AlfalfaGEDB | MS.gene04991

M. sativa cultivar XinJiangDaYe / MS.gene04991

KEGG: K12831
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04991.t1	XP_003600696.1	99.6	262	1	0	1	262	1	262	3.90E-134	488

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04991.t1	Q15427	76.9	216	49	1	19	234	7	221	5.2e-95	349.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04991.t1	G7J8S0	99.6	262	1	0	1	262	1	262	2.8e-134	488.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04915	MS.gene04991	-0.822567	2.21E-53	-1.69E-46
MS.gene04917	MS.gene04991	-0.813231	2.84E-51	-1.69E-46
MS.gene049230	MS.gene04991	-0.824441	8.06E-54	-1.69E-46
MS.gene049378	MS.gene04991	-0.835499	1.62E-56	-1.69E-46
MS.gene04991	MS.gene050623	0.840996	6.21E-58	-1.69E-46
MS.gene04991	MS.gene051122	-0.829225	5.80E-55	-1.69E-46
MS.gene04991	MS.gene054379	-0.802161	6.40E-49	-1.69E-46
MS.gene04991	MS.gene054930	-0.807584	4.71E-50	-1.69E-46
MS.gene04991	MS.gene055060	0.825731	3.99E-54	-1.69E-46
MS.gene04991	MS.gene055701	-0.80419	2.43E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene004136	MS.gene04991	PPI
MS.gene008697	MS.gene04991	PPI
MS.gene012243	MS.gene04991	PPI
MS.gene025170	MS.gene04991	PPI
MS.gene030542	MS.gene04991	PPI
MS.gene042610	MS.gene04991	PPI
MS.gene048485	MS.gene04991	PPI
MS.gene049834	MS.gene04991	PPI
MS.gene051207	MS.gene04991	PPI
MS.gene051832	MS.gene04991	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04991.t1	MTR_3g065190	99.472	379	2	0	1	379	1	379	0.0	757
MS.gene04991.t1	MTR_4g085540	40.491	163	94	3	25	186	34	194	4.47e-32	127
MS.gene04991.t1	MTR_4g085540	32.787	183	115	5	18	195	115	294	3.12e-21	95.9
MS.gene04991.t1	MTR_4g085540	29.500	200	121	5	16	198	204	400	5.18e-21	95.1
MS.gene04991.t1	MTR_3g102040	39.535	172	101	3	25	195	24	193	1.56e-31	126
MS.gene04991.t1	MTR_3g102040	32.461	191	117	6	18	199	105	292	1.76e-18	87.4
MS.gene04991.t1	MTR_3g102040	32.275	189	108	5	27	198	205	390	7.14e-17	82.8
MS.gene04991.t1	MTR_1g019150	34.071	226	133	6	25	247	32	244	1.82e-31	126
MS.gene04991.t1	MTR_1g019150	30.500	200	126	6	18	207	113	309	1.33e-20	94.0
MS.gene04991.t1	MTR_1g019150	31.579	190	109	5	27	198	213	399	8.51e-19	88.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04991.t1	AT2G18510	87.500	256	24	2	1	256	1	248	6.97e-162	458
MS.gene04991.t1	AT4G34110	43.353	173	95	3	15	186	26	196	2.36e-35	137
MS.gene04991.t1	AT4G34110	29.293	198	120	5	18	198	208	402	1.42e-18	87.8
MS.gene04991.t1	AT4G34110	28.962	183	122	5	18	195	117	296	4.16e-18	86.7
MS.gene04991.t1	AT1G49760	41.111	180	96	6	25	198	45	220	2.91e-34	134
MS.gene04991.t1	AT1G49760	31.313	198	116	5	18	198	217	411	3.49e-21	95.9
MS.gene04991.t1	AT1G49760	41.111	180	96	6	25	198	45	220	2.91e-34	134
MS.gene04991.t1	AT1G49760	31.313	198	116	5	18	198	217	411	3.49e-21	95.9
MS.gene04991.t1	AT1G54080	34.518	197	119	5	26	218	64	254	7.27e-34	130
MS.gene04991.t1	AT1G54080	26.500	200	105	5	28	191	151	344	4.24e-16	79.7

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Find 139 sgRNAs with CRISPR-Local

Find 431 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAATTCGTGTAAATA+AGG	0.327127	3.3:-58738030	MS.gene04991:intron
AAGGCTGGGGCTTGTGGAGG+TGG	0.338842	3.3:+58733356	None:intergenic
AAGGTATGCAGGGACCTCCA+AGG	0.630862	3.3:-58733187	MS.gene04991:CDS
AATAACTCCTCAGAAATCTG+AGG	0.603991	3.3:+58738394	None:intergenic
AATCAGCATCTTCTTCGCTG+CGG	0.690362	3.3:+58738169	None:intergenic
AATCATGTTAAGTACTTTAA+TGG	0.175680	3.3:+58738064	None:intergenic
ACACCATTAGCGAAGGGACG+AGG	0.595904	3.3:+58733410	None:intergenic
ACCACCTCCACAAGGTATGC+AGG	0.469991	3.3:-58733198	MS.gene04991:CDS
ACCATTAGCCTGAGGAGCAT+TGG	0.438618	3.3:+58733454	None:intergenic
ACCGCCACCACCTCAGCAAC+AGG	0.320888	3.3:-58733114	MS.gene04991:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAGTGGCAAGAAAG+GGG	+	chr3.3:58737890-58737909	None:intergenic	30.0%
AAAATTAACTCCACTCAAAG+GGG	+	chr3.3:58733679-58733698	None:intergenic	30.0%
AAAATTTAACCCTCAATGGA+TGG	+	chr3.3:58737037-58737056	None:intergenic	30.0%
AAATAAATATTAGCGGTGAG+TGG	+	chr3.3:58736109-58736128	None:intergenic	30.0%
AAATATACAACAGAATGCAG+TGG	+	chr3.3:58733705-58733724	None:intergenic	30.0%
AATAAATATTAGCGGTGAGT+GGG	+	chr3.3:58736108-58736127	None:intergenic	30.0%
AATTATAGATGTGTTACCCA+AGG	+	chr3.3:58736792-58736811	None:intergenic	30.0%
ACAAAATTAACTCCACTCAA+AGG	+	chr3.3:58733681-58733700	None:intergenic	30.0%
ACTAATCAACATCAAGGTTA+TGG	-	chr3.3:58733317-58733336	MS.gene04991:CDS	30.0%
ACTTAACCTAAACTAACTTG+TGG	+	chr3.3:58736847-58736866	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	58733028	58738515	58733028	ID=MS.gene04991
chr3.3	mRNA	58733028	58738515	58733028	ID=MS.gene04991.t1;Parent=MS.gene04991
chr3.3	exon	58738362	58738515	58738362	ID=MS.gene04991.t1.exon1;Parent=MS.gene04991.t1
chr3.3	CDS	58738362	58738515	58738362	ID=cds.MS.gene04991.t1;Parent=MS.gene04991.t1
chr3.3	exon	58738167	58738255	58738167	ID=MS.gene04991.t1.exon2;Parent=MS.gene04991.t1
chr3.3	CDS	58738167	58738255	58738167	ID=cds.MS.gene04991.t1;Parent=MS.gene04991.t1
chr3.3	exon	58738031	58738087	58738031	ID=MS.gene04991.t1.exon3;Parent=MS.gene04991.t1
chr3.3	CDS	58738031	58738087	58738031	ID=cds.MS.gene04991.t1;Parent=MS.gene04991.t1
chr3.3	exon	58737056	58737118	58737056	ID=MS.gene04991.t1.exon4;Parent=MS.gene04991.t1
chr3.3	CDS	58737056	58737118	58737056	ID=cds.MS.gene04991.t1;Parent=MS.gene04991.t1
chr3.3	exon	58736887	58736952	58736887	ID=MS.gene04991.t1.exon5;Parent=MS.gene04991.t1
chr3.3	CDS	58736887	58736952	58736887	ID=cds.MS.gene04991.t1;Parent=MS.gene04991.t1
chr3.3	exon	58734350	58734436	58734350	ID=MS.gene04991.t1.exon6;Parent=MS.gene04991.t1
chr3.3	CDS	58734350	58734436	58734350	ID=cds.MS.gene04991.t1;Parent=MS.gene04991.t1
chr3.3	exon	58733662	58733755	58733662	ID=MS.gene04991.t1.exon7;Parent=MS.gene04991.t1
chr3.3	CDS	58733662	58733755	58733662	ID=cds.MS.gene04991.t1;Parent=MS.gene04991.t1
chr3.3	exon	58733028	58733557	58733028	ID=MS.gene04991.t1.exon8;Parent=MS.gene04991.t1
chr3.3	CDS	58733028	58733557	58733028	ID=cds.MS.gene04991.t1;Parent=MS.gene04991.t1

Gene Sequence

>MS.gene04991

ATGACGACTCGAATTGCGCCGGGTGTTGGTGCGAATCTGCTCGGGCAACATTCGGCGGAGAGGAACCAAGATGCCACTGCTTACGTCGGTAATCTCGACCCTCAGATTTCTGAGGAGTTATTGTGGGAGCTTTTTGTTCAAGCTGGTCCAGTAGGTACTATCACTCTCTCCCTTTCTCTCTTATTCATTTTAGTTTAGGGTAATTCAATTCAATTCAATACATTGAAATTTAACTTCTTAACTTATTGCTTTTGATTCAGTTAATGTGTATGTTCCAAAGGATAGAGTCACTAATCAACATCAAGGTTATGGATTTGTTGAATTCCGCAGCGAAGAAGATGCTGATTATGTATGTTTTCTTCATTCCTTGCTCCGCTTATTATTTGCTACCAAATTAACATAAAACCTAATTGCTTGTTTTGTTGCAGGCCATTAAAGTACTTAACATGATTAAACTTTATGGAAAACCAATTCGTGTAAATAAGGTACGTTTTTCCATTCCTACTTACTTGTGAGACTGTTTGAGAGAGCTTGTGGAAATAGATTATAATCTCAATAAGCACTTATATCATATGTACTTGTGCTATTAACGCTTAATTAAGATGTTTATCCAATTAGGGCCCAAAACTGTTGTTCATATTCTTGATTCCCCTTTGAGTGGAGTTAATTTTGTTCCACTGCATTCTGTTGTATATTTATGTATTGATAGAGATATAGTTTAGTCATTTTATTAAGTGCATGCATATTGTGTTTGTTATCATTTAGATAGAAGTTGTTTGATGCAGTTACAAAACTGCCGAGTTATTAGTTTTCTGCTTGGGCACTGTATTTGTATGTTATCTGAAGATTAGTCAATTTGATTCGTAACATTCATAATTTGAACCCTAGTTTTCATTTCTGTTTTTCTATCAACTCTAACAAAAGATAAATCAAAAAACAAAGTCAGTATTGAACCGATTCATGTTGGCTGAGAATCTCCATTACTATTGCTCCTTGGAGGGAATGACAGTTCTTGTATTTGGAAATAAATTTAGAGATTCTAAGATGGGATTATTTTTTTGTGTCATTTTTCTCGTACTAAAAACAAATATCTTAATACCACGTAGAATGGAATCATTGTCATTGCACACCATTTTATGTGGACCAAGTTCTAACCACCAAGTATTATACTAATATAATATTCATCTGTTATTTTCCCAATCCTTATTGTATATCATTCGAATTCGAAGATGTCGTTTTAACAATTGAGTATTTCTCATTAATCACATAGAAATTAATTTTTCATGCTTACAATATGTATACTTATCTTATATCGTTGTCTGTCACTTGGTGAAAGATATTTCAGTGTCTATGCTACTTGATTAAAGAGTATTGATCTACTATTTCTTTGGTTTTAGGCATCCCAAGATAAAAAGAGCTTGGATGTCGGGGCAAACCTTTTCATTGGCAATCTCGATCCTGTAAGTCACCAAATATGAAAGTTTTTCATTTAATTTTAAATAGATTAAAATGTGCTGGGCTTTGTGATCAGATTTAACAAGACTCTTAATGTTTCTGTTGCAGGATGTAGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCCAAGGTTTTACTCTTCTAATTTCTTTCATCTTACCTGATAGTGTTGTTTGTTTCATTTAAGTAAAAGTATCCAGCTAGCAGCAGTGGTTAATGCTTTTCATACATCACCATACACACTATTTTACATCATGGCCATTAATATTTTGTGATTGAAGATTTAGTCAGAAACCCTTGTTGGTTTTCTGAGAATACAGAATTTAAATAACATAGGCTGACTGAACCTACTCTAATAGTTGGAGGAAAAATGAAAGAATGAGGAAATTATTCCGAACCTAAAATTGGTGTGCCTGTTAGCTATCTGAGAACTAAATATCAAGACTTTGGATTATCTGGACACATTGTGAAATGGTTCACGAATGTTTGTTGCCCCAATACAATATTTACCGAGCTAGTCACATTTAATGCTAATTCTTATCACTGAATTCTCTCCAACACTTACCGTCAAAGCACAGACCGGTAGTCGATATTAATCATTCTTGGCTGGCCCGTCCAAGAAATCAAACCCTAGGTCTCAACAATGTTTTCAAGAGAATATCCACTTTATGATTTCCCTTGAAGACTTGTAAGTATAAATTAGGTAGTCTCGGGCCATTTAAGTATCAAATATATAAATTTTTTTCGGTCACTATTCTACTGGACAGTCATACTTCTTTAGTAAACCTTGTTCTCGGTCCTTACTGTTTTTTCTAAAATACAGAATTTCCATGATATAGGCTGTAGTGTTTAGCTGCTTAAATCATAGAAAATAATGAGGATATCACTCCTAACCACACGAGTTAACAATCATACAATTGGGAGGGAGATTTAACCACCACCACCGCCAGAAACGAAATATTCAATTGTTCACGTTCACAAAGACCAACTGTTAACATGGGTCACAATGGGTCTTACTGTTGGAATTATATGATATCCATTCCCATCTAAATCGCCGTTAGTTATTAGGGAGGATCCTATTGCTTATGGTGTTAGCTTCTCCCTCATGCCGTCCGTTAGTTTGTAATCATCTTTTATCAATAAAAACTAGTTTCTACAAATATCTAAGTTACGGGTTTAAGGATATATACATCTTTTCTTGAAAAAGGGAATAATTTCTTTTCTTGTTCGTTCTCATATGCCAACACTCAGGAGAGTACATTGAAATTAGGAAACCATCAATTTTTTAAGGCTACCAATAAATGTGTACCCGTTTATATTGAATTGGAGTTTGCTCTTGGGAAATGATAGAGACCTGATTATGAAGGATAAGGGAAAGGGTTATTATGTAATAAATAGTATTAGTGAGGTGTTAAGTAATTAGTAGGGTGTCTAAGTAATAGAAACATCTTTATTTTGTTGTTAATAGTGGCTATTGTCCTTGCAACCTTACCAACCTTCCTTGTAGTTTAGATAATTTTGTATTAAAGAAGGATGCCATCTTATGTCAAGATCCATCAGTTAATTTAAATTCATTTCCCCACTCACCGCTAATATTTATTTTTCCAACAACAATGAGACTATACCTCATTCAGAAACCAAACTGGAAAAGTAATTTTTAGCTTAGCTCTTACTTCATAGTAGCTAACAAATATGGAATTTCAATCGTCTGAATTGGTTGCAATAGTCATTTTGGAAACTGATTTCCATTACCTTGTGTTGGCAGTTTTCTCGTTAAGACGTGACATCATTAACCTTTCCTCATTAATTAATTGTTAAAAATTTTCAAATCAGTACCATATATGATACTATATCACATTAGATATAATTAGTGTGCCTACAAATAATGATTAAATATTTACTGAGCAATTTTCCCAAATTTGTAAAGTTTGAAGTAAGGTTTCACGGAAATTAAAATTTTAAACTTCATCAATCGGGTCTCTATCTGCCATGGAAGCTGAGGCCAGTGCCACAATTTCCCTCTTCATTGGGGAAATAACGCCCCCAAAGTAGCCAACAATCCGGATACACTTAGGGATTACAATCAATTTGCGATATTTATAGCTAATTACATTAAAAGTTACTTACCACTGATGTTTTCTCTACATGTTTGTTTGAAAAGGTTCAGTCTAGTATCAAGCGGATGACTACATTTTGAGTACTTTTCCACATTTTTAGGCTTTATATGCTCTAATTATTTGTAGTATGACAAAATATACGTATCCTTGGGTAACACATCTATAATTATCTTCCCCATTAAAAAACACCTGAGACAGGTCCACAAGTTAGTTTAGGTTAAGTACTTTATCTGATGGATGGGTTATACTATGTTGGACGGTGCACTTTCAATTTTAATTGTATTTATGTTCGTACTCTTAAATTATCCCATTTATGTTCATGTATATGTGTAAATTGCTACGAGTTCTATCTCGTATTTATGTTCATACTCCTTCAGTTGTATTAACCCTCCATCCATTGAGGGTTAAATTTTACGCGTCAAAATTTAGCTTATGATCTGATGTTCAAGGCATTTCACTGCAGATCATGAGAGATCCTGACACGGGGAATTCCCGAGGCTTTGGCTTCATTAGCTACGATTCATTTGAGGCATCTGATTCAGCTATTGAGGTATGACTTGTGTTTGTGTTTGAATCATATATAGAAATGCGTGAGATCAAACTTTCATTCTTTTGTTATTCGGCATTCATGGATTACACATTGAAGCTTACTCATAGGAGTATATAACACTTGATAACAAACAAAATAGATGGATGGATAGGTTACCTTGTATCTACTATCTAATCATAGACTCTTTCGGGCTGTAAGACCCTGTATTAACATAGTAAAACATTTAAAATTATTTCGGTACCCTTCAAGTTTTATATTTGACTTCATTTCGAGTGTTTCATGATTCTATGGCATCATTTGATCAATGACAACTTTCTTATATTTCTTGTCTTCCCTAAGTCAAATGAATTCATGCTGCAAAAAAGGGATTTGAAAATTGGGAAAAATGTGGAGATTATTGTTTGTCTGACACTATGAACATCAATTAGAAAAGTAGGAGTTGAATATTTGTTCTTTTAATATTCCATATTAGATGTAAGGAGTAGATAAAATCAAACAGAAGCATTAAATTAGGGAATATGATGCTTAATTCATAATTAGAAGGAAGTGAATATTCCCTCGTCACTGATAATGAATTATTTCTATATTTCACAGGCAATGAATGGACAGTATCTTTGCAATCGTCAAATTACAGTGTCGTATGCTTATAAGAAAGACACTAAAGGCGAAAGGCACGGTACTCCCGCAGGTGAGCCCCTTTCTTGCCACTTTTTTTTTTTTATGGTATCAATTAAAGCCTTTCGTTGTTTCTGTACTATCTTTAGTTATCTTCTCATGTTTCCTTTGATGCAGAAAGAGTTTTGGCTGCAAGTAATCCGACGGCACAGAAGAGCAGGCCTCATACTTTATTTGCAAGTGGGCCACCATCACTTCCCAATGCTCCTCAGGCTAATGGTACCATTCCTGCTCCAGTGCCTCCTCGTCCCTTCGCTAATGGTGTCGCCCCCCCTCCTATTCATGTCATCCAAGCACCACCTCCACAAGCCCCAGCCTTTCAGCCTATGCAGATGCCACCACCTGGACAACAAGCATGGCATCAACAACAGCAAGGTCAACCAATGATGCAACAGGGAATGCCTCCTCCAATGCAACAGTTCAGGCCACCTCACTCGATGCAGATGCCGCCACCACCACCTCCACAAGGTATGCAGGGACCTCCAAGGCCTCTTCCACCGCCATCAGTAATGGCAGGCCAGCAACAAGTTTGGCGACCACCGCCACCACCTCAGCAACAGGGTGGACATCCTATGGGATATCCTCAGAACTCAATGCCGCCACCGCCACCTCCCAATCACCATGGAATGCGACCACCTTCAGGTTAA

Protein sequence

>MS.gene04991.t1

MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTIPAPVPPRPFANGVAPPPIHVIQAPPPQAPAFQPMQMPPPGQQAWHQQQQGQPMMQQGMPPPMQQFRPPHSMQMPPPPPPQGMQGPPRPLPPPSVMAGQQQVWRPPPPPQQQGGHPMGYPQNSMPPPPPPNHHGMRPPSG