 | 4.1:-2521660 | MS.gene049140:CDS |
| TCACAAGCTGTTTACAGAAC+TGG | 0.397878 | 4.1:-2521668 | MS.gene049140:CDS |
| TCGATTCAGCTTCCTGAACT+TGG | 0.412475 | 4.1:+2524018 | None:intergenic |
| CTGAGAAAATGACCAAGTTC+AGG | 0.415630 | 4.1:-2524030 | None:intergenic |
| ATAGAACTGGTGGATATACT+AGG | 0.438895 | 4.1:-2521545 | MS.gene049140:CDS |
| TTAGGCTAAGGAGGTTAGAA+GGG | 0.463555 | 4.1:-2523716 | MS.gene049140:intron |
| AGCTCGCCTTGCAGCACATA+CGG | 0.485413 | 4.1:+2521720 | None:intergenic |
| TTAACCTGAGCATGGATATC+CGG | 0.493435 | 4.1:+2523984 | None:intergenic |
| AACAGAGATTTACTCAATAT+AGG | 0.495924 | 4.1:+2521479 | None:intergenic |
| GTGGATATACTAGGGTGTTA+CGG | 0.513509 | 4.1:-2521536 | MS.gene049140:CDS |
| TATGGTACAGCTTGGTAAAG+AGG | 0.517654 | 4.1:-2523683 | MS.gene049140:intron |
| TAGAACCATGGTCTCGCAGT+TGG | 0.542039 | 4.1:-2523875 | MS.gene049140:CDS |
| TGAATCGAGAAACGTCTCAC+CGG | 0.546451 | 4.1:-2524003 | MS.gene049140:CDS |
| TTGTTATTTATTTAGAACCA+TGG | 0.549464 | 4.1:-2523887 | MS.gene049140:intron |
| ATTTACTCAATATAGGCCAT+TGG | 0.558368 | 4.1:+2521486 | None:intergenic |
| TTACGGACTCGCATTCGAGT+TGG | 0.558431 | 4.1:-2521519 | MS.gene049140:CDS |
| CTCACCGGATATCCATGCTC+AGG | 0.569855 | 4.1:-2523988 | MS.gene049140:intron |
| AGTTGGTGATGCTGCACCAA+TGG | 0.577706 | 4.1:-2521502 | MS.gene049140:CDS |
| CCATGGTCTCGCAGTTGGTG+AGG | 0.580724 | 4.1:-2523870 | MS.gene049140:CDS |
| CATTGAAACTACTATTACCA+AGG | 0.585744 | 4.1:-2523839 | MS.gene049140:intron |
| GCAGATAATATGGTACAGCT+TGG | 0.590005 | 4.1:-2523691 | MS.gene049140:CDS |
| CCTCACCAACTGCGAGACCA+TGG | 0.601685 | 4.1:+2523870 | None:intergenic |
| TAGAACTGGTGGATATACTA+GGG | 0.605628 | 4.1:-2521544 | MS.gene049140:CDS |
| AAAGCATGTTAACCTGAGCA+TGG | 0.605726 | 4.1:+2523976 | None:intergenic |
| AGGGATCCGTATGTGCTGCA+AGG | 0.620707 | 4.1:-2521726 | MS.gene049140:CDS |
| GTGTTGTGCAGAGATAGAAC+TGG | 0.623312 | 4.1:-2521558 | MS.gene049140:intron |
| TTGTGCAGAGATAGAACTGG+TGG | 0.666108 | 4.1:-2521555 | MS.gene049140:intron |
| CGAGCTGCTAGTTTCGTGCG+AGG | 0.670232 | 4.1:-2521703 | MS.gene049140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGGTTTAAAAAATATATATT+GGG | + | chr4.1:2521958-2521977 | None:intergenic | 10.0% |
| !!! | AAATTTAATTTATATTACCT+TGG | + | chr4.1:2521695-2521714 | None:intergenic | 10.0% |
| !! | CTGGTTTAAAAAATATATAT+TGG | + | chr4.1:2521959-2521978 | None:intergenic | 15.0% |
| !! | AACAAAAGTAGAGAAAAATA+AGG | + | chr4.1:2523123-2523142 | None:intergenic | 20.0% |
| !! | AAGAAAAAAAAAAATAGGCA+TGG | + | chr4.1:2521577-2521596 | None:intergenic | 20.0% |
| !! | AATGCTTGAAATATAAAGAA+TGG | - | chr4.1:2523224-2523243 | MS.gene049140:intron | 20.0% |
| !! | AGAAAAAAAAAAATAGGCAT+GGG | + | chr4.1:2521576-2521595 | None:intergenic | 20.0% |
| !! | ATATTATAACTACTAATCAG+CGG | - | chr4.1:2522718-2522737 | MS.gene049140:intron | 20.0% |
| !! | GAAGGAAGAAAAAAAAAAAT+AGG | + | chr4.1:2521582-2521601 | None:intergenic | 20.0% |
| !! | GAATTTAAATTAAAGTTTGC+TGG | - | chr4.1:2521761-2521780 | MS.gene049140:intron | 20.0% |
| !! | TAATGAACTGGATAAAAATA+TGG | - | chr4.1:2522390-2522409 | MS.gene049140:intron | 20.0% |
| !!! | ATTTTTCTCTACTTTTGTTT+TGG | - | chr4.1:2523124-2523143 | MS.gene049140:intron | 20.0% |
| !!! | TTGTTATTTATTTAGAACCA+TGG | - | chr4.1:2521627-2521646 | MS.gene049140:intron | 20.0% |
| ! | AAAGTAGAGAAAAATAAGGA+AGG | + | chr4.1:2523119-2523138 | None:intergenic | 25.0% |
| ! | AACATATAACACTTGAATAC+TGG | + | chr4.1:2521978-2521997 | None:intergenic | 25.0% |
| ! | AAGAACAATTAACTTAATGC+AGG | - | chr4.1:2523266-2523285 | MS.gene049140:intron | 25.0% |
| ! | AATATATATTGGGTGATCAA+TGG | + | chr4.1:2521948-2521967 | None:intergenic | 25.0% |
| ! | AGAACAATTAACTTAATGCA+GGG | - | chr4.1:2523267-2523286 | MS.gene049140:intron | 25.0% |
| ! | AGTTTACACGATAAATTGTT+AGG | - | chr4.1:2523768-2523787 | MS.gene049140:intron | 25.0% |
| ! | ATAAAAAATATCCATAGCCA+TGG | + | chr4.1:2523665-2523684 | None:intergenic | 25.0% |
| ! | ATAAATGTTGAGTAAATCAG+TGG | - | chr4.1:2522634-2522653 | MS.gene049140:intron | 25.0% |
| ! | ATCTTGAGCATAAATTTGAT+AGG | - | chr4.1:2523694-2523713 | MS.gene049140:CDS | 25.0% |
| ! | GTTTACACGATAAATTGTTA+GGG | - | chr4.1:2523769-2523788 | MS.gene049140:intron | 25.0% |
| ! | TAAATGTTGAGTAAATCAGT+GGG | - | chr4.1:2522635-2522654 | MS.gene049140:intron | 25.0% |
| ! | TATTATAACTACTAATCAGC+GGG | - | chr4.1:2522719-2522738 | MS.gene049140:intron | 25.0% |
| ! | TTAAAAGAAAGCAGTTATGT+AGG | + | chr4.1:2523382-2523401 | None:intergenic | 25.0% |
| ! | TTAAGATCCATTTAGTAAAC+TGG | - | chr4.1:2523308-2523327 | MS.gene049140:intron | 25.0% |
| ! | TTACTCAACATTTATCTTCA+GGG | + | chr4.1:2522629-2522648 | None:intergenic | 25.0% |
| ! | TTTACTCAACATTTATCTTC+AGG | + | chr4.1:2522630-2522649 | None:intergenic | 25.0% |
| !! | AATTTGATCCTATGCATTTT+CGG | - | chr4.1:2521710-2521729 | MS.gene049140:CDS | 25.0% |
| !! | ACTGGATAAAAATATGGTTT+TGG | - | chr4.1:2522396-2522415 | MS.gene049140:intron | 25.0% |
| !! | AGTAGTTGATATTTGTTTGT+TGG | - | chr4.1:2523167-2523186 | MS.gene049140:intron | 25.0% |
| !! | GTTTAAGTTCAAAAAGTAAG+AGG | - | chr4.1:2522588-2522607 | MS.gene049140:intron | 25.0% |
| !! | TATTGATAGTAGCATATTAG+AGG | + | chr4.1:2523080-2523099 | None:intergenic | 25.0% |
| !!! | CAAACAATATTTTTTCAACC+TGG | - | chr4.1:2522566-2522585 | MS.gene049140:intron | 25.0% |
| !!! | CTGGTTGTAATTTTGATTTT+AGG | - | chr4.1:2521780-2521799 | MS.gene049140:intron | 25.0% |
| !!! | GTAATTTTGATTTTAGGCTA+AGG | - | chr4.1:2521786-2521805 | MS.gene049140:intron | 25.0% |
| !!! | TGGTTGTTTGATTACTTTTA+GGG | - | chr4.1:2523144-2523163 | MS.gene049140:intron | 25.0% |
| !!! | TTACTTTTTGAACTTAAACC+AGG | + | chr4.1:2522587-2522606 | None:intergenic | 25.0% |
| !!! | TTGGTTGTTTGATTACTTTT+AGG | - | chr4.1:2523143-2523162 | MS.gene049140:intron | 25.0% |
| AAAAAAAAAATAGGCATGGG+AGG | + | chr4.1:2521573-2521592 | None:intergenic | 30.0% | |
| ACGGAAATAAAACACAAATG+AGG | + | chr4.1:2523431-2523450 | None:intergenic | 30.0% | |
| CAAATTTATGCTCAAGATCA+AGG | + | chr4.1:2523692-2523711 | None:intergenic | 30.0% | |
| CATTGAAACTACTATTACCA+AGG | - | chr4.1:2521675-2521694 | MS.gene049140:CDS | 30.0% | |
| GTAAGAGGTTTGAAAAATGT+CGG | - | chr4.1:2522603-2522622 | MS.gene049140:intron | 30.0% | |
| TAATCATAGCACAAGTAAGA+CGG | + | chr4.1:2521890-2521909 | None:intergenic | 30.0% | |
| TCCTATTCAACAGATAGTTT+GGG | + | chr4.1:2522870-2522889 | None:intergenic | 30.0% | |
| TGAATACTGATGAAAGATCA+GGG | - | chr4.1:2522742-2522761 | MS.gene049140:intron | 30.0% | |
| TTCTTAAACCGAAAATGCAT+AGG | + | chr4.1:2521721-2521740 | None:intergenic | 30.0% | |
| ! | AACTTTTGCAGAACAGATTT+TGG | + | chr4.1:2522893-2522912 | None:intergenic | 30.0% |
| ! | ATTTATCTAGCTTGACTACT+TGG | - | chr4.1:2523735-2523754 | MS.gene049140:intron | 30.0% |
| ! | CGTTTAGTGCTTTTACATTT+GGG | - | chr4.1:2523448-2523467 | MS.gene049140:intron | 30.0% |
| ! | GTTTCTCTTGTAGTTTTTCT+AGG | + | chr4.1:2522349-2522368 | None:intergenic | 30.0% |
| ! | TCTACCATCTTTTCTACAAT+AGG | + | chr4.1:2522153-2522172 | None:intergenic | 30.0% |
| !! | CCAAATGTAAAAGCACTAAA+CGG | + | chr4.1:2523450-2523469 | None:intergenic | 30.0% |
| !!! | ATTTTGATTTTAGGCTAAGG+AGG | - | chr4.1:2521789-2521808 | MS.gene049140:intron | 30.0% |
| AACTGAGGCAATCAGTATAA+TGG | + | chr4.1:2522988-2523007 | None:intergenic | 35.0% | |
| AACTGTAACAAACATGCATG+TGG | + | chr4.1:2523581-2523600 | None:intergenic | 35.0% | |
| AATATAAAGAATGGCGACAC+TGG | - | chr4.1:2523233-2523252 | MS.gene049140:intron | 35.0% | |
| AGATGGTAGAAACAAGACTT+AGG | - | chr4.1:2522163-2522182 | MS.gene049140:intron | 35.0% | |
| AGCACCTATTGTAGAAAAGA+TGG | - | chr4.1:2522146-2522165 | MS.gene049140:intron | 35.0% | |
| CGCATATCTTATTCTTGTGT+TGG | + | chr4.1:2522055-2522074 | None:intergenic | 35.0% | |
| CTTAAGTTAACGTTCTAACG+TGG | - | chr4.1:2523190-2523209 | MS.gene049140:intron | 35.0% | |
| GAATACTGATGAAAGATCAG+GGG | - | chr4.1:2522743-2522762 | MS.gene049140:intron | 35.0% | |
| GATCAATGGTAAAGAATGAG+AGG | + | chr4.1:2521934-2521953 | None:intergenic | 35.0% | |
| GGATCTAGAGATTAATGAAC+TGG | - | chr4.1:2522378-2522397 | MS.gene049140:intron | 35.0% | |
| GTCCTATTCAACAGATAGTT+TGG | + | chr4.1:2522871-2522890 | None:intergenic | 35.0% | |
| GTGAATACTGATGAAAGATC+AGG | - | chr4.1:2522741-2522760 | MS.gene049140:intron | 35.0% | |
| TACAAGAGAAACTATCGAGA+AGG | - | chr4.1:2522357-2522376 | MS.gene049140:intron | 35.0% | |
| TAGAAGGGTTGCAGATAATA+TGG | - | chr4.1:2521813-2521832 | MS.gene049140:intron | 35.0% | |
| TCCCAAACTATCTGTTGAAT+AGG | - | chr4.1:2522866-2522885 | MS.gene049140:intron | 35.0% | |
| TGAACCAACTAATTGAGAGA+GGG | + | chr4.1:2522816-2522835 | None:intergenic | 35.0% | |
| TGATAGAACCAACACTAGAT+AGG | - | chr4.1:2522121-2522140 | MS.gene049140:intron | 35.0% | |
| TGATGTCTCCAATAAAACCA+TGG | - | chr4.1:2523645-2523664 | MS.gene049140:intron | 35.0% | |
| TGCAGAAAAGATTGAGAAAC+AGG | + | chr4.1:2523359-2523378 | None:intergenic | 35.0% | |
| TTGAACCAACTAATTGAGAG+AGG | + | chr4.1:2522817-2522836 | None:intergenic | 35.0% | |
| ! | ATAGAACTGGTGGATATACT+AGG | - | chr4.1:2523969-2523988 | MS.gene049140:intron | 35.0% |
| ! | CCGTTTAGTGCTTTTACATT+TGG | - | chr4.1:2523447-2523466 | MS.gene049140:intron | 35.0% |
| ! | TAGAACTGGTGGATATACTA+GGG | - | chr4.1:2523970-2523989 | MS.gene049140:intron | 35.0% |
| ! | TGTTTACAGAACTGGCTTAT+CGG | - | chr4.1:2523854-2523873 | MS.gene049140:CDS | 35.0% |
| ! | TTATACTGATTGCCTCAGTT+CGG | - | chr4.1:2522988-2523007 | MS.gene049140:intron | 35.0% |
| ! | TTATGGATTTTCCGCTAACT+CGG | - | chr4.1:2522771-2522790 | MS.gene049140:intron | 35.0% |
| !! | AAAGATCAGGGGTTAGTTTA+TGG | - | chr4.1:2522754-2522773 | MS.gene049140:intron | 35.0% |
| !!! | ATCCATAGCCATGGTTTTAT+TGG | + | chr4.1:2523656-2523675 | None:intergenic | 35.0% |
| !!! | TGGTTTTATTGGAGACATCA+TGG | + | chr4.1:2523645-2523664 | None:intergenic | 35.0% |
| !!! | TGGTTTTGGATAGAACACTA+TGG | - | chr4.1:2522410-2522429 | MS.gene049140:intron | 35.0% |
| AAAAATAGGCATGGGAGGAT+TGG | + | chr4.1:2521568-2521587 | None:intergenic | 40.0% | |
| AAAGCATGTTAACCTGAGCA+TGG | + | chr4.1:2521541-2521560 | None:intergenic | 40.0% | |
| AAGGAGCAAGTGGAAGAAAT+AGG | + | chr4.1:2522257-2522276 | None:intergenic | 40.0% | |
| ACATCTAGAAAGAAGACCTG+TGG | - | chr4.1:2522194-2522213 | MS.gene049140:intron | 40.0% | |
| AGAAAGAAGACCTGTGGTAA+AGG | - | chr4.1:2522200-2522219 | MS.gene049140:intron | 40.0% | |
| AGTAGCCACAGTTCAGAATT+TGG | + | chr4.1:2521604-2521623 | None:intergenic | 40.0% | |
| ATATTGATGAAAGACCGCCA+GGG | - | chr4.1:2522661-2522680 | MS.gene049140:intron | 40.0% | |
| ATGTTGAGTAAATCAGTGGG+TGG | - | chr4.1:2522638-2522657 | MS.gene049140:intron | 40.0% | |
| CTCCAATAAAACCATGGCTA+TGG | - | chr4.1:2523651-2523670 | MS.gene049140:intron | 40.0% | |
| GAAACAAGACTTAGGTGGTT+TGG | - | chr4.1:2522171-2522190 | MS.gene049140:intron | 40.0% | |
| GCAGATAATATGGTACAGCT+TGG | - | chr4.1:2521823-2521842 | MS.gene049140:intron | 40.0% | |
| GTAACAAACATGCATGTGGA+AGG | + | chr4.1:2523577-2523596 | None:intergenic | 40.0% | |
| GTGTGCTCCAGTTTACTAAA+TGG | + | chr4.1:2523318-2523337 | None:intergenic | 40.0% | |
| TATGGTACAGCTTGGTAAAG+AGG | - | chr4.1:2521831-2521850 | MS.gene049140:intron | 40.0% | |
| TCACAAGCTGTTTACAGAAC+TGG | - | chr4.1:2523846-2523865 | MS.gene049140:CDS | 40.0% | |
| TCCTTCCAAATTCTGAACTG+TGG | - | chr4.1:2521596-2521615 | MS.gene049140:intron | 40.0% | |
| TGGTAGAAACAAGACTTAGG+TGG | - | chr4.1:2522166-2522185 | MS.gene049140:intron | 40.0% | |
| TTAACCTGAGCATGGATATC+CGG | + | chr4.1:2521533-2521552 | None:intergenic | 40.0% | |
| TTAGGCTAAGGAGGTTAGAA+GGG | - | chr4.1:2521798-2521817 | MS.gene049140:intron | 40.0% | |
| TTCTCCCTCTCTCAATTAGT+TGG | - | chr4.1:2522809-2522828 | MS.gene049140:intron | 40.0% | |
| TTTAGGCTAAGGAGGTTAGA+AGG | - | chr4.1:2521797-2521816 | MS.gene049140:intron | 40.0% | |
| TTTAGTAAACTGGAGCACAC+AGG | - | chr4.1:2523318-2523337 | MS.gene049140:intron | 40.0% | |
| ! | AAGAAATAGGTGCTATCCAC+AGG | + | chr4.1:2522244-2522263 | None:intergenic | 40.0% |
| ! | ATGGCAACTAATGGTGGAAA+AGG | + | chr4.1:2523626-2523645 | None:intergenic | 40.0% |
| ! | CAGAGATGAGGATGTTACTT+TGG | - | chr4.1:2522078-2522097 | MS.gene049140:intron | 40.0% |
| ! | GTGGATATACTAGGGTGTTA+CGG | - | chr4.1:2523978-2523997 | MS.gene049140:intron | 40.0% |
| ! | TCTAGGTTTTCCTTTACCAC+AGG | + | chr4.1:2522213-2522232 | None:intergenic | 40.0% |
| ! | TGGCAACTAATGGTGGAAAA+GGG | + | chr4.1:2523625-2523644 | None:intergenic | 40.0% |
| !! | ACTATGTTTTAAACCCCTGG+CGG | + | chr4.1:2522678-2522697 | None:intergenic | 40.0% |
| !! | AGGATGTTACTTTGGATGTG+TGG | - | chr4.1:2522086-2522105 | MS.gene049140:intron | 40.0% |
| !! | CTGACTATGTTTTAAACCCC+TGG | + | chr4.1:2522681-2522700 | None:intergenic | 40.0% |
| !! | TCTACCTCTAGGCTTTGTTT+GGG | + | chr4.1:2522320-2522339 | None:intergenic | 40.0% |
| !!! | GAGGGTTTTGGAAAAAAGGA+AGG | + | chr4.1:2522276-2522295 | None:intergenic | 40.0% |
| AACTCCCAAACAAAGCCTAG+AGG | - | chr4.1:2522313-2522332 | MS.gene049140:intron | 45.0% | |
| AAGTCCCGCTTAAGACATGT+TGG | - | chr4.1:2522004-2522023 | MS.gene049140:intron | 45.0% | |
| ACATGTTGGGAGCAGAATGT+TGG | - | chr4.1:2522018-2522037 | MS.gene049140:intron | 45.0% | |
| AGATATGCGTAGCAGAGATG+AGG | - | chr4.1:2522066-2522085 | MS.gene049140:intron | 45.0% | |
| AGCACACAGGCTTCATAGTT+TGG | - | chr4.1:2523331-2523350 | MS.gene049140:intron | 45.0% | |
| AGTCCCGCTTAAGACATGTT+GGG | - | chr4.1:2522005-2522024 | MS.gene049140:intron | 45.0% | |
| ATGTAGCTGATCCCACTTAG+TGG | - | chr4.1:2522446-2522465 | MS.gene049140:intron | 45.0% | |
| CTAGGTCTTTCTCTACCTCT+AGG | + | chr4.1:2522331-2522350 | None:intergenic | 45.0% | |
| GACATCATGGCAACTAATGG+TGG | + | chr4.1:2523632-2523651 | None:intergenic | 45.0% | |
| GATATTGATGAAAGACCGCC+AGG | - | chr4.1:2522660-2522679 | MS.gene049140:intron | 45.0% | |
| GCCACAGTTCAGAATTTGGA+AGG | + | chr4.1:2521600-2521619 | None:intergenic | 45.0% | |
| GGAAAAAAGGAAGGAGCAAG+TGG | + | chr4.1:2522267-2522286 | None:intergenic | 45.0% | |
| GGAGACATCATGGCAACTAA+TGG | + | chr4.1:2523635-2523654 | None:intergenic | 45.0% | |
| GTGTTGTGCAGAGATAGAAC+TGG | - | chr4.1:2523956-2523975 | MS.gene049140:intron | 45.0% | |
| TATTGATGAAAGACCGCCAG+GGG | - | chr4.1:2522662-2522681 | MS.gene049140:intron | 45.0% | |
| TCGATTCAGCTTCCTGAACT+TGG | + | chr4.1:2521499-2521518 | None:intergenic | 45.0% | |
| TGAATCGAGAAACGTCTCAC+CGG | - | chr4.1:2521511-2521530 | MS.gene049140:CDS | 45.0% | |
| TGATCCCACTTAGTGGGATA+AGG | - | chr4.1:2522453-2522472 | MS.gene049140:intron | 45.0% | |
| TGCAACACTATACCGAACTG+AGG | + | chr4.1:2523003-2523022 | None:intergenic | 45.0% | |
| TGCTCCCAACATGTCTTAAG+CGG | + | chr4.1:2522012-2522031 | None:intergenic | 45.0% | |
| TGTAGCTGATCCCACTTAGT+GGG | - | chr4.1:2522447-2522466 | MS.gene049140:intron | 45.0% | |
| TTGTGCAGAGATAGAACTGG+TGG | - | chr4.1:2523959-2523978 | MS.gene049140:intron | 45.0% | |
| ! | AAATAGGTGCTATCCACAGG+TGG | + | chr4.1:2522241-2522260 | None:intergenic | 45.0% |
| ! | AATAGGTGCTATCCACAGGT+GGG | + | chr4.1:2522240-2522259 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr4.1:2522460-2522479 | None:intergenic | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr4.1:2522308-2522327 | None:intergenic | 45.0% |
| ! | GGTGCTATCCTATCTAGTGT+TGG | + | chr4.1:2522132-2522151 | None:intergenic | 45.0% |
| !! | CTAGGCTTTGTTTGGGAGTT+TGG | + | chr4.1:2522313-2522332 | None:intergenic | 45.0% |
| !! | CTCTACCTCTAGGCTTTGTT+TGG | + | chr4.1:2522321-2522340 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr4.1:2522309-2522328 | None:intergenic | 45.0% |
| !!! | AGGGGAGGGTTTTGGAAAAA+AGG | + | chr4.1:2522280-2522299 | None:intergenic | 45.0% |
| ACAGAGAGAAGCCGAGTTAG+CGG | + | chr4.1:2522785-2522804 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr4.1:2522458-2522477 | MS.gene049140:intron | 50.0% | |
| CTTAGTGGGATAAGGCTTGG+TGG | - | chr4.1:2522461-2522480 | MS.gene049140:intron | 50.0% | |
| GCTCCCAACATGTCTTAAGC+GGG | + | chr4.1:2522011-2522030 | None:intergenic | 50.0% | |
| GGGACGCAGCTTCAATCTAA+AGG | + | chr4.1:2522850-2522869 | None:intergenic | 50.0% | |
| GTTGGGAGCAGAATGTTGGA+CGG | - | chr4.1:2522022-2522041 | MS.gene049140:intron | 50.0% | |
| TAGAACCATGGTCTCGCAGT+TGG | - | chr4.1:2521639-2521658 | MS.gene049140:intron | 50.0% | |
| TTACGGACTCGCATTCGAGT+TGG | - | chr4.1:2523995-2524014 | MS.gene049140:CDS | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr4.1:2522461-2522480 | None:intergenic | 50.0% |
| !! | AGTTGGTGATGCTGCACCAA+TGG | - | chr4.1:2524012-2524031 | MS.gene049140:CDS | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr4.1:2522310-2522329 | None:intergenic | 50.0% |
| AACCTAGAAACGCCCACCTG+TGG | - | chr4.1:2522225-2522244 | MS.gene049140:intron | 55.0% | |
| AGCTCGCCTTGCAGCACATA+CGG | + | chr4.1:2523797-2523816 | None:intergenic | 55.0% | |
| AGGGATCCGTATGTGCTGCA+AGG | - | chr4.1:2523788-2523807 | MS.gene049140:intron | 55.0% | |
| ATCCACAGGTGGGCGTTTCT+AGG | + | chr4.1:2522230-2522249 | None:intergenic | 55.0% | |
| CTCACCGGATATCCATGCTC+AGG | - | chr4.1:2521526-2521545 | MS.gene049140:CDS | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+GGG | + | chr4.1:2522304-2522323 | None:intergenic | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | + | chr4.1:2522305-2522324 | None:intergenic | 55.0% | |
| CCTCACCAACTGCGAGACCA+TGG | + | chr4.1:2521647-2521666 | None:intergenic | 60.0% | |
| GAGTTTGGAGGGGAGGGAAG+GGG | + | chr4.1:2522298-2522317 | None:intergenic | 60.0% | |
| GGAGTTTGGAGGGGAGGGAA+GGG | + | chr4.1:2522299-2522318 | None:intergenic | 60.0% | |
| ! | CCATGGTCTCGCAGTTGGTG+AGG | - | chr4.1:2521644-2521663 | MS.gene049140:intron | 60.0% |
| ! | CGAGCTGCTAGTTTCGTGCG+AGG | - | chr4.1:2523811-2523830 | MS.gene049140:intron | 60.0% |
| GGGAGTTTGGAGGGGAGGGA+AGG | + | chr4.1:2522300-2522319 | None:intergenic | 65.0% | |
| TTGGAGGGGAGGGAAGGGGA+GGG | + | chr4.1:2522294-2522313 | None:intergenic | 65.0% | |
| TTTGGAGGGGAGGGAAGGGG+AGG | + | chr4.1:2522295-2522314 | None:intergenic | 65.0% | |
| ! | GGGAGGGAAGGGGAGGGTTT+TGG | + | chr4.1:2522288-2522307 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 2521492 | 2524044 | 2521492 | ID=MS.gene049140 |
| chr4.1 | mRNA | 2521492 | 2524044 | 2521492 | ID=MS.gene049140.t1;Parent=MS.gene049140 |
| chr4.1 | exon | 2523989 | 2524044 | 2523989 | ID=MS.gene049140.t1.exon1;Parent=MS.gene049140.t1 |
| chr4.1 | CDS | 2523989 | 2524044 | 2523989 | ID=cds.MS.gene049140.t1;Parent=MS.gene049140.t1 |
| chr4.1 | exon | 2523840 | 2523894 | 2523840 | ID=MS.gene049140.t1.exon2;Parent=MS.gene049140.t1 |
| chr4.1 | CDS | 2523840 | 2523894 | 2523840 | ID=cds.MS.gene049140.t1;Parent=MS.gene049140.t1 |
| chr4.1 | exon | 2523684 | 2523734 | 2523684 | ID=MS.gene049140.t1.exon3;Parent=MS.gene049140.t1 |
| chr4.1 | CDS | 2523684 | 2523734 | 2523684 | ID=cds.MS.gene049140.t1;Parent=MS.gene049140.t1 |
| chr4.1 | exon | 2521655 | 2521746 | 2521655 | ID=MS.gene049140.t1.exon4;Parent=MS.gene049140.t1 |
| chr4.1 | CDS | 2521655 | 2521746 | 2521655 | ID=cds.MS.gene049140.t1;Parent=MS.gene049140.t1 |
| chr4.1 | exon | 2521492 | 2521569 | 2521492 | ID=MS.gene049140.t1.exon5;Parent=MS.gene049140.t1 |
| chr4.1 | CDS | 2521492 | 2521569 | 2521492 | ID=cds.MS.gene049140.t1;Parent=MS.gene049140.t1 |
| Gene Sequence |
| Protein sequence |
