Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21146.t1 | XP_003611263.2 | 97.7 | 303 | 7 | 0 | 1 | 303 | 1 | 303 | 2.20E-164 | 588.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21146.t1 | A2AIL4 | 37.8 | 288 | 165 | 5 | 16 | 303 | 60 | 333 | 2.7e-46 | 187.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21146.t1 | G7KG93 | 97.7 | 303 | 7 | 0 | 1 | 303 | 1 | 303 | 1.6e-164 | 588.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04991 | MS.gene21146 | 0.800081 | 1.70E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21146.t1 | MTR_5g012060 | 97.690 | 303 | 7 | 0 | 1 | 303 | 1 | 303 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21146.t1 | AT1G62730 | 72.459 | 305 | 81 | 2 | 1 | 303 | 1 | 304 | 4.82e-159 | 446 |
| MS.gene21146.t1 | AT1G62730 | 65.574 | 305 | 74 | 3 | 1 | 303 | 1 | 276 | 4.71e-137 | 389 |
Find 96 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAATTCTTCCATAGTTTC+TGG | 0.164945 | 5.1:-5431617 | None:intergenic |
| CAACCATGACTTACTAATTT+TGG | 0.169811 | 5.1:-5431540 | None:intergenic |
| TGGATGTTCAATTAATTTAT+TGG | 0.196351 | 5.1:-5431483 | None:intergenic |
| CATGATAAGGCAGCGATTTA+AGG | 0.214236 | 5.1:-5431763 | None:intergenic |
| CTTACAAAAGGCACGGAAAT+TGG | 0.230251 | 5.1:+5431940 | MS.gene21146:CDS |
| ATTGGCAAACAATTTGTCTA+TGG | 0.294301 | 5.1:-5431465 | None:intergenic |
| TCCAGAAACTATGGAAGAAT+TGG | 0.324623 | 5.1:+5431616 | MS.gene21146:CDS |
| AAGGCTTGCACGAGGGGTGC+TGG | 0.344303 | 5.1:+5432066 | MS.gene21146:CDS |
| CTCTTCTTGCATCGTCGATC+CGG | 0.348391 | 5.1:-5431580 | None:intergenic |
| CCTGCCAGCTGTGCCTGCTC+AGG | 0.364956 | 5.1:+5431997 | MS.gene21146:CDS |
| TTTAGCTGTTTCAACATTCA+AGG | 0.375145 | 5.1:-5431381 | None:intergenic |
| GGCACAGCTGGCAGGAGCAC+TGG | 0.386005 | 5.1:-5431989 | None:intergenic |
| TTCAACTCAAGTGGACTTCA+TGG | 0.391784 | 5.1:+5432113 | MS.gene21146:CDS |
| TGTGCCTGCTCAGGTTCTCT+TGG | 0.392759 | 5.1:+5432006 | MS.gene21146:CDS |
| CATAGTAGATACCGTGTTCT+CGG | 0.411266 | 5.1:-5431648 | None:intergenic |
| TTTAACGATTAGCCCATGTT+TGG | 0.415198 | 5.1:-5431831 | None:intergenic |
| AGCACCCCTCGTGCAAGCCT+TGG | 0.419292 | 5.1:-5432064 | None:intergenic |
| GATCATGCAGCCTCACATAT+TGG | 0.419523 | 5.1:+5431716 | MS.gene21146:CDS |
| ACATGGGCTAATCGTTAAAC+AGG | 0.424852 | 5.1:+5431835 | MS.gene21146:CDS |
| AAGGCGCATAAGGCCAATCC+TGG | 0.426108 | 5.1:-5431426 | None:intergenic |
| AATGCAGCTTTCCGCATAGA+TGG | 0.432684 | 5.1:-5431347 | None:intergenic |
| CACCGACATTCCAGAAACTA+TGG | 0.432903 | 5.1:+5431607 | MS.gene21146:CDS |
| TGCTGGGAATACCACCTTTG+TGG | 0.435864 | 5.1:+5432083 | MS.gene21146:CDS |
| CCTGAGCAGGCACAGCTGGC+AGG | 0.442970 | 5.1:-5431997 | None:intergenic |
| AGAACCTGAGCAGGCACAGC+TGG | 0.443395 | 5.1:-5432001 | None:intergenic |
| TGTTTGGATGCTATTGCCCT+TGG | 0.447361 | 5.1:-5431815 | None:intergenic |
| TCGCACTTGTTGTACGCAAT+GGG | 0.447959 | 5.1:-5431282 | None:intergenic |
| GTTCTGCATCTAGTAACTTA+AGG | 0.460780 | 5.1:+5431249 | MS.gene21146:CDS |
| CAAAAGGCACGGAAATTGGC+TGG | 0.465990 | 5.1:+5431944 | MS.gene21146:CDS |
| TCTTCTTGCATCGTCGATCC+GGG | 0.467160 | 5.1:-5431579 | None:intergenic |
| TCTCTTGGATTCCCTACGCC+GGG | 0.469407 | 5.1:+5432021 | MS.gene21146:CDS |
| GCCACCACACAAGGCGCATA+AGG | 0.473025 | 5.1:-5431436 | None:intergenic |
| TCTCTGCAATCACACTTGAC+AGG | 0.474712 | 5.1:-5431517 | None:intergenic |
| AGGCTTGCACGAGGGGTGCT+GGG | 0.476721 | 5.1:+5432067 | MS.gene21146:CDS |
| CTTGACAGGGCCAGCGCTGT+TGG | 0.479492 | 5.1:-5431503 | None:intergenic |
| ATCAAATTGCACCCGGCGTA+GGG | 0.494435 | 5.1:-5432032 | None:intergenic |
| GTTGCTTCAGATCCCAGGAT+TGG | 0.495782 | 5.1:+5431413 | MS.gene21146:CDS |
| TTCGCACTTGTTGTACGCAA+TGG | 0.499355 | 5.1:-5431283 | None:intergenic |
| CGGTTGTGACCAGCATGATA+AGG | 0.504331 | 5.1:-5431776 | None:intergenic |
| TTCTCTTGGATTCCCTACGC+CGG | 0.506279 | 5.1:+5432020 | MS.gene21146:CDS |
| TGGATGTTGCTTCAGATCCC+AGG | 0.510117 | 5.1:+5431408 | MS.gene21146:CDS |
| TTCCATAGTTTCTGGAATGT+CGG | 0.513075 | 5.1:-5431609 | None:intergenic |
| CGCAAGGATTTAATGAGTGG+TGG | 0.516421 | 5.1:+5431227 | None:intergenic |
| GGAAGGTCAAGGAGAGAGAT+GGG | 0.518846 | 5.1:+5431856 | MS.gene21146:CDS |
| AAATCGCTGCCTTATCATGC+TGG | 0.522737 | 5.1:+5431767 | MS.gene21146:CDS |
| TGATCCAAGGCTTGCACGAG+GGG | 0.526320 | 5.1:+5432060 | MS.gene21146:CDS |
| AGCCAATGCACACTTACAAA+AGG | 0.527197 | 5.1:+5431928 | MS.gene21146:CDS |
| AGGAAGGTCAAGGAGAGAGA+TGG | 0.527843 | 5.1:+5431855 | MS.gene21146:CDS |
| TATGCGCCTTGTGTGGTGGC+AGG | 0.528538 | 5.1:+5431439 | MS.gene21146:CDS |
| TGGCTTCCTGCCACCACACA+AGG | 0.536207 | 5.1:-5431445 | None:intergenic |
| CATCAAATTGCACCCGGCGT+AGG | 0.548272 | 5.1:-5432033 | None:intergenic |
| GGCTGGGAGTGTGCCTGCTG+AGG | 0.550043 | 5.1:+5431961 | MS.gene21146:CDS |
| AGGGCAATAGCATCCAAACA+TGG | 0.560245 | 5.1:+5431818 | MS.gene21146:CDS |
| AGCACTGGAATAGCCTCAGC+AGG | 0.562374 | 5.1:-5431974 | None:intergenic |
| TGAAACGATCTGTTGAAGCC+CGG | 0.564950 | 5.1:+5431561 | MS.gene21146:CDS |
| GAATCCAAGAGAACCTGAGC+AGG | 0.565134 | 5.1:-5432010 | None:intergenic |
| AATTTGATGTGTTTGATCCA+AGG | 0.570713 | 5.1:+5432047 | MS.gene21146:CDS |
| GTGTGAGGCAGTTTATGAAA+TGG | 0.571413 | 5.1:+5431898 | MS.gene21146:CDS |
| CTCTGCAATCACACTTGACA+GGG | 0.573273 | 5.1:-5431516 | None:intergenic |
| AGACCAAAATTAGTAAGTCA+TGG | 0.574427 | 5.1:+5431537 | MS.gene21146:CDS |
| AGGTCAAGGAGAGAGATGGG+TGG | 0.579175 | 5.1:+5431859 | MS.gene21146:CDS |
| CTGTTTCAACATTCAAGGCA+CGG | 0.582336 | 5.1:-5431376 | None:intergenic |
| AATTGAACATCCAACAGCGC+TGG | 0.586583 | 5.1:+5431493 | MS.gene21146:CDS |
| GCCTTATGCGCCTTGTGTGG+TGG | 0.587629 | 5.1:+5431435 | MS.gene21146:CDS |
| ATCGTTAAACAGGAAGGTCA+AGG | 0.590180 | 5.1:+5431845 | MS.gene21146:CDS |
| TAACGCAAGGATTTAATGAG+TGG | 0.593914 | 5.1:+5431224 | None:intergenic |
| AAGTCCACTTGAGTTGAAGC+TGG | 0.593973 | 5.1:-5432108 | None:intergenic |
| TCAAGTGGACTTCATGGAGA+AGG | 0.595439 | 5.1:+5432119 | MS.gene21146:CDS |
| TTCTCGCGAGGGTCTGTGTG+AGG | 0.600535 | 5.1:+5431883 | MS.gene21146:CDS |
| AAAAGGCACGGAAATTGGCT+GGG | 0.603375 | 5.1:+5431945 | MS.gene21146:CDS |
| TCACATATTGGCAAGGCTAG+TGG | 0.604755 | 5.1:+5431728 | MS.gene21146:CDS |
| CAAACACATCAAATTGCACC+CGG | 0.606483 | 5.1:-5432039 | None:intergenic |
| GGTACCAGCTTCAACTCAAG+TGG | 0.609461 | 5.1:+5432104 | MS.gene21146:CDS |
| TTTGATCCAAGGCTTGCACG+AGG | 0.609726 | 5.1:+5432058 | MS.gene21146:CDS |
| CATAGTTTCTGGAATGTCGG+TGG | 0.610747 | 5.1:-5431606 | None:intergenic |
| AGGCGCATAAGGCCAATCCT+GGG | 0.619021 | 5.1:-5431425 | None:intergenic |
| TGCAGCCTCACATATTGGCA+AGG | 0.620209 | 5.1:+5431721 | MS.gene21146:CDS |
| AGATGGGTGGATTCTCGCGA+GGG | 0.621395 | 5.1:+5431872 | MS.gene21146:CDS |
| TTGTACTTGACACTTCAAGC+TGG | 0.625478 | 5.1:+5431671 | MS.gene21146:CDS |
| TTGATCCAAGGCTTGCACGA+GGG | 0.629176 | 5.1:+5432059 | MS.gene21146:CDS |
| TACTTGACACTTCAAGCTGG+CGG | 0.631640 | 5.1:+5431674 | MS.gene21146:CDS |
| GGGCAATAGCATCCAAACAT+GGG | 0.631843 | 5.1:+5431819 | MS.gene21146:CDS |
| ATGCACACTTACAAAAGGCA+CGG | 0.641522 | 5.1:+5431933 | MS.gene21146:CDS |
| TGTTGAAACAGCTAAAGCGA+TGG | 0.649208 | 5.1:+5431388 | MS.gene21146:CDS |
| GATCGACGATGCAAGAAGAG+AGG | 0.649326 | 5.1:+5431583 | MS.gene21146:CDS |
| TAGATGGAGGTAATTCGAGA+AGG | 0.649396 | 5.1:-5431331 | None:intergenic |
| GGGCTAATCGTTAAACAGGA+AGG | 0.649412 | 5.1:+5431839 | MS.gene21146:CDS |
| GGAGAAATATGCCGAGAACA+CGG | 0.651307 | 5.1:+5431637 | MS.gene21146:CDS |
| CGAGAAGGCAGAGATAGTGA+TGG | 0.655909 | 5.1:-5431316 | None:intergenic |
| GAGATGGGTGGATTCTCGCG+AGG | 0.657859 | 5.1:+5431871 | MS.gene21146:CDS |
| GCAGCTTTCCGCATAGATGG+AGG | 0.659881 | 5.1:-5431344 | None:intergenic |
| TTGGCCTTATGCGCCTTGTG+TGG | 0.661315 | 5.1:+5431432 | MS.gene21146:CDS |
| ACTAGCCTTGCCAATATGTG+AGG | 0.668625 | 5.1:-5431726 | None:intergenic |
| TGAAGCTGGTACCACAAAGG+TGG | 0.671108 | 5.1:-5432094 | None:intergenic |
| AGTTGAAGCTGGTACCACAA+AGG | 0.678191 | 5.1:-5432097 | None:intergenic |
| TCGAATTACCTCCATCTATG+CGG | 0.683768 | 5.1:+5431336 | MS.gene21146:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGGATGTTCAATTAATTTAT+TGG | - | chr5.1:5431486-5431505 | None:intergenic | 20.0% |
| ! | TTGGAATGTAAGAAAAATGT+CGG | - | chr5.1:5431799-5431818 | None:intergenic | 25.0% |
| !! | ACATTTTTCTTACATTCCAA+GGG | + | chr5.1:5431799-5431818 | MS.gene21146:CDS | 25.0% |
| AATTTGATGTGTTTGATCCA+AGG | + | chr5.1:5432047-5432066 | MS.gene21146:CDS | 30.0% | |
| AGACCAAAATTAGTAAGTCA+TGG | + | chr5.1:5431537-5431556 | MS.gene21146:CDS | 30.0% | |
| ATTGGCAAACAATTTGTCTA+TGG | - | chr5.1:5431468-5431487 | None:intergenic | 30.0% | |
| ! | CAACCATGACTTACTAATTT+TGG | - | chr5.1:5431543-5431562 | None:intergenic | 30.0% |
| ! | GACATTTTTCTTACATTCCA+AGG | + | chr5.1:5431798-5431817 | MS.gene21146:CDS | 30.0% |
| ! | TTTAGCTGTTTCAACATTCA+AGG | - | chr5.1:5431384-5431403 | None:intergenic | 30.0% |
| GTTCTGCATCTAGTAACTTA+AGG | + | chr5.1:5431249-5431268 | MS.gene21146:CDS | 35.0% | |
| TCCAATTCTTCCATAGTTTC+TGG | - | chr5.1:5431620-5431639 | None:intergenic | 35.0% | |
| TCCAGAAACTATGGAAGAAT+TGG | + | chr5.1:5431616-5431635 | MS.gene21146:CDS | 35.0% | |
| ! | TTTAACGATTAGCCCATGTT+TGG | - | chr5.1:5431834-5431853 | None:intergenic | 35.0% |
| !! | TTCCATAGTTTCTGGAATGT+CGG | - | chr5.1:5431612-5431631 | None:intergenic | 35.0% |
| AGCCAATGCACACTTACAAA+AGG | + | chr5.1:5431928-5431947 | MS.gene21146:CDS | 40.0% | |
| ATCGTTAAACAGGAAGGTCA+AGG | + | chr5.1:5431845-5431864 | MS.gene21146:CDS | 40.0% | |
| ATGCACACTTACAAAAGGCA+CGG | + | chr5.1:5431933-5431952 | MS.gene21146:CDS | 40.0% | |
| CAAACACATCAAATTGCACC+CGG | - | chr5.1:5432042-5432061 | None:intergenic | 40.0% | |
| CATAGTAGATACCGTGTTCT+CGG | - | chr5.1:5431651-5431670 | None:intergenic | 40.0% | |
| CATGATAAGGCAGCGATTTA+AGG | - | chr5.1:5431766-5431785 | None:intergenic | 40.0% | |
| CTGTTTCAACATTCAAGGCA+CGG | - | chr5.1:5431379-5431398 | None:intergenic | 40.0% | |
| GTGTGAGGCAGTTTATGAAA+TGG | + | chr5.1:5431898-5431917 | MS.gene21146:CDS | 40.0% | |
| TAGATGGAGGTAATTCGAGA+AGG | - | chr5.1:5431334-5431353 | None:intergenic | 40.0% | |
| TCGAATTACCTCCATCTATG+CGG | + | chr5.1:5431336-5431355 | MS.gene21146:CDS | 40.0% | |
| TGTTGAAACAGCTAAAGCGA+TGG | + | chr5.1:5431388-5431407 | MS.gene21146:CDS | 40.0% | |
| TTGTACTTGACACTTCAAGC+TGG | + | chr5.1:5431671-5431690 | MS.gene21146:CDS | 40.0% | |
| ! | ACATGGGCTAATCGTTAAAC+AGG | + | chr5.1:5431835-5431854 | MS.gene21146:CDS | 40.0% |
| ! | CTTACAAAAGGCACGGAAAT+TGG | + | chr5.1:5431940-5431959 | MS.gene21146:CDS | 40.0% |
| ! | TGCCTTTTGTAAGTGTGCAT+TGG | - | chr5.1:5431933-5431952 | None:intergenic | 40.0% |
| ! | TTCAACTCAAGTGGACTTCA+TGG | + | chr5.1:5432113-5432132 | MS.gene21146:CDS | 40.0% |
| AAATCGCTGCCTTATCATGC+TGG | + | chr5.1:5431767-5431786 | MS.gene21146:CDS | 45.0% | |
| AATGCAGCTTTCCGCATAGA+TGG | - | chr5.1:5431350-5431369 | None:intergenic | 45.0% | |
| AATTGAACATCCAACAGCGC+TGG | + | chr5.1:5431493-5431512 | MS.gene21146:CDS | 45.0% | |
| AGGGCAATAGCATCCAAACA+TGG | + | chr5.1:5431818-5431837 | MS.gene21146:CDS | 45.0% | |
| AGTTGAAGCTGGTACCACAA+AGG | - | chr5.1:5432100-5432119 | None:intergenic | 45.0% | |
| CACCGACATTCCAGAAACTA+TGG | + | chr5.1:5431607-5431626 | MS.gene21146:CDS | 45.0% | |
| CTCTGCAATCACACTTGACA+GGG | - | chr5.1:5431519-5431538 | None:intergenic | 45.0% | |
| GATCATGCAGCCTCACATAT+TGG | + | chr5.1:5431716-5431735 | MS.gene21146:CDS | 45.0% | |
| GGAGAAATATGCCGAGAACA+CGG | + | chr5.1:5431637-5431656 | MS.gene21146:CDS | 45.0% | |
| GGGCAATAGCATCCAAACAT+GGG | + | chr5.1:5431819-5431838 | MS.gene21146:CDS | 45.0% | |
| GGGCTAATCGTTAAACAGGA+AGG | + | chr5.1:5431839-5431858 | MS.gene21146:CDS | 45.0% | |
| TACTTGACACTTCAAGCTGG+CGG | + | chr5.1:5431674-5431693 | MS.gene21146:CDS | 45.0% | |
| TCACATATTGGCAAGGCTAG+TGG | + | chr5.1:5431728-5431747 | MS.gene21146:CDS | 45.0% | |
| TCTCTGCAATCACACTTGAC+AGG | - | chr5.1:5431520-5431539 | None:intergenic | 45.0% | |
| TGAAACGATCTGTTGAAGCC+CGG | + | chr5.1:5431561-5431580 | MS.gene21146:CDS | 45.0% | |
| TGTTTGGATGCTATTGCCCT+TGG | - | chr5.1:5431818-5431837 | None:intergenic | 45.0% | |
| ! | AAAAGGCACGGAAATTGGCT+GGG | + | chr5.1:5431945-5431964 | MS.gene21146:CDS | 45.0% |
| ! | TCAAGTGGACTTCATGGAGA+AGG | + | chr5.1:5432119-5432138 | MS.gene21146:CDS | 45.0% |
| !! | AAGTCCACTTGAGTTGAAGC+TGG | - | chr5.1:5432111-5432130 | None:intergenic | 45.0% |
| !! | ACTAGCCTTGCCAATATGTG+AGG | - | chr5.1:5431729-5431748 | None:intergenic | 45.0% |
| !! | CATAGTTTCTGGAATGTCGG+TGG | - | chr5.1:5431609-5431628 | None:intergenic | 45.0% |
| !! | TCGCACTTGTTGTACGCAAT+GGG | - | chr5.1:5431285-5431304 | None:intergenic | 45.0% |
| !! | TTCGCACTTGTTGTACGCAA+TGG | - | chr5.1:5431286-5431305 | None:intergenic | 45.0% |
| AGGAAGGTCAAGGAGAGAGA+TGG | + | chr5.1:5431855-5431874 | MS.gene21146:CDS | 50.0% | |
| ATCAAATTGCACCCGGCGTA+GGG | - | chr5.1:5432035-5432054 | None:intergenic | 50.0% | |
| CGAGAAGGCAGAGATAGTGA+TGG | - | chr5.1:5431319-5431338 | None:intergenic | 50.0% | |
| CGGTTGTGACCAGCATGATA+AGG | - | chr5.1:5431779-5431798 | None:intergenic | 50.0% | |
| CTCTTCTTGCATCGTCGATC+CGG | - | chr5.1:5431583-5431602 | None:intergenic | 50.0% | |
| GAATCCAAGAGAACCTGAGC+AGG | - | chr5.1:5432013-5432032 | None:intergenic | 50.0% | |
| GATCGACGATGCAAGAAGAG+AGG | + | chr5.1:5431583-5431602 | MS.gene21146:CDS | 50.0% | |
| GGAAGGTCAAGGAGAGAGAT+GGG | + | chr5.1:5431856-5431875 | MS.gene21146:CDS | 50.0% | |
| GGTACCAGCTTCAACTCAAG+TGG | + | chr5.1:5432104-5432123 | MS.gene21146:CDS | 50.0% | |
| GTTGCTTCAGATCCCAGGAT+TGG | + | chr5.1:5431413-5431432 | MS.gene21146:CDS | 50.0% | |
| TCTTCTTGCATCGTCGATCC+GGG | - | chr5.1:5431582-5431601 | None:intergenic | 50.0% | |
| TGAAGCTGGTACCACAAAGG+TGG | - | chr5.1:5432097-5432116 | None:intergenic | 50.0% | |
| TGCAGCCTCACATATTGGCA+AGG | + | chr5.1:5431721-5431740 | MS.gene21146:CDS | 50.0% | |
| TGCTGGGAATACCACCTTTG+TGG | + | chr5.1:5432083-5432102 | MS.gene21146:CDS | 50.0% | |
| TTCTCTTGGATTCCCTACGC+CGG | + | chr5.1:5432020-5432039 | MS.gene21146:CDS | 50.0% | |
| TTGATCCAAGGCTTGCACGA+GGG | + | chr5.1:5432059-5432078 | MS.gene21146:CDS | 50.0% | |
| TTTGATCCAAGGCTTGCACG+AGG | + | chr5.1:5432058-5432077 | MS.gene21146:CDS | 50.0% | |
| ! | CAAAAGGCACGGAAATTGGC+TGG | + | chr5.1:5431944-5431963 | MS.gene21146:CDS | 50.0% |
| ! | TGGATGTTGCTTCAGATCCC+AGG | + | chr5.1:5431408-5431427 | MS.gene21146:CDS | 50.0% |
| AAGGCGCATAAGGCCAATCC+TGG | - | chr5.1:5431429-5431448 | None:intergenic | 55.0% | |
| AGGCGCATAAGGCCAATCCT+GGG | - | chr5.1:5431428-5431447 | None:intergenic | 55.0% | |
| AGGTCAAGGAGAGAGATGGG+TGG | + | chr5.1:5431859-5431878 | MS.gene21146:CDS | 55.0% | |
| CATCAAATTGCACCCGGCGT+AGG | - | chr5.1:5432036-5432055 | None:intergenic | 55.0% | |
| GCAGCTTTCCGCATAGATGG+AGG | - | chr5.1:5431347-5431366 | None:intergenic | 55.0% | |
| TCTCTTGGATTCCCTACGCC+GGG | + | chr5.1:5432021-5432040 | MS.gene21146:CDS | 55.0% | |
| TGATCCAAGGCTTGCACGAG+GGG | + | chr5.1:5432060-5432079 | MS.gene21146:CDS | 55.0% | |
| TGTGCCTGCTCAGGTTCTCT+TGG | + | chr5.1:5432006-5432025 | MS.gene21146:CDS | 55.0% | |
| ! | AGATGGGTGGATTCTCGCGA+GGG | + | chr5.1:5431872-5431891 | MS.gene21146:CDS | 55.0% |
| ! | AGCACTGGAATAGCCTCAGC+AGG | - | chr5.1:5431977-5431996 | None:intergenic | 55.0% |
| !! | TTGGCCTTATGCGCCTTGTG+TGG | + | chr5.1:5431432-5431451 | MS.gene21146:CDS | 55.0% |
| AGAACCTGAGCAGGCACAGC+TGG | - | chr5.1:5432004-5432023 | None:intergenic | 60.0% | |
| GCCACCACACAAGGCGCATA+AGG | - | chr5.1:5431439-5431458 | None:intergenic | 60.0% | |
| GCCTTATGCGCCTTGTGTGG+TGG | + | chr5.1:5431435-5431454 | MS.gene21146:CDS | 60.0% | |
| TATGCGCCTTGTGTGGTGGC+AGG | + | chr5.1:5431439-5431458 | MS.gene21146:CDS | 60.0% | |
| TGGCTTCCTGCCACCACACA+AGG | - | chr5.1:5431448-5431467 | None:intergenic | 60.0% | |
| TTCTCGCGAGGGTCTGTGTG+AGG | + | chr5.1:5431883-5431902 | MS.gene21146:CDS | 60.0% | |
| ! | GAGATGGGTGGATTCTCGCG+AGG | + | chr5.1:5431871-5431890 | MS.gene21146:CDS | 60.0% |
| AGCACCCCTCGTGCAAGCCT+TGG | - | chr5.1:5432067-5432086 | None:intergenic | 65.0% | |
| CTTGACAGGGCCAGCGCTGT+TGG | - | chr5.1:5431506-5431525 | None:intergenic | 65.0% | |
| ! | AAGGCTTGCACGAGGGGTGC+TGG | + | chr5.1:5432066-5432085 | MS.gene21146:CDS | 65.0% |
| !! | AGGCTTGCACGAGGGGTGCT+GGG | + | chr5.1:5432067-5432086 | MS.gene21146:CDS | 65.0% |
| CCTGAGCAGGCACAGCTGGC+AGG | - | chr5.1:5432000-5432019 | None:intergenic | 70.0% | |
| CCTGCCAGCTGTGCCTGCTC+AGG | + | chr5.1:5431997-5432016 | MS.gene21146:CDS | 70.0% | |
| ! | GGCACAGCTGGCAGGAGCAC+TGG | - | chr5.1:5431992-5432011 | None:intergenic | 70.0% |
| ! | GGCTGGGAGTGTGCCTGCTG+AGG | + | chr5.1:5431961-5431980 | MS.gene21146:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 5431239 | 5432150 | 5431239 | ID=MS.gene21146 |
| chr5.1 | mRNA | 5431239 | 5432150 | 5431239 | ID=MS.gene21146.t1;Parent=MS.gene21146 |
| chr5.1 | exon | 5431239 | 5432150 | 5431239 | ID=MS.gene21146.t1.exon1;Parent=MS.gene21146.t1 |
| chr5.1 | CDS | 5431239 | 5432150 | 5431239 | ID=cds.MS.gene21146.t1;Parent=MS.gene21146.t1 |
| Gene Sequence |
| Protein sequence |
