Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21344.t1 | KEH43293.1 | 76.7 | 193 | 23 | 4 | 99 | 276 | 146 | 331 | 7.70E-67 | 264.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21344.t1 | Q8L7N4 | 48.4 | 188 | 62 | 3 | 99 | 278 | 26 | 186 | 1.4e-37 | 158.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21344.t1 | A0A072VPF2 | 76.7 | 193 | 23 | 4 | 99 | 276 | 146 | 331 | 5.5e-67 | 264.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057855 | MS.gene21344 | 0.807089 | 5.99E-50 | -1.69E-46 |
| MS.gene058595 | MS.gene21344 | 0.810581 | 1.07E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene21344 | 0.802473 | 5.52E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21344.t1 | MTR_1g089960 | 75.500 | 200 | 25 | 5 | 92 | 276 | 141 | 331 | 6.06e-89 | 273 |
| MS.gene21344.t1 | MTR_1g089940 | 52.459 | 183 | 71 | 4 | 101 | 277 | 30 | 202 | 6.50e-51 | 170 |
| MS.gene21344.t1 | MTR_1g089900 | 52.432 | 185 | 55 | 3 | 99 | 277 | 28 | 185 | 1.01e-50 | 170 |
| MS.gene21344.t1 | MTR_1g089900 | 52.717 | 184 | 54 | 3 | 99 | 276 | 28 | 184 | 5.11e-50 | 169 |
| MS.gene21344.t1 | MTR_7g094290 | 50.289 | 173 | 53 | 5 | 99 | 265 | 26 | 171 | 1.32e-38 | 139 |
| MS.gene21344.t1 | MTR_1g089920 | 47.500 | 200 | 77 | 5 | 97 | 278 | 26 | 215 | 1.92e-36 | 132 |
| MS.gene21344.t1 | MTR_1g089910 | 45.161 | 186 | 75 | 3 | 99 | 276 | 21 | 187 | 1.47e-34 | 127 |
| MS.gene21344.t1 | MTR_1g089910 | 44.624 | 186 | 76 | 3 | 99 | 276 | 28 | 194 | 1.73e-34 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21344.t1 | AT1G63900 | 48.404 | 188 | 62 | 3 | 99 | 278 | 26 | 186 | 1.95e-47 | 161 |
| MS.gene21344.t1 | AT1G63900 | 48.404 | 188 | 62 | 3 | 99 | 278 | 26 | 186 | 1.92e-46 | 160 |
| MS.gene21344.t1 | AT1G59560 | 37.696 | 191 | 83 | 3 | 103 | 284 | 27 | 190 | 4.68e-31 | 118 |
| MS.gene21344.t1 | AT1G59560 | 37.696 | 191 | 83 | 3 | 103 | 284 | 27 | 190 | 7.85e-31 | 118 |
| MS.gene21344.t1 | AT1G59560 | 37.696 | 191 | 83 | 3 | 103 | 284 | 27 | 190 | 1.02e-30 | 118 |
| MS.gene21344.t1 | AT1G59560 | 37.696 | 191 | 83 | 3 | 103 | 284 | 27 | 190 | 2.08e-30 | 118 |
Find 58 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTGGTTGTTTCAATTTC+TGG | 0.051832 | 1.4:-71278149 | MS.gene21344:CDS |
| CGCTAATCTTGCACTTGATT+GGG | 0.245308 | 1.4:+71278108 | None:intergenic |
| AGGTACCATGGAACCTCTTT+TGG | 0.276592 | 1.4:+71277805 | None:intergenic |
| AAAGGCACAATACTCGGTTT+TGG | 0.290039 | 1.4:-71280338 | MS.gene21344:CDS |
| CCGCTAATCTTGCACTTGAT+TGG | 0.298122 | 1.4:+71278107 | None:intergenic |
| TTTCATGGACACAACATTCT+AGG | 0.316608 | 1.4:-71277843 | MS.gene21344:CDS |
| AAATATTTCGAATGATGATT+TGG | 0.318842 | 1.4:-71280371 | MS.gene21344:CDS |
| CGGTGAAAGCATTTAACTTT+CGG | 0.325765 | 1.4:+71276787 | None:intergenic |
| GAGAATTGAACGGGTACTTC+TGG | 0.356729 | 1.4:-71277329 | MS.gene21344:CDS |
| TGTTGGACTTCTTACTTGCT+TGG | 0.366516 | 1.4:-71280458 | MS.gene21344:CDS |
| AAATCATACTTTCAGATCCT+TGG | 0.396061 | 1.4:-71277358 | MS.gene21344:intron |
| GGAACTTCCTTGAATGTTGT+TGG | 0.421189 | 1.4:-71277304 | MS.gene21344:CDS |
| CGAAGACTGTCTTAGCAGAT+TGG | 0.431462 | 1.4:-71280288 | MS.gene21344:CDS |
| GAATGATGATTTGGAGTTTG+TGG | 0.442722 | 1.4:-71280362 | MS.gene21344:CDS |
| TTGGTACAGCAGACAACGTT+GGG | 0.460046 | 1.4:-71280492 | MS.gene21344:CDS |
| TACCTCACCAACAACATTCA+AGG | 0.473263 | 1.4:+71277297 | None:intergenic |
| TGATTTGGAGTTTGTGGAAA+AGG | 0.480039 | 1.4:-71280356 | MS.gene21344:CDS |
| ACTTTCGGTGCACATGCAAA+TGG | 0.480548 | 1.4:+71276802 | None:intergenic |
| CCAATCAAGTGCAAGATTAG+CGG | 0.492223 | 1.4:-71278107 | MS.gene21344:CDS |
| TTCATGCCTTTGTGCTATGT+TGG | 0.493264 | 1.4:-71280511 | MS.gene21344:CDS |
| TGCAAGATTAGCGGTTTAAG+TGG | 0.496757 | 1.4:-71278098 | MS.gene21344:CDS |
| CATATCATCAATTCCAAAAG+AGG | 0.502120 | 1.4:-71277818 | MS.gene21344:CDS |
| GAGCTATCTCGAAGATGAAA+AGG | 0.507392 | 1.4:-71277476 | MS.gene21344:intron |
| TGGACTCAAGAGAATTGAAC+GGG | 0.529306 | 1.4:-71277338 | MS.gene21344:CDS |
| GAAGACTGTCTTAGCAGATT+GGG | 0.532775 | 1.4:-71280287 | MS.gene21344:CDS |
| TGTGGAAAAGGCACAATACT+CGG | 0.533948 | 1.4:-71280344 | MS.gene21344:CDS |
| AATTCTTAAATCTGTTACCC+GGG | 0.537858 | 1.4:-71278463 | MS.gene21344:CDS |
| GGTCCTTCAGCTGATTGACC+CGG | 0.538800 | 1.4:+71278445 | None:intergenic |
| GGAAACTATTAGCATGAAAG+AGG | 0.544378 | 1.4:-71280266 | MS.gene21344:CDS |
| ACTGATCGTGTGCATGTGGT+TGG | 0.544542 | 1.4:-71277565 | MS.gene21344:CDS |
| AAATTCTTAAATCTGTTACC+CGG | 0.547671 | 1.4:-71278464 | MS.gene21344:CDS |
| GCTAATCTTGCACTTGATTG+GGG | 0.550757 | 1.4:+71278109 | None:intergenic |
| GTTCAATTCTCTTGAGTCCA+AGG | 0.552635 | 1.4:+71277341 | None:intergenic |
| ATTGAACGGGTACTTCTGGT+TGG | 0.557874 | 1.4:-71277325 | MS.gene21344:CDS |
| AAAAGAGGTTCCATGGTACC+TGG | 0.558968 | 1.4:-71277803 | MS.gene21344:intron |
| TTCGGTGCACATGCAAATGG+TGG | 0.566104 | 1.4:+71276805 | None:intergenic |
| CAATTCCAAAAGAGGTTCCA+TGG | 0.566891 | 1.4:-71277810 | MS.gene21344:CDS |
| GTGCATGTGGTTGGAGCTCG+TGG | 0.568596 | 1.4:-71277556 | MS.gene21344:CDS |
| TTCCTTGAATGTTGTTGGTG+AGG | 0.569114 | 1.4:-71277299 | MS.gene21344:intron |
| AGTTTGTGTGTCTCTTAGCA+AGG | 0.576559 | 1.4:-71280402 | MS.gene21344:CDS |
| AAACTACACACCAGGTACCA+TGG | 0.595954 | 1.4:+71277793 | None:intergenic |
| ATTTACGTGTTTACATCACT+AGG | 0.599436 | 1.4:+71279075 | None:intergenic |
| GTCCTTCAGCTGATTGACCC+GGG | 0.602997 | 1.4:+71278446 | None:intergenic |
| AGATAGCTCGATATTTCAGA+CGG | 0.616916 | 1.4:+71277490 | None:intergenic |
| GTTGGGAAGTACACACATGT+TGG | 0.625751 | 1.4:-71280475 | MS.gene21344:CDS |
| TCTTGTTGGAAATAGTGTGT+GGG | 0.626682 | 1.4:-71276886 | MS.gene21344:intron |
| AACTATTAGCATGAAAGAGG+AGG | 0.630213 | 1.4:-71280263 | MS.gene21344:CDS |
| GTCAATCAGCTGAAGGACCT+AGG | 0.630519 | 1.4:-71278441 | MS.gene21344:intron |
| CGGGACTGATCGTGTGCATG+TGG | 0.630855 | 1.4:-71277569 | MS.gene21344:CDS |
| TCGGTGCACATGCAAATGGT+GGG | 0.635357 | 1.4:+71276806 | None:intergenic |
| AGTAGGTAATACAAAATCAG+TGG | 0.638069 | 1.4:+71277531 | None:intergenic |
| GTTGGTACAGCAGACAACGT+TGG | 0.642901 | 1.4:-71280493 | MS.gene21344:CDS |
| TTGGACTCAAGAGAATTGAA+CGG | 0.648372 | 1.4:-71277339 | MS.gene21344:CDS |
| GCCAGAAATTGAAACAACCA+AGG | 0.652327 | 1.4:+71278148 | None:intergenic |
| TACCCGGGTCAATCAGCTGA+AGG | 0.664929 | 1.4:-71278448 | MS.gene21344:CDS |
| GATAGCTCGATATTTCAGAC+GGG | 0.665377 | 1.4:+71277491 | None:intergenic |
| CCAGAAATTGAAACAACCAA+GGG | 0.676777 | 1.4:+71278149 | None:intergenic |
| GCTGTACCAACATAGCACAA+AGG | 0.743667 | 1.4:+71280505 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATTATATACAAAAAATAA+CGG | - | chr1.4:71278004-71278023 | MS.gene21344:intron | 10.0% |
| !! | TAAGTATTTATGTATTTATT+TGG | + | chr1.4:71278230-71278249 | None:intergenic | 10.0% |
| !! | TCAAAAAACAAATATTATTA+GGG | - | chr1.4:71278447-71278466 | MS.gene21344:CDS | 10.0% |
| !!! | AAATTAATTAGAACTTTTTT+AGG | - | chr1.4:71278041-71278060 | MS.gene21344:intron | 10.0% |
| !!! | AATTAATTAGAACTTTTTTA+GGG | - | chr1.4:71278042-71278061 | MS.gene21344:intron | 10.0% |
| !!! | AGTTTTTTTTTTTTTTTTTG+TGG | - | chr1.4:71278332-71278351 | MS.gene21344:intron | 10.0% |
| !!! | TAATAATATTTGTTTTTTGA+GGG | + | chr1.4:71278447-71278466 | None:intergenic | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr1.4:71279561-71279580 | None:intergenic | 100.0% |
| !! | CTCAAAAAACAAATATTATT+AGG | - | chr1.4:71278446-71278465 | MS.gene21344:CDS | 15.0% |
| !! | TAAAAAGAAAATTAGAAAAC+AGG | + | chr1.4:71279288-71279307 | None:intergenic | 15.0% |
| !! | TAATTGGAATATATATCAAA+GGG | + | chr1.4:71278954-71278973 | None:intergenic | 15.0% |
| !! | TATAAAAAGTAGTTATAGAT+TGG | + | chr1.4:71277535-71277554 | None:intergenic | 15.0% |
| !! | TCCTTAAAAAAATTAAATGA+AGG | + | chr1.4:71279675-71279694 | None:intergenic | 15.0% |
| !!! | ATATTATATTATAGACGTTT+TGG | - | chr1.4:71280322-71280341 | MS.gene21344:CDS | 15.0% |
| !!! | ATTAATTAGAACTTTTTTAG+GGG | - | chr1.4:71278043-71278062 | MS.gene21344:intron | 15.0% |
| !!! | CTAATAATATTTGTTTTTTG+AGG | + | chr1.4:71278448-71278467 | None:intergenic | 15.0% |
| !!! | TATGTATGTTTCTTTTTTAA+GGG | - | chr1.4:71278849-71278868 | MS.gene21344:intron | 15.0% |
| !!! | TCCTTCATTTAATTTTTTTA+AGG | - | chr1.4:71279671-71279690 | MS.gene21344:intron | 15.0% |
| !!! | TCTATAACTACTTTTTATAT+CGG | - | chr1.4:71277536-71277555 | MS.gene21344:CDS | 15.0% |
| !!! | TGTTTTCTAATTTTCTTTTT+AGG | - | chr1.4:71279287-71279306 | MS.gene21344:intron | 15.0% |
| !!! | TTACATAATTTTATGACAAT+TGG | - | chr1.4:71280037-71280056 | MS.gene21344:intron | 15.0% |
| !!! | TTATTTATTTGAAGTGAATT+TGG | + | chr1.4:71279627-71279646 | None:intergenic | 15.0% |
| !!! | TTTAATTTTTTTAAGGATGA+CGG | - | chr1.4:71279678-71279697 | MS.gene21344:intron | 15.0% |
| !! | AAAAAATAACGGTAAATTAG+TGG | - | chr1.4:71278015-71278034 | MS.gene21344:intron | 20.0% |
| !! | AAATATTTCGAATGATGATT+TGG | - | chr1.4:71276896-71276915 | MS.gene21344:intron | 20.0% |
| !! | AATATTGCATCTAATTTAGA+CGG | - | chr1.4:71277378-71277397 | MS.gene21344:intron | 20.0% |
| !! | CTAATTGGAATATATATCAA+AGG | + | chr1.4:71278955-71278974 | None:intergenic | 20.0% |
| !! | GTTAGATGTAATAACTTATT+AGG | - | chr1.4:71278133-71278152 | MS.gene21344:CDS | 20.0% |
| !! | TATTTCAATCTCATAAGTTA+GGG | + | chr1.4:71277660-71277679 | None:intergenic | 20.0% |
| !!! | AAATGCAATTCTTCTTTTTT+TGG | + | chr1.4:71277826-71277845 | None:intergenic | 20.0% |
| !!! | AATTGCATTTTTTTTTGTAG+TGG | - | chr1.4:71277836-71277855 | MS.gene21344:CDS | 20.0% |
| !!! | ATTTTATGACAATTGGTATT+TGG | - | chr1.4:71280044-71280063 | MS.gene21344:intron | 20.0% |
| !!! | ATTTTCCATTATTAAAGTGT+CGG | + | chr1.4:71277423-71277442 | None:intergenic | 20.0% |
| !!! | CAAAAAATCAACAAAGTTTT+CGG | + | chr1.4:71280415-71280434 | None:intergenic | 20.0% |
| !!! | GAAAACTTTGTTGATTTTTT+GGG | - | chr1.4:71280414-71280433 | MS.gene21344:CDS | 20.0% |
| !!! | GGAAATTAATTAGAACTTTT+TGG | - | chr1.4:71278064-71278083 | MS.gene21344:intron | 20.0% |
| !!! | GTATGTATGTTTCTTTTTTA+AGG | - | chr1.4:71278848-71278867 | MS.gene21344:intron | 20.0% |
| !!! | TTAATTTTTTTAAGGATGAC+GGG | - | chr1.4:71279679-71279698 | MS.gene21344:intron | 20.0% |
| !!! | TTACTATCATTTCCTATTTT+TGG | + | chr1.4:71279593-71279612 | None:intergenic | 20.0% |
| ! | AAAAAGAAACATACATACCT+AGG | + | chr1.4:71278846-71278865 | None:intergenic | 25.0% |
| ! | AAATAGCATAACATTAGTGA+TGG | + | chr1.4:71278730-71278749 | None:intergenic | 25.0% |
| ! | AAATTCTTAAATCTGTTACC+CGG | - | chr1.4:71278803-71278822 | MS.gene21344:intron | 25.0% |
| ! | AACATCATTCTTGTCAAAAA+AGG | + | chr1.4:71279403-71279422 | None:intergenic | 25.0% |
| ! | AAGTTAAGTGTGAATGAATT+AGG | - | chr1.4:71278531-71278550 | MS.gene21344:intron | 25.0% |
| ! | AATAAAACAGTACTGCTAAT+TGG | + | chr1.4:71278970-71278989 | None:intergenic | 25.0% |
| ! | AGATTATTGATGTTGCAATT+TGG | - | chr1.4:71279052-71279071 | MS.gene21344:intron | 25.0% |
| ! | AGTAGTTGTAGATTATCAAT+GGG | + | chr1.4:71277633-71277652 | None:intergenic | 25.0% |
| ! | ATAAGTTTCTATTGTGATGA+AGG | - | chr1.4:71278995-71279014 | MS.gene21344:intron | 25.0% |
| ! | ATATAAATTCACAACAACAC+AGG | + | chr1.4:71280141-71280160 | None:intergenic | 25.0% |
| ! | ATCCGAGTTTATTTAAATAC+GGG | + | chr1.4:71280237-71280256 | None:intergenic | 25.0% |
| ! | CAATATAACAAGTTACTTGT+TGG | - | chr1.4:71280097-71280116 | MS.gene21344:intron | 25.0% |
| ! | CATCCGAGTTTATTTAAATA+CGG | + | chr1.4:71280238-71280257 | None:intergenic | 25.0% |
| ! | CTAACTTATGAGATTGAAAT+AGG | - | chr1.4:71277659-71277678 | MS.gene21344:intron | 25.0% |
| ! | CTATTTCAATCTCATAAGTT+AGG | + | chr1.4:71277661-71277680 | None:intergenic | 25.0% |
| ! | GATTATTGATGTTGCAATTT+GGG | - | chr1.4:71279053-71279072 | MS.gene21344:intron | 25.0% |
| ! | GCCTTCAAAAAAAAATATGA+CGG | + | chr1.4:71277706-71277725 | None:intergenic | 25.0% |
| ! | TAGTAGTTGTAGATTATCAA+TGG | + | chr1.4:71277634-71277653 | None:intergenic | 25.0% |
| ! | TTGTTGTGAATTTATATCCA+TGG | - | chr1.4:71280144-71280163 | MS.gene21344:intron | 25.0% |
| !! | TCAAAAAAAAATATGACGGA+AGG | + | chr1.4:71277702-71277721 | None:intergenic | 25.0% |
| !! | TCTATCTAAAATTTCAACCA+TGG | + | chr1.4:71280164-71280183 | None:intergenic | 25.0% |
| !!! | AATCGTTGTTATTTTTGTAC+AGG | - | chr1.4:71278773-71278792 | MS.gene21344:intron | 25.0% |
| !!! | ACAAGAATGATGTTTTTTCA+TGG | - | chr1.4:71279409-71279428 | MS.gene21344:intron | 25.0% |
| !!! | ATCGTTGTTATTTTTGTACA+GGG | - | chr1.4:71278774-71278793 | MS.gene21344:intron | 25.0% |
| !!! | ATTTTTGGAAGATCATTTAC+TGG | - | chr1.4:71277093-71277112 | MS.gene21344:intron | 25.0% |
| !!! | CGAAAACTTTGTTGATTTTT+TGG | - | chr1.4:71280413-71280432 | MS.gene21344:CDS | 25.0% |
| !!! | CTAATTTTCTTTTTAGGTAG+AGG | - | chr1.4:71279293-71279312 | MS.gene21344:intron | 25.0% |
| !!! | TAACTACTTTTTATATCGGT+AGG | - | chr1.4:71277540-71277559 | MS.gene21344:CDS | 25.0% |
| !!! | TCCGTCATATTTTTTTTTGA+AGG | - | chr1.4:71277702-71277721 | MS.gene21344:intron | 25.0% |
| !!! | TTTATTGTTTGTTGTTTGCA+GGG | + | chr1.4:71279846-71279865 | None:intergenic | 25.0% |
| !!! | TTTTATTGTTTGTTGTTTGC+AGG | + | chr1.4:71279847-71279866 | None:intergenic | 25.0% |
| !!! | TTTTCCATTATTAAAGTGTC+GGG | + | chr1.4:71277422-71277441 | None:intergenic | 25.0% |
| AAAACACCAAAAACAAGGAA+AGG | + | chr1.4:71278596-71278615 | None:intergenic | 30.0% | |
| AAATCATACTTTCAGATCCT+TGG | - | chr1.4:71279909-71279928 | MS.gene21344:intron | 30.0% | |
| AATTCTTAAATCTGTTACCC+GGG | - | chr1.4:71278804-71278823 | MS.gene21344:intron | 30.0% | |
| AGTAGGTAATACAAAATCAG+TGG | + | chr1.4:71279739-71279758 | None:intergenic | 30.0% | |
| ATTTACGTGTTTACATCACT+AGG | + | chr1.4:71278195-71278214 | None:intergenic | 30.0% | |
| CATATCATCAATTCCAAAAG+AGG | - | chr1.4:71279449-71279468 | MS.gene21344:intron | 30.0% | |
| CGTATTTAAATAAACTCGGA+TGG | - | chr1.4:71280236-71280255 | MS.gene21344:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr1.4:71277881-71277900 | None:intergenic | 30.0% | |
| GACATTTATAATATGACCGA+GGG | + | chr1.4:71277728-71277747 | None:intergenic | 30.0% | |
| GGAACATTATCTTAAAAAGC+TGG | - | chr1.4:71279314-71279333 | MS.gene21344:intron | 30.0% | |
| GTAGTTGTAGATTATCAATG+GGG | + | chr1.4:71277632-71277651 | None:intergenic | 30.0% | |
| GTTATAGATTGGAAATCACA+AGG | + | chr1.4:71277524-71277543 | None:intergenic | 30.0% | |
| GTTTAATCTTACTGTTGTGA+AGG | - | chr1.4:71278553-71278572 | MS.gene21344:intron | 30.0% | |
| TAGAAAATGCAGTCTTTCTT+TGG | + | chr1.4:71280350-71280369 | None:intergenic | 30.0% | |
| TCCCCGTATTTAAATAAACT+CGG | - | chr1.4:71280232-71280251 | MS.gene21344:intron | 30.0% | |
| TCCGAGTTTATTTAAATACG+GGG | + | chr1.4:71280236-71280255 | None:intergenic | 30.0% | |
| TGACATTTATAATATGACCG+AGG | + | chr1.4:71277729-71277748 | None:intergenic | 30.0% | |
| TTGCAAAGTAGATTGCTAAT+GGG | - | chr1.4:71280071-71280090 | MS.gene21344:intron | 30.0% | |
| ! | AAAATCAACAAAGTTTTCGG+TGG | + | chr1.4:71280412-71280431 | None:intergenic | 30.0% |
| ! | GATTTTGTATTACCTACTGA+AGG | - | chr1.4:71279741-71279760 | MS.gene21344:intron | 30.0% |
| !! | CTATTTTTCTTGCTTCTTGT+TGG | - | chr1.4:71280367-71280386 | MS.gene21344:CDS | 30.0% |
| !! | TCAAATTTTGATCCTTCAGT+AGG | + | chr1.4:71279756-71279775 | None:intergenic | 30.0% |
| !!! | ACTTTGTTGATTTTTTGGGT+TGG | - | chr1.4:71280418-71280437 | MS.gene21344:CDS | 30.0% |
| !!! | ATTTCCTATTTTTGGCTCAA+GGG | + | chr1.4:71279585-71279604 | None:intergenic | 30.0% |
| !!! | TATTTTTTTTTGAAGGCCCT+CGG | - | chr1.4:71277709-71277728 | MS.gene21344:intron | 30.0% |
| !!! | TGCAATTCTTCTTTTTTTGG+TGG | + | chr1.4:71277823-71277842 | None:intergenic | 30.0% |
| !!! | TTCCTTGTTTTTGGTGTTTT+TGG | - | chr1.4:71278596-71278615 | MS.gene21344:intron | 30.0% |
| AACTATTAGCATGAAAGAGG+AGG | - | chr1.4:71277004-71277023 | MS.gene21344:intron | 35.0% | |
| AGATAGCTCGATATTTCAGA+CGG | + | chr1.4:71279780-71279799 | None:intergenic | 35.0% | |
| ATAACATGTTCATCAAGCCA+AGG | + | chr1.4:71277247-71277266 | None:intergenic | 35.0% | |
| ATCAAGTTCTGTCTATTCAG+AGG | - | chr1.4:71277349-71277368 | MS.gene21344:intron | 35.0% | |
| ATCCAATCAGTTTGAGCTAT+AGG | + | chr1.4:71277155-71277174 | None:intergenic | 35.0% | |
| CACAGGTTTAAGGAAATGAT+TGG | + | chr1.4:71280124-71280143 | None:intergenic | 35.0% | |
| CACCAAAAACACCAAAAACA+AGG | + | chr1.4:71278601-71278620 | None:intergenic | 35.0% | |
| CAGAAAGTAACAACAGATTG+TGG | + | chr1.4:71278702-71278721 | None:intergenic | 35.0% | |
| CCAGAAATTGAAACAACCAA+GGG | + | chr1.4:71279121-71279140 | None:intergenic | 35.0% | |
| CTTCAAAGGATTTACAACCT+TGG | - | chr1.4:71277227-71277246 | MS.gene21344:intron | 35.0% | |
| GACTGCAAAAATGTAGCTAA+TGG | - | chr1.4:71277275-71277294 | MS.gene21344:intron | 35.0% | |
| GATAAGTACATACTTGTCAC+TGG | + | chr1.4:71278678-71278697 | None:intergenic | 35.0% | |
| GATGAAAAGGTGAGATTGTT+AGG | - | chr1.4:71279804-71279823 | MS.gene21344:intron | 35.0% | |
| GGAAACTATTAGCATGAAAG+AGG | - | chr1.4:71277001-71277020 | MS.gene21344:intron | 35.0% | |
| GTTGCAAAGTAGATTGCTAA+TGG | - | chr1.4:71280070-71280089 | MS.gene21344:intron | 35.0% | |
| TAATCTTACTGTTGTGAAGG+TGG | - | chr1.4:71278556-71278575 | MS.gene21344:intron | 35.0% | |
| TAGAAATAGCAATGCATGCA+TGG | + | chr1.4:71280264-71280283 | None:intergenic | 35.0% | |
| TAGTCCCGACACTTTAATAA+TGG | - | chr1.4:71277415-71277434 | MS.gene21344:intron | 35.0% | |
| TCTAATGCGTACGAATTCTT+AGG | - | chr1.4:71278164-71278183 | MS.gene21344:CDS | 35.0% | |
| TCTTGTTGGAAATAGTGTGT+GGG | - | chr1.4:71280381-71280400 | MS.gene21344:CDS | 35.0% | |
| TGCAAAGTAGATTGCTAATG+GGG | - | chr1.4:71280072-71280091 | MS.gene21344:intron | 35.0% | |
| TGCATAATATATGCAAGGTC+CGG | + | chr1.4:71277876-71277895 | None:intergenic | 35.0% | |
| TGGGGTTTATCACAAATGAT+TGG | + | chr1.4:71277614-71277633 | None:intergenic | 35.0% | |
| TTCACAACAACACAGGTTTA+AGG | + | chr1.4:71280134-71280153 | None:intergenic | 35.0% | |
| TTCCTATAGCTCAAACTGAT+TGG | - | chr1.4:71277150-71277169 | MS.gene21344:intron | 35.0% | |
| TTCTTGTTGGAAATAGTGTG+TGG | - | chr1.4:71280380-71280399 | MS.gene21344:CDS | 35.0% | |
| TTGGACTCAAGAGAATTGAA+CGG | - | chr1.4:71279928-71279947 | MS.gene21344:intron | 35.0% | |
| TTTCATGGACACAACATTCT+AGG | - | chr1.4:71279424-71279443 | MS.gene21344:intron | 35.0% | |
| ! | AATGATTGGTGCTTAAGATG+TGG | + | chr1.4:71277600-71277619 | None:intergenic | 35.0% |
| ! | ACTTGATAGTTTGTCATCAG+AGG | + | chr1.4:71277336-71277355 | None:intergenic | 35.0% |
| ! | ATGATTGGTGCTTAAGATGT+GGG | + | chr1.4:71277599-71277618 | None:intergenic | 35.0% |
| ! | GAATGATGATTTGGAGTTTG+TGG | - | chr1.4:71276905-71276924 | MS.gene21344:intron | 35.0% |
| ! | GCATAACATTAGTGATGGAA+TGG | + | chr1.4:71278725-71278744 | None:intergenic | 35.0% |
| ! | TAACCTTGATGCAGCATTTT+TGG | - | chr1.4:71277078-71277097 | MS.gene21344:intron | 35.0% |
| ! | TGATTTGGAGTTTGTGGAAA+AGG | - | chr1.4:71276911-71276930 | MS.gene21344:intron | 35.0% |
| !! | CGGTGAAAGCATTTAACTTT+CGG | + | chr1.4:71280483-71280502 | None:intergenic | 35.0% |
| !!! | ATTTTTTTTTGTAGTGGCCG+AGG | - | chr1.4:71277842-71277861 | MS.gene21344:CDS | 35.0% |
| !!! | CATTTCCTATTTTTGGCTCA+AGG | + | chr1.4:71279586-71279605 | None:intergenic | 35.0% |
| !!! | CTTGTTTTTGGTGTTTTTGG+TGG | - | chr1.4:71278599-71278618 | MS.gene21344:intron | 35.0% |
| !!! | GATCATTTACTGGTTTTGGT+TGG | - | chr1.4:71277103-71277122 | MS.gene21344:intron | 35.0% |
| !!! | GGAAGATCATTTACTGGTTT+TGG | - | chr1.4:71277099-71277118 | MS.gene21344:intron | 35.0% |
| !!! | GGTTTTGGGATCTAAATTAG+CGG | - | chr1.4:71276944-71276963 | MS.gene21344:intron | 35.0% |
| !!! | TGCTTTCACCGAAAGTTTTT+TGG | - | chr1.4:71280492-71280511 | MS.gene21344:CDS | 35.0% |
| !!! | TTTCCTATTTTTGGCTCAAG+GGG | + | chr1.4:71279584-71279603 | None:intergenic | 35.0% |
| ACAGAAACAAACTACACACC+AGG | + | chr1.4:71279485-71279504 | None:intergenic | 40.0% | |
| AGGTGCAGTATTAGTTGCAA+AGG | + | chr1.4:71279268-71279287 | None:intergenic | 40.0% | |
| AGTTTGTGTGTCTCTTAGCA+AGG | - | chr1.4:71276865-71276884 | MS.gene21344:CDS | 40.0% | |
| CAATTCCAAAAGAGGTTCCA+TGG | - | chr1.4:71279457-71279476 | MS.gene21344:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+GGG | + | chr1.4:71277874-71277893 | None:intergenic | 40.0% | |
| CCAATCAAGTGCAAGATTAG+CGG | - | chr1.4:71279160-71279179 | MS.gene21344:intron | 40.0% | |
| CGCTAATCTTGCACTTGATT+GGG | + | chr1.4:71279162-71279181 | None:intergenic | 40.0% | |
| CGCTTGCGAAATAGTAACAT+GGG | + | chr1.4:71277182-71277201 | None:intergenic | 40.0% | |
| CTTCCAAAAATGCTGCATCA+AGG | + | chr1.4:71277084-71277103 | None:intergenic | 40.0% | |
| GAAGACTGTCTTAGCAGATT+GGG | - | chr1.4:71276980-71276999 | MS.gene21344:intron | 40.0% | |
| GAGCTATCTCGAAGATGAAA+AGG | - | chr1.4:71279791-71279810 | MS.gene21344:intron | 40.0% | |
| GATAGCTCGATATTTCAGAC+GGG | + | chr1.4:71279779-71279798 | None:intergenic | 40.0% | |
| GCATAATATATGCAAGGTCC+GGG | + | chr1.4:71277875-71277894 | None:intergenic | 40.0% | |
| GCCAAGTGCCAAAAAACTTT+CGG | + | chr1.4:71280503-71280522 | None:intergenic | 40.0% | |
| GCCAGAAATTGAAACAACCA+AGG | + | chr1.4:71279122-71279141 | None:intergenic | 40.0% | |
| GCTAATCTTGCACTTGATTG+GGG | + | chr1.4:71279161-71279180 | None:intergenic | 40.0% | |
| GGAACTTCCTTGAATGTTGT+TGG | - | chr1.4:71279963-71279982 | MS.gene21344:intron | 40.0% | |
| GGATGCAGAAAAATTACCCT+TGG | - | chr1.4:71279102-71279121 | MS.gene21344:intron | 40.0% | |
| GGTGCAGTATTAGTTGCAAA+GGG | + | chr1.4:71279267-71279286 | None:intergenic | 40.0% | |
| GTTCAATTCTCTTGAGTCCA+AGG | + | chr1.4:71279929-71279948 | None:intergenic | 40.0% | |
| TACCTCACCAACAACATTCA+AGG | + | chr1.4:71279973-71279992 | None:intergenic | 40.0% | |
| TCGCTTGCGAAATAGTAACA+TGG | + | chr1.4:71277183-71277202 | None:intergenic | 40.0% | |
| TGCAAGATTAGCGGTTTAAG+TGG | - | chr1.4:71279169-71279188 | MS.gene21344:intron | 40.0% | |
| TGCGAAATAGTAACATGGGT+GGG | + | chr1.4:71277178-71277197 | None:intergenic | 40.0% | |
| TGGACTCAAGAGAATTGAAC+GGG | - | chr1.4:71279929-71279948 | MS.gene21344:intron | 40.0% | |
| TGTTGGACTTCTTACTTGCT+TGG | - | chr1.4:71276809-71276828 | MS.gene21344:CDS | 40.0% | |
| TTCCTTGAATGTTGTTGGTG+AGG | - | chr1.4:71279968-71279987 | MS.gene21344:intron | 40.0% | |
| TTGCGAAATAGTAACATGGG+TGG | + | chr1.4:71277179-71277198 | None:intergenic | 40.0% | |
| ! | AAGGCACAATACTCGGTTTT+GGG | - | chr1.4:71276930-71276949 | MS.gene21344:intron | 40.0% |
| ! | CCCTTGGTTGTTTCAATTTC+TGG | - | chr1.4:71279118-71279137 | MS.gene21344:intron | 40.0% |
| ! | TGAGATTAGCTCAGTTGGTA+TGG | + | chr1.4:71277903-71277922 | None:intergenic | 40.0% |
| ! | TGTGGAAAAGGCACAATACT+CGG | - | chr1.4:71276923-71276942 | MS.gene21344:intron | 40.0% |
| !! | AAAGGCACAATACTCGGTTT+TGG | - | chr1.4:71276929-71276948 | MS.gene21344:intron | 40.0% |
| !! | TACATACTTGTCACTGGTTC+TGG | + | chr1.4:71278672-71278691 | None:intergenic | 40.0% |
| !! | TCACTTTTCAGCACAACTGT+TGG | - | chr1.4:71279081-71279100 | MS.gene21344:CDS | 40.0% |
| !!! | ACCGAAAGTTTTTTGGCACT+TGG | - | chr1.4:71280499-71280518 | MS.gene21344:CDS | 40.0% |
| !!! | ATGGAGCCTTTCCTTGTTTT+TGG | - | chr1.4:71278587-71278606 | MS.gene21344:intron | 40.0% |
| !!! | TTCCTATTTTTGGCTCAAGG+GGG | + | chr1.4:71279583-71279602 | None:intergenic | 40.0% |
| AAAAGAGGTTCCATGGTACC+TGG | - | chr1.4:71279464-71279483 | MS.gene21344:intron | 45.0% | |
| AAACTACACACCAGGTACCA+TGG | + | chr1.4:71279477-71279496 | None:intergenic | 45.0% | |
| AAGGAAAGGCTCCATCAAAG+CGG | + | chr1.4:71278582-71278601 | None:intergenic | 45.0% | |
| ATTGAACGGGTACTTCTGGT+TGG | - | chr1.4:71279942-71279961 | MS.gene21344:intron | 45.0% | |
| CCGCTAATCTTGCACTTGAT+TGG | + | chr1.4:71279163-71279182 | None:intergenic | 45.0% | |
| CGAAGACTGTCTTAGCAGAT+TGG | - | chr1.4:71276979-71276998 | MS.gene21344:intron | 45.0% | |
| GAGAATTGAACGGGTACTTC+TGG | - | chr1.4:71279938-71279957 | MS.gene21344:intron | 45.0% | |
| GCAAGAGAGTCTAATCGTGA+AGG | + | chr1.4:71278497-71278516 | None:intergenic | 45.0% | |
| GCTGTACCAACATAGCACAA+AGG | + | chr1.4:71276765-71276784 | None:intergenic | 45.0% | |
| GTTACTATTTCGCAAGCGAG+AGG | - | chr1.4:71277184-71277203 | MS.gene21344:intron | 45.0% | |
| TTGCAGGGAACAGAAGAGAT+TGG | + | chr1.4:71279831-71279850 | None:intergenic | 45.0% | |
| TTGGTACAGCAGACAACGTT+GGG | - | chr1.4:71276775-71276794 | MS.gene21344:CDS | 45.0% | |
| ! | ACTTTCGGTGCACATGCAAA+TGG | + | chr1.4:71280468-71280487 | None:intergenic | 45.0% |
| ! | AGGTACCATGGAACCTCTTT+TGG | + | chr1.4:71279465-71279484 | None:intergenic | 45.0% |
| ! | CAACAAAGTTTTCGGTGGCA+TGG | + | chr1.4:71280407-71280426 | None:intergenic | 45.0% |
| ! | GTTGGGAAGTACACACATGT+TGG | - | chr1.4:71276792-71276811 | MS.gene21344:CDS | 45.0% |
| !! | ATACTTGTCACTGGTTCTGG+CGG | + | chr1.4:71278669-71278688 | None:intergenic | 45.0% |
| !! | GGTTGCATCTAGCTCTTCAA+AGG | - | chr1.4:71277213-71277232 | MS.gene21344:intron | 45.0% |
| !!! | CTGGTTTTGGTTGGTGCATA+AGG | - | chr1.4:71277112-71277131 | MS.gene21344:intron | 45.0% |
| !!! | TCCTATTTTTGGCTCAAGGG+GGG | + | chr1.4:71279582-71279601 | None:intergenic | 45.0% |
| AAGAGCTAGATGCAACCGCT+AGG | + | chr1.4:71277210-71277229 | None:intergenic | 50.0% | |
| ACTGATCGTGTGCATGTGGT+TGG | - | chr1.4:71279702-71279721 | MS.gene21344:intron | 50.0% | |
| CCAACTGAGCTAATCTCACG+AGG | - | chr1.4:71277905-71277924 | MS.gene21344:CDS | 50.0% | |
| GTCAATCAGCTGAAGGACCT+AGG | - | chr1.4:71278826-71278845 | MS.gene21344:intron | 50.0% | |
| GTCTTGCACAAGCTGCTATC+AGG | - | chr1.4:71277043-71277062 | MS.gene21344:intron | 50.0% | |
| GTTGGTACAGCAGACAACGT+TGG | - | chr1.4:71276774-71276793 | MS.gene21344:CDS | 50.0% | |
| TCGGTGCACATGCAAATGGT+GGG | + | chr1.4:71280464-71280483 | None:intergenic | 50.0% | |
| ! | CCTCGTGAGATTAGCTCAGT+TGG | + | chr1.4:71277908-71277927 | None:intergenic | 50.0% |
| ! | TTCGGTGCACATGCAAATGG+TGG | + | chr1.4:71280465-71280484 | None:intergenic | 50.0% |
| !!! | CCTATTTTTGGCTCAAGGGG+GGG | + | chr1.4:71279581-71279600 | None:intergenic | 50.0% |
| !!! | CTATTTTTGGCTCAAGGGGG+GGG | + | chr1.4:71279580-71279599 | None:intergenic | 50.0% |
| !!! | TATTTTTGGCTCAAGGGGGG+GGG | + | chr1.4:71279579-71279598 | None:intergenic | 50.0% |
| AAGGTCCGGGGTTCAAACCT+CGG | + | chr1.4:71277862-71277881 | None:intergenic | 55.0% | |
| CCCCCCCTTGAGCCAAAAAT+AGG | - | chr1.4:71279578-71279597 | MS.gene21344:intron | 55.0% | |
| GGTCCTTCAGCTGATTGACC+CGG | + | chr1.4:71278825-71278844 | None:intergenic | 55.0% | |
| GTCCTTCAGCTGATTGACCC+GGG | + | chr1.4:71278824-71278843 | None:intergenic | 55.0% | |
| TACCCGGGTCAATCAGCTGA+AGG | - | chr1.4:71278819-71278838 | MS.gene21344:intron | 55.0% | |
| ! | TGTGAAGGTGGCCGCTTTGA+TGG | - | chr1.4:71278568-71278587 | MS.gene21344:intron | 55.0% |
| !!! | ATTTTTGGCTCAAGGGGGGG+GGG | + | chr1.4:71279578-71279597 | None:intergenic | 55.0% |
| AGTGGCCGAGGTTTGAACCC+CGG | - | chr1.4:71277854-71277873 | MS.gene21344:CDS | 60.0% | |
| CGGGACTGATCGTGTGCATG+TGG | - | chr1.4:71279698-71279717 | MS.gene21344:intron | 60.0% | |
| GTGCATGTGGTTGGAGCTCG+TGG | - | chr1.4:71279711-71279730 | MS.gene21344:intron | 60.0% | |
| TTCGCAAGCGAGAGGCCTAG+CGG | - | chr1.4:71277192-71277211 | MS.gene21344:intron | 60.0% | |
| !!! | TTTTTGGCTCAAGGGGGGGG+GGG | + | chr1.4:71279577-71279596 | None:intergenic | 60.0% |
| !!! | TTTTGGCTCAAGGGGGGGGG+GGG | + | chr1.4:71279576-71279595 | None:intergenic | 65.0% |
| ! | TTTGGCTCAAGGGGGGGGGG+GGG | + | chr1.4:71279575-71279594 | None:intergenic | 70.0% |
| TTGGCTCAAGGGGGGGGGGG+GGG | + | chr1.4:71279574-71279593 | None:intergenic | 75.0% | |
| ! | TGGCTCAAGGGGGGGGGGGG+GGG | + | chr1.4:71279573-71279592 | None:intergenic | 80.0% |
| ! | CTCAAGGGGGGGGGGGGGGG+GGG | + | chr1.4:71279570-71279589 | None:intergenic | 85.0% |
| ! | GCTCAAGGGGGGGGGGGGGG+GGG | + | chr1.4:71279571-71279590 | None:intergenic | 85.0% |
| ! | GGCTCAAGGGGGGGGGGGGG+GGG | + | chr1.4:71279572-71279591 | None:intergenic | 85.0% |
| ! | TCAAGGGGGGGGGGGGGGGG+GGG | + | chr1.4:71279569-71279588 | None:intergenic | 85.0% |
| ! | AAGGGGGGGGGGGGGGGGGG+GGG | + | chr1.4:71279567-71279586 | None:intergenic | 90.0% |
| ! | CAAGGGGGGGGGGGGGGGGG+GGG | + | chr1.4:71279568-71279587 | None:intergenic | 90.0% |
| ! | AGGGGGGGGGGGGGGGGGGG+GGG | + | chr1.4:71279566-71279585 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 71276759 | 71280530 | 71276759 | ID=MS.gene21344 |
| chr1.4 | mRNA | 71276759 | 71280530 | 71276759 | ID=MS.gene21344.t1;Parent=MS.gene21344 |
| chr1.4 | exon | 71280261 | 71280530 | 71280261 | ID=MS.gene21344.t1.exon1;Parent=MS.gene21344.t1 |
| chr1.4 | CDS | 71280261 | 71280530 | 71280261 | ID=cds.MS.gene21344.t1;Parent=MS.gene21344.t1 |
| chr1.4 | exon | 71279081 | 71279103 | 71279081 | ID=MS.gene21344.t1.exon2;Parent=MS.gene21344.t1 |
| chr1.4 | CDS | 71279081 | 71279103 | 71279081 | ID=cds.MS.gene21344.t1;Parent=MS.gene21344.t1 |
| chr1.4 | exon | 71278442 | 71278494 | 71278442 | ID=MS.gene21344.t1.exon3;Parent=MS.gene21344.t1 |
| chr1.4 | CDS | 71278442 | 71278494 | 71278442 | ID=cds.MS.gene21344.t1;Parent=MS.gene21344.t1 |
| chr1.4 | exon | 71278079 | 71278197 | 71278079 | ID=MS.gene21344.t1.exon4;Parent=MS.gene21344.t1 |
| chr1.4 | CDS | 71278079 | 71278197 | 71278079 | ID=cds.MS.gene21344.t1;Parent=MS.gene21344.t1 |
| chr1.4 | exon | 71277804 | 71277980 | 71277804 | ID=MS.gene21344.t1.exon5;Parent=MS.gene21344.t1 |
| chr1.4 | CDS | 71277804 | 71277980 | 71277804 | ID=cds.MS.gene21344.t1;Parent=MS.gene21344.t1 |
| chr1.4 | exon | 71277477 | 71277596 | 71277477 | ID=MS.gene21344.t1.exon6;Parent=MS.gene21344.t1 |
| chr1.4 | CDS | 71277477 | 71277596 | 71277477 | ID=cds.MS.gene21344.t1;Parent=MS.gene21344.t1 |
| chr1.4 | exon | 71277300 | 71277365 | 71277300 | ID=MS.gene21344.t1.exon7;Parent=MS.gene21344.t1 |
| chr1.4 | CDS | 71277300 | 71277365 | 71277300 | ID=cds.MS.gene21344.t1;Parent=MS.gene21344.t1 |
| chr1.4 | exon | 71276759 | 71276893 | 71276759 | ID=MS.gene21344.t1.exon8;Parent=MS.gene21344.t1 |
| chr1.4 | CDS | 71276759 | 71276893 | 71276759 | ID=cds.MS.gene21344.t1;Parent=MS.gene21344.t1 |
| Gene Sequence |
| Protein sequence |
