Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21250.t1 | XP_003615400.1 | 93.2 | 511 | 26 | 2 | 1 | 509 | 1 | 504 | 1.20E-250 | 875.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21250.t1 | Q9FE59 | 66.9 | 492 | 156 | 4 | 15 | 505 | 21 | 506 | 2.8e-189 | 662.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21250.t1 | G7K628 | 93.2 | 511 | 26 | 2 | 1 | 509 | 1 | 504 | 8.4e-251 | 875.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050670 | MS.gene21250 | -0.801969 | 7.01E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene21250 | -0.825706 | 4.05E-54 | -1.69E-46 |
| MS.gene052011 | MS.gene21250 | 0.820772 | 5.75E-53 | -1.69E-46 |
| MS.gene052128 | MS.gene21250 | 0.812763 | 3.60E-51 | -1.69E-46 |
| MS.gene056514 | MS.gene21250 | -0.817732 | 2.83E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21250.t1 | MTR_5g067470 | 95.303 | 511 | 15 | 2 | 1 | 509 | 1 | 504 | 0.0 | 971 |
| MS.gene21250.t1 | MTR_3g110880 | 76.378 | 508 | 112 | 5 | 1 | 506 | 1 | 502 | 0.0 | 766 |
| MS.gene21250.t1 | MTR_1g096910 | 55.020 | 498 | 211 | 7 | 10 | 498 | 14 | 507 | 0.0 | 533 |
| MS.gene21250.t1 | MTR_6g033580 | 53.027 | 479 | 210 | 6 | 3 | 477 | 6 | 473 | 5.77e-173 | 497 |
| MS.gene21250.t1 | MTR_4g131920 | 53.642 | 453 | 198 | 4 | 28 | 477 | 28 | 471 | 4.84e-167 | 482 |
| MS.gene21250.t1 | MTR_6g043880 | 51.875 | 480 | 218 | 5 | 28 | 505 | 27 | 495 | 1.74e-162 | 471 |
| MS.gene21250.t1 | MTR_8g468330 | 45.065 | 537 | 229 | 7 | 26 | 499 | 54 | 587 | 1.15e-150 | 444 |
| MS.gene21250.t1 | MTR_4g131920 | 48.565 | 453 | 221 | 4 | 1 | 450 | 1 | 444 | 6.29e-148 | 432 |
| MS.gene21250.t1 | MTR_4g102110 | 28.986 | 414 | 193 | 8 | 39 | 425 | 4 | 343 | 7.73e-50 | 174 |
| MS.gene21250.t1 | MTR_4g102190 | 43.478 | 115 | 65 | 0 | 83 | 197 | 133 | 247 | 4.27e-26 | 107 |
| MS.gene21250.t1 | MTR_5g085760 | 37.681 | 69 | 43 | 0 | 83 | 151 | 1 | 69 | 2.62e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21250.t1 | AT1G09960 | 69.309 | 492 | 144 | 4 | 15 | 505 | 21 | 506 | 0.0 | 678 |
| MS.gene21250.t1 | AT1G22710 | 51.896 | 501 | 221 | 5 | 17 | 508 | 17 | 506 | 1.04e-180 | 517 |
| MS.gene21250.t1 | AT5G06170 | 52.371 | 485 | 216 | 4 | 19 | 498 | 17 | 491 | 6.96e-178 | 509 |
| MS.gene21250.t1 | AT1G66570 | 52.121 | 495 | 221 | 5 | 10 | 498 | 7 | 491 | 4.62e-176 | 504 |
| MS.gene21250.t1 | AT1G71880 | 52.277 | 505 | 230 | 5 | 8 | 506 | 6 | 505 | 4.63e-174 | 500 |
| MS.gene21250.t1 | AT2G14670 | 52.675 | 486 | 215 | 4 | 19 | 498 | 16 | 492 | 4.96e-174 | 499 |
| MS.gene21250.t1 | AT5G43610 | 52.342 | 491 | 216 | 5 | 14 | 498 | 14 | 492 | 3.34e-173 | 497 |
| MS.gene21250.t1 | AT1G71890 | 50.505 | 495 | 228 | 6 | 19 | 505 | 18 | 503 | 5.64e-172 | 495 |
| MS.gene21250.t1 | AT2G02860 | 47.037 | 540 | 221 | 9 | 19 | 498 | 46 | 580 | 1.73e-156 | 458 |
| MS.gene21250.t1 | AT1G66570 | 51.914 | 418 | 185 | 5 | 10 | 421 | 7 | 414 | 6.11e-149 | 432 |
| MS.gene21250.t1 | AT1G66570 | 52.009 | 423 | 185 | 6 | 10 | 426 | 7 | 417 | 2.36e-148 | 432 |
| MS.gene21250.t1 | AT2G02860 | 43.636 | 440 | 183 | 9 | 119 | 498 | 16 | 450 | 4.58e-108 | 330 |
Find 166 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCTATTTCTCCCTGTTTA+TGG | 0.144293 | 5.1:-52325486 | MS.gene21250:CDS |
| GTCCTTGCCGTTGTTATAAT+TGG | 0.151747 | 5.1:-52329935 | MS.gene21250:CDS |
| TCAGTATCAAAGAGCATAAA+TGG | 0.184479 | 5.1:+52325122 | None:intergenic |
| AACTCGGTATCCCTCATAAA+TGG | 0.196305 | 5.1:-52330090 | MS.gene21250:CDS |
| GGGACTCTCAAATATCTTTA+TGG | 0.224551 | 5.1:-52324934 | MS.gene21250:CDS |
| TTCGATATGCGTTGAAATTA+AGG | 0.240189 | 5.1:+52324459 | None:intergenic |
| TTGCTTAATTCAGTTGTTCT+TGG | 0.247072 | 5.1:-52325014 | MS.gene21250:CDS |
| ATAGCAATCTTTACCGTTCT+TGG | 0.247467 | 5.1:-52324810 | MS.gene21250:CDS |
| GGACCGTGGGATCAATTATT+TGG | 0.247560 | 5.1:-52322027 | MS.gene21250:CDS |
| TGGATGGGTCGGGAAATTTA+TGG | 0.270994 | 5.1:-52325098 | MS.gene21250:CDS |
| GGAGGCCTTATTTATGATAC+TGG | 0.272965 | 5.1:-52325062 | MS.gene21250:CDS |
| ATGGCTGTTGGTAACATTCT+TGG | 0.289033 | 5.1:-52325467 | MS.gene21250:CDS |
| TGATGTTGATGGTCGGGTTC+TGG | 0.318720 | 5.1:+52330243 | None:intergenic |
| CTTTCATGTGGGAATTGTTT+GGG | 0.321717 | 5.1:-52325217 | MS.gene21250:CDS |
| TAACCCCAGTATCATAAATA+AGG | 0.322142 | 5.1:+52325057 | None:intergenic |
| GCTTTCATGTGGGAATTGTT+TGG | 0.333698 | 5.1:-52325218 | MS.gene21250:CDS |
| ATTGGATATGCTGCTGATAT+TGG | 0.336311 | 5.1:-52329917 | MS.gene21250:CDS |
| AGCCATAAACAGGGAGAAAT+AGG | 0.337266 | 5.1:+52325484 | None:intergenic |
| GGGGTTGTTGGAGTGGGATT+CGG | 0.359310 | 5.1:+52330274 | None:intergenic |
| GTCGGGTTCTGGACCGGTGG+GGG | 0.363563 | 5.1:+52330254 | None:intergenic |
| GGACCACTATTGCCAGATTC+AGG | 0.364066 | 5.1:+52324318 | None:intergenic |
| TTATGCTCTTTGATACTGAT+TGG | 0.365791 | 5.1:-52325118 | MS.gene21250:CDS |
| ATGGTCGGGTTCTGGACCGG+TGG | 0.367522 | 5.1:+52330251 | None:intergenic |
| AACATTCTTGGCTATGCAAC+TGG | 0.369672 | 5.1:-52325455 | MS.gene21250:CDS |
| TTCTCCCTGTTTATGGCTGT+TGG | 0.376134 | 5.1:-52325479 | MS.gene21250:CDS |
| TGTTACCAACAGCCATAAAC+AGG | 0.381085 | 5.1:+52325474 | None:intergenic |
| GGAGAAGGGGCAGGAGAGTC+GGG | 0.382677 | 5.1:-52325254 | MS.gene21250:CDS |
| ATCAATGGGTGTCCTGAATC+TGG | 0.384386 | 5.1:-52324330 | MS.gene21250:CDS |
| TCATAAATAAGGCCTCCTTC+TGG | 0.386901 | 5.1:+52325068 | None:intergenic |
| GATCGATGCGCCAGCCGGTT+CGG | 0.396909 | 5.1:-52329998 | MS.gene21250:CDS |
| ACAGCTGCCACGGCAAAGGC+TGG | 0.399190 | 5.1:+52321991 | None:intergenic |
| GCTGTAAAGCCCAACCGAAT+TGG | 0.400189 | 5.1:+52330140 | None:intergenic |
| TAGCAATCTTTACCGTTCTT+GGG | 0.404261 | 5.1:-52324809 | MS.gene21250:CDS |
| TGCAACAGCTGCCACGGCAA+AGG | 0.405737 | 5.1:+52321987 | None:intergenic |
| TCAAGTGGGGCAGCACATAC+TGG | 0.406303 | 5.1:-52325275 | MS.gene21250:CDS |
| GCTGCCCCACTTGAACTTAG+AGG | 0.414784 | 5.1:+52325284 | None:intergenic |
| ATAAATGGGCGAGCATCATC+TGG | 0.415033 | 5.1:-52330075 | MS.gene21250:CDS |
| GATCCCACGGTCCACTTCCC+AGG | 0.415426 | 5.1:+52322037 | None:intergenic |
| TGGCTCTGTGGACCGGTCTC+CGG | 0.418697 | 5.1:-52330055 | MS.gene21250:CDS |
| TAAACAGATTGTGGTGTCCC+TGG | 0.419155 | 5.1:-52322055 | MS.gene21250:intron |
| GCTCTTTGATACTGATTGGA+TGG | 0.424729 | 5.1:-52325114 | MS.gene21250:CDS |
| TGCGTTGAAATTAAGGCATA+TGG | 0.428433 | 5.1:+52324466 | None:intergenic |
| CTCGGAGGAGTTGGCGTAAG+GGG | 0.433236 | 5.1:+52330185 | None:intergenic |
| TAAGAGAAACTTACTGCCAT+TGG | 0.439735 | 5.1:+52324783 | None:intergenic |
| TTATGATACTGGGGTTAGAA+TGG | 0.440367 | 5.1:-52325051 | MS.gene21250:CDS |
| GGTCGGGTTCTGGACCGGTG+GGG | 0.440766 | 5.1:+52330253 | None:intergenic |
| AACCTCCCGTCCGGTCCAAC+CGG | 0.441375 | 5.1:-52330221 | MS.gene21250:CDS |
| GAGCCAGGAGTCCACTCAAA+AGG | 0.444099 | 5.1:+52321962 | None:intergenic |
| ATGATGCTCGCCCATTTATG+AGG | 0.445705 | 5.1:+52330079 | None:intergenic |
| TCGGGTTCTGGACCGGTGGG+GGG | 0.447374 | 5.1:+52330255 | None:intergenic |
| TGGTCGGGTTCTGGACCGGT+GGG | 0.450192 | 5.1:+52330252 | None:intergenic |
| GGACGGGAGGTTGATGTTGA+TGG | 0.455714 | 5.1:+52330232 | None:intergenic |
| GACTCGGAGGAGTTGGCGTA+AGG | 0.458682 | 5.1:+52330183 | None:intergenic |
| GGAGGTTGATGTTGATGGTC+GGG | 0.460730 | 5.1:+52330237 | None:intergenic |
| TATGATACTGGGGTTAGAAT+GGG | 0.462693 | 5.1:-52325050 | MS.gene21250:CDS |
| TGATACTGATTGGATGGGTC+GGG | 0.463012 | 5.1:-52325108 | MS.gene21250:CDS |
| TCACTTAAATGACCGACTAA+TGG | 0.470373 | 5.1:+52330019 | None:intergenic |
| CGTGGTTGAACCGGTTGGAC+CGG | 0.476180 | 5.1:+52330211 | None:intergenic |
| GTAGCAAGCGGAATCCAATT+CGG | 0.485785 | 5.1:-52330154 | MS.gene21250:CDS |
| CATCATCTGGCTCTGTGGAC+CGG | 0.487042 | 5.1:-52330062 | MS.gene21250:CDS |
| TGGAGAAGGGGCAGGAGAGT+CGG | 0.487652 | 5.1:-52325255 | MS.gene21250:CDS |
| TAAGTGATCGATGCGCCAGC+CGG | 0.488882 | 5.1:-52330003 | MS.gene21250:CDS |
| CATATCGAACCATTGGGACT+TGG | 0.490276 | 5.1:-52324445 | MS.gene21250:CDS |
| ACTCGGTATCCCTCATAAAT+GGG | 0.492148 | 5.1:-52330089 | MS.gene21250:CDS |
| TGTCCTGAATCTGGCAATAG+TGG | 0.494411 | 5.1:-52324321 | MS.gene21250:CDS |
| TTCAACGCATATCGAACCAT+TGG | 0.494722 | 5.1:-52324452 | MS.gene21250:CDS |
| ACGGTCTCCGACGACCGAAC+CGG | 0.496387 | 5.1:+52329984 | None:intergenic |
| AAGCCTAGAGTCCGCATATG+AGG | 0.496869 | 5.1:-52321910 | None:intergenic |
| TGGAGTAACATCATTGCTCA+TGG | 0.497037 | 5.1:-52324994 | MS.gene21250:CDS |
| GGGGTTAGAATGGGAGCACT+TGG | 0.498736 | 5.1:-52325041 | MS.gene21250:CDS |
| CTATGCAGAAAGCGAGGAGC+TGG | 0.501913 | 5.1:-52324966 | MS.gene21250:CDS |
| TTGATGGTCGGGTTCTGGAC+CGG | 0.502250 | 5.1:+52330248 | None:intergenic |
| ATACCTCATATGCGGACTCT+AGG | 0.503431 | 5.1:+52321907 | None:intergenic |
| GCCGCGCCGACTAAAATAAA+CGG | 0.503797 | 5.1:+52329965 | None:intergenic |
| AAGGGCTGCAACAGCTGCCA+CGG | 0.503946 | 5.1:+52321981 | None:intergenic |
| GTGCTTACAGGGTTATCAAT+GGG | 0.504656 | 5.1:-52324344 | MS.gene21250:intron |
| GCGCCAGCCGGTTCGGTCGT+CGG | 0.507329 | 5.1:-52329991 | MS.gene21250:CDS |
| GGCAGGAGAGTCGGGTAGTG+CGG | 0.507782 | 5.1:-52325246 | MS.gene21250:CDS |
| CTCTTTGATACTGATTGGAT+GGG | 0.508675 | 5.1:-52325113 | MS.gene21250:CDS |
| TTGATACTGATTGGATGGGT+CGG | 0.510660 | 5.1:-52325109 | MS.gene21250:CDS |
| AAGCGGAATCCAATTCGGTT+GGG | 0.512758 | 5.1:-52330149 | MS.gene21250:CDS |
| AAAGCTCAACCACCACCAAC+GGG | 0.513513 | 5.1:-52324849 | MS.gene21250:CDS |
| GAGGCCTTATTTATGATACT+GGG | 0.513871 | 5.1:-52325061 | MS.gene21250:CDS |
| GAATTGGATTCCGCTTGCTA+CGG | 0.515550 | 5.1:+52330156 | None:intergenic |
| GTAACTGCTCTGACATGGAT+TGG | 0.516974 | 5.1:-52325152 | MS.gene21250:CDS |
| ACTCGGAGGAGTTGGCGTAA+GGG | 0.517905 | 5.1:+52330184 | None:intergenic |
| TAATGGTTGGACGAATAAAC+CGG | 0.519411 | 5.1:+52330036 | None:intergenic |
| GGTGCTTACAGGGTTATCAA+TGG | 0.520157 | 5.1:-52324345 | MS.gene21250:intron |
| GGGTTCGTGGTTGAACCGGT+TGG | 0.520346 | 5.1:+52330206 | None:intergenic |
| ATCAACATCAACCTCCCGTC+CGG | 0.523944 | 5.1:-52330230 | MS.gene21250:CDS |
| TCAACGCATATCGAACCATT+GGG | 0.524707 | 5.1:-52324451 | MS.gene21250:CDS |
| CGGATGCGACTCGGAGGAGT+TGG | 0.525271 | 5.1:+52330176 | None:intergenic |
| GGGGCAGCACATACTGGAGA+AGG | 0.525275 | 5.1:-52325269 | MS.gene21250:CDS |
| CAAGCGGAATCCAATTCGGT+TGG | 0.525380 | 5.1:-52330150 | MS.gene21250:CDS |
| CTGCTCTGACATGGATTGGA+TGG | 0.527387 | 5.1:-52325148 | MS.gene21250:CDS |
| ATACCGAGTTGTTGAACGTA+AGG | 0.527684 | 5.1:+52330103 | None:intergenic |
| GCTGATATTGGTTACTTGAT+CGG | 0.528462 | 5.1:-52329905 | MS.gene21250:CDS |
| TCTGCGTTCTTTCTCGACGT+TGG | 0.529055 | 5.1:-52325356 | MS.gene21250:CDS |
| TACCGTTCTTGGGTTTCCAA+TGG | 0.529731 | 5.1:-52324799 | MS.gene21250:CDS |
| AGCCAGGAGTCCACTCAAAA+GGG | 0.530946 | 5.1:+52321963 | None:intergenic |
| GGGCAGCACATACTGGAGAA+GGG | 0.534873 | 5.1:-52325268 | MS.gene21250:CDS |
| CGCTTGCTACGGATGCGACT+CGG | 0.536678 | 5.1:+52330167 | None:intergenic |
| ACCTATGCGGCAAATAGCAT+TGG | 0.537882 | 5.1:-52324882 | MS.gene21250:CDS |
| CCGTGGGATCAATTATTTGG+TGG | 0.538344 | 5.1:-52322024 | MS.gene21250:CDS |
| ATCACAACGCCCGTTGGTGG+TGG | 0.539816 | 5.1:+52324840 | None:intergenic |
| CAGTATCAAAGAGCATAAAT+GGG | 0.540629 | 5.1:+52325123 | None:intergenic |
| GGGAGGTTGATGTTGATGGT+CGG | 0.541305 | 5.1:+52330236 | None:intergenic |
| GTCCCTGGGAAGTGGACCGT+GGG | 0.543243 | 5.1:-52322040 | MS.gene21250:CDS |
| TGGGATCAATTATTTGGTGG+AGG | 0.543862 | 5.1:-52322021 | MS.gene21250:CDS |
| AAACAGATTGTGGTGTCCCT+GGG | 0.547208 | 5.1:-52322054 | MS.gene21250:intron |
| GTTGAACCGGTTGGACCGGA+CGG | 0.551213 | 5.1:+52330215 | None:intergenic |
| GAACCATTGGGACTTGGCCA+AGG | 0.554326 | 5.1:-52324439 | MS.gene21250:intron |
| CAACTGGATCATACAGTGGC+TGG | 0.554996 | 5.1:-52325439 | MS.gene21250:CDS |
| TTGAACCGGTTGGACCGGAC+GGG | 0.555013 | 5.1:+52330216 | None:intergenic |
| ATTGTGGTGTCCCTGGGAAG+TGG | 0.556232 | 5.1:-52322048 | MS.gene21250:CDS |
| GCGATCACAACGCCCGTTGG+TGG | 0.557691 | 5.1:+52324837 | None:intergenic |
| ACAGACAGTACTATCCATAC+AGG | 0.560631 | 5.1:+52325173 | None:intergenic |
| TAAAGCTCAACCACCACCAA+CGG | 0.563419 | 5.1:-52324850 | MS.gene21250:CDS |
| GCCAATGCTATTTGCCGCAT+AGG | 0.563889 | 5.1:+52324881 | None:intergenic |
| GGGGAATAGCTAATAGAGCC+AGG | 0.565079 | 5.1:+52321947 | None:intergenic |
| TCTCCGACGACCGAACCGGC+TGG | 0.566996 | 5.1:+52329988 | None:intergenic |
| TGTCCCTGGGAAGTGGACCG+TGG | 0.569972 | 5.1:-52322041 | MS.gene21250:CDS |
| ACCCCTTACGTTCAACAACT+CGG | 0.572745 | 5.1:-52330106 | MS.gene21250:CDS |
| GGCAGCACATACTGGAGAAG+GGG | 0.573227 | 5.1:-52325267 | MS.gene21250:CDS |
| TCGGAGGAGTTGGCGTAAGG+GGG | 0.573508 | 5.1:+52330186 | None:intergenic |
| TTAAATGACCGACTAATGGT+TGG | 0.574743 | 5.1:+52330023 | None:intergenic |
| GCACATACTGGAGAAGGGGC+AGG | 0.577580 | 5.1:-52325263 | MS.gene21250:CDS |
| GTTGCTAATAATGTTACTCA+AGG | 0.583205 | 5.1:-52329812 | MS.gene21250:CDS |
| AACCGGTTGGACCGGACGGG+AGG | 0.583824 | 5.1:+52330219 | None:intergenic |
| ACCGAGTTGTTGAACGTAAG+GGG | 0.585817 | 5.1:+52330105 | None:intergenic |
| TCTGGCAATAGTGGTCCCGC+AGG | 0.586235 | 5.1:-52324312 | MS.gene21250:intron |
| TACCGAGTTGTTGAACGTAA+GGG | 0.586732 | 5.1:+52330104 | None:intergenic |
| GAAGTGCCTCTAAGTTCAAG+TGG | 0.587282 | 5.1:-52325290 | MS.gene21250:CDS |
| CCACCTTGGCCAAGTCCCAA+TGG | 0.587430 | 5.1:+52324436 | None:intergenic |
| TGTCTGTAACTGCTCTGACA+TGG | 0.591644 | 5.1:-52325157 | MS.gene21250:CDS |
| ATCCCACGGTCCACTTCCCA+GGG | 0.593989 | 5.1:+52322038 | None:intergenic |
| CCACCAAATAATTGATCCCA+CGG | 0.594093 | 5.1:+52322024 | None:intergenic |
| AGCATATCCAATTATAACAA+CGG | 0.597480 | 5.1:+52329928 | None:intergenic |
| TGGACGAATAAACCGGAGAC+CGG | 0.608284 | 5.1:+52330043 | None:intergenic |
| TGATGCTCGCCCATTTATGA+GGG | 0.611044 | 5.1:+52330080 | None:intergenic |
| TAACATCATTGCTCATGGAA+AGG | 0.611471 | 5.1:-52324989 | MS.gene21250:CDS |
| GCGAGCATCATCTGGCTCTG+TGG | 0.619712 | 5.1:-52330067 | MS.gene21250:CDS |
| AAGTGCCTCTAAGTTCAAGT+GGG | 0.621563 | 5.1:-52325289 | MS.gene21250:CDS |
| TGCCATTGGAAACCCAAGAA+CGG | 0.631462 | 5.1:+52324797 | None:intergenic |
| GTGCGGAAGAAGCTTTCATG+TGG | 0.631502 | 5.1:-52325229 | MS.gene21250:CDS |
| TTATTCGTCCAACCATTAGT+CGG | 0.631856 | 5.1:-52330031 | MS.gene21250:CDS |
| ATGGGTCGGGAAATTTATGG+TGG | 0.634506 | 5.1:-52325095 | MS.gene21250:CDS |
| GCTGCGATCACAACGCCCGT+TGG | 0.635197 | 5.1:+52324834 | None:intergenic |
| GCACAACTAATAGAGCAAGC+AGG | 0.640662 | 5.1:+52325389 | None:intergenic |
| TCTCGACGTTGGTTTCATTG+CGG | 0.646278 | 5.1:-52325345 | MS.gene21250:CDS |
| AAACTCTCCAGCCTTTGCCG+TGG | 0.646555 | 5.1:-52321998 | MS.gene21250:CDS |
| TCAGCGAGTAAAGCTCTACA+AGG | 0.649910 | 5.1:+52329788 | None:intergenic |
| AGGCCTTATTTATGATACTG+GGG | 0.650258 | 5.1:-52325060 | MS.gene21250:CDS |
| AGCATATGATACCTCATATG+CGG | 0.658323 | 5.1:+52321899 | None:intergenic |
| TGTTAGGCAATGATGCTCGA+AGG | 0.658533 | 5.1:-52325523 | MS.gene21250:intron |
| ATTTATGGTGGTGATCCAGA+AGG | 0.660702 | 5.1:-52325083 | MS.gene21250:CDS |
| TGCGGAAGAAGCTTTCATGT+GGG | 0.664559 | 5.1:-52325228 | MS.gene21250:CDS |
| TATGGTGGTGATCCAGAAGG+AGG | 0.664668 | 5.1:-52325080 | MS.gene21250:CDS |
| CGAGTCGCATCCGTAGCAAG+CGG | 0.668803 | 5.1:-52330166 | MS.gene21250:CDS |
| ATCCAATTATAACAACGGCA+AGG | 0.676223 | 5.1:+52329933 | None:intergenic |
| AATGTTAGTATTAACCTATG+CGG | 0.677893 | 5.1:-52324895 | MS.gene21250:CDS |
| GAAAGGCTATGCAGAAAGCG+AGG | 0.682464 | 5.1:-52324972 | MS.gene21250:CDS |
| TTGCTACGGATGCGACTCGG+AGG | 0.701214 | 5.1:+52330170 | None:intergenic |
| GTTACCAACAGCCATAAACA+GGG | 0.716551 | 5.1:+52325475 | None:intergenic |
| AGTGCCTCTAAGTTCAAGTG+GGG | 0.719331 | 5.1:-52325288 | MS.gene21250:CDS |
| TATGCAACTGGATCATACAG+TGG | 0.742045 | 5.1:-52325443 | MS.gene21250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 52321912 | 52330299 | 52321912 | ID=MS.gene21250 |
| chr5.1 | mRNA | 52321912 | 52330299 | 52321912 | ID=MS.gene21250.t1;Parent=MS.gene21250 |
| chr5.1 | exon | 52329780 | 52330299 | 52329780 | ID=MS.gene21250.t1.exon1;Parent=MS.gene21250.t1 |
| chr5.1 | CDS | 52329780 | 52330299 | 52329780 | ID=cds.MS.gene21250.t1;Parent=MS.gene21250.t1 |
| chr5.1 | exon | 52324797 | 52325539 | 52324797 | ID=MS.gene21250.t1.exon2;Parent=MS.gene21250.t1 |
| chr5.1 | CDS | 52324797 | 52325539 | 52324797 | ID=cds.MS.gene21250.t1;Parent=MS.gene21250.t1 |
| chr5.1 | exon | 52324440 | 52324503 | 52324440 | ID=MS.gene21250.t1.exon3;Parent=MS.gene21250.t1 |
| chr5.1 | CDS | 52324440 | 52324503 | 52324440 | ID=cds.MS.gene21250.t1;Parent=MS.gene21250.t1 |
| chr5.1 | exon | 52324313 | 52324356 | 52324313 | ID=MS.gene21250.t1.exon4;Parent=MS.gene21250.t1 |
| chr5.1 | CDS | 52324313 | 52324356 | 52324313 | ID=cds.MS.gene21250.t1;Parent=MS.gene21250.t1 |
| chr5.1 | exon | 52321912 | 52322070 | 52321912 | ID=MS.gene21250.t1.exon5;Parent=MS.gene21250.t1 |
| chr5.1 | CDS | 52321912 | 52322070 | 52321912 | ID=cds.MS.gene21250.t1;Parent=MS.gene21250.t1 |
| Gene Sequence |
| Protein sequence |
