Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21587.t1 | XP_003591647.1 | 89.4 | 180 | 13 | 2 | 1 | 175 | 1 | 179 | 3.90E-81 | 310.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21587.t1 | O82081 | 43.6 | 117 | 65 | 1 | 2 | 117 | 5 | 121 | 3.9e-21 | 102.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21587.t1 | G7I2Z3 | 89.4 | 180 | 13 | 2 | 1 | 175 | 1 | 179 | 2.8e-81 | 310.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053958 | MS.gene21587 | 0.832549 | 8.87E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21587 | MS.gene36349 | PPI |
| MS.gene21587 | MS.gene85147 | PPI |
| MS.gene21587 | MS.gene76531 | PPI |
| MS.gene069866 | MS.gene21587 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21587.t1 | MTR_1g090190 | 89.444 | 180 | 13 | 2 | 1 | 175 | 1 | 179 | 2.83e-107 | 304 |
| MS.gene21587.t1 | MTR_2g088990 | 38.519 | 135 | 75 | 4 | 3 | 136 | 9 | 136 | 3.73e-28 | 105 |
| MS.gene21587.t1 | MTR_3g099580 | 42.609 | 115 | 65 | 1 | 4 | 118 | 8 | 121 | 5.54e-28 | 103 |
| MS.gene21587.t1 | MTR_8g007035 | 40.517 | 116 | 61 | 2 | 4 | 117 | 11 | 120 | 4.08e-27 | 101 |
| MS.gene21587.t1 | MTR_3g099980 | 40.171 | 117 | 65 | 3 | 5 | 119 | 11 | 124 | 5.00e-26 | 99.4 |
| MS.gene21587.t1 | MTR_3g099680 | 40.171 | 117 | 65 | 3 | 5 | 119 | 11 | 124 | 7.51e-26 | 99.0 |
| MS.gene21587.t1 | MTR_8g007020 | 31.461 | 178 | 102 | 4 | 4 | 167 | 11 | 182 | 1.66e-25 | 97.1 |
| MS.gene21587.t1 | MTR_3g099570 | 34.752 | 141 | 83 | 2 | 5 | 145 | 11 | 142 | 2.29e-25 | 96.7 |
| MS.gene21587.t1 | MTR_6g080660 | 36.441 | 118 | 71 | 1 | 1 | 118 | 10 | 123 | 2.45e-24 | 94.7 |
| MS.gene21587.t1 | MTR_5g006040 | 31.056 | 161 | 103 | 3 | 1 | 153 | 4 | 164 | 1.15e-23 | 92.0 |
| MS.gene21587.t1 | MTR_3g099540 | 35.938 | 128 | 79 | 1 | 1 | 128 | 8 | 132 | 5.12e-22 | 86.7 |
| MS.gene21587.t1 | MTR_4g114870 | 42.574 | 101 | 53 | 2 | 22 | 117 | 190 | 290 | 7.47e-22 | 90.9 |
| MS.gene21587.t1 | MTR_4g114870 | 33.824 | 136 | 83 | 3 | 4 | 134 | 10 | 143 | 2.29e-16 | 75.9 |
| MS.gene21587.t1 | MTR_1g104800 | 34.167 | 120 | 75 | 3 | 1 | 117 | 4 | 122 | 5.66e-21 | 85.1 |
| MS.gene21587.t1 | MTR_6g013200 | 33.129 | 163 | 91 | 5 | 4 | 157 | 16 | 169 | 8.61e-21 | 84.3 |
| MS.gene21587.t1 | MTR_6g013420 | 38.235 | 136 | 78 | 4 | 4 | 136 | 19 | 151 | 9.07e-21 | 84.7 |
| MS.gene21587.t1 | MTR_6g023760 | 39.394 | 99 | 59 | 1 | 20 | 117 | 23 | 121 | 6.28e-20 | 82.4 |
| MS.gene21587.t1 | MTR_1g112700 | 34.058 | 138 | 79 | 4 | 4 | 130 | 14 | 150 | 2.33e-18 | 78.2 |
| MS.gene21587.t1 | MTR_2g025580 | 29.577 | 142 | 97 | 3 | 4 | 143 | 8 | 148 | 3.87e-18 | 77.4 |
| MS.gene21587.t1 | MTR_8g099220 | 35.938 | 128 | 69 | 4 | 2 | 118 | 3 | 128 | 4.82e-17 | 73.6 |
| MS.gene21587.t1 | MTR_8g463180 | 36.364 | 121 | 73 | 3 | 1 | 117 | 1 | 121 | 5.51e-17 | 77.0 |
| MS.gene21587.t1 | MTR_8g086360 | 33.813 | 139 | 84 | 4 | 4 | 135 | 6 | 143 | 7.18e-17 | 74.7 |
| MS.gene21587.t1 | MTR_0334s0010 | 34.127 | 126 | 75 | 2 | 1 | 118 | 1 | 126 | 1.18e-16 | 74.3 |
| MS.gene21587.t1 | MTR_6g022170 | 38.462 | 104 | 58 | 2 | 19 | 117 | 30 | 132 | 1.61e-16 | 73.2 |
| MS.gene21587.t1 | MTR_8g089110 | 36.842 | 114 | 68 | 3 | 4 | 116 | 9 | 119 | 4.76e-16 | 70.9 |
| MS.gene21587.t1 | MTR_1g014120 | 32.867 | 143 | 83 | 5 | 4 | 135 | 9 | 149 | 1.08e-15 | 71.2 |
| MS.gene21587.t1 | MTR_1g090420 | 30.263 | 152 | 96 | 4 | 5 | 152 | 10 | 155 | 4.14e-15 | 70.5 |
| MS.gene21587.t1 | MTR_4g130780 | 31.061 | 132 | 83 | 4 | 5 | 128 | 9 | 140 | 8.87e-15 | 68.9 |
| MS.gene21587.t1 | MTR_8g094990 | 32.593 | 135 | 82 | 4 | 4 | 130 | 7 | 140 | 1.39e-14 | 70.1 |
| MS.gene21587.t1 | MTR_4g130800 | 34.454 | 119 | 70 | 4 | 5 | 115 | 9 | 127 | 1.73e-14 | 69.7 |
| MS.gene21587.t1 | MTR_2g090575 | 33.577 | 137 | 80 | 4 | 4 | 130 | 7 | 142 | 1.84e-14 | 70.1 |
| MS.gene21587.t1 | MTR_6g083240 | 30.818 | 159 | 96 | 6 | 20 | 170 | 24 | 176 | 3.09e-14 | 67.4 |
| MS.gene21587.t1 | MTR_7g086100 | 29.268 | 123 | 84 | 2 | 2 | 121 | 5 | 127 | 5.49e-14 | 67.8 |
| MS.gene21587.t1 | MTR_3g089035 | 35.294 | 102 | 62 | 3 | 17 | 117 | 27 | 125 | 1.07e-13 | 64.7 |
| MS.gene21587.t1 | MTR_7g086090 | 29.310 | 116 | 81 | 1 | 4 | 118 | 7 | 122 | 1.78e-13 | 66.6 |
| MS.gene21587.t1 | MTR_4g124280 | 32.800 | 125 | 70 | 3 | 20 | 130 | 22 | 146 | 1.98e-13 | 66.2 |
| MS.gene21587.t1 | MTR_2g101300 | 29.787 | 141 | 89 | 4 | 9 | 142 | 11 | 148 | 2.41e-13 | 65.1 |
| MS.gene21587.t1 | MTR_1g077790 | 36.190 | 105 | 61 | 3 | 23 | 121 | 29 | 133 | 3.66e-13 | 64.7 |
| MS.gene21587.t1 | MTR_4g081100 | 32.710 | 107 | 67 | 2 | 19 | 120 | 28 | 134 | 4.13e-13 | 65.1 |
| MS.gene21587.t1 | MTR_7g086160 | 31.405 | 121 | 80 | 3 | 4 | 121 | 7 | 127 | 4.46e-13 | 63.9 |
| MS.gene21587.t1 | MTR_2g079030 | 33.333 | 132 | 83 | 4 | 2 | 130 | 5 | 134 | 4.94e-13 | 66.6 |
| MS.gene21587.t1 | MTR_1g105130 | 28.926 | 121 | 84 | 2 | 3 | 121 | 5 | 125 | 5.10e-13 | 63.5 |
| MS.gene21587.t1 | MTR_1g105120 | 28.926 | 121 | 84 | 2 | 3 | 121 | 5 | 125 | 5.10e-13 | 63.5 |
| MS.gene21587.t1 | MTR_2g043730 | 36.207 | 116 | 68 | 4 | 4 | 116 | 11 | 123 | 7.42e-13 | 62.4 |
| MS.gene21587.t1 | MTR_3g105930 | 33.628 | 113 | 67 | 3 | 26 | 130 | 31 | 143 | 8.79e-13 | 63.5 |
| MS.gene21587.t1 | MTR_4g077787 | 33.333 | 123 | 74 | 3 | 4 | 119 | 12 | 133 | 9.78e-13 | 63.5 |
| MS.gene21587.t1 | MTR_4g130800 | 36.364 | 99 | 57 | 3 | 23 | 115 | 28 | 126 | 1.26e-12 | 64.3 |
| MS.gene21587.t1 | MTR_4g078410 | 30.822 | 146 | 96 | 3 | 4 | 146 | 6 | 149 | 1.40e-12 | 63.2 |
| MS.gene21587.t1 | MTR_4g111640 | 24.859 | 177 | 117 | 4 | 4 | 173 | 12 | 179 | 1.47e-12 | 63.2 |
| MS.gene21587.t1 | MTR_2g083250 | 34.259 | 108 | 64 | 3 | 20 | 120 | 23 | 130 | 3.32e-12 | 63.2 |
| MS.gene21587.t1 | MTR_6g013170 | 30.986 | 142 | 89 | 5 | 4 | 137 | 7 | 147 | 6.60e-12 | 61.2 |
| MS.gene21587.t1 | MTR_7g086280 | 28.448 | 116 | 82 | 1 | 4 | 118 | 7 | 122 | 9.06e-12 | 60.8 |
| MS.gene21587.t1 | MTR_7g086140 | 30.000 | 120 | 82 | 2 | 4 | 121 | 7 | 126 | 1.16e-11 | 60.1 |
| MS.gene21587.t1 | MTR_7g086190 | 30.000 | 120 | 82 | 2 | 4 | 121 | 7 | 126 | 1.16e-11 | 60.1 |
| MS.gene21587.t1 | MTR_5g088000 | 27.737 | 137 | 92 | 4 | 4 | 137 | 2 | 134 | 2.48e-11 | 58.9 |
| MS.gene21587.t1 | MTR_3g089005 | 30.508 | 118 | 77 | 4 | 1 | 116 | 10 | 124 | 2.75e-11 | 58.5 |
| MS.gene21587.t1 | MTR_8g095013 | 31.356 | 118 | 76 | 3 | 4 | 117 | 7 | 123 | 3.92e-11 | 60.5 |
| MS.gene21587.t1 | MTR_8g088830 | 36.364 | 99 | 58 | 4 | 20 | 116 | 25 | 120 | 4.36e-11 | 57.8 |
| MS.gene21587.t1 | MTR_7g086230 | 26.724 | 116 | 84 | 1 | 4 | 118 | 7 | 122 | 7.33e-11 | 58.2 |
| MS.gene21587.t1 | MTR_4g007250 | 30.693 | 101 | 68 | 2 | 19 | 118 | 25 | 124 | 7.66e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21587.t1 | AT5G07475 | 49.686 | 159 | 76 | 3 | 1 | 158 | 7 | 162 | 1.26e-48 | 156 |
| MS.gene21587.t1 | AT2G32300 | 43.590 | 117 | 65 | 1 | 2 | 117 | 5 | 121 | 1.60e-30 | 112 |
| MS.gene21587.t1 | AT2G32300 | 43.590 | 117 | 65 | 1 | 2 | 117 | 35 | 151 | 5.12e-30 | 111 |
| MS.gene21587.t1 | AT2G31050 | 39.683 | 126 | 72 | 3 | 7 | 130 | 13 | 136 | 6.34e-24 | 93.2 |
| MS.gene21587.t1 | AT5G26330 | 39.604 | 101 | 58 | 2 | 20 | 117 | 21 | 121 | 3.10e-21 | 85.9 |
| MS.gene21587.t1 | AT2G25060 | 39.073 | 151 | 70 | 5 | 4 | 136 | 16 | 162 | 3.36e-21 | 85.9 |
| MS.gene21587.t1 | AT3G60270 | 38.776 | 98 | 60 | 0 | 20 | 117 | 23 | 120 | 3.96e-21 | 85.9 |
| MS.gene21587.t1 | AT3G27200 | 35.833 | 120 | 73 | 3 | 1 | 117 | 3 | 121 | 4.57e-21 | 85.1 |
| MS.gene21587.t1 | AT2G26720 | 36.207 | 116 | 69 | 3 | 4 | 117 | 13 | 125 | 9.49e-21 | 85.1 |
| MS.gene21587.t1 | AT5G25090 | 38.596 | 114 | 65 | 2 | 9 | 117 | 13 | 126 | 3.21e-20 | 83.6 |
| MS.gene21587.t1 | AT4G31840 | 34.752 | 141 | 82 | 5 | 5 | 135 | 6 | 146 | 9.76e-18 | 76.6 |
| MS.gene21587.t1 | AT3G60280 | 37.755 | 98 | 61 | 0 | 20 | 117 | 21 | 118 | 1.02e-17 | 77.8 |
| MS.gene21587.t1 | AT1G72230 | 30.894 | 123 | 83 | 1 | 31 | 151 | 31 | 153 | 1.80e-17 | 76.3 |
| MS.gene21587.t1 | AT3G20570 | 40.000 | 105 | 59 | 2 | 20 | 120 | 27 | 131 | 2.24e-17 | 76.3 |
| MS.gene21587.t1 | AT3G17675 | 30.769 | 117 | 78 | 2 | 4 | 117 | 11 | 127 | 8.54e-17 | 72.8 |
| MS.gene21587.t1 | AT5G53870 | 33.333 | 120 | 69 | 3 | 5 | 113 | 4 | 123 | 2.07e-16 | 75.9 |
| MS.gene21587.t1 | AT5G53870 | 33.333 | 120 | 69 | 3 | 5 | 113 | 4 | 123 | 2.24e-16 | 75.9 |
| MS.gene21587.t1 | AT2G44790 | 38.000 | 100 | 56 | 2 | 20 | 117 | 29 | 124 | 1.43e-15 | 71.6 |
| MS.gene21587.t1 | AT4G28365 | 29.221 | 154 | 100 | 3 | 5 | 149 | 11 | 164 | 1.57e-15 | 71.2 |
| MS.gene21587.t1 | AT2G23990 | 36.029 | 136 | 74 | 5 | 9 | 131 | 13 | 148 | 2.43e-15 | 70.9 |
| MS.gene21587.t1 | AT1G45063 | 33.333 | 126 | 76 | 4 | 1 | 120 | 6 | 129 | 4.10e-15 | 71.2 |
| MS.gene21587.t1 | AT1G45063 | 33.333 | 120 | 72 | 5 | 16 | 130 | 142 | 258 | 1.59e-11 | 61.6 |
| MS.gene21587.t1 | AT1G45063 | 33.333 | 126 | 76 | 4 | 1 | 120 | 6 | 129 | 5.88e-15 | 71.6 |
| MS.gene21587.t1 | AT1G45063 | 33.333 | 120 | 72 | 5 | 16 | 130 | 142 | 258 | 2.06e-11 | 61.6 |
| MS.gene21587.t1 | AT1G79800 | 34.454 | 119 | 66 | 4 | 23 | 130 | 34 | 151 | 6.96e-15 | 69.3 |
| MS.gene21587.t1 | AT4G27520 | 35.897 | 117 | 68 | 3 | 4 | 117 | 16 | 128 | 2.18e-14 | 70.1 |
| MS.gene21587.t1 | AT4G12880 | 32.479 | 117 | 75 | 3 | 5 | 118 | 11 | 126 | 3.28e-14 | 66.6 |
| MS.gene21587.t1 | AT1G64640 | 36.364 | 121 | 70 | 3 | 19 | 132 | 29 | 149 | 3.36e-14 | 67.8 |
| MS.gene21587.t1 | AT3G53330 | 32.787 | 122 | 77 | 4 | 23 | 139 | 188 | 309 | 1.54e-13 | 67.4 |
| MS.gene21587.t1 | AT3G18590 | 30.894 | 123 | 77 | 3 | 2 | 117 | 5 | 126 | 2.42e-13 | 65.5 |
| MS.gene21587.t1 | AT4G30590 | 34.188 | 117 | 70 | 4 | 4 | 113 | 8 | 124 | 6.09e-13 | 64.3 |
| MS.gene21587.t1 | AT1G22480 | 32.231 | 121 | 76 | 2 | 1 | 120 | 1 | 116 | 8.13e-13 | 63.5 |
| MS.gene21587.t1 | AT5G57920 | 34.783 | 92 | 53 | 2 | 37 | 127 | 42 | 127 | 1.63e-12 | 62.8 |
| MS.gene21587.t1 | AT4G32490 | 33.058 | 121 | 76 | 3 | 4 | 121 | 14 | 132 | 1.78e-12 | 63.5 |
| MS.gene21587.t1 | AT5G57920 | 34.783 | 92 | 53 | 2 | 37 | 127 | 41 | 126 | 3.21e-12 | 62.0 |
| MS.gene21587.t1 | AT5G57920 | 32.710 | 107 | 61 | 3 | 26 | 127 | 59 | 159 | 3.43e-12 | 62.8 |
| MS.gene21587.t1 | AT3G01070 | 38.938 | 113 | 66 | 2 | 9 | 118 | 13 | 125 | 5.00e-12 | 61.2 |
Find 27 sgRNAs with CRISPR-Local
Find 47 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGCGCTCTTCTTTGTTGA+TGG | 0.292064 | 1.3:+63076334 | None:intergenic |
| TCTGATCCAGCTACTGCTTT+TGG | 0.293698 | 1.3:+63076370 | None:intergenic |
| TATAGTTTATATTGCTGTTA+TGG | 0.320304 | 1.3:-63076281 | MS.gene21587:CDS |
| ACAAAAGTGTTGGCAAATTA+CGG | 0.407043 | 1.3:-63076532 | MS.gene21587:CDS |
| GTGTTGGCAAATTACGGAAA+TGG | 0.435345 | 1.3:-63076526 | MS.gene21587:CDS |
| CATTGACAAGAGCCGGAGAC+AGG | 0.497365 | 1.3:-63076489 | MS.gene21587:CDS |
| CTGTCTCCGGCTCTTGTCAA+TGG | 0.513474 | 1.3:+63076490 | None:intergenic |
| CTAGCACCAAAAGCAGTAGC+TGG | 0.518482 | 1.3:-63076376 | MS.gene21587:CDS |
| CTGTTGGAGATAGCTCTGGC+TGG | 0.524284 | 1.3:-63077038 | MS.gene21587:CDS |
| TACACTGTTGGAGATAGCTC+TGG | 0.540204 | 1.3:-63077042 | MS.gene21587:CDS |
| AACAAACTGTATTGCCTTGG+TGG | 0.541279 | 1.3:-63076451 | MS.gene21587:CDS |
| ACATACAAAATACCTGTCTC+CGG | 0.555623 | 1.3:+63076477 | None:intergenic |
| ACGGTGCCATTGACAAGAGC+CGG | 0.574751 | 1.3:-63076496 | MS.gene21587:CDS |
| ATGCAACACAACAAAAGTGT+TGG | 0.577530 | 1.3:-63076542 | MS.gene21587:CDS |
| TCAGCAACTACCTACACTGT+TGG | 0.586019 | 1.3:-63077054 | MS.gene21587:CDS |
| TGTTGGAGATAGCTCTGGCT+GGG | 0.608785 | 1.3:-63077037 | MS.gene21587:CDS |
| CAGTAGCTGGATCAGATCAA+AGG | 0.609991 | 1.3:-63076363 | MS.gene21587:CDS |
| AGAGCTATCTCCAACAGTGT+AGG | 0.611707 | 1.3:+63077044 | None:intergenic |
| CATGTTCATGTAGAAGATGA+CGG | 0.616290 | 1.3:-63076418 | MS.gene21587:CDS |
| ATCGACATACAGTGTGGACG+AGG | 0.624451 | 1.3:-63076587 | MS.gene21587:CDS |
| TTAGCTCTAATCTAGAAACA+TGG | 0.627015 | 1.3:-63077011 | MS.gene21587:CDS |
| TAGCTCTAATCTAGAAACAT+GGG | 0.636260 | 1.3:-63077010 | MS.gene21587:CDS |
| GGAAACAAACTGTATTGCCT+TGG | 0.642701 | 1.3:-63076454 | MS.gene21587:CDS |
| ACAAACTGTATTGCCTTGGT+GGG | 0.646382 | 1.3:-63076450 | MS.gene21587:CDS |
| CATGAAGTTTCATCCCACCA+AGG | 0.728162 | 1.3:+63076437 | None:intergenic |
| ATATTCATCGACATACAGTG+TGG | 0.739211 | 1.3:-63076593 | MS.gene21587:CDS |
| TTACGGAAATGGAAACACGA+CGG | 0.772125 | 1.3:-63076515 | MS.gene21587:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATATTTGTATTTTTGA+GGG | - | chr1.3:63076586-63076605 | MS.gene21587:CDS | 10.0% |
| !!! | TATTTATATTTGTATTTTTG+AGG | - | chr1.3:63076585-63076604 | MS.gene21587:CDS | 10.0% |
| !! | AATTATTGAATGAAAGATAA+AGG | + | chr1.3:63076419-63076438 | None:intergenic | 15.0% |
| !! | ATAATTCAATTTATGTGAAT+TGG | + | chr1.3:63076494-63076513 | None:intergenic | 15.0% |
| !!! | TGTTTTTATTTATCCATATA+TGG | + | chr1.3:63076556-63076575 | None:intergenic | 15.0% |
| !! | ATGAATATTGAAAAACTGAA+AGG | + | chr1.3:63076755-63076774 | None:intergenic | 20.0% |
| !!! | AACAGATTTTATGCATTTAT+AGG | - | chr1.3:63076688-63076707 | MS.gene21587:intron | 20.0% |
| !!! | TATAGTTTATATTGCTGTTA+TGG | - | chr1.3:63077079-63077098 | MS.gene21587:CDS | 20.0% |
| !!! | TGATTGATTTTGATATGTTA+TGG | + | chr1.3:63076521-63076540 | None:intergenic | 20.0% |
| ! | GCTGATAAAAATTTCAAGAT+AGG | - | chr1.3:63076375-63076394 | MS.gene21587:CDS | 25.0% |
| ! | TAACAAAAAAAGTTCCCAAA+TGG | + | chr1.3:63076727-63076746 | None:intergenic | 25.0% |
| !! | GACAATTTTTACAACCATTT+GGG | - | chr1.3:63076710-63076729 | MS.gene21587:intron | 25.0% |
| ATTCTTCTTGTGACCATATA+TGG | - | chr1.3:63076540-63076559 | MS.gene21587:CDS | 30.0% | |
| ! | CTGTTATGGTAGCTTTTTAT+GGG | - | chr1.3:63077093-63077112 | MS.gene21587:CDS | 30.0% |
| ! | GGACAATTTTTACAACCATT+TGG | - | chr1.3:63076709-63076728 | MS.gene21587:intron | 30.0% |
| ! | TCTTTCTCTTCTGTTTTCTT+TGG | - | chr1.3:63076269-63076288 | MS.gene21587:CDS | 30.0% |
| !! | ACAAAAGTGTTGGCAAATTA+CGG | - | chr1.3:63076828-63076847 | MS.gene21587:intron | 30.0% |
| !! | TAGCTCTAATCTAGAAACAT+GGG | - | chr1.3:63076350-63076369 | MS.gene21587:CDS | 30.0% |
| !! | TTAGCTCTAATCTAGAAACA+TGG | - | chr1.3:63076349-63076368 | MS.gene21587:CDS | 30.0% |
| ACATACAAAATACCTGTCTC+CGG | + | chr1.3:63076886-63076905 | None:intergenic | 35.0% | |
| ATATTCATCGACATACAGTG+TGG | - | chr1.3:63076767-63076786 | MS.gene21587:intron | 35.0% | |
| CATGTTCATGTAGAAGATGA+CGG | - | chr1.3:63076942-63076961 | MS.gene21587:intron | 35.0% | |
| ! | ATGCAACACAACAAAAGTGT+TGG | - | chr1.3:63076818-63076837 | MS.gene21587:intron | 35.0% |
| ! | GCTGTTATGGTAGCTTTTTA+TGG | - | chr1.3:63077092-63077111 | MS.gene21587:CDS | 35.0% |
| !! | AAGAGCGCAGAATTTTCAAA+GGG | - | chr1.3:63077038-63077057 | MS.gene21587:CDS | 35.0% |
| AACAAACTGTATTGCCTTGG+TGG | - | chr1.3:63076909-63076928 | MS.gene21587:intron | 40.0% | |
| ACAAACTGTATTGCCTTGGT+GGG | - | chr1.3:63076910-63076929 | MS.gene21587:intron | 40.0% | |
| GGAAACAAACTGTATTGCCT+TGG | - | chr1.3:63076906-63076925 | MS.gene21587:intron | 40.0% | |
| TTACGGAAATGGAAACACGA+CGG | - | chr1.3:63076845-63076864 | MS.gene21587:intron | 40.0% | |
| ! | GGAGACAGGTATTTTGTATG+TGG | - | chr1.3:63076885-63076904 | MS.gene21587:intron | 40.0% |
| ! | GTGTTGGCAAATTACGGAAA+TGG | - | chr1.3:63076834-63076853 | MS.gene21587:intron | 40.0% |
| !! | GAAGAGCGCAGAATTTTCAA+AGG | - | chr1.3:63077037-63077056 | MS.gene21587:CDS | 40.0% |
| !!! | ACTGCTTTTGGTGCTAGATT+TGG | + | chr1.3:63076981-63077000 | None:intergenic | 40.0% |
| AGAGCTATCTCCAACAGTGT+AGG | + | chr1.3:63076319-63076338 | None:intergenic | 45.0% | |
| CAGTAGCTGGATCAGATCAA+AGG | - | chr1.3:63076997-63077016 | MS.gene21587:CDS | 45.0% | |
| CATGAAGTTTCATCCCACCA+AGG | + | chr1.3:63076926-63076945 | None:intergenic | 45.0% | |
| TACACTGTTGGAGATAGCTC+TGG | - | chr1.3:63076318-63076337 | MS.gene21587:CDS | 45.0% | |
| TCAGCAACTACCTACACTGT+TGG | - | chr1.3:63076306-63076325 | MS.gene21587:CDS | 45.0% | |
| TCTGCGCTCTTCTTTGTTGA+TGG | + | chr1.3:63077029-63077048 | None:intergenic | 45.0% | |
| ! | TCTGATCCAGCTACTGCTTT+TGG | + | chr1.3:63076993-63077012 | None:intergenic | 45.0% |
| ATCGACATACAGTGTGGACG+AGG | - | chr1.3:63076773-63076792 | MS.gene21587:intron | 50.0% | |
| CTAGCACCAAAAGCAGTAGC+TGG | - | chr1.3:63076984-63077003 | MS.gene21587:CDS | 50.0% | |
| !! | TGTTGGAGATAGCTCTGGCT+GGG | - | chr1.3:63076323-63076342 | MS.gene21587:CDS | 50.0% |
| CATTGACAAGAGCCGGAGAC+AGG | - | chr1.3:63076871-63076890 | MS.gene21587:intron | 55.0% | |
| CTGTCTCCGGCTCTTGTCAA+TGG | + | chr1.3:63076873-63076892 | None:intergenic | 55.0% | |
| !! | ACGGTGCCATTGACAAGAGC+CGG | - | chr1.3:63076864-63076883 | MS.gene21587:intron | 55.0% |
| !! | CTGTTGGAGATAGCTCTGGC+TGG | - | chr1.3:63076322-63076341 | MS.gene21587:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 63076252 | 63077130 | 63076252 | ID=MS.gene21587 |
| chr1.3 | mRNA | 63076252 | 63077130 | 63076252 | ID=MS.gene21587.t1;Parent=MS.gene21587 |
| chr1.3 | exon | 63076974 | 63077130 | 63076974 | ID=MS.gene21587.t1.exon1;Parent=MS.gene21587.t1 |
| chr1.3 | CDS | 63076974 | 63077130 | 63076974 | ID=cds.MS.gene21587.t1;Parent=MS.gene21587.t1 |
| chr1.3 | exon | 63076252 | 63076622 | 63076252 | ID=MS.gene21587.t1.exon2;Parent=MS.gene21587.t1 |
| chr1.3 | CDS | 63076252 | 63076622 | 63076252 | ID=cds.MS.gene21587.t1;Parent=MS.gene21587.t1 |
| Gene Sequence |
| Protein sequence |
