AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060998


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060998.t1 MTR_4g121940 85.586 111 8 1 1 103 16 126 1.53e-63 192
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060998.t1 AT3G16990 57.273 110 39 2 1 102 6 115 4.48e-39 130

Find 0 sgRNAs with CRISPR-Local

Find 27 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATTTATTTCAATTTTGC+AGG + 32438:11934-11953 MS.gene060998:intron 20.0%
!! TAGTTTTTGTTAGGTTTTTG+AGG - 32438:12148-12167 None:intergenic 25.0%
CTCTCAAGGATGAAATATTA+TGG + 32438:12074-12093 MS.gene060998:CDS 30.0%
GATGATGTGGAAGTTATATT+GGG + 32438:12040-12059 MS.gene060998:CDS 30.0%
TTTGAAGGAATGAGATTGAA+CGG - 32438:11854-11873 None:intergenic 30.0%
! TGATGATGTGGAAGTTATAT+TGG + 32438:12039-12058 MS.gene060998:CDS 30.0%
CAATCTCATTCCTTCAAACA+TGG + 32438:11856-11875 MS.gene060998:CDS 35.0%
TAAGAGAGAAGCCAACAAAT+GGG + 32438:12099-12118 MS.gene060998:CDS 35.0%
TTAAGAGAGAAGCCAACAAA+TGG + 32438:12098-12117 MS.gene060998:CDS 35.0%
! TATTTCAATTTTGCAGGCTC+AGG + 32438:11940-11959 MS.gene060998:intron 35.0%
AAGAGAGAAGCCAACAAATG+GGG + 32438:12100-12119 MS.gene060998:CDS 40.0%
ATCAGCACACTAGCAACAAA+TGG - 32438:11992-12011 None:intergenic 40.0%
CACGGATGGAGAGAATAAAA+GGG - 32438:11825-11844 None:intergenic 40.0%
GAGTGAAATACCCCATTTGT+TGG - 32438:12113-12132 None:intergenic 40.0%
GATGTGGAAGTTATATTGGG+AGG + 32438:12043-12062 MS.gene060998:CDS 40.0%
GGAAGTTATATTGGGAGGTA+TGG + 32438:12048-12067 MS.gene060998:CDS 40.0%
TACTTACGAGCCATGTTTGA+AGG - 32438:11869-11888 None:intergenic 40.0%
TCACGGATGGAGAGAATAAA+AGG - 32438:11826-11845 None:intergenic 40.0%
TTTATTCTCTCCATCCGTGA+TGG + 32438:11826-11845 MS.gene060998:CDS 40.0%
! ATCAGATGACAGTGATGATG+TGG + 32438:12027-12046 MS.gene060998:CDS 40.0%
!! TGTGCTGATTAAAGCTTGCA+AGG + 32438:12003-12022 MS.gene060998:CDS 40.0%
!! GGAGAGAATAAAAGGGTGTC+TGG - 32438:11818-11837 None:intergenic 45.0%
TTGCTGCGTCGTAGATAGGA+CGG - 32438:11795-11814 None:intergenic 50.0%
!! GAGATTGAACGGTGCCATCA+CGG - 32438:11843-11862 None:intergenic 50.0%
CTGGTTGCTGCGTCGTAGAT+AGG - 32438:11799-11818 None:intergenic 55.0%
! GGGAGGTATGGCTTCTCTCA+AGG + 32438:12060-12079 MS.gene060998:CDS 55.0%
!! TTGAACGGTGCCATCACGGA+TGG - 32438:11839-11858 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
32438 gene 11766 12173 11766 ID=MS.gene060998
32438 mRNA 11766 12173 11766 ID=MS.gene060998.t1;Parent=MS.gene060998
32438 exon 11766 11881 11766 ID=MS.gene060998.t1.exon1;Parent=MS.gene060998.t1
32438 CDS 11766 11881 11766 ID=cds.MS.gene060998.t1;Parent=MS.gene060998.t1
32438 exon 11979 12173 11979 ID=MS.gene060998.t1.exon2;Parent=MS.gene060998.t1
32438 CDS 11979 12173 11979 ID=cds.MS.gene060998.t1;Parent=MS.gene060998.t1
Gene Sequence

>MS.gene060998

ATGACAGAAACATGGTTGAGGAAACACCGTCCTATCTACGACGCAGCAACCAGACACCCTTTTATTCTCTCCATCCGTGATGGCACCGTTCAATCTCATTCCTTCAAACATGGCTCGTAAGTAATTTTCAATACATCTCTCTCTTCTCTTTTTATTAGTATCATTTTTTCAATTTATTTCAATTTTGCAGGCTCAGGATTACTTGTTTGTTAGAGAGTTTGTTCCATTTGTTGCTAGTGTGCTGATTAAAGCTTGCAAGGAATCAGATGACAGTGATGATGTGGAAGTTATATTGGGAGGTATGGCTTCTCTCAAGGATGAAATATTATGGTTTAAGAGAGAAGCCAACAAATGGGGTATTTCACTCTCAGACGTTGTTCCTCAAAAACCTAACAAAAACTATTGCAG

Protein sequence

>MS.gene060998.t1

MTETWLRKHRPIYDAATRHPFILSIRDGTVQSHSFKHGSEFVPFVASVLIKACKESDDSDDVEVILGGMASLKDEILWFKREANKWGISLSDVVPQKPNKNYC