AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059223


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059223.t1 MTR_4g025730 99.545 440 2 0 1 440 70 509 0.0 908
MS.gene059223.t1 MTR_4g025690 76.351 444 98 4 2 440 72 513 0.0 700
MS.gene059223.t1 MTR_8g104655 53.333 450 181 8 19 440 93 541 4.58e-166 478
MS.gene059223.t1 MTR_7g108905 51.068 468 197 10 1 436 85 552 3.65e-159 461
MS.gene059223.t1 MTR_4g035980 51.299 462 202 9 1 440 79 539 7.66e-156 452
MS.gene059223.t1 MTR_3g033690 50.658 456 207 9 1 440 73 526 4.96e-153 444
MS.gene059223.t1 MTR_3g008640 52.074 434 190 9 23 440 96 527 3.08e-152 442
MS.gene059223.t1 MTR_3g008720 51.843 434 191 9 23 440 96 527 2.49e-151 440
MS.gene059223.t1 MTR_7g053360 51.843 434 191 9 23 440 96 527 2.52e-151 440
MS.gene059223.t1 MTR_3g008700 51.843 434 191 9 23 440 96 527 1.33e-150 438
MS.gene059223.t1 MTR_8g104645 60.882 340 123 5 111 440 33 372 5.21e-149 428
MS.gene059223.t1 MTR_7g050870 49.891 459 203 10 5 440 100 554 2.19e-145 426
MS.gene059223.t1 MTR_4g025670 51.972 431 185 9 26 440 65 489 7.86e-145 422
MS.gene059223.t1 MTR_7g112580 49.220 449 190 10 22 440 102 542 6.76e-143 419
MS.gene059223.t1 MTR_7g050980 50.334 449 192 11 17 440 113 555 9.98e-143 419
MS.gene059223.t1 MTR_8g023310 49.359 468 194 11 14 440 124 589 3.20e-142 419
MS.gene059223.t1 MTR_4g087980 50.797 439 184 9 26 440 86 516 4.27e-142 416
MS.gene059223.t1 MTR_8g104580 47.661 449 175 9 19 440 85 500 3.08e-140 411
MS.gene059223.t1 MTR_2g044880 49.772 438 193 8 26 440 92 525 1.23e-139 410
MS.gene059223.t1 MTR_1g083520 50.340 441 185 10 29 440 93 528 7.35e-138 406
MS.gene059223.t1 MTR_7g050950 47.939 461 208 12 5 440 100 553 5.19e-137 404
MS.gene059223.t1 MTR_1g088020 48.554 484 193 14 10 440 75 555 7.47e-137 404
MS.gene059223.t1 MTR_3g091380 46.753 462 203 9 20 440 138 597 7.59e-137 405
MS.gene059223.t1 MTR_1g054880 49.462 465 183 14 26 440 96 558 1.78e-135 400
MS.gene059223.t1 MTR_1g008140 46.253 467 203 11 21 440 142 607 3.73e-135 402
MS.gene059223.t1 MTR_7g108900 48.077 468 188 13 26 440 95 560 1.73e-133 396
MS.gene059223.t1 MTR_1g088225 48.140 484 193 15 10 440 75 553 1.64e-132 393
MS.gene059223.t1 MTR_7g108875 48.180 467 187 13 26 440 101 564 5.92e-130 387
MS.gene059223.t1 MTR_7g108890 49.650 429 174 9 53 440 135 562 8.14e-130 386
MS.gene059223.t1 MTR_3g010780 46.855 461 206 11 10 440 123 574 2.70e-129 385
MS.gene059223.t1 MTR_8g042910 47.158 475 192 12 23 440 140 612 1.19e-127 382
MS.gene059223.t1 MTR_8g042900 48.980 441 197 13 24 440 145 581 3.64e-127 380
MS.gene059223.t1 MTR_4g087970 45.701 442 206 8 26 440 83 517 1.80e-126 376
MS.gene059223.t1 MTR_4g124520 48.020 404 189 10 53 440 123 521 1.52e-121 364
MS.gene059223.t1 MTR_0458s0030 64.639 263 89 3 181 440 53 314 1.52e-121 356
MS.gene059223.t1 MTR_1g088040 64.639 263 89 3 181 440 53 314 1.52e-121 356
MS.gene059223.t1 MTR_2g044810 44.321 449 223 11 12 440 93 534 1.18e-119 359
MS.gene059223.t1 MTR_4g124550 43.043 460 223 10 17 440 137 593 8.74e-119 359
MS.gene059223.t1 MTR_3g010770 55.287 331 136 6 121 440 246 575 7.64e-118 356
MS.gene059223.t1 MTR_1g086210 40.385 468 230 10 21 440 103 569 7.72e-113 343
MS.gene059223.t1 MTR_0618s0020 66.960 227 72 2 217 440 2 228 1.23e-111 328
MS.gene059223.t1 MTR_1g083510 39.545 483 241 13 7 439 101 582 2.91e-103 319
MS.gene059223.t1 MTR_8g023150 43.873 408 208 8 53 440 176 582 3.09e-102 316
MS.gene059223.t1 MTR_1g086190 39.693 456 234 12 24 440 110 563 1.43e-101 314
MS.gene059223.t1 MTR_7g110560 40.088 454 227 13 24 440 104 549 8.47e-100 309
MS.gene059223.t1 MTR_7g110490 39.270 466 227 10 24 435 106 569 8.52e-100 310
MS.gene059223.t1 MTR_7g110510 39.270 466 227 10 24 435 106 569 8.52e-100 310
MS.gene059223.t1 MTR_3g095920 41.556 450 217 14 30 439 120 563 2.18e-99 308
MS.gene059223.t1 MTR_2g044660 47.305 334 167 7 111 440 304 632 2.07e-98 308
MS.gene059223.t1 MTR_1g083470 37.931 464 228 13 19 436 117 566 1.10e-97 304
MS.gene059223.t1 MTR_1g083500 37.931 464 228 13 19 436 117 566 1.10e-97 304
MS.gene059223.t1 MTR_8g093460 41.055 436 215 12 30 429 111 540 1.19e-97 303
MS.gene059223.t1 MTR_7g110440 37.367 471 239 10 24 440 106 574 3.27e-97 303
MS.gene059223.t1 MTR_7g112590 37.577 487 254 14 1 439 98 582 6.51e-96 300
MS.gene059223.t1 MTR_4g005170 37.885 454 242 13 19 436 122 571 3.43e-95 299
MS.gene059223.t1 MTR_2g044810 54.980 251 109 3 193 440 216 465 2.74e-94 292
MS.gene059223.t1 MTR_1g083490 37.307 453 246 12 19 436 122 571 4.63e-94 295
MS.gene059223.t1 MTR_4g005180 36.422 464 235 13 19 436 104 553 3.56e-91 287
MS.gene059223.t1 MTR_4g120290 36.980 457 243 13 24 439 119 571 5.29e-89 282
MS.gene059223.t1 MTR_4g120280 36.543 457 245 12 24 439 119 571 9.50e-88 278
MS.gene059223.t1 MTR_2g436050 37.556 450 245 14 24 439 116 563 1.30e-86 275
MS.gene059223.t1 MTR_2g436040 34.921 441 258 10 24 437 105 543 1.48e-86 276
MS.gene059223.t1 MTR_8g088610 43.917 337 169 10 113 437 45 373 1.34e-84 264
MS.gene059223.t1 MTR_7g110420 34.568 486 244 12 24 440 106 586 3.34e-81 261
MS.gene059223.t1 MTR_0458s0010 38.320 488 200 18 10 440 75 518 1.53e-79 255
MS.gene059223.t1 MTR_5g083620 40.762 341 189 8 110 440 19 356 1.10e-78 248
MS.gene059223.t1 MTR_7g110430 32.906 468 230 9 24 440 106 540 3.12e-78 253
MS.gene059223.t1 MTR_7g107180 41.139 316 170 7 131 440 2 307 2.24e-72 230
MS.gene059223.t1 MTR_2g105560 40.705 312 167 7 135 440 40 339 2.32e-71 229
MS.gene059223.t1 MTR_7g111560 31.788 453 271 14 17 440 113 556 6.11e-67 223
MS.gene059223.t1 MTR_2g039530 40.594 303 162 8 110 406 28 318 6.10e-58 194
MS.gene059223.t1 MTR_6g024165 37.072 321 176 10 121 429 28 334 1.10e-52 180
MS.gene059223.t1 MTR_6g088810 39.735 302 152 9 144 429 90 377 7.27e-52 179
MS.gene059223.t1 MTR_6g012800 35.644 303 167 9 136 423 6 295 4.96e-50 172
MS.gene059223.t1 MTR_8g102380 38.614 303 156 10 144 429 88 377 7.26e-50 174
MS.gene059223.t1 MTR_6g042660 34.909 275 156 7 136 402 37 296 4.93e-46 162
MS.gene059223.t1 MTR_7g011530 34.091 308 176 8 138 429 8 304 9.14e-46 161
MS.gene059223.t1 MTR_5g083590 31.529 314 158 7 134 440 5 268 1.06e-44 157
MS.gene059223.t1 MTR_1g086540 32.919 322 189 8 121 429 37 344 1.29e-44 159
MS.gene059223.t1 MTR_7g092780 31.548 336 198 8 108 429 70 387 3.59e-44 159
MS.gene059223.t1 MTR_2g033970 32.063 315 191 8 125 429 45 346 4.16e-41 149
MS.gene059223.t1 MTR_8g102380 39.676 247 122 8 144 373 88 324 1.38e-40 147
MS.gene059223.t1 MTR_6g042690 32.624 282 162 7 134 402 37 303 2.06e-39 144
MS.gene059223.t1 MTR_1g033050 30.573 314 187 8 131 433 13 306 2.47e-39 144
MS.gene059223.t1 MTR_5g095490 33.225 307 170 8 142 429 67 357 3.19e-38 142
MS.gene059223.t1 MTR_5g093970 33.115 305 181 9 136 432 43 332 1.15e-37 140
MS.gene059223.t1 MTR_4g124740 31.366 322 184 10 124 429 39 339 3.88e-36 136
MS.gene059223.t1 MTR_5g088300 30.537 298 189 6 136 431 37 318 5.02e-35 132
MS.gene059223.t1 MTR_2g436600 32.333 300 169 11 141 429 60 336 9.40e-35 132
MS.gene059223.t1 MTR_7g102600 31.169 308 185 7 138 431 101 395 2.15e-34 132
MS.gene059223.t1 MTR_5g012600 29.808 312 192 8 136 432 63 362 2.15e-33 129
MS.gene059223.t1 MTR_5g088280 29.866 298 191 6 136 431 39 320 3.84e-32 125
MS.gene059223.t1 MTR_5g088290 30.263 304 183 9 136 431 48 330 1.08e-31 124
MS.gene059223.t1 MTR_4g074290 29.063 320 193 11 125 429 61 361 1.35e-31 124
MS.gene059223.t1 MTR_8g036225 27.869 305 194 6 136 429 33 322 1.83e-31 123
MS.gene059223.t1 MTR_2g073390 27.049 366 231 13 81 429 15 361 6.76e-31 122
MS.gene059223.t1 MTR_4g051810 30.565 301 186 8 136 431 37 319 7.62e-31 121
MS.gene059223.t1 MTR_0009s0350 28.981 314 201 9 125 429 61 361 1.09e-29 119
MS.gene059223.t1 MTR_0009s0340 28.981 314 201 9 125 429 61 361 1.09e-29 119
MS.gene059223.t1 MTR_6g025590 36.158 177 100 5 121 286 36 210 2.83e-22 95.5
MS.gene059223.t1 MTR_0408s0030 37.895 95 52 1 308 402 36 123 1.09e-16 77.4
MS.gene059223.t1 MTR_2g436070 29.565 230 133 9 2 204 94 321 3.46e-15 77.0
MS.gene059223.t1 MTR_6g024200 34.591 159 83 7 273 429 137 276 2.36e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059223.t1 AT2G45220 70.562 445 122 6 1 440 71 511 0.0 643
MS.gene059223.t1 AT5G51490 53.219 466 188 10 1 440 75 536 2.64e-165 476
MS.gene059223.t1 AT5G51500 51.940 464 197 9 1 440 79 540 2.17e-156 453
MS.gene059223.t1 AT4G00190 51.339 448 195 7 1 440 42 474 5.02e-154 445
MS.gene059223.t1 AT3G47400 50.429 466 205 9 1 440 129 594 1.13e-152 446
MS.gene059223.t1 AT1G23200 50.000 460 179 8 25 440 102 554 3.35e-150 438
MS.gene059223.t1 AT3G59010 50.926 432 185 5 29 440 104 528 1.90e-141 415
MS.gene059223.t1 AT1G11580 50.682 440 196 9 22 440 118 557 4.41e-141 415
MS.gene059223.t1 AT1G11580 50.682 440 196 9 22 440 139 578 8.65e-141 415
MS.gene059223.t1 AT5G53370 48.337 451 202 7 21 440 135 585 1.45e-140 415
MS.gene059223.t1 AT5G53370 48.337 451 202 7 21 440 171 621 4.66e-140 415
MS.gene059223.t1 AT3G49220 48.889 450 199 9 21 440 148 596 6.33e-140 414
MS.gene059223.t1 AT3G49220 48.889 450 199 9 21 440 193 641 2.31e-139 414
MS.gene059223.t1 AT3G14310 48.211 475 190 11 20 440 120 592 8.21e-138 408
MS.gene059223.t1 AT3G43270 47.884 449 197 9 26 440 80 525 1.98e-136 402
MS.gene059223.t1 AT4G02320 47.216 449 208 10 20 440 71 518 5.25e-136 400
MS.gene059223.t1 AT1G53830 48.504 468 191 11 20 440 123 587 7.04e-136 403
MS.gene059223.t1 AT3G05620 46.822 472 208 11 2 440 80 541 8.86e-136 401
MS.gene059223.t1 AT3G60730 45.395 456 208 8 24 440 66 519 7.77e-133 392
MS.gene059223.t1 AT4G33220 45.887 462 197 9 26 440 68 523 9.83e-131 387
MS.gene059223.t1 AT2G43050 48.826 426 195 9 29 440 100 516 1.51e-130 387
MS.gene059223.t1 AT4G02300 45.372 443 217 8 23 440 90 532 7.79e-128 380
MS.gene059223.t1 AT2G47550 49.567 462 184 13 26 440 99 558 1.28e-127 380
MS.gene059223.t1 AT4G02330 47.738 442 173 12 53 440 134 571 2.76e-127 380
MS.gene059223.t1 AT1G02810 48.330 449 163 13 55 440 135 577 8.09e-125 374
MS.gene059223.t1 AT4G33220 54.491 334 144 5 113 440 71 402 2.71e-124 367
MS.gene059223.t1 AT2G26450 44.273 454 224 13 13 440 161 611 6.28e-119 360
MS.gene059223.t1 AT5G04960 43.807 436 220 9 25 438 130 562 4.10e-118 357
MS.gene059223.t1 AT5G20860 43.981 432 216 9 30 440 112 538 8.46e-118 355
MS.gene059223.t1 AT3G10710 45.977 435 202 10 30 440 136 561 3.98e-116 351
MS.gene059223.t1 AT5G49180 45.012 411 194 10 55 436 159 566 9.21e-114 345
MS.gene059223.t1 AT3G10720 43.750 480 212 13 16 440 139 615 1.07e-113 347
MS.gene059223.t1 AT3G05610 40.618 453 236 12 19 440 115 565 1.09e-113 348
MS.gene059223.t1 AT2G26440 42.444 450 224 10 23 440 101 547 6.33e-113 342
MS.gene059223.t1 AT4G33230 42.888 464 227 12 12 440 146 606 1.71e-111 341
MS.gene059223.t1 AT5G04970 42.620 481 216 13 16 440 144 620 4.25e-110 338
MS.gene059223.t1 AT5G27870 39.024 451 244 11 19 440 114 562 1.23e-109 340
MS.gene059223.t1 AT1G11590 42.892 415 226 7 37 440 110 524 1.38e-106 325
MS.gene059223.t1 AT3G06830 39.309 463 232 13 19 438 110 566 1.90e-106 327
MS.gene059223.t1 AT4G03930 42.651 415 227 7 37 440 110 524 2.10e-106 325
MS.gene059223.t1 AT3G27980 42.786 402 204 6 55 440 106 497 9.28e-106 322
MS.gene059223.t1 AT3G10720 57.308 260 107 3 184 440 1 259 8.56e-104 309
MS.gene059223.t1 AT1G53840 40.733 464 224 13 14 434 126 581 2.27e-102 317
MS.gene059223.t1 AT4G15980 46.705 349 176 7 99 438 353 700 1.82e-101 318
MS.gene059223.t1 AT4G15980 46.705 349 176 7 99 438 363 710 4.92e-101 317
MS.gene059223.t1 AT3G14300 41.216 444 215 11 24 429 523 958 5.82e-99 317
MS.gene059223.t1 AT5G64640 40.090 444 221 13 30 433 164 602 1.83e-95 299
MS.gene059223.t1 AT5G09760 40.596 436 217 13 30 428 116 546 3.85e-93 291
MS.gene059223.t1 AT5G09760 40.596 436 217 13 30 428 142 572 7.77e-93 291
MS.gene059223.t1 AT5G20860 40.452 398 184 8 30 406 112 477 9.59e-92 287
MS.gene059223.t1 AT2G47030 43.391 348 176 8 112 440 243 588 6.67e-83 266
MS.gene059223.t1 AT2G47040 43.188 345 178 8 112 440 253 595 6.14e-80 258
MS.gene059223.t1 AT3G62170 40.730 356 182 8 112 440 235 588 2.89e-78 254
MS.gene059223.t1 AT1G11370 49.187 246 119 4 133 372 43 288 1.91e-74 235
MS.gene059223.t1 AT5G19730 37.171 304 165 8 140 429 90 381 2.05e-48 170
MS.gene059223.t1 AT3G29090 35.789 285 162 5 131 402 2 278 9.99e-48 166
MS.gene059223.t1 AT3G17060 32.492 317 187 8 125 429 35 336 1.06e-44 159
MS.gene059223.t1 AT1G05310 33.038 339 195 9 105 429 68 388 3.16e-44 159
MS.gene059223.t1 AT2G36700 32.667 300 184 5 138 429 44 333 7.50e-44 156
MS.gene059223.t1 AT1G44980 43.617 188 101 3 114 296 54 241 1.33e-40 145
MS.gene059223.t1 AT2G36710 32.704 318 185 11 133 434 86 390 1.57e-40 149
MS.gene059223.t1 AT5G18990 34.737 285 164 6 131 402 24 299 7.46e-39 143
MS.gene059223.t1 AT2G21610 30.100 299 187 7 136 429 51 332 2.21e-38 142
MS.gene059223.t1 AT2G21610 30.100 299 187 7 136 429 56 337 2.40e-38 142
MS.gene059223.t1 AT2G19150 31.889 323 190 10 128 436 33 339 6.57e-37 138
MS.gene059223.t1 AT5G55590 32.686 309 181 9 136 429 82 378 7.50e-37 139
MS.gene059223.t1 AT3G24130 32.509 283 169 6 133 402 31 304 2.30e-36 136
MS.gene059223.t1 AT5G47500 28.267 329 198 8 116 429 52 357 1.21e-35 135
MS.gene059223.t1 AT5G07430 29.067 375 229 14 71 429 2 355 2.35e-35 134
MS.gene059223.t1 AT5G26810 30.793 328 197 10 122 431 20 335 3.52e-35 133
MS.gene059223.t1 AT5G55590 34.783 253 141 8 136 373 82 325 5.06e-34 130
MS.gene059223.t1 AT3G49220 36.073 219 112 7 21 212 193 410 3.20e-31 124
MS.gene059223.t1 AT2G47280 30.744 309 183 8 136 429 35 327 4.19e-31 122
MS.gene059223.t1 AT2G19150 32.558 258 151 8 128 373 33 279 8.43e-30 117
MS.gene059223.t1 AT5G07420 28.152 341 213 10 107 429 29 355 3.02e-29 117
MS.gene059223.t1 AT5G61680 28.205 312 199 9 129 429 61 358 9.79e-27 110
MS.gene059223.t1 AT5G07410 26.453 344 226 10 99 429 26 355 1.07e-26 110
MS.gene059223.t1 AT1G69940 26.216 370 243 12 75 429 1 355 6.83e-26 108

Find 97 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTATAATTCATAATTCT+AGG 0.221921 4.1:-73159132 MS.gene059223:CDS
GGCACAGTTGATTTCATCTT+TGG 0.238399 4.1:-73159262 MS.gene059223:CDS
TTCATGAAAACTGTTCTTGA+TGG 0.322264 4.1:-73159028 MS.gene059223:CDS
TACAGAGAATGTAACATCTA+TGG 0.343919 4.1:-73159283 MS.gene059223:CDS
AAGCTGTACTAAGCCATGTT+TGG 0.344214 4.1:+73161609 None:intergenic
CAAGCTGTTGCATTTCGTTC+CGG 0.356258 4.1:-73159385 MS.gene059223:CDS
CAGGTTCATCCACTTCAAAC+AGG 0.356739 4.1:-73158919 MS.gene059223:CDS
ACCGTTGGGAATTTCATTGC+CGG 0.366873 4.1:-73158842 MS.gene059223:CDS
GAATATGCTAATACAGGTTC+AGG 0.371500 4.1:-73158938 MS.gene059223:CDS
AGCTGTACTAAGCCATGTTT+GGG 0.379379 4.1:+73161610 None:intergenic
ATTTCATTGCCGGTAATTCA+TGG 0.379520 4.1:-73158832 MS.gene059223:CDS
CATCTTTGTAACTTGGTTGT+TGG 0.388751 4.1:+73161459 None:intergenic
GTTTCCTATCCATGAATTAC+CGG 0.395370 4.1:+73158823 None:intergenic
CATCGTTGCTAAGGATGGTT+CGG 0.413134 4.1:-73161363 MS.gene059223:CDS
TCTTGTGGGCTACGGCACTT+AGG 0.413550 4.1:+73161725 None:intergenic
TTGTAACTTGGTTGTTGGTA+AGG 0.414505 4.1:+73161464 None:intergenic
TTCTAGGGTTTCCGCTCAAT+CGG 0.419321 4.1:-73159116 MS.gene059223:CDS
TTTGCAGCTGCTACTGGTGA+TGG 0.425142 4.1:-73159460 MS.gene059223:intron
CCACTTCAAACAGGGTTACA+TGG 0.430901 4.1:-73158910 MS.gene059223:CDS
CATGGGTTAAACCTGGTGAT+AGG 0.443867 4.1:-73161427 MS.gene059223:CDS
AACTTCTTCCGCGGCTTCGA+AGG 0.447444 4.1:-73161393 MS.gene059223:CDS
CTTGTGGGCTACGGCACTTA+GGG 0.460985 4.1:+73161726 None:intergenic
TATGCTGAATATGCTAATAC+AGG 0.469023 4.1:-73158944 MS.gene059223:CDS
CAAGCTTCACCTTTCACCGT+TGG 0.471593 4.1:-73158857 MS.gene059223:CDS
AAGCTTCACCTTTCACCGTT+GGG 0.472202 4.1:-73158856 MS.gene059223:CDS
ATGAAATTCCCAACGGTGAA+AGG 0.479388 4.1:+73158848 None:intergenic
CAACAACCAAGTTACAAAGA+TGG 0.480845 4.1:-73161458 MS.gene059223:CDS
CCCTGCTGGTTGGTTACCAT+GGG 0.482029 4.1:-73158996 MS.gene059223:CDS
TCCTTGCGCGGTAACTGTGA+TGG 0.482943 4.1:+73159180 None:intergenic
TCGTTCCGGCTCCGATCTAT+CGG 0.484411 4.1:-73159371 MS.gene059223:CDS
AATTATAATTCATAATTCTA+GGG 0.485667 4.1:-73159131 MS.gene059223:CDS
ACAGGCGTGCCATTCACCTC+TGG 0.485673 4.1:-73158800 MS.gene059223:CDS
GCAAAGAATGTCATGTTGGT+TGG 0.492347 4.1:-73161233 MS.gene059223:CDS
GGAAATCCATCTTTGTAACT+TGG 0.499245 4.1:+73161452 None:intergenic
ATCGTTGCTAAGGATGGTTC+GGG 0.500354 4.1:-73161362 MS.gene059223:CDS
ATTGCCGGTAATTCATGGAT+AGG 0.500552 4.1:-73158827 MS.gene059223:CDS
TCCCATGGTAACCAACCAGC+AGG 0.502238 4.1:+73158995 None:intergenic
ACCCTGCTGGTTGGTTACCA+TGG 0.509749 4.1:-73158997 MS.gene059223:CDS
GGTACGATTTAACAGAGCTA+GGG 0.515662 4.1:+73159086 None:intergenic
GATGCTGCACCAAGTGGTAG+TGG 0.515780 4.1:-73161311 MS.gene059223:CDS
GGCTAATGTCATCGTTGCTA+AGG 0.521136 4.1:-73161372 MS.gene059223:CDS
AGGTACGATTTAACAGAGCT+AGG 0.534156 4.1:+73159085 None:intergenic
ATTGGTAAAACCATAATCAC+TGG 0.538242 4.1:-73161203 MS.gene059223:CDS
TCACCAGGTTTAACCCATGT+TGG 0.540325 4.1:+73161431 None:intergenic
TGAAGAAGTTTCCTATCACC+AGG 0.540939 4.1:+73161416 None:intergenic
ATCACTGGTAGCAAAAGTGT+TGG 0.542034 4.1:-73161188 MS.gene059223:CDS
ATCACATTTAGAAATACAGC+TGG 0.542321 4.1:-73159421 MS.gene059223:CDS
ACCATCACAGTTACCGCGCA+AGG 0.543990 4.1:-73159181 MS.gene059223:CDS
CCATGTAACCCTGTTTGAAG+TGG 0.545231 4.1:+73158910 None:intergenic
TCAAACAGGGTTACATGGAA+AGG 0.546301 4.1:-73158905 MS.gene059223:CDS
TTTGTAAAATACCGATAGAT+CGG 0.549087 4.1:+73159360 None:intergenic
TAAAGCAAAGAATGTCATGT+TGG 0.552893 4.1:-73161237 MS.gene059223:CDS
ATGTTGGTTGGAGATGGTAT+TGG 0.553011 4.1:-73161221 MS.gene059223:CDS
ACAAAGATGGATTTCCAACA+TGG 0.557740 4.1:-73161445 MS.gene059223:CDS
AATGTCATCGTTGCTAAGGA+TGG 0.561876 4.1:-73161368 MS.gene059223:CDS
ACTGGTAGCAAAAGTGTTGG+AGG 0.563435 4.1:-73161185 MS.gene059223:CDS
ACCGATCCAAATCAAAACAC+TGG 0.569193 4.1:-73159154 MS.gene059223:CDS
CACAATATGAATCCCAAACA+TGG 0.578929 4.1:-73161622 MS.gene059223:CDS
AAATACCGATAGATCGGAGC+CGG 0.582499 4.1:+73159366 None:intergenic
GCTTAAAGTCCAGAGGTGAA+TGG 0.586097 4.1:+73158791 None:intergenic
TTTCCAACATGGGTTAAACC+TGG 0.589586 4.1:-73161434 MS.gene059223:CDS
AATGTCATGTTGGTTGGAGA+TGG 0.590411 4.1:-73161227 MS.gene059223:CDS
GTTACATTATTAGACAACAA+AGG 0.594044 4.1:+73161524 None:intergenic
ACTTTCCGTTCAGCAACCGT+TGG 0.594941 4.1:-73161152 MS.gene059223:intron
CGGAACGAAATGCAACAGCT+TGG 0.595802 4.1:+73159386 None:intergenic
TATGTGATATATGTGAAGGC+TGG 0.599695 4.1:-73161284 MS.gene059223:CDS
GGGCAAGTACACGACGGTGA+AGG 0.602626 4.1:-73161342 MS.gene059223:CDS
GCTGGTTGGTTACCATGGGA+TGG 0.604546 4.1:-73158992 MS.gene059223:CDS
CTGCACCAAGTGGTAGTGGA+AGG 0.608150 4.1:-73161307 MS.gene059223:CDS
GACATTAGCCTTCGAAGCCG+CGG 0.611455 4.1:+73161385 None:intergenic
AAAGCAAAATTACCATCCCA+TGG 0.612268 4.1:+73158980 None:intergenic
CACGACGGTGAAGGCCGCGA+CGG 0.612289 4.1:-73161333 MS.gene059223:CDS
AGGTTCATCCACTTCAAACA+GGG 0.619005 4.1:-73158918 MS.gene059223:CDS
TAACACCTTGTCACTCAACA+AGG 0.624473 4.1:-73161489 MS.gene059223:CDS
AGCTCTGTTAAATCGTACCT+TGG 0.625217 4.1:-73159082 MS.gene059223:CDS
ACTTACCAACGGTTGCTGAA+CGG 0.626940 4.1:+73161147 None:intergenic
CAAAGATGGATTTCCAACAT+GGG 0.627787 4.1:-73161444 MS.gene059223:CDS
ACTTCTTCAAACTTCTTCCG+CGG 0.630906 4.1:-73161402 MS.gene059223:CDS
AGGGTTTAAATCCGATTGAG+CGG 0.635907 4.1:+73159105 None:intergenic
ACATACCTTCCACTACCACT+TGG 0.638708 4.1:+73161302 None:intergenic
GGTAGCAAAAGTGTTGGAGG+TGG 0.640198 4.1:-73161182 MS.gene059223:CDS
GTGAAGCACTAGTAAGAACA+TGG 0.641780 4.1:+73158879 None:intergenic
GAAGAAAATACACATGCACT+TGG 0.644990 4.1:-73161749 MS.gene059223:CDS
TGGATCGGTTCTTCCTTGCG+CGG 0.648642 4.1:+73159168 None:intergenic
AAGGTATGTGATATATGTGA+AGG 0.653633 4.1:-73161288 MS.gene059223:CDS
AGGAACCTTGTTGAGTGACA+AGG 0.656613 4.1:+73161484 None:intergenic
GCGACGGATGCTGCACCAAG+TGG 0.664715 4.1:-73161317 MS.gene059223:CDS
GGTTGCTGAACGGAAAGTAG+TGG 0.670011 4.1:+73161157 None:intergenic
CCCATGGTAACCAACCAGCA+GGG 0.670836 4.1:+73158996 None:intergenic
ACCGGCAATGAAATTCCCAA+CGG 0.671958 4.1:+73158841 None:intergenic
AATTCATGGATAGGAAACAC+AGG 0.687418 4.1:-73158818 MS.gene059223:CDS
AAGGAACGCTTAAAGTCCAG+AGG 0.689657 4.1:+73158784 None:intergenic
ACTTGGTGCAGCATCCGTCG+CGG 0.690402 4.1:+73161319 None:intergenic
AGACATAGTTTGTGACACCA+AGG 0.696122 4.1:+73161549 None:intergenic
AATCGTACCTTGGTAGACCG+TGG 0.701912 4.1:-73159072 MS.gene059223:CDS
TTTCATCTTTGGTAACGCCG+CGG 0.758063 4.1:-73159251 MS.gene059223:CDS
TGGTTCGGGCAAGTACACGA+CGG 0.758627 4.1:-73161348 MS.gene059223:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATATTTAAATTAA+TGG + chr4.1:73159757-73159776 None:intergenic 0.0%
!! AAATAAATAATTATATCAGT+AGG - chr4.1:73160030-73160049 MS.gene059223:intron 10.0%
!! AAATATAACAAATAACTTAA+AGG + chr4.1:73159908-73159927 None:intergenic 10.0%
!! AATAAATAATTATATCAGTA+GGG - chr4.1:73160031-73160050 MS.gene059223:intron 10.0%
!! AATTATAATTCATAATTCTA+GGG - chr4.1:73161432-73161451 MS.gene059223:CDS 10.0%
!! ATTTCTTAATCATTAAATTA+AGG + chr4.1:73160377-73160396 None:intergenic 10.0%
!! TTTCTTAATCATTAAATTAA+GGG + chr4.1:73160376-73160395 None:intergenic 10.0%
!! ACTTTAACTAATTTCTTAAT+TGG - chr4.1:73160751-73160770 MS.gene059223:intron 15.0%
!! ATAAATAATTATATCAGTAG+GGG - chr4.1:73160032-73160051 MS.gene059223:intron 15.0%
!! GAATAATTATTTATATCCTT+TGG + chr4.1:73160242-73160261 None:intergenic 15.0%
!! GAATTATAATTCATAATTCT+AGG - chr4.1:73161431-73161450 MS.gene059223:CDS 15.0%
!! TTAAGATAATATATCATAGA+AGG + chr4.1:73160313-73160332 None:intergenic 15.0%
!! TTAAGGAAAAATATTAATCT+AGG + chr4.1:73160699-73160718 None:intergenic 15.0%
!! TTCAATTAAATCAATTATTG+TGG + chr4.1:73160408-73160427 None:intergenic 15.0%
!! TTTAATTAAAAGAAGAATGT+GGG - chr4.1:73160850-73160869 MS.gene059223:intron 15.0%
!!! AGATTAATATTTTTCCTTAA+TGG - chr4.1:73160699-73160718 MS.gene059223:intron 15.0%
!!! ATTACTTTAAAATCTCTTTA+CGG - chr4.1:73160286-73160305 MS.gene059223:intron 15.0%
!!! ATTCAATTCATTATGTTTTT+GGG + chr4.1:73160444-73160463 None:intergenic 15.0%
!!! TATTCAATTCATTATGTTTT+TGG + chr4.1:73160445-73160464 None:intergenic 15.0%
!!! TATTTACAAAAAAAAAGTGT+TGG - chr4.1:73159866-73159885 MS.gene059223:intron 15.0%
!! AAAATTAATTTAACCCTAGA+TGG + chr4.1:73159843-73159862 None:intergenic 20.0%
!! CTAGTTTATGATTTAGTTAT+TGG + chr4.1:73159603-73159622 None:intergenic 20.0%
!! CTTTAATTAAAAGAAGAATG+TGG - chr4.1:73160849-73160868 MS.gene059223:intron 20.0%
!! GAAAATTACTTATGAATGAT+AGG - chr4.1:73159792-73159811 MS.gene059223:intron 20.0%
!! GAATAAGACTATATTAAAGT+GGG + chr4.1:73160818-73160837 None:intergenic 20.0%
!! TATGATTTGAATCATTTACA+TGG - chr4.1:73160503-73160522 MS.gene059223:intron 20.0%
!! TGAATAAGACTATATTAAAG+TGG + chr4.1:73160819-73160838 None:intergenic 20.0%
!! TTAATTAAAAGAAGAATGTG+GGG - chr4.1:73160851-73160870 MS.gene059223:intron 20.0%
!! TTCAACTGATTATTAACTTA+TGG + chr4.1:73160894-73160913 None:intergenic 20.0%
!!! ACTTATTTTATTTCCATCTA+GGG - chr4.1:73159827-73159846 MS.gene059223:intron 20.0%
!!! AGATTTTAAAGTAATCACAA+TGG + chr4.1:73160281-73160300 None:intergenic 20.0%
!!! ATCATAGTCTAAAACTTTAT+TGG + chr4.1:73160489-73160508 None:intergenic 20.0%
!!! CACATTCTTCTTTTAATTAA+AGG + chr4.1:73160851-73160870 None:intergenic 20.0%
!!! TACTTATTTTATTTCCATCT+AGG - chr4.1:73159826-73159845 MS.gene059223:intron 20.0%
!!! TGAATGAACTTTTTTTTTCT+TGG + chr4.1:73159571-73159590 None:intergenic 20.0%
!!! TGCATAAGATTTTTCAATAA+AGG + chr4.1:73159633-73159652 None:intergenic 20.0%
! ACATAATGAATTGAATATCG+TGG - chr4.1:73160448-73160467 MS.gene059223:intron 25.0%
! ACTTATGAATGATAGGTAAA+CGG - chr4.1:73159799-73159818 MS.gene059223:intron 25.0%
! ATTATCTACTTTCTTACTCA+AGG + chr4.1:73160216-73160235 None:intergenic 25.0%
! GTTACATTATTAGACAACAA+AGG + chr4.1:73159042-73159061 None:intergenic 25.0%
! TATGTAGCTTTCAAAAATGA+AGG - chr4.1:73160542-73160561 MS.gene059223:intron 25.0%
! TTTAGTAGTCAAATCTTTAG+AGG - chr4.1:73160615-73160634 MS.gene059223:intron 25.0%
! TTTGTAAAATACCGATAGAT+CGG + chr4.1:73161206-73161225 None:intergenic 25.0%
!! ATTTGCGAACTTTTCTTTAA+GGG + chr4.1:73159497-73159516 None:intergenic 25.0%
!! CAGGTAAGAACTTTTTAATA+AGG + chr4.1:73159542-73159561 None:intergenic 25.0%
!! CTTTAAGGGATAAACTTTAA+GGG + chr4.1:73159483-73159502 None:intergenic 25.0%
!! TATTTGCGAACTTTTCTTTA+AGG + chr4.1:73159498-73159517 None:intergenic 25.0%
!! TCTTTAAGGGATAAACTTTA+AGG + chr4.1:73159484-73159503 None:intergenic 25.0%
!!! AAAAATGGATTTTATGACCT+TGG - chr4.1:73158997-73159016 MS.gene059223:CDS 25.0%
!!! ATAATTCCAGTGTTTTGATT+TGG + chr4.1:73161418-73161437 None:intergenic 25.0%
!!! CTGCTTGCTTTTATATAATT+AGG + chr4.1:73160337-73160356 None:intergenic 25.0%
AACCTTGAAACATGCAAAAA+TGG - chr4.1:73158982-73159001 MS.gene059223:CDS 30.0%
AAGGGATAAAAAAAGCTGTA+CGG + chr4.1:73159465-73159484 None:intergenic 30.0%
AAGGTATGTGATATATGTGA+AGG - chr4.1:73159275-73159294 MS.gene059223:CDS 30.0%
ATCACATTTAGAAATACAGC+TGG - chr4.1:73161142-73161161 MS.gene059223:intron 30.0%
ATTGGTAAAACCATAATCAC+TGG - chr4.1:73159360-73159379 MS.gene059223:CDS 30.0%
CACATAGGAAACTATATATG+CGG + chr4.1:73160726-73160745 None:intergenic 30.0%
CTAGGATGATTTATTCTAGA+GGG + chr4.1:73160681-73160700 None:intergenic 30.0%
CTTATGAATGATAGGTAAAC+GGG - chr4.1:73159800-73159819 MS.gene059223:intron 30.0%
CTTTAGATTTGTGTGGTATA+TGG - chr4.1:73160159-73160178 MS.gene059223:intron 30.0%
GAAAGTAGATAATAGACCAA+AGG - chr4.1:73160223-73160242 MS.gene059223:intron 30.0%
GGCTTTCTATATGTTATAGT+CGG + chr4.1:73160649-73160668 None:intergenic 30.0%
TAAAGCAAAGAATGTCATGT+TGG - chr4.1:73159326-73159345 MS.gene059223:CDS 30.0%
TACAGAGAATGTAACATCTA+TGG - chr4.1:73161280-73161299 MS.gene059223:CDS 30.0%
TATGCTGAATATGCTAATAC+AGG - chr4.1:73161619-73161638 MS.gene059223:CDS 30.0%
TGAGAAGCTATGTATAACAA+CGG - chr4.1:73160076-73160095 MS.gene059223:intron 30.0%
TGCTTAGAAAGTTAACTAGT+CGG - chr4.1:73159660-73159679 MS.gene059223:intron 30.0%
TGTTAAGGTTGCATATCTTA+TGG - chr4.1:73160113-73160132 MS.gene059223:intron 30.0%
TTATGAATGATAGGTAAACG+GGG - chr4.1:73159801-73159820 MS.gene059223:intron 30.0%
TTCATGAAAACTGTTCTTGA+TGG - chr4.1:73161535-73161554 MS.gene059223:CDS 30.0%
! TAGGATGATTTATTCTAGAG+GGG + chr4.1:73160680-73160699 None:intergenic 30.0%
! TAGTTAAAGTGTTACCACAT+AGG + chr4.1:73160741-73160760 None:intergenic 30.0%
! TCTAGGATGATTTATTCTAG+AGG + chr4.1:73160682-73160701 None:intergenic 30.0%
! TGCACTTTGTGTATTTTGTT+TGG + chr4.1:73158921-73158940 None:intergenic 30.0%
! TTTGGATTGGAATCTACAAT+TGG - chr4.1:73160949-73160968 MS.gene059223:intron 30.0%
! TTTTACAAATGTAGCTTCGA+AGG - chr4.1:73161217-73161236 MS.gene059223:CDS 30.0%
!! ATCCATTTTTGCATGTTTCA+AGG + chr4.1:73158987-73159006 None:intergenic 30.0%
!! ATTTTGTTTGGCTAAGCTTT+TGG + chr4.1:73158909-73158928 None:intergenic 30.0%
!! GTATTGACTTTAGATTTGTG+TGG - chr4.1:73160152-73160171 MS.gene059223:intron 30.0%
!! GTTCTTGAATATTTTTGCCA+CGG + chr4.1:73161511-73161530 None:intergenic 30.0%
!! TTACTAGAAGTACTTACCAA+CGG + chr4.1:73159430-73159449 None:intergenic 30.0%
!!! TTTTTTTTCTTGGTCAAGAC+AGG + chr4.1:73159561-73159580 None:intergenic 30.0%
AAAGCAAAATTACCATCCCA+TGG + chr4.1:73161586-73161605 None:intergenic 35.0%
AAGATATGCAACCTTAACAC+CGG + chr4.1:73160112-73160131 None:intergenic 35.0%
AATTCATGGATAGGAAACAC+AGG - chr4.1:73161745-73161764 MS.gene059223:CDS 35.0%
ACTATATATGCGGTCCATTA+AGG + chr4.1:73160716-73160735 None:intergenic 35.0%
ATTTCATTGCCGGTAATTCA+TGG - chr4.1:73161731-73161750 MS.gene059223:CDS 35.0%
CAACAACCAAGTTACAAAGA+TGG - chr4.1:73159105-73159124 MS.gene059223:CDS 35.0%
CACAATATGAATCCCAAACA+TGG - chr4.1:73158941-73158960 MS.gene059223:CDS 35.0%
CACATGTATTGTCTTACGTT+TGG - chr4.1:73160567-73160586 MS.gene059223:intron 35.0%
CATCTTTGTAACTTGGTTGT+TGG + chr4.1:73159107-73159126 None:intergenic 35.0%
CGCATATATAGTTTCCTATG+TGG - chr4.1:73160724-73160743 MS.gene059223:intron 35.0%
GAAGAAAATACACATGCACT+TGG - chr4.1:73158814-73158833 MS.gene059223:CDS 35.0%
GAATATGCTAATACAGGTTC+AGG - chr4.1:73161625-73161644 MS.gene059223:CDS 35.0%
GAGTATTAAAAAACCTAGCG+TGG + chr4.1:73161072-73161091 None:intergenic 35.0%
GGAAATCCATCTTTGTAACT+TGG + chr4.1:73159114-73159133 None:intergenic 35.0%
GTTTCCTATCCATGAATTAC+CGG + chr4.1:73161743-73161762 None:intergenic 35.0%
TACATAGCTTCTCATTCTAG+AGG + chr4.1:73160070-73160089 None:intergenic 35.0%
TATGTGATATATGTGAAGGC+TGG - chr4.1:73159279-73159298 MS.gene059223:CDS 35.0%
TATTAAAGTGGGTCCTACAT+TGG + chr4.1:73160807-73160826 None:intergenic 35.0%
TTGTAACTTGGTTGTTGGTA+AGG + chr4.1:73159102-73159121 None:intergenic 35.0%
! ACAAAGATGGATTTCCAACA+TGG - chr4.1:73159118-73159137 MS.gene059223:CDS 35.0%
! ACAATTTTGCAAAACTACCG+CGG + chr4.1:73161332-73161351 None:intergenic 35.0%
! ACTTTTGCTACCAGTGATTA+TGG + chr4.1:73159373-73159392 None:intergenic 35.0%
! ATGGGATGGTAATTTTGCTT+TGG - chr4.1:73161585-73161604 MS.gene059223:CDS 35.0%
! CAAAGATGGATTTCCAACAT+GGG - chr4.1:73159119-73159138 MS.gene059223:CDS 35.0%
!!! TCCAGTGTTTTGATTTGGAT+CGG + chr4.1:73161413-73161432 None:intergenic 35.0%
!!! TGTTTTTGGGCTCAATTATG+TGG + chr4.1:73160431-73160450 None:intergenic 35.0%
!!! TTTTTTTTTGCAGCTGCTAC+TGG - chr4.1:73161097-73161116 MS.gene059223:intron 35.0%
AAGCTGTACTAAGCCATGTT+TGG + chr4.1:73158957-73158976 None:intergenic 40.0%
AATGTCATCGTTGCTAAGGA+TGG - chr4.1:73159195-73159214 MS.gene059223:CDS 40.0%
ACCGATCCAAATCAAAACAC+TGG - chr4.1:73161409-73161428 MS.gene059223:CDS 40.0%
ACTTCTTCAAACTTCTTCCG+CGG - chr4.1:73159161-73159180 MS.gene059223:CDS 40.0%
AGCTCTGTTAAATCGTACCT+TGG - chr4.1:73161481-73161500 MS.gene059223:CDS 40.0%
AGCTGTACTAAGCCATGTTT+GGG + chr4.1:73158956-73158975 None:intergenic 40.0%
AGGGTTTAAATCCGATTGAG+CGG + chr4.1:73161461-73161480 None:intergenic 40.0%
AGGTACGATTTAACAGAGCT+AGG + chr4.1:73161481-73161500 None:intergenic 40.0%
AGGTTCATCCACTTCAAACA+GGG - chr4.1:73161645-73161664 MS.gene059223:CDS 40.0%
ATGAAATTCCCAACGGTGAA+AGG + chr4.1:73161718-73161737 None:intergenic 40.0%
ATTGCCGGTAATTCATGGAT+AGG - chr4.1:73161736-73161755 MS.gene059223:CDS 40.0%
CACAATTCCACATCCAATGT+AGG - chr4.1:73160791-73160810 MS.gene059223:intron 40.0%
GCAAAGAATGTCATGTTGGT+TGG - chr4.1:73159330-73159349 MS.gene059223:CDS 40.0%
GGTACGATTTAACAGAGCTA+GGG + chr4.1:73161480-73161499 None:intergenic 40.0%
GTATTGTCTTACGTTTGGCT+AGG - chr4.1:73160572-73160591 MS.gene059223:intron 40.0%
TAACACCTTGTCACTCAACA+AGG - chr4.1:73159074-73159093 MS.gene059223:CDS 40.0%
TCAAACAGGGTTACATGGAA+AGG - chr4.1:73161658-73161677 MS.gene059223:CDS 40.0%
TGAAGAAGTTTCCTATCACC+AGG + chr4.1:73159150-73159169 None:intergenic 40.0%
TGTATAACAACGGTCCTTCT+CGG - chr4.1:73160086-73160105 MS.gene059223:intron 40.0%
! AATGTCATGTTGGTTGGAGA+TGG - chr4.1:73159336-73159355 MS.gene059223:CDS 40.0%
! ACACGTCATGCATTTTGGAT+TGG - chr4.1:73160936-73160955 MS.gene059223:intron 40.0%
! AGACATAGTTTGTGACACCA+AGG + chr4.1:73159017-73159036 None:intergenic 40.0%
! AGTACACACGTCATGCATTT+TGG - chr4.1:73160931-73160950 MS.gene059223:intron 40.0%
! ATCACTGGTAGCAAAAGTGT+TGG - chr4.1:73159375-73159394 MS.gene059223:CDS 40.0%
! ATGTTGGTTGGAGATGGTAT+TGG - chr4.1:73159342-73159361 MS.gene059223:CDS 40.0%
! GGCACAGTTGATTTCATCTT+TGG - chr4.1:73161301-73161320 MS.gene059223:CDS 40.0%
! GTAACTGTGATGGTTTTTGC+AGG + chr4.1:73161376-73161395 None:intergenic 40.0%
! GTGAAGCACTAGTAAGAACA+TGG + chr4.1:73161687-73161706 None:intergenic 40.0%
! TATTCTAGAGGGGAAAGATG+TGG + chr4.1:73160670-73160689 None:intergenic 40.0%
! TTTCCAACATGGGTTAAACC+TGG - chr4.1:73159129-73159148 MS.gene059223:CDS 40.0%
!! GTTTTATTAACCCTGCTGGT+TGG - chr4.1:73161557-73161576 MS.gene059223:CDS 40.0%
!!! GATGGTTTTATTAACCCTGC+TGG - chr4.1:73161553-73161572 MS.gene059223:CDS 40.0%
AAATACCGATAGATCGGAGC+CGG + chr4.1:73161200-73161219 None:intergenic 45.0%
AAGCTTCACCTTTCACCGTT+GGG - chr4.1:73161707-73161726 MS.gene059223:CDS 45.0%
ACATACCTTCCACTACCACT+TGG + chr4.1:73159264-73159283 None:intergenic 45.0%
ACCGGCAATGAAATTCCCAA+CGG + chr4.1:73161725-73161744 None:intergenic 45.0%
ACCGTTGGGAATTTCATTGC+CGG - chr4.1:73161721-73161740 MS.gene059223:CDS 45.0%
ACTTACCAACGGTTGCTGAA+CGG + chr4.1:73159419-73159438 None:intergenic 45.0%
AGGAACCTTGTTGAGTGACA+AGG + chr4.1:73159082-73159101 None:intergenic 45.0%
ATCGTTGCTAAGGATGGTTC+GGG - chr4.1:73159201-73159220 MS.gene059223:CDS 45.0%
CAAGCTGTTGCATTTCGTTC+CGG - chr4.1:73161178-73161197 MS.gene059223:CDS 45.0%
CAGGTTCATCCACTTCAAAC+AGG - chr4.1:73161644-73161663 MS.gene059223:CDS 45.0%
CATCGTTGCTAAGGATGGTT+CGG - chr4.1:73159200-73159219 MS.gene059223:CDS 45.0%
CCACTTCAAACAGGGTTACA+TGG - chr4.1:73161653-73161672 MS.gene059223:CDS 45.0%
CCATGTAACCCTGTTTGAAG+TGG + chr4.1:73161656-73161675 None:intergenic 45.0%
CCCACAAGAAAAAGCTGCTT+GGG - chr4.1:73158852-73158871 MS.gene059223:CDS 45.0%
GGCTAATGTCATCGTTGCTA+AGG - chr4.1:73159191-73159210 MS.gene059223:CDS 45.0%
TCACCAGGTTTAACCCATGT+TGG + chr4.1:73159135-73159154 None:intergenic 45.0%
TCTTACGTTTGGCTAGGACA+AGG - chr4.1:73160578-73160597 MS.gene059223:intron 45.0%
! ACTGTGATGGTTTTTGCAGG+CGG + chr4.1:73161373-73161392 None:intergenic 45.0%
! ATTTTTGCCACGGTCTACCA+AGG + chr4.1:73161501-73161520 None:intergenic 45.0%
! CATGGGTTAAACCTGGTGAT+AGG - chr4.1:73159136-73159155 MS.gene059223:CDS 45.0%
!! ACTGGTAGCAAAAGTGTTGG+AGG - chr4.1:73159378-73159397 MS.gene059223:CDS 45.0%
!! CAGCTTTTTCTTGTGGGCTA+CGG + chr4.1:73158849-73158868 None:intergenic 45.0%
!! CCCAAGCAGCTTTTTCTTGT+GGG + chr4.1:73158855-73158874 None:intergenic 45.0%
!! TTCTAGGGTTTCCGCTCAAT+CGG - chr4.1:73161447-73161466 MS.gene059223:CDS 45.0%
!! TTTCATCTTTGGTAACGCCG+CGG - chr4.1:73161312-73161331 MS.gene059223:CDS 45.0%
AATCGTACCTTGGTAGACCG+TGG - chr4.1:73161491-73161510 MS.gene059223:CDS 50.0%
AATTGCTTGTGCTCCACGCT+AGG - chr4.1:73161056-73161075 MS.gene059223:intron 50.0%
ACTTTCCGTTCAGCAACCGT+TGG - chr4.1:73159411-73159430 MS.gene059223:CDS 50.0%
AGTGGGTCCTACATTGGATG+TGG + chr4.1:73160801-73160820 None:intergenic 50.0%
CAAGCTTCACCTTTCACCGT+TGG - chr4.1:73161706-73161725 MS.gene059223:CDS 50.0%
CGGAACGAAATGCAACAGCT+TGG + chr4.1:73161180-73161199 None:intergenic 50.0%
GCCCACAAGAAAAAGCTGCT+TGG - chr4.1:73158851-73158870 MS.gene059223:CDS 50.0%
GGTTGCTGAACGGAAAGTAG+TGG + chr4.1:73159409-73159428 None:intergenic 50.0%
TTTGCAGCTGCTACTGGTGA+TGG - chr4.1:73161103-73161122 MS.gene059223:intron 50.0%
! CTGTGATGGTTTTTGCAGGC+GGG + chr4.1:73161372-73161391 None:intergenic 50.0%
!! GCCCAAGCAGCTTTTTCTTG+TGG + chr4.1:73158856-73158875 None:intergenic 50.0%
!! GGTAGCAAAAGTGTTGGAGG+TGG - chr4.1:73159381-73159400 MS.gene059223:CDS 50.0%
AACCTTAACACCGGCCGAGA+AGG + chr4.1:73160103-73160122 None:intergenic 55.0%
AACTTCTTCCGCGGCTTCGA+AGG - chr4.1:73159170-73159189 MS.gene059223:CDS 55.0%
ACCATCACAGTTACCGCGCA+AGG - chr4.1:73161382-73161401 MS.gene059223:CDS 55.0%
CCCATGGTAACCAACCAGCA+GGG + chr4.1:73161570-73161589 None:intergenic 55.0%
GATGCTGCACCAAGTGGTAG+TGG - chr4.1:73159252-73159271 MS.gene059223:CDS 55.0%
TAACAACGGTCCTTCTCGGC+CGG - chr4.1:73160090-73160109 MS.gene059223:intron 55.0%
TCCCATGGTAACCAACCAGC+AGG + chr4.1:73161571-73161590 None:intergenic 55.0%
TCCTTGCGCGGTAACTGTGA+TGG + chr4.1:73161386-73161405 None:intergenic 55.0%
TCGTTCCGGCTCCGATCTAT+CGG - chr4.1:73161192-73161211 MS.gene059223:CDS 55.0%
! ACCCTGCTGGTTGGTTACCA+TGG - chr4.1:73161566-73161585 MS.gene059223:CDS 55.0%
! CCCTGCTGGTTGGTTACCAT+GGG - chr4.1:73161567-73161586 MS.gene059223:CDS 55.0%
! CTTGTGGGCTACGGCACTTA+GGG + chr4.1:73158840-73158859 None:intergenic 55.0%
! GCTGGTTGGTTACCATGGGA+TGG - chr4.1:73161571-73161590 MS.gene059223:CDS 55.0%
! TCTTGTGGGCTACGGCACTT+AGG + chr4.1:73158841-73158860 None:intergenic 55.0%
! TGGATCGGTTCTTCCTTGCG+CGG + chr4.1:73161398-73161417 None:intergenic 55.0%
! TGGTTCGGGCAAGTACACGA+CGG - chr4.1:73159215-73159234 MS.gene059223:CDS 55.0%
!! CTGCACCAAGTGGTAGTGGA+AGG - chr4.1:73159256-73159275 MS.gene059223:CDS 55.0%
!! GACATTAGCCTTCGAAGCCG+CGG + chr4.1:73159181-73159200 None:intergenic 55.0%
GGGCAAGTACACGACGGTGA+AGG - chr4.1:73159221-73159240 MS.gene059223:CDS 60.0%
! ACAGGCGTGCCATTCACCTC+TGG - chr4.1:73161763-73161782 MS.gene059223:CDS 60.0%
! GTCCTTCTCGGCCGGTGTTA+AGG - chr4.1:73160098-73160117 MS.gene059223:intron 60.0%
!! ACTTGGTGCAGCATCCGTCG+CGG + chr4.1:73159247-73159266 None:intergenic 60.0%
GCGACGGATGCTGCACCAAG+TGG - chr4.1:73159246-73159265 MS.gene059223:CDS 65.0%
CACGACGGTGAAGGCCGCGA+CGG - chr4.1:73159230-73159249 MS.gene059223:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 73158793 73161792 73158793 ID=MS.gene059223
chr4.1 mRNA 73158793 73161792 73158793 ID=MS.gene059223.t1;Parent=MS.gene059223
chr4.1 exon 73161153 73161792 73161153 ID=MS.gene059223.t1.exon1;Parent=MS.gene059223.t1
chr4.1 CDS 73161153 73161792 73161153 ID=cds.MS.gene059223.t1;Parent=MS.gene059223.t1
chr4.1 exon 73158793 73159475 73158793 ID=MS.gene059223.t1.exon2;Parent=MS.gene059223.t1
chr4.1 CDS 73158793 73159475 73158793 ID=cds.MS.gene059223.t1;Parent=MS.gene059223.t1
Gene Sequence

>MS.gene059223

ATGGAGAGAGCAAAAAAAGGTGAAGAAAATACACATGCACTTGGCCCTAAGTGCCGTAGCCCACAAGAAAAAGCTGCTTGGGCAGATTGTCTTGAACTCTATGATTTCACAGTCCAAAAGCTTAGCCAAACAAAATACACAAAGTGCACACAATATGAATCCCAAACATGGCTTAGTACAGCTTTAACAAACCTTGAAACATGCAAAAATGGATTTTATGACCTTGGTGTCACAAACTATGTCTTACCTTTGTTGTCTAATAATGTAACAAAGTTGTTAAGTAACACCTTGTCACTCAACAAGGTTCCTTACCAACAACCAAGTTACAAAGATGGATTTCCAACATGGGTTAAACCTGGTGATAGGAAACTTCTTCAAACTTCTTCCGCGGCTTCGAAGGCTAATGTCATCGTTGCTAAGGATGGTTCGGGCAAGTACACGACGGTGAAGGCCGCGACGGATGCTGCACCAAGTGGTAGTGGAAGGTATGTGATATATGTGAAGGCTGGTGTGTATAATGAACAAGTTGAGATTAAAGCAAAGAATGTCATGTTGGTTGGAGATGGTATTGGTAAAACCATAATCACTGGTAGCAAAAGTGTTGGAGGTGGCACCACTACTTTCCGTTCAGCAACCGTTGGTAAGTACTTCTAGTAACAATTTATTTTACCGTACAGCTTTTTTTATCCCTTAAAGTTTATCCCTTAAAGAAAAGTTCGCAAATAAACTATCATTATGAATTATTACCTTATTAAAAAGTTCTTACCTGTCTTGACCAAGAAAAAAAAAGTTCATTCATTTTATCAACCAATAACTAAATCATAAACTAGTCACTTTCCTTTATTGAAAAATCTTATGCAAATTTCTTGCTTAGAAAGTTAACTAGTCGGAATAATTCAAAGCTATAAAAAGAATACATATGCTTTTTTCTACTCATGAATAAATATGCGATATGTTTCAACCATTAATTTAAATATTTATTTATTTATTTATATACATGAAAATTACTTATGAATGATAGGTAAACGGGGTATACTTATTTTATTTCCATCTAGGGTTAAATTAATTTTTAATATTTACAAAAAAAAAGTGTTGGTGATTATCTGATCTAACCTTTAAGTTATTTGTTATATTTATACTATTATAATTTTATTATAATTTCATAATCAATAAAAATGAATATACATACTTGTTACTATTATAATCTACATATCTTTATTTTCGTTTTATGAAAAATAAATAAATAATTATATCAGTAGGGGTATAGAAAATAACCTCTAGAATGAGAAGCTATGTATAACAACGGTCCTTCTCGGCCGGTGTTAAGGTTGCATATCTTATGGAACTTGAATAATATTCGTATTGACTTTAGATTTGTGTGGTATATGGCAAATTATCAATTACTCACAGACAAATGAGTCCTTGAGTAAGAAAGTAGATAATAGACCAAAGGATATAAATAATTATTCAAAATGATACATTATGCCATTGTGATTACTTTAAAATCTCTTTACGGTCCTTCTATGATATATTATCTTAATCCTAATTATATAAAAGCAAGCAGCAAAGTTGAATTATGTCCCTTAATTTAATGATTAAGAAATTTATTAGACCACAATAATTGATTTAATTGAACCACATAATTGAGCCCAAAAACATAATGAATTGAATATCGTGGATTGAAATTTACAATCCAATAAAGTTTTAGACTATGATTTGAATCATTTACATGGATGATTGAATTATTATTATGTAGCTTTCAAAAATGAAGGAGCACATGTATTGTCTTACGTTTGGCTAGGACAAGGATCAAAATAAGATTTTTAGTAGTCAAATCTTTAGAGGAAGATGTGCCGACTATAACATATAGAAAGCCACATCTTTCCCCTCTAGAATAAATCATCCTAGATTAATATTTTTCCTTAATGGACCGCATATATAGTTTCCTATGTGGTAACACTTTAACTAATTTCTTAATTGGTAGCTCAAACTTGTTTTCACAATTCCACATCCAATGTAGGACCCACTTTAATATAGTCTTATTCAATTGAAGATCCTTTAATTAAAAGAAGAATGTGGGGCTTTAGAAGCATGTATACCATAAGTTAATAATCAGTTGAACTATATAAATTAATCATAGTACACACGTCATGCATTTTGGATTGGAATCTACAATTGGTTAGAATGTCACTTTGAGATTTGAAAAATGTACACATAAACTAATAGTCAATGCAACTGTTTTTTATTACTTATTTTTCATTTCAATTGCTTGTGCTCCACGCTAGGTTTTTTAATACTCTTTTTTTTTTTTTTGCAGCTGCTACTGGTGATGGATTTATTGCTCAAGACATCACATTTAGAAATACAGCTGGAGCTGCAAATCACCAAGCTGTTGCATTTCGTTCCGGCTCCGATCTATCGGTATTTTACAAATGTAGCTTCGAAGGTTATCAAGACACACTTTATGTTCACTCAGAGAGACAATTTTACAGAGAATGTAACATCTATGGCACAGTTGATTTCATCTTTGGTAACGCCGCGGTAGTTTTGCAAAATTGTAACATTTTTGCAAGAAACCCGCCTGCAAAAACCATCACAGTTACCGCGCAAGGAAGAACCGATCCAAATCAAAACACTGGAATTATAATTCATAATTCTAGGGTTTCCGCTCAATCGGATTTAAACCCTAGCTCTGTTAAATCGTACCTTGGTAGACCGTGGCAAAAATATTCAAGAACAGTTTTCATGAAAACTGTTCTTGATGGTTTTATTAACCCTGCTGGTTGGTTACCATGGGATGGTAATTTTGCTTTGGATACTTTATATTATGCTGAATATGCTAATACAGGTTCAGGTTCATCCACTTCAAACAGGGTTACATGGAAAGGTTACCATGTTCTTACTAGTGCTTCACAAGCTTCACCTTTCACCGTTGGGAATTTCATTGCCGGTAATTCATGGATAGGAAACACAGGCGTGCCATTCACCTCTGGACTTTAA

Protein sequence

>MS.gene059223.t1

MERAKKGEENTHALGPKCRSPQEKAAWADCLELYDFTVQKLSQTKYTKCTQYESQTWLSTALTNLETCKNGFYDLGVTNYVLPLLSNNVTKLLSNTLSLNKVPYQQPSYKDGFPTWVKPGDRKLLQTSSAASKANVIVAKDGSGKYTTVKAATDAAPSGSGRYVIYVKAGVYNEQVEIKAKNVMLVGDGIGKTIITGSKSVGGGTTTFRSATVAATGDGFIAQDITFRNTAGAANHQAVAFRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECNIYGTVDFIFGNAAVVLQNCNIFARNPPAKTITVTAQGRTDPNQNTGIIIHNSRVSAQSDLNPSSVKSYLGRPWQKYSRTVFMKTVLDGFINPAGWLPWDGNFALDTLYYAEYANTGSGSSTSNRVTWKGYHVLTSASQASPFTVGNFIAGNSWIGNTGVPFTSGL