Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21601.t1 | XP_003591668.1 | 93.3 | 371 | 15 | 3 | 1 | 363 | 1 | 369 | 2.40E-189 | 671.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21601.t1 | Q9FLE8 | 43.4 | 166 | 74 | 3 | 217 | 362 | 223 | 388 | 9.5e-30 | 132.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21601.t1 | G7I314 | 93.3 | 371 | 15 | 3 | 1 | 363 | 1 | 369 | 1.7e-189 | 671.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055465 | MS.gene21601 | 0.801446 | 8.97E-49 | -1.69E-46 |
MS.gene055537 | MS.gene21601 | 0.800579 | 1.35E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21601.t1 | MTR_1g090400 | 92.958 | 355 | 15 | 3 | 17 | 363 | 17 | 369 | 0.0 | 641 |
MS.gene21601.t1 | MTR_7g106500 | 53.374 | 163 | 67 | 2 | 209 | 362 | 116 | 278 | 1.41e-56 | 186 |
MS.gene21601.t1 | MTR_7g104720 | 43.627 | 204 | 109 | 4 | 161 | 362 | 205 | 404 | 4.85e-48 | 167 |
MS.gene21601.t1 | MTR_5g083110 | 48.667 | 150 | 75 | 2 | 214 | 362 | 90 | 238 | 2.22e-44 | 153 |
MS.gene21601.t1 | MTR_8g099665 | 43.820 | 178 | 89 | 4 | 195 | 362 | 191 | 367 | 1.88e-42 | 152 |
MS.gene21601.t1 | MTR_1g051180 | 44.099 | 161 | 79 | 2 | 213 | 362 | 203 | 363 | 1.05e-40 | 147 |
MS.gene21601.t1 | MTR_3g017490 | 45.638 | 149 | 79 | 2 | 217 | 363 | 113 | 261 | 2.72e-39 | 141 |
MS.gene21601.t1 | MTR_8g038440 | 44.737 | 152 | 79 | 2 | 216 | 362 | 103 | 254 | 6.35e-38 | 137 |
MS.gene21601.t1 | MTR_8g106900 | 45.342 | 161 | 81 | 3 | 209 | 362 | 113 | 273 | 9.04e-38 | 137 |
MS.gene21601.t1 | MTR_7g090230 | 42.384 | 151 | 84 | 2 | 215 | 362 | 274 | 424 | 8.35e-36 | 135 |
MS.gene21601.t1 | MTR_5g072400 | 44.295 | 149 | 81 | 2 | 215 | 362 | 106 | 253 | 9.63e-36 | 131 |
MS.gene21601.t1 | MTR_3g465550 | 44.828 | 145 | 77 | 2 | 215 | 357 | 84 | 227 | 2.79e-35 | 129 |
MS.gene21601.t1 | MTR_3g071510 | 40.690 | 145 | 84 | 2 | 219 | 362 | 91 | 234 | 1.15e-34 | 128 |
MS.gene21601.t1 | MTR_7g010090 | 37.838 | 222 | 107 | 6 | 162 | 362 | 220 | 431 | 5.32e-31 | 122 |
MS.gene21601.t1 | MTR_6g011640 | 30.627 | 271 | 134 | 9 | 132 | 362 | 140 | 396 | 2.00e-27 | 112 |
MS.gene21601.t1 | MTR_3g030520 | 38.217 | 157 | 77 | 4 | 226 | 362 | 142 | 298 | 9.48e-22 | 94.4 |
MS.gene21601.t1 | MTR_7g079015 | 38.462 | 104 | 54 | 3 | 259 | 352 | 1 | 104 | 1.68e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21601.t1 | AT5G01420 | 38.391 | 435 | 160 | 14 | 1 | 362 | 1 | 400 | 3.60e-75 | 238 |
MS.gene21601.t1 | AT5G06470 | 50.617 | 162 | 70 | 2 | 209 | 362 | 79 | 238 | 5.31e-57 | 186 |
MS.gene21601.t1 | AT5G03870 | 37.654 | 324 | 160 | 9 | 68 | 362 | 73 | 383 | 3.33e-51 | 175 |
MS.gene21601.t1 | AT3G11773 | 54.225 | 142 | 64 | 1 | 221 | 362 | 9 | 149 | 2.93e-49 | 163 |
MS.gene21601.t1 | AT4G10630 | 47.024 | 168 | 75 | 3 | 209 | 362 | 166 | 333 | 2.07e-48 | 166 |
MS.gene21601.t1 | AT1G64500 | 43.195 | 169 | 86 | 3 | 204 | 362 | 197 | 365 | 2.21e-41 | 149 |
MS.gene21601.t1 | AT5G58530 | 43.396 | 159 | 79 | 3 | 215 | 363 | 109 | 266 | 1.48e-36 | 134 |
MS.gene21601.t1 | AT5G13810 | 44.000 | 150 | 82 | 2 | 215 | 362 | 123 | 272 | 2.08e-36 | 133 |
MS.gene21601.t1 | AT3G11773 | 43.312 | 157 | 65 | 2 | 206 | 362 | 67 | 199 | 1.08e-34 | 126 |
MS.gene21601.t1 | AT3G57070 | 42.105 | 152 | 84 | 2 | 215 | 362 | 264 | 415 | 2.65e-33 | 128 |
MS.gene21601.t1 | AT2G41330 | 45.517 | 145 | 76 | 2 | 221 | 362 | 256 | 400 | 4.37e-33 | 127 |
MS.gene21601.t1 | AT1G32760 | 44.118 | 170 | 85 | 4 | 203 | 362 | 144 | 313 | 2.69e-32 | 123 |
MS.gene21601.t1 | AT5G39865 | 43.373 | 166 | 74 | 3 | 217 | 362 | 223 | 388 | 5.88e-32 | 124 |
MS.gene21601.t1 | AT3G28850 | 42.135 | 178 | 71 | 5 | 217 | 362 | 249 | 426 | 1.13e-28 | 115 |
Find 65 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGATGCTTGTGGTGGTTTA+AGG | 0.148710 | 1.3:+63203920 | MS.gene21601:CDS |
TCTGATACATCAATAATTTC+TGG | 0.214591 | 1.3:-63203169 | None:intergenic |
TAATGGTAGCCATAAGATTT+TGG | 0.260789 | 1.3:+63203963 | MS.gene21601:CDS |
AATGGGTTTGGTGAAATCTT+TGG | 0.279170 | 1.3:-63203085 | None:intergenic |
GAGCTAATACTGATAGAAAA+AGG | 0.313758 | 1.3:+63203362 | MS.gene21601:CDS |
TTCTACACAACATCGCTTAG+AGG | 0.320109 | 1.3:+63203634 | MS.gene21601:CDS |
TTCTCCATCTAGCCACAATA+TGG | 0.324101 | 1.3:-63204045 | None:intergenic |
GTTCCAATGGATTGTTCTAA+TGG | 0.327957 | 1.3:+63203892 | MS.gene21601:CDS |
ATCGATGCACAAGGAGTATA+AGG | 0.339180 | 1.3:+63203738 | MS.gene21601:CDS |
GGATGAATTGTGGAGCCTTT+TGG | 0.348687 | 1.3:+63203759 | MS.gene21601:CDS |
AAATGAAGAAGAAATGGATT+TGG | 0.348854 | 1.3:+63203213 | MS.gene21601:CDS |
CGGAGACCGGATTTGAATTC+CGG | 0.349959 | 1.3:+63203421 | MS.gene21601:CDS |
TGAAGAAAATGAAGAAGAAA+TGG | 0.363113 | 1.3:+63203207 | MS.gene21601:CDS |
TCGAACGCAGCGAGCAGTTT+CGG | 0.363214 | 1.3:-63203457 | None:intergenic |
GTTGTTTCGGTTTCGAAGAT+TGG | 0.369695 | 1.3:+63203271 | MS.gene21601:CDS |
TCTCGAGAAACAAATGGGTT+TGG | 0.383676 | 1.3:-63203097 | None:intergenic |
CTTCAGGTAAAATCCATTGA+TGG | 0.409719 | 1.3:+63203046 | MS.gene21601:CDS |
AGAGTGATAGTTTGTCGTTC+CGG | 0.410128 | 1.3:+63203401 | MS.gene21601:CDS |
TTTGTTAAGGGAAGATATAT+AGG | 0.419790 | 1.3:+63203808 | MS.gene21601:CDS |
AATGCCAGAACGTATTCTTC+AGG | 0.424308 | 1.3:+63203030 | MS.gene21601:CDS |
TAGTCACAAAGGTGTTGTTT+CGG | 0.428450 | 1.3:+63203258 | MS.gene21601:CDS |
GAAAAGTTGCGAGAATTTGC+AGG | 0.429540 | 1.3:+63203132 | MS.gene21601:CDS |
AGAAGTTGAAGTTGACCCTT+TGG | 0.437150 | 1.3:+63203564 | MS.gene21601:CDS |
TTTCTATCAGTATTAGCTCT+TGG | 0.445564 | 1.3:-63203358 | None:intergenic |
GAAACTGCTCGCTGCGTTCG+AGG | 0.455728 | 1.3:+63203459 | MS.gene21601:CDS |
GAAGCTCAAATCAATCAAAC+AGG | 0.457778 | 1.3:+63202997 | MS.gene21601:CDS |
TAGTTTGTCGTTCCGGAGAC+CGG | 0.460484 | 1.3:+63203408 | MS.gene21601:CDS |
TTTACCTGAAGAATACGTTC+TGG | 0.475307 | 1.3:-63203034 | None:intergenic |
TGTTTGTTGTGTAATGAGAA+TGG | 0.484610 | 1.3:+63204009 | MS.gene21601:CDS |
AAAATCTGCATACCCATCAA+TGG | 0.498345 | 1.3:-63203059 | None:intergenic |
ACATCAATAATTTCTGGTTG+TGG | 0.503951 | 1.3:-63203163 | None:intergenic |
AATTCTTGAAGGGGTTCCAA+TGG | 0.506549 | 1.3:+63203879 | MS.gene21601:CDS |
AAGCTACCGGAATTCAAATC+CGG | 0.506585 | 1.3:-63203427 | None:intergenic |
GTGTAATGAGAATGGATTGA+TGG | 0.517662 | 1.3:+63204017 | MS.gene21601:CDS |
AGTTGAAGAAAATTCTTGAA+GGG | 0.524425 | 1.3:+63203869 | MS.gene21601:CDS |
CGGAATTCAAATCCGGTCTC+CGG | 0.526856 | 1.3:-63203420 | None:intergenic |
AAGTTGAAGAAAATTCTTGA+AGG | 0.526961 | 1.3:+63203868 | MS.gene21601:CDS |
AACTATCACTCTCAGAAAGA+AGG | 0.527002 | 1.3:-63203390 | None:intergenic |
TTCAGGTAAAATCCATTGAT+GGG | 0.528869 | 1.3:+63203047 | MS.gene21601:CDS |
GCACAACTTTCTCACCCAAA+AGG | 0.528869 | 1.3:-63203774 | None:intergenic |
GTTGAAGAAAATTCTTGAAG+GGG | 0.541357 | 1.3:+63203870 | MS.gene21601:CDS |
GTGAGAAAGTTGTGCCTCCA+AGG | 0.543640 | 1.3:+63203782 | MS.gene21601:CDS |
TGCGTTCGAGGAAGCTGTGA+AGG | 0.544838 | 1.3:+63203471 | MS.gene21601:CDS |
TCTCTTCAAATAACGCCAAA+GGG | 0.545226 | 1.3:-63203579 | None:intergenic |
AAGTGTCCACCAGGTGGTGA+TGG | 0.545637 | 1.3:+63203601 | MS.gene21601:CDS |
TTCTCTTCAAATAACGCCAA+AGG | 0.551664 | 1.3:-63203580 | None:intergenic |
AATGGACCTTGTGATGCTTG+TGG | 0.579467 | 1.3:+63203910 | MS.gene21601:CDS |
TTTCGGATCAAATAAGCTAC+CGG | 0.582175 | 1.3:-63203440 | None:intergenic |
GGTCCATTAGAACAATCCAT+TGG | 0.585251 | 1.3:-63203895 | None:intergenic |
TTGATGGTGTGTCCATATTG+TGG | 0.585754 | 1.3:+63204033 | MS.gene21601:CDS |
TAAGGCTTTGTATCTCGAGA+GGG | 0.594658 | 1.3:+63203711 | MS.gene21601:CDS |
GGACCTTGTGATGCTTGTGG+TGG | 0.596799 | 1.3:+63203913 | MS.gene21601:CDS |
TTAAGGCTTTGTATCTCGAG+AGG | 0.597422 | 1.3:+63203710 | MS.gene21601:CDS |
AAAGAGAATATTAGTCACAA+AGG | 0.597862 | 1.3:+63203247 | MS.gene21601:CDS |
ATCACAGTACCATCACCACC+TGG | 0.624770 | 1.3:-63203610 | None:intergenic |
TTTGAAGAGAAGTGTCCACC+AGG | 0.629966 | 1.3:+63203592 | MS.gene21601:CDS |
AGGAGTATAAGGATGAATTG+TGG | 0.635001 | 1.3:+63203749 | MS.gene21601:CDS |
TTAGCTCTTGGTAACAGTGG+TGG | 0.637058 | 1.3:-63203346 | None:intergenic |
AGTTGAGGAAGAGTTTACAA+AGG | 0.642245 | 1.3:+63203510 | MS.gene21601:CDS |
GTATTAGCTCTTGGTAACAG+TGG | 0.650696 | 1.3:-63203349 | None:intergenic |
AAACCACCACAAGCATCACA+AGG | 0.679920 | 1.3:-63203916 | None:intergenic |
ACAGTACCATCACCACCTGG+TGG | 0.680584 | 1.3:-63203607 | None:intergenic |
GAGGGATATATCGATGCACA+AGG | 0.688067 | 1.3:+63203729 | MS.gene21601:CDS |
AGGAAGCTGTGAAGGAACAG+AGG | 0.688483 | 1.3:+63203479 | MS.gene21601:CDS |
GAAGAGAAGTGTCCACCAGG+TGG | 0.706764 | 1.3:+63203595 | MS.gene21601:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GTTTCTTTTACAAAGTTTTA+AGG | + | chr1.3:63203693-63203712 | MS.gene21601:CDS | 20.0% |
! | AAAGAGAATATTAGTCACAA+AGG | + | chr1.3:63203247-63203266 | MS.gene21601:CDS | 25.0% |
! | AAGTTGAAGAAAATTCTTGA+AGG | + | chr1.3:63203868-63203887 | MS.gene21601:CDS | 25.0% |
! | AGTTGAAGAAAATTCTTGAA+GGG | + | chr1.3:63203869-63203888 | MS.gene21601:CDS | 25.0% |
! | TCTGATACATCAATAATTTC+TGG | - | chr1.3:63203172-63203191 | None:intergenic | 25.0% |
! | TGAAGAAAATGAAGAAGAAA+TGG | + | chr1.3:63203207-63203226 | MS.gene21601:CDS | 25.0% |
! | TTTGTTAAGGGAAGATATAT+AGG | + | chr1.3:63203808-63203827 | MS.gene21601:CDS | 25.0% |
!! | AAATGAAGAAGAAATGGATT+TGG | + | chr1.3:63203213-63203232 | MS.gene21601:CDS | 25.0% |
!!! | GTAAAAGAAACCGAATTTTT+TGG | - | chr1.3:63203684-63203703 | None:intergenic | 25.0% |
GAGCTAATACTGATAGAAAA+AGG | + | chr1.3:63203362-63203381 | MS.gene21601:CDS | 30.0% | |
GTTGAAGAAAATTCTTGAAG+GGG | + | chr1.3:63203870-63203889 | MS.gene21601:CDS | 30.0% | |
TTCAGGTAAAATCCATTGAT+GGG | + | chr1.3:63203047-63203066 | MS.gene21601:CDS | 30.0% | |
! | CATTTTCTCGAGAAACAAAT+GGG | - | chr1.3:63203105-63203124 | None:intergenic | 30.0% |
! | TAATGGTAGCCATAAGATTT+TGG | + | chr1.3:63203963-63203982 | MS.gene21601:CDS | 30.0% |
! | TCATTTTCTCGAGAAACAAA+TGG | - | chr1.3:63203106-63203125 | None:intergenic | 30.0% |
! | TTTCTATCAGTATTAGCTCT+TGG | - | chr1.3:63203361-63203380 | None:intergenic | 30.0% |
!! | ACATCAATAATTTCTGGTTG+TGG | - | chr1.3:63203166-63203185 | None:intergenic | 30.0% |
!! | GTGATGTGTTTTAAGTGTAA+TGG | + | chr1.3:63203946-63203965 | MS.gene21601:CDS | 30.0% |
!! | TGTTTGTTGTGTAATGAGAA+TGG | + | chr1.3:63204009-63204028 | MS.gene21601:CDS | 30.0% |
AAAATCTGCATACCCATCAA+TGG | - | chr1.3:63203062-63203081 | None:intergenic | 35.0% | |
AACTATCACTCTCAGAAAGA+AGG | - | chr1.3:63203393-63203412 | None:intergenic | 35.0% | |
AGTTGAGGAAGAGTTTACAA+AGG | + | chr1.3:63203510-63203529 | MS.gene21601:CDS | 35.0% | |
CTTCAGGTAAAATCCATTGA+TGG | + | chr1.3:63203046-63203065 | MS.gene21601:CDS | 35.0% | |
GAAGCTCAAATCAATCAAAC+AGG | + | chr1.3:63202997-63203016 | MS.gene21601:CDS | 35.0% | |
TCGAAGACTGCCAAAAAATT+CGG | + | chr1.3:63203671-63203690 | MS.gene21601:CDS | 35.0% | |
TCTCTTCAAATAACGCCAAA+GGG | - | chr1.3:63203582-63203601 | None:intergenic | 35.0% | |
TTCTCTTCAAATAACGCCAA+AGG | - | chr1.3:63203583-63203602 | None:intergenic | 35.0% | |
TTTACCTGAAGAATACGTTC+TGG | - | chr1.3:63203037-63203056 | None:intergenic | 35.0% | |
TTTCGGATCAAATAAGCTAC+CGG | - | chr1.3:63203443-63203462 | None:intergenic | 35.0% | |
! | AGGAGTATAAGGATGAATTG+TGG | + | chr1.3:63203749-63203768 | MS.gene21601:CDS | 35.0% |
! | CCTTTTCAGCCAAAATCTTA+TGG | - | chr1.3:63203975-63203994 | None:intergenic | 35.0% |
!! | AATGGGTTTGGTGAAATCTT+TGG | - | chr1.3:63203088-63203107 | None:intergenic | 35.0% |
!! | GTGTAATGAGAATGGATTGA+TGG | + | chr1.3:63204017-63204036 | MS.gene21601:CDS | 35.0% |
!! | GTTCCAATGGATTGTTCTAA+TGG | + | chr1.3:63203892-63203911 | MS.gene21601:CDS | 35.0% |
!! | TAGTCACAAAGGTGTTGTTT+CGG | + | chr1.3:63203258-63203277 | MS.gene21601:CDS | 35.0% |
!!! | AATTTTTTGGCAGTCTTCGA+AGG | - | chr1.3:63203671-63203690 | None:intergenic | 35.0% |
!!! | CCATAAGATTTTGGCTGAAA+AGG | + | chr1.3:63203972-63203991 | MS.gene21601:CDS | 35.0% |
!!! | GTTTTGAGTTTGCATGAACA+AGG | + | chr1.3:63203844-63203863 | MS.gene21601:CDS | 35.0% |
AAGCTACCGGAATTCAAATC+CGG | - | chr1.3:63203430-63203449 | None:intergenic | 40.0% | |
AATGCCAGAACGTATTCTTC+AGG | + | chr1.3:63203030-63203049 | MS.gene21601:CDS | 40.0% | |
AATTCTTGAAGGGGTTCCAA+TGG | + | chr1.3:63203879-63203898 | MS.gene21601:CDS | 40.0% | |
ACAGAGGAAAAACAGAGTTG+AGG | + | chr1.3:63203495-63203514 | MS.gene21601:CDS | 40.0% | |
AGAAGTTGAAGTTGACCCTT+TGG | + | chr1.3:63203564-63203583 | MS.gene21601:CDS | 40.0% | |
CTTCCCTTAACAAAAAGCCT+TGG | - | chr1.3:63203802-63203821 | None:intergenic | 40.0% | |
GAAAAGTTGCGAGAATTTGC+AGG | + | chr1.3:63203132-63203151 | MS.gene21601:CDS | 40.0% | |
GGTCCATTAGAACAATCCAT+TGG | - | chr1.3:63203898-63203917 | None:intergenic | 40.0% | |
TTCTACACAACATCGCTTAG+AGG | + | chr1.3:63203634-63203653 | MS.gene21601:CDS | 40.0% | |
! | AGAGTGATAGTTTGTCGTTC+CGG | + | chr1.3:63203401-63203420 | MS.gene21601:CDS | 40.0% |
! | ATCGATGCACAAGGAGTATA+AGG | + | chr1.3:63203738-63203757 | MS.gene21601:CDS | 40.0% |
! | CCTCCAAGGCTTTTTGTTAA+GGG | + | chr1.3:63203796-63203815 | MS.gene21601:CDS | 40.0% |
! | GATGAATTGTGGAGCCTTTT+GGG | + | chr1.3:63203760-63203779 | MS.gene21601:CDS | 40.0% |
! | GTATTAGCTCTTGGTAACAG+TGG | - | chr1.3:63203352-63203371 | None:intergenic | 40.0% |
! | GTTGTTTCGGTTTCGAAGAT+TGG | + | chr1.3:63203271-63203290 | MS.gene21601:CDS | 40.0% |
! | TAAGGCTTTGTATCTCGAGA+GGG | + | chr1.3:63203711-63203730 | MS.gene21601:CDS | 40.0% |
! | TCTCGAGAAACAAATGGGTT+TGG | - | chr1.3:63203100-63203119 | None:intergenic | 40.0% |
! | TTAAGGCTTTGTATCTCGAG+AGG | + | chr1.3:63203710-63203729 | MS.gene21601:CDS | 40.0% |
!! | TTGATGGTGTGTCCATATTG+TGG | + | chr1.3:63204033-63204052 | MS.gene21601:CDS | 40.0% |
AAACCACCACAAGCATCACA+AGG | - | chr1.3:63203919-63203938 | None:intergenic | 45.0% | |
AATGGACCTTGTGATGCTTG+TGG | + | chr1.3:63203910-63203929 | MS.gene21601:CDS | 45.0% | |
CCCTTAACAAAAAGCCTTGG+AGG | - | chr1.3:63203799-63203818 | None:intergenic | 45.0% | |
GAGGGATATATCGATGCACA+AGG | + | chr1.3:63203729-63203748 | MS.gene21601:CDS | 45.0% | |
GCACAACTTTCTCACCCAAA+AGG | - | chr1.3:63203777-63203796 | None:intergenic | 45.0% | |
GTGATGCTTGTGGTGGTTTA+AGG | + | chr1.3:63203920-63203939 | MS.gene21601:CDS | 45.0% | |
! | GCCTCCAAGGCTTTTTGTTA+AGG | + | chr1.3:63203795-63203814 | MS.gene21601:CDS | 45.0% |
! | GGATGAATTGTGGAGCCTTT+TGG | + | chr1.3:63203759-63203778 | MS.gene21601:CDS | 45.0% |
! | TTAGCTCTTGGTAACAGTGG+TGG | - | chr1.3:63203349-63203368 | None:intergenic | 45.0% |
!! | TTTGAAGAGAAGTGTCCACC+AGG | + | chr1.3:63203592-63203611 | MS.gene21601:CDS | 45.0% |
AGGAAGCTGTGAAGGAACAG+AGG | + | chr1.3:63203479-63203498 | MS.gene21601:CDS | 50.0% | |
ATCACAGTACCATCACCACC+TGG | - | chr1.3:63203613-63203632 | None:intergenic | 50.0% | |
CGGAATTCAAATCCGGTCTC+CGG | - | chr1.3:63203423-63203442 | None:intergenic | 50.0% | |
CGGAGACCGGATTTGAATTC+CGG | + | chr1.3:63203421-63203440 | MS.gene21601:CDS | 50.0% | |
GTGAGAAAGTTGTGCCTCCA+AGG | + | chr1.3:63203782-63203801 | MS.gene21601:CDS | 50.0% | |
! | TAGTTTGTCGTTCCGGAGAC+CGG | + | chr1.3:63203408-63203427 | MS.gene21601:CDS | 50.0% |
AAGTGTCCACCAGGTGGTGA+TGG | + | chr1.3:63203601-63203620 | MS.gene21601:CDS | 55.0% | |
ACAGTACCATCACCACCTGG+TGG | - | chr1.3:63203610-63203629 | None:intergenic | 55.0% | |
GGACCTTGTGATGCTTGTGG+TGG | + | chr1.3:63203913-63203932 | MS.gene21601:CDS | 55.0% | |
TCGAACGCAGCGAGCAGTTT+CGG | - | chr1.3:63203460-63203479 | None:intergenic | 55.0% | |
TGCGTTCGAGGAAGCTGTGA+AGG | + | chr1.3:63203471-63203490 | MS.gene21601:CDS | 55.0% | |
!! | GAAGAGAAGTGTCCACCAGG+TGG | + | chr1.3:63203595-63203614 | MS.gene21601:CDS | 55.0% |
GAAACTGCTCGCTGCGTTCG+AGG | + | chr1.3:63203459-63203478 | MS.gene21601:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 63202968 | 63204059 | 63202968 | ID=MS.gene21601 |
chr1.3 | mRNA | 63202968 | 63204059 | 63202968 | ID=MS.gene21601.t1;Parent=MS.gene21601 |
chr1.3 | exon | 63202968 | 63204059 | 63202968 | ID=MS.gene21601.t1.exon1;Parent=MS.gene21601.t1 |
chr1.3 | CDS | 63202968 | 63204059 | 63202968 | ID=cds.MS.gene21601.t1;Parent=MS.gene21601.t1 |
Gene Sequence |
Protein sequence |