AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21578

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21578.t1 MTR_1g090090 93.778 225 14 0 1 225 1 225 5.45e-159 439
MS.gene21578.t1 MTR_1g090060 83.556 225 37 0 1 225 1 225 1.50e-141 395
MS.gene21578.t1 MTR_1g090100 83.721 215 35 0 4 218 3 217 1.13e-133 375
MS.gene21578.t1 MTR_1g090070 78.733 221 46 1 1 220 7 227 9.32e-129 362
MS.gene21578.t1 MTR_4g059730 67.442 215 70 0 3 217 4 218 6.00e-106 305
MS.gene21578.t1 MTR_1g115195 48.095 210 106 2 1 208 1 209 5.76e-64 198
MS.gene21578.t1 MTR_1g090150 45.972 211 111 2 1 210 1 209 2.24e-59 186
MS.gene21578.t1 MTR_3g099757 45.045 222 110 5 1 214 1 218 2.93e-57 181
MS.gene21578.t1 MTR_4g019780 44.762 210 110 3 3 210 8 213 9.74e-54 172
MS.gene21578.t1 MTR_4g019790 42.381 210 117 2 2 210 6 212 1.69e-53 171
MS.gene21578.t1 MTR_7g065230 42.986 221 117 4 3 222 7 219 2.30e-53 171
MS.gene21578.t1 MTR_7g065660 43.810 210 110 5 4 210 8 212 2.79e-51 166
MS.gene21578.t1 MTR_7g065720 43.333 210 114 2 3 210 7 213 6.29e-51 165
MS.gene21578.t1 MTR_7g065590 40.991 222 125 3 3 222 7 224 6.66e-51 165
MS.gene21578.t1 MTR_6g080440 40.611 229 124 3 1 224 1 222 1.77e-50 164
MS.gene21578.t1 MTR_5g040430 41.121 214 118 4 2 209 6 217 2.31e-50 164
MS.gene21578.t1 MTR_8g087425 41.818 220 118 2 3 214 5 222 2.71e-49 160
MS.gene21578.t1 MTR_7g065740 41.429 210 118 2 3 210 7 213 3.10e-49 160
MS.gene21578.t1 MTR_7g065630 40.724 221 119 4 3 220 25 236 2.77e-48 159
MS.gene21578.t1 MTR_7g065710 41.827 208 113 3 4 210 5 205 3.46e-48 158
MS.gene21578.t1 MTR_7g065600 39.367 221 128 4 4 222 8 224 3.56e-48 158
MS.gene21578.t1 MTR_7g065750 41.038 212 114 3 3 209 7 212 7.07e-48 157
MS.gene21578.t1 MTR_8g087410 41.827 208 119 1 3 210 6 211 5.98e-47 155
MS.gene21578.t1 MTR_2g070120 40.670 209 119 3 3 210 4 208 2.47e-46 153
MS.gene21578.t1 MTR_2g070210 41.232 211 117 4 3 210 4 210 2.94e-46 153
MS.gene21578.t1 MTR_2g070200 43.602 211 112 5 3 210 4 210 5.51e-46 152
MS.gene21578.t1 MTR_2g070150 43.415 205 111 3 3 206 4 204 1.06e-45 151
MS.gene21578.t1 MTR_7g065290 39.048 210 124 2 3 211 7 213 1.97e-45 151
MS.gene21578.t1 MTR_2g070130 39.070 215 123 4 3 216 4 211 5.86e-45 149
MS.gene21578.t1 MTR_5g037380 38.889 216 122 4 3 210 5 218 1.59e-44 149
MS.gene21578.t1 MTR_2g070180 40.000 215 121 4 3 216 4 211 2.16e-44 148
MS.gene21578.t1 MTR_7g065700 43.602 211 107 4 3 210 7 208 5.27e-44 147
MS.gene21578.t1 MTR_7g065260 40.807 223 125 5 3 222 14 232 8.89e-44 147
MS.gene21578.t1 MTR_7g065270 39.048 210 124 2 3 211 7 213 1.06e-43 146
MS.gene21578.t1 MTR_8g061950 39.912 228 125 6 2 220 4 228 2.44e-43 146
MS.gene21578.t1 MTR_7g065680 41.905 210 112 4 3 210 7 208 5.20e-43 144
MS.gene21578.t1 MTR_7g065640 40.385 208 102 3 4 210 8 194 7.06e-43 144
MS.gene21578.t1 MTR_7g065265 38.095 210 126 2 3 211 7 213 4.34e-42 142
MS.gene21578.t1 MTR_2g070140 42.347 196 108 3 16 210 1 192 6.79e-42 141
MS.gene21578.t1 MTR_2g070060 40.191 209 120 3 3 210 4 208 1.80e-39 135
MS.gene21578.t1 MTR_3g467430 39.423 208 121 3 4 210 10 213 1.99e-39 135
MS.gene21578.t1 MTR_4g124130 39.726 219 124 5 3 218 4 217 3.37e-39 135
MS.gene21578.t1 MTR_3g467420 38.571 210 124 3 2 210 8 213 4.86e-38 132
MS.gene21578.t1 MTR_8g056940 39.109 202 118 3 10 210 11 208 3.31e-37 129
MS.gene21578.t1 MTR_2g070070 39.713 209 121 3 3 210 4 208 3.83e-36 127
MS.gene21578.t1 MTR_2g070110 40.097 207 116 5 3 207 4 204 5.12e-35 124
MS.gene21578.t1 MTR_5g076900 35.468 203 126 3 9 210 12 210 4.12e-32 116
MS.gene21578.t1 MTR_0186s0030 46.565 131 69 1 10 139 11 141 8.66e-31 110
MS.gene21578.t1 MTR_2g072120 60.714 56 21 1 47 101 2 57 3.94e-18 76.3
MS.gene21578.t1 MTR_5g037390 42.500 80 43 1 29 105 13 92 3.30e-13 63.9
MS.gene21578.t1 MTR_4g134370 25.806 217 141 7 1 205 13 221 8.52e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21578.t1 AT2G29470 39.819 221 127 5 4 221 8 225 6.31e-51 165
MS.gene21578.t1 AT3G09270 46.262 214 99 7 4 209 7 212 2.23e-50 164
MS.gene21578.t1 AT2G29460 38.813 219 131 2 3 220 7 223 1.26e-49 162
MS.gene21578.t1 AT2G29450 38.636 220 131 3 3 220 6 223 5.63e-48 157
MS.gene21578.t1 AT2G29490 39.726 219 127 4 4 220 8 223 7.71e-48 157
MS.gene21578.t1 AT2G29420 39.352 216 129 1 3 218 9 222 8.06e-47 154
MS.gene21578.t1 AT2G29480 39.726 219 127 4 4 220 8 223 3.24e-46 153
MS.gene21578.t1 AT1G10370 39.286 224 131 3 2 220 4 227 1.16e-45 152
MS.gene21578.t1 AT1G59670 40.654 214 121 4 3 210 6 219 1.42e-45 152
MS.gene21578.t1 AT2G29440 37.838 222 129 5 3 220 6 222 7.49e-44 147
MS.gene21578.t1 AT1G78370 38.350 206 122 3 6 210 7 208 2.39e-43 145
MS.gene21578.t1 AT1G59700 39.720 214 123 4 3 210 6 219 7.24e-43 145
MS.gene21578.t1 AT1G78340 40.191 209 120 3 3 210 4 208 1.41e-42 143
MS.gene21578.t1 AT1G17180 38.278 209 124 3 3 210 4 208 3.60e-42 142
MS.gene21578.t1 AT1G78320 38.647 207 122 3 3 208 4 206 2.07e-41 140
MS.gene21578.t1 AT1G17170 39.234 209 121 4 3 210 4 207 3.63e-41 140
MS.gene21578.t1 AT1G74590 36.792 212 131 2 2 210 6 217 4.38e-41 140
MS.gene21578.t1 AT5G62480 35.909 220 120 5 3 208 8 220 8.09e-41 139
MS.gene21578.t1 AT1G10360 38.565 223 132 3 3 220 5 227 1.28e-40 139
MS.gene21578.t1 AT1G78380 38.426 216 128 3 3 217 4 215 2.00e-40 138
MS.gene21578.t1 AT3G43800 40.670 209 117 4 3 207 5 210 6.22e-39 134
MS.gene21578.t1 AT1G78360 37.441 211 126 4 2 210 3 209 1.23e-38 133
MS.gene21578.t1 AT1G69930 37.104 221 121 4 4 213 13 226 4.09e-38 132
MS.gene21578.t1 AT1G69920 37.089 213 128 4 4 210 35 247 2.34e-37 131
MS.gene21578.t1 AT1G17190 33.790 219 140 3 3 220 5 219 2.83e-36 127
MS.gene21578.t1 AT1G53680 38.424 203 116 5 9 207 13 210 5.38e-36 127
MS.gene21578.t1 AT1G27130 35.681 213 131 4 4 210 7 219 7.13e-36 126
MS.gene21578.t1 AT1G27140 35.294 221 136 4 4 217 7 227 2.23e-34 123
MS.gene21578.t1 AT5G62480 28.571 217 113 4 3 208 8 193 1.50e-24 97.1
MS.gene21578.t1 AT5G62480 28.571 217 114 4 3 208 8 194 1.77e-24 96.7
MS.gene21578.t1 AT1G78320 30.097 206 114 3 3 208 4 179 5.50e-22 89.7

Find 53 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAGCTCAAGCCCGATTT+TGG 0.149238 1.3:-62992792 MS.gene21578:CDS
AGGTATACCCTTTAGATTTA+AGG 0.185761 1.3:+62992996 None:intergenic
AGAAGGCTAAAGAGAATTTA+TGG 0.203200 1.3:-62991950 MS.gene21578:CDS
GATGATCGGAAGAAATTCTA+TGG 0.254668 1.3:-62991894 MS.gene21578:CDS
TCGGGCTTGAGCTTTGTTAT+AGG 0.275621 1.3:+62992798 None:intergenic
CGGGCTTGAGCTTTGTTATA+GGG 0.286499 1.3:+62992799 None:intergenic
CATACAACCCTTAAAGTAAA+AGG 0.294008 1.3:+62993021 None:intergenic
AGGTGAAACTACATGGATTT+TGG 0.302285 1.3:-62993050 MS.gene21578:CDS
CAACATATTTAACCCAAAAT+CGG 0.352973 1.3:+62992779 None:intergenic
GCCACCAACTTCTCTTGGTC+AGG 0.366758 1.3:+62991705 None:intergenic
ACTGGAGTATTCTTGCGTAC+TGG 0.374422 1.3:+62992916 None:intergenic
TTGAATACATTGATGAGATA+TGG 0.380718 1.3:-62992849 MS.gene21578:CDS
CTGGAGTATTCTTGCGTACT+GGG 0.394761 1.3:+62992917 None:intergenic
TATTAAACCATAAATGCAAT+CGG 0.423005 1.3:+62991763 None:intergenic
AACATATTTAACCCAAAATC+GGG 0.426033 1.3:+62992780 None:intergenic
ATTAAACCATAAATGCAATC+GGG 0.438271 1.3:+62991764 None:intergenic
AGAATATCTTGCAAAGTGAT+AGG 0.439429 1.3:-62991791 MS.gene21578:CDS
AGTTGTTGAGGATCGGTGTT+TGG 0.448281 1.3:-62991916 MS.gene21578:CDS
GTATGGACCTTAAATCTAAA+GGG 0.454324 1.3:-62993003 MS.gene21578:CDS
TGTATGGACCTTAAATCTAA+AGG 0.461228 1.3:-62993004 MS.gene21578:CDS
ATTCAAGATTTCGGCAATTG+AGG 0.464775 1.3:-62992006 MS.gene21578:intron
AGCATTGTAGACATAACTCT+TGG 0.468767 1.3:-62991858 MS.gene21578:CDS
GAAAAGCCACCAACTTCTCT+TGG 0.471664 1.3:+62991700 None:intergenic
AGTTATGTCTACAATGCTAA+TGG 0.474387 1.3:+62991863 None:intergenic
GAAGGCTAAAGAGAATTTAT+GGG 0.475049 1.3:-62991949 MS.gene21578:CDS
TTTATGGTTTAATAATTTCA+AGG 0.477721 1.3:-62991754 MS.gene21578:CDS
ATGATCATGGACTCACATAT+CGG 0.479454 1.3:+62992874 None:intergenic
AATGTATTCAACAATGATCA+TGG 0.484642 1.3:+62992861 None:intergenic
AGGATCGGTGTTTGGATGAT+CGG 0.496202 1.3:-62991908 MS.gene21578:CDS
TCTTCCTCTATATTCTCATA+AGG 0.499579 1.3:+62992976 None:intergenic
CACCCCTGACCAAGAGAAGT+TGG 0.508213 1.3:-62991709 MS.gene21578:CDS
TTTCCATCATGAACTAGCAC+TGG 0.520703 1.3:+62992898 None:intergenic
GCTCTTCACAACTTATGCTA+TGG 0.547521 1.3:+62991976 None:intergenic
ATGGCAGAGGTGAAACTACA+TGG 0.553227 1.3:-62993057 MS.gene21578:CDS
CCACCAACTTCTCTTGGTCA+GGG 0.554529 1.3:+62991706 None:intergenic
GACTCAAAGTTGTTGAGGAT+CGG 0.561201 1.3:-62991923 MS.gene21578:CDS
TATACCTTATGAGAATATAG+AGG 0.570973 1.3:-62992980 MS.gene21578:CDS
GGGTTATATTGAAGAAGTTG+AGG 0.572701 1.3:+62992937 None:intergenic
ATGATCGGAAGAAATTCTAT+GGG 0.573289 1.3:-62991893 MS.gene21578:CDS
GGTTAAATATGTTGATGGCA+TGG 0.574067 1.3:-62992770 MS.gene21578:intron
ACTCCAGTGCTAGTTCATGA+TGG 0.582679 1.3:-62992901 MS.gene21578:CDS
GCTTTGTTATAGGGATCAGT+AGG 0.583368 1.3:+62992808 None:intergenic
TTAAACCATAAATGCAATCG+GGG 0.593715 1.3:+62991765 None:intergenic
GGCGCGACTCAAAGTTGTTG+AGG 0.594370 1.3:-62991928 MS.gene21578:CDS
AAGTTGTGAAGAGCGAGAGA+AGG 0.595648 1.3:-62991967 MS.gene21578:CDS
CTTCACAACTTATGCTATGG+CGG 0.605752 1.3:+62991979 None:intergenic
CCCTGACCAAGAGAAGTTGG+TGG 0.608979 1.3:-62991706 MS.gene21578:CDS
CACCAACTTCTCTTGGTCAG+GGG 0.619146 1.3:+62991707 None:intergenic
CAAGCTTAGTAGGATGGCAG+AGG 0.619971 1.3:-62993070 None:intergenic
GTAGGAAGCAATGAGTTGTG+TGG 0.680510 1.3:+62992826 None:intergenic
TAAACCATAAATGCAATCGG+GGG 0.688859 1.3:+62991766 None:intergenic
TGATCGGAAGAAATTCTATG+GGG 0.697994 1.3:-62991892 MS.gene21578:CDS
GATCGGAAGAAATTCTATGG+GGG 0.712756 1.3:-62991891 MS.gene21578:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGATTATAGTTATAAAAT+AGG + chr1.3:62992589-62992608 None:intergenic 10.0%
!! TTTAAAAACGTCAATAATAT+TGG + chr1.3:62992482-62992501 None:intergenic 15.0%
!! TTTATGGTTTAATAATTTCA+AGG - chr1.3:62992956-62992975 MS.gene21578:CDS 15.0%
!! AAAATAAGACAAAGTTAGTT+TGG - chr1.3:62992455-62992474 MS.gene21578:intron 20.0%
!! AAAGAAATGAATTATGTTCA+AGG - chr1.3:62992545-62992564 MS.gene21578:intron 20.0%
!! TATTAAACCATAAATGCAAT+CGG + chr1.3:62992950-62992969 None:intergenic 20.0%
!! TCTTCTAATTGAAAAAATCA+AGG - chr1.3:62993037-62993056 MS.gene21578:CDS 20.0%
! AACATATTTAACCCAAAATC+GGG + chr1.3:62991933-62991952 None:intergenic 25.0%
! AATCATATCGATGGTATATA+AGG + chr1.3:62992656-62992675 None:intergenic 25.0%
! AATGTATTCAACAATGATCA+TGG + chr1.3:62991852-62991871 None:intergenic 25.0%
! AGTAATGTTTATAAGACACA+AGG + chr1.3:62992627-62992646 None:intergenic 25.0%
! ATTAAACCATAAATGCAATC+GGG + chr1.3:62992949-62992968 None:intergenic 25.0%
! ATTCAAACTAACAACACTAT+TGG - chr1.3:62992673-62992692 MS.gene21578:intron 25.0%
! CAAAATTAGCATAATCTTAC+TGG + chr1.3:62992284-62992303 None:intergenic 25.0%
! CAACATATTTAACCCAAAAT+CGG + chr1.3:62991934-62991953 None:intergenic 25.0%
! GGATCAATAATTCAAGATTT+CGG - chr1.3:62992695-62992714 MS.gene21578:intron 25.0%
! TATACCTTATGAGAATATAG+AGG - chr1.3:62991730-62991749 MS.gene21578:CDS 25.0%
! TGAAAAAACTAATTTGACCA+AGG + chr1.3:62992072-62992091 None:intergenic 25.0%
! TTCAAACTAACAACACTATT+GGG - chr1.3:62992674-62992693 MS.gene21578:intron 25.0%
! TTGAATACATTGATGAGATA+TGG - chr1.3:62991861-62991880 MS.gene21578:CDS 25.0%
!! GTATAGTCCTTTTACTTTAA+GGG - chr1.3:62991682-62991701 MS.gene21578:CDS 25.0%
!!! GAATGAAAGTGTTTATTCAA+CGG + chr1.3:62992141-62992160 None:intergenic 25.0%
!!! TTTTGGGTTAAATATGTTGA+TGG - chr1.3:62991935-62991954 MS.gene21578:CDS 25.0%
AAACTAATTTGACCAAGGTA+AGG + chr1.3:62992067-62992086 None:intergenic 30.0%
AGAAGGCTAAAGAGAATTTA+TGG - chr1.3:62992760-62992779 MS.gene21578:intron 30.0%
AGAATATCTTGCAAAGTGAT+AGG - chr1.3:62992919-62992938 MS.gene21578:CDS 30.0%
AGGTATACCCTTTAGATTTA+AGG + chr1.3:62991717-62991736 None:intergenic 30.0%
AGTTATGTCTACAATGCTAA+TGG + chr1.3:62992850-62992869 None:intergenic 30.0%
ATAAAATGATCACGATGGAA+AGG + chr1.3:62992026-62992045 None:intergenic 30.0%
ATGATCGGAAGAAATTCTAT+GGG - chr1.3:62992817-62992836 MS.gene21578:CDS 30.0%
CATACAACCCTTAAAGTAAA+AGG + chr1.3:62991692-62991711 None:intergenic 30.0%
CTAGACACGAAAGAAAAAAA+TGG - chr1.3:62992515-62992534 MS.gene21578:intron 30.0%
GAAGGCTAAAGAGAATTTAT+GGG - chr1.3:62992761-62992780 MS.gene21578:intron 30.0%
GTATGGACCTTAAATCTAAA+GGG - chr1.3:62991707-62991726 MS.gene21578:CDS 30.0%
TATCGATGGTATATAAGGTA+AGG + chr1.3:62992651-62992670 None:intergenic 30.0%
TCTTCCTCTATATTCTCATA+AGG + chr1.3:62991737-62991756 None:intergenic 30.0%
TGTATGGACCTTAAATCTAA+AGG - chr1.3:62991706-62991725 MS.gene21578:CDS 30.0%
TTAAACCATAAATGCAATCG+GGG + chr1.3:62992948-62992967 None:intergenic 30.0%
! CAAAGATAGTCTAATTTTGC+TGG + chr1.3:62992233-62992252 None:intergenic 30.0%
! GGTATAGTCCTTTTACTTTA+AGG - chr1.3:62991681-62991700 MS.gene21578:CDS 30.0%
! GTTAGTTTGAATCATATCGA+TGG + chr1.3:62992665-62992684 None:intergenic 30.0%
! TTCCATCGTGATCATTTTAT+AGG - chr1.3:62992026-62992045 MS.gene21578:intron 30.0%
!! CTTTTACTTTAAGGGTTGTA+TGG - chr1.3:62991690-62991709 MS.gene21578:CDS 30.0%
AGACACAAGGCAAAGTAAAT+TGG + chr1.3:62992614-62992633 None:intergenic 35.0%
AGCATTGTAGACATAACTCT+TGG - chr1.3:62992852-62992871 MS.gene21578:CDS 35.0%
ATGATCATGGACTCACATAT+CGG + chr1.3:62991839-62991858 None:intergenic 35.0%
ATTCAAGATTTCGGCAATTG+AGG - chr1.3:62992704-62992723 MS.gene21578:intron 35.0%
GAATTATGTTCAAGGATGCA+TGG - chr1.3:62992553-62992572 MS.gene21578:intron 35.0%
GATGATCGGAAGAAATTCTA+TGG - chr1.3:62992816-62992835 MS.gene21578:CDS 35.0%
GGGTTATATTGAAGAAGTTG+AGG + chr1.3:62991776-62991795 None:intergenic 35.0%
TAAACCATAAATGCAATCGG+GGG + chr1.3:62992947-62992966 None:intergenic 35.0%
TGATCGGAAGAAATTCTATG+GGG - chr1.3:62992818-62992837 MS.gene21578:CDS 35.0%
TGCCTATAAAATGATCACGA+TGG + chr1.3:62992031-62992050 None:intergenic 35.0%
! AGGTGAAACTACATGGATTT+TGG - chr1.3:62991660-62991679 MS.gene21578:CDS 35.0%
!! GGTTAAATATGTTGATGGCA+TGG - chr1.3:62991940-62991959 MS.gene21578:CDS 35.0%
CTTCACAACTTATGCTATGG+CGG + chr1.3:62992734-62992753 None:intergenic 40.0%
GACTCAAAGTTGTTGAGGAT+CGG - chr1.3:62992787-62992806 MS.gene21578:CDS 40.0%
GATCGGAAGAAATTCTATGG+GGG - chr1.3:62992819-62992838 MS.gene21578:CDS 40.0%
GCTCTTCACAACTTATGCTA+TGG + chr1.3:62992737-62992756 None:intergenic 40.0%
TTTCCATCATGAACTAGCAC+TGG + chr1.3:62991815-62991834 None:intergenic 40.0%
! GCTTTGTTATAGGGATCAGT+AGG + chr1.3:62991905-62991924 None:intergenic 40.0%
!! AAACTACACTAGCCTTACCT+TGG - chr1.3:62992052-62992071 MS.gene21578:intron 40.0%
!! GGGGTGTTTTCTTTTATGAC+TGG + chr1.3:62992987-62993006 None:intergenic 40.0%
AAGTTGTGAAGAGCGAGAGA+AGG - chr1.3:62992743-62992762 MS.gene21578:intron 45.0%
ACTCCAGTGCTAGTTCATGA+TGG - chr1.3:62991809-62991828 MS.gene21578:CDS 45.0%
ATGGCAGAGGTGAAACTACA+TGG - chr1.3:62991653-62991672 MS.gene21578:CDS 45.0%
GAAAAGCCACCAACTTCTCT+TGG + chr1.3:62993013-62993032 None:intergenic 45.0%
GTAGGAAGCAATGAGTTGTG+TGG + chr1.3:62991887-62991906 None:intergenic 45.0%
! ACAAAGCTCAAGCCCGATTT+TGG - chr1.3:62991918-62991937 MS.gene21578:CDS 45.0%
! ACTGGAGTATTCTTGCGTAC+TGG + chr1.3:62991797-62991816 None:intergenic 45.0%
! AGGATCGGTGTTTGGATGAT+CGG - chr1.3:62992802-62992821 MS.gene21578:CDS 45.0%
! AGTTGTTGAGGATCGGTGTT+TGG - chr1.3:62992794-62992813 MS.gene21578:CDS 45.0%
! CAAAGCTCAAGCCCGATTTT+GGG - chr1.3:62991919-62991938 MS.gene21578:CDS 45.0%
! CTGGAGTATTCTTGCGTACT+GGG + chr1.3:62991796-62991815 None:intergenic 45.0%
!! CGGGCTTGAGCTTTGTTATA+GGG + chr1.3:62991914-62991933 None:intergenic 45.0%
!! TCGGGCTTGAGCTTTGTTAT+AGG + chr1.3:62991915-62991934 None:intergenic 45.0%
!! ATATAATTTATCTTAATAAA+TGG - chr1.3:62992372-62992391 MS.gene21578:intron 5.0%
CACCAACTTCTCTTGGTCAG+GGG + chr1.3:62993006-62993025 None:intergenic 50.0%
CCACCAACTTCTCTTGGTCA+GGG + chr1.3:62993007-62993026 None:intergenic 50.0%
GGTTCCCCCGATTGCATTTA+TGG - chr1.3:62992940-62992959 MS.gene21578:CDS 50.0%
CACCCCTGACCAAGAGAAGT+TGG - chr1.3:62993001-62993020 MS.gene21578:CDS 55.0%
CCCTGACCAAGAGAAGTTGG+TGG - chr1.3:62993004-62993023 MS.gene21578:CDS 55.0%
GCCACCAACTTCTCTTGGTC+AGG + chr1.3:62993008-62993027 None:intergenic 55.0%
GGCGCGACTCAAAGTTGTTG+AGG - chr1.3:62992782-62992801 MS.gene21578:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 62991653 62993079 62991653 ID=MS.gene21578
chr1.3 mRNA 62991653 62993079 62991653 ID=MS.gene21578.t1;Parent=MS.gene21578
chr1.3 exon 62992771 62993079 62992771 ID=MS.gene21578.t1.exon1;Parent=MS.gene21578.t1
chr1.3 CDS 62992771 62993079 62992771 ID=cds.MS.gene21578.t1;Parent=MS.gene21578.t1
chr1.3 exon 62991653 62992021 62991653 ID=MS.gene21578.t1.exon2;Parent=MS.gene21578.t1
chr1.3 CDS 62991653 62992021 62991653 ID=cds.MS.gene21578.t1;Parent=MS.gene21578.t1
Gene Sequence

>MS.gene21578

ATGGCAGAGGTGAAACTACATGGATTTTGGTATAGTCCTTTTACTTTAAGGGTTGTATGGACCTTAAATCTAAAGGGTATACCTTATGAGAATATAGAGGAAGATCGTTTCAATAAAAGTCCTCAACTTCTTCAATATAACCCAGTACGCAAGAATACTCCAGTGCTAGTTCATGATGGAAAACCGATATGTGAGTCCATGATCATTGTTGAATACATTGATGAGATATGGCCACACAACTCATTGCTTCCTACTGATCCCTATAACAAAGCTCAAGCCCGATTTTGGGTTAAATATGTTGATGGCATGGTAAATTTTTCAAAACTTAATCAGCATATTTGTATTTTTACGTTTTACTTTTAATTTCAAGCCTTTCCATCGTGATCATTTTATAGGCAAAAACTACACTAGCCTTACCTTGGTCAAATTAGTTTTTTCAAAAGAAAAAAAAACTTAGTCAAATTTATCTTTAAAAATTGTTTACACCGTTGAATAAACACTTTCATTCTTAATCTACATTTGCTGTCACTGTATACATGATCGTAGAATCGTATACTGTTAAGAAATGTTTCACACTCCAGCAAAATTAGACTATCTTTGACTACAAGATCACGATTTTAGATAAAGTCCAGTAAGATTATGCTAATTTTGATGAATTAGATATTTTAATGTCATTATAATTTATGATATAATTTAGATGTTATCTTTATGAACTGAAGATATAATTTATCTTAATAAATGGTTAAGTAAAACGAAGATATAATTTATCTTAATAAATGGTTAAGTAAAACTTTTGTTAGCAAAAATAAGACAAAGTTAGTTTGGTCCAATATTATTGACGTTTTTAAACATAAATTACTAGCTAGACACGAAAGAAAAAAATGGCATTCTTAAAGAAATGAATTATGTTCAAGGATGCATGGTGTAGTGTTGCCTATTTTATAACTATAATCTATAACCAATTTACTTTGCCTTGTGTCTTATAAACATTACTACCTTACCTTATATACCATCGATATGATTCAAACTAACAACACTATTGGGATCAATAATTCAAGATTTCGGCAATTGAGGCATTCCGCCATAGCATAAGTTGTGAAGAGCGAGAGAAGGCTAAAGAGAATTTATGGGCGCGACTCAAAGTTGTTGAGGATCGGTGTTTGGATGATCGGAAGAAATTCTATGGGGGAGACACCATTAGCATTGTAGACATAACTCTTGGATCTTTTGTCAAATTTATTGAAGTTCAAGAAGATATATTTGAAGAGAATATCTTGCAAAGTGATAGGTTCCCCCGATTGCATTTATGGTTTAATAATTTCAAGGATTTTCCAGTCATAAAAGAAAACACCCCTGACCAAGAGAAGTTGGTGGCTTTTCATAATCTTCTAATTGAAAAAATCAAGGCAATCAAGACATCTTCTTGA
Protein sequence

>MS.gene21578.t1

MAEVKLHGFWYSPFTLRVVWTLNLKGIPYENIEEDRFNKSPQLLQYNPVRKNTPVLVHDGKPICESMIIVEYIDEIWPHNSLLPTDPYNKAQARFWVKYVDGMISAIEAFRHSISCEEREKAKENLWARLKVVEDRCLDDRKKFYGGDTISIVDITLGSFVKFIEVQEDIFEENILQSDRFPRLHLWFNNFKDFPVIKENTPDQEKLVAFHNLLIEKIKAIKTSS