Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21612.t1 | OIV90611.1 | 83 | 811 | 110 | 6 | 2 | 787 | 7 | 814 | 0.00E+00 | 1255.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21612.t1 | Q9LZD3 | 76.3 | 612 | 132 | 4 | 5 | 615 | 8 | 607 | 3.8e-257 | 889.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21612.t1 | G7I413 | 96.6 | 615 | 20 | 1 | 1 | 615 | 5 | 618 | 0.0e+00 | 1106.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056387 | MS.gene21612 | 0.804481 | 2.12E-49 | -1.69E-46 |
MS.gene056618 | MS.gene21612 | -0.824945 | 6.13E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21612.t1 | MTR_1g090620 | 97.886 | 615 | 12 | 1 | 1 | 615 | 5 | 618 | 0.0 | 1247 |
MS.gene21612.t1 | MTR_1g057560 | 71.661 | 614 | 159 | 3 | 6 | 619 | 9 | 607 | 0.0 | 877 |
MS.gene21612.t1 | MTR_1g090630 | 98.305 | 177 | 3 | 0 | 611 | 787 | 1 | 177 | 1.95e-122 | 365 |
MS.gene21612.t1 | MTR_4g103540 | 31.756 | 655 | 384 | 13 | 5 | 619 | 34 | 665 | 2.49e-105 | 338 |
MS.gene21612.t1 | MTR_8g021330 | 35.034 | 588 | 310 | 11 | 93 | 636 | 41 | 600 | 1.86e-103 | 332 |
MS.gene21612.t1 | MTR_5g073450 | 30.484 | 620 | 377 | 11 | 19 | 615 | 22 | 610 | 1.32e-96 | 314 |
MS.gene21612.t1 | MTR_3g031130 | 31.023 | 606 | 361 | 9 | 19 | 606 | 22 | 588 | 1.79e-84 | 281 |
MS.gene21612.t1 | MTR_7g013770 | 31.176 | 510 | 301 | 7 | 125 | 605 | 151 | 639 | 3.76e-81 | 274 |
MS.gene21612.t1 | MTR_6g033310 | 30.286 | 525 | 313 | 8 | 115 | 617 | 211 | 704 | 2.97e-79 | 270 |
MS.gene21612.t1 | MTR_3g025900 | 30.989 | 526 | 322 | 8 | 98 | 605 | 79 | 581 | 2.53e-78 | 265 |
MS.gene21612.t1 | MTR_2g096230 | 28.369 | 564 | 343 | 7 | 63 | 606 | 34 | 556 | 1.32e-77 | 262 |
MS.gene21612.t1 | MTR_7g026630 | 29.558 | 565 | 341 | 13 | 102 | 632 | 116 | 657 | 1.05e-76 | 261 |
MS.gene21612.t1 | MTR_5g073460 | 32.941 | 425 | 256 | 4 | 204 | 615 | 261 | 669 | 1.08e-74 | 257 |
MS.gene21612.t1 | MTR_4g062330 | 28.705 | 533 | 331 | 5 | 96 | 605 | 74 | 580 | 2.16e-73 | 251 |
MS.gene21612.t1 | MTR_1g067460 | 30.101 | 495 | 295 | 10 | 127 | 600 | 100 | 564 | 2.92e-70 | 243 |
MS.gene21612.t1 | MTR_1g067480 | 28.183 | 589 | 364 | 11 | 56 | 623 | 35 | 585 | 8.03e-69 | 238 |
MS.gene21612.t1 | MTR_1g117090 | 30.498 | 482 | 267 | 8 | 183 | 615 | 183 | 645 | 1.09e-66 | 234 |
MS.gene21612.t1 | MTR_1g009620 | 25.337 | 667 | 392 | 14 | 5 | 619 | 23 | 635 | 3.12e-59 | 214 |
MS.gene21612.t1 | MTR_5g073620 | 33.333 | 324 | 203 | 3 | 196 | 513 | 278 | 594 | 1.34e-52 | 198 |
MS.gene21612.t1 | MTR_5g073620 | 30.734 | 218 | 128 | 3 | 392 | 609 | 848 | 1042 | 1.34e-21 | 101 |
MS.gene21612.t1 | MTR_5g074130 | 29.369 | 412 | 263 | 7 | 204 | 606 | 254 | 646 | 6.48e-52 | 194 |
MS.gene21612.t1 | MTR_5g073480 | 32.997 | 297 | 184 | 2 | 190 | 471 | 245 | 541 | 1.18e-43 | 168 |
MS.gene21612.t1 | MTR_4g008260 | 23.529 | 663 | 394 | 18 | 1 | 606 | 1 | 607 | 1.45e-40 | 159 |
MS.gene21612.t1 | MTR_3g464010 | 26.118 | 425 | 274 | 10 | 197 | 609 | 246 | 642 | 9.93e-39 | 154 |
MS.gene21612.t1 | MTR_1g017910 | 25.248 | 404 | 269 | 10 | 229 | 609 | 268 | 661 | 2.44e-38 | 153 |
MS.gene21612.t1 | MTR_5g073920 | 27.123 | 424 | 274 | 8 | 204 | 619 | 248 | 644 | 1.03e-37 | 151 |
MS.gene21612.t1 | MTR_5g093530 | 28.955 | 335 | 192 | 5 | 278 | 606 | 249 | 543 | 2.46e-35 | 142 |
MS.gene21612.t1 | MTR_5g073900 | 25.189 | 397 | 229 | 11 | 219 | 603 | 1 | 341 | 1.14e-27 | 115 |
MS.gene21612.t1 | MTR_0229s0040 | 31.034 | 174 | 107 | 1 | 434 | 607 | 18 | 178 | 3.92e-26 | 108 |
MS.gene21612.t1 | MTR_5g073780 | 31.193 | 218 | 127 | 3 | 392 | 609 | 3 | 197 | 2.80e-25 | 105 |
MS.gene21612.t1 | MTR_2g041650 | 20.955 | 649 | 366 | 13 | 1 | 606 | 1 | 545 | 2.30e-23 | 105 |
MS.gene21612.t1 | MTR_5g073770 | 30.978 | 184 | 121 | 2 | 196 | 373 | 191 | 374 | 2.86e-23 | 103 |
MS.gene21612.t1 | MTR_5g073490 | 29.371 | 143 | 71 | 2 | 464 | 606 | 11 | 123 | 3.90e-17 | 79.7 |
MS.gene21612.t1 | MTR_5g073820 | 27.232 | 224 | 107 | 5 | 249 | 470 | 263 | 432 | 2.54e-14 | 76.6 |
MS.gene21612.t1 | MTR_5g073960 | 28.758 | 153 | 100 | 3 | 204 | 355 | 253 | 397 | 6.29e-12 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21612.t1 | AT5G03540 | 77.614 | 612 | 124 | 4 | 5 | 615 | 8 | 607 | 0.0 | 941 |
MS.gene21612.t1 | AT5G03540 | 73.824 | 638 | 128 | 5 | 5 | 615 | 8 | 633 | 0.0 | 924 |
MS.gene21612.t1 | AT5G52340 | 69.821 | 613 | 167 | 5 | 3 | 615 | 6 | 600 | 0.0 | 874 |
MS.gene21612.t1 | AT5G03540 | 77.535 | 503 | 100 | 4 | 114 | 615 | 2 | 492 | 0.0 | 768 |
MS.gene21612.t1 | AT5G52350 | 55.042 | 476 | 196 | 3 | 142 | 617 | 99 | 556 | 0.0 | 538 |
MS.gene21612.t1 | AT5G50380 | 32.917 | 641 | 365 | 13 | 5 | 605 | 24 | 639 | 3.04e-105 | 338 |
MS.gene21612.t1 | AT1G72470 | 34.057 | 599 | 318 | 12 | 69 | 615 | 25 | 598 | 9.61e-103 | 330 |
MS.gene21612.t1 | AT3G14090 | 34.578 | 509 | 290 | 7 | 128 | 606 | 87 | 582 | 6.18e-98 | 317 |
MS.gene21612.t1 | AT1G54090 | 33.556 | 599 | 316 | 10 | 63 | 606 | 9 | 580 | 1.97e-96 | 313 |
MS.gene21612.t1 | AT5G58430 | 31.061 | 660 | 402 | 11 | 3 | 650 | 5 | 623 | 8.72e-95 | 309 |
MS.gene21612.t1 | AT5G13990 | 32.110 | 545 | 321 | 13 | 93 | 617 | 145 | 660 | 9.84e-83 | 278 |
MS.gene21612.t1 | AT5G13150 | 31.670 | 521 | 297 | 9 | 125 | 617 | 134 | 623 | 1.21e-82 | 277 |
MS.gene21612.t1 | AT5G04830 | 68.000 | 175 | 56 | 0 | 611 | 785 | 1 | 175 | 8.14e-82 | 259 |
MS.gene21612.t1 | AT5G04830 | 68.000 | 175 | 56 | 0 | 611 | 785 | 1 | 175 | 8.14e-82 | 259 |
MS.gene21612.t1 | AT1G07725 | 30.524 | 534 | 305 | 8 | 98 | 605 | 72 | 565 | 1.31e-79 | 268 |
MS.gene21612.t1 | AT1G07000 | 28.039 | 617 | 376 | 10 | 2 | 606 | 4 | 564 | 9.26e-79 | 265 |
MS.gene21612.t1 | AT3G29400 | 29.257 | 646 | 385 | 9 | 1 | 605 | 6 | 620 | 3.54e-75 | 257 |
MS.gene21612.t1 | AT5G59730 | 30.237 | 549 | 309 | 13 | 96 | 610 | 62 | 570 | 1.38e-74 | 255 |
MS.gene21612.t1 | AT5G59730 | 30.237 | 549 | 309 | 13 | 96 | 610 | 62 | 570 | 2.38e-74 | 254 |
MS.gene21612.t1 | AT2G28640 | 30.200 | 500 | 291 | 7 | 125 | 606 | 94 | 553 | 1.12e-73 | 252 |
MS.gene21612.t1 | AT4G31540 | 26.167 | 707 | 404 | 15 | 3 | 645 | 11 | 663 | 1.86e-66 | 234 |
MS.gene21612.t1 | AT2G39380 | 26.758 | 583 | 360 | 10 | 63 | 616 | 42 | 586 | 3.70e-66 | 232 |
MS.gene21612.t1 | AT3G09520 | 28.317 | 505 | 309 | 7 | 131 | 614 | 107 | 579 | 5.66e-65 | 228 |
MS.gene21612.t1 | AT5G61010 | 29.655 | 435 | 268 | 5 | 184 | 605 | 190 | 599 | 1.91e-63 | 224 |
MS.gene21612.t1 | AT5G61010 | 29.655 | 435 | 268 | 5 | 184 | 605 | 190 | 599 | 1.91e-63 | 224 |
MS.gene21612.t1 | AT3G09530 | 26.730 | 636 | 396 | 14 | 58 | 664 | 27 | 621 | 3.83e-62 | 221 |
MS.gene21612.t1 | AT3G55150 | 24.956 | 565 | 376 | 5 | 63 | 606 | 42 | 579 | 5.45e-60 | 215 |
MS.gene21612.t1 | AT2G28650 | 31.266 | 403 | 244 | 4 | 212 | 605 | 152 | 530 | 2.46e-59 | 211 |
MS.gene21612.t1 | AT1G51640 | 27.805 | 410 | 273 | 9 | 217 | 612 | 200 | 600 | 2.19e-37 | 149 |
Find 158 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGTCCATTGTGATTGTTTC+TGG | 0.064763 | 1.3:-63269737 | None:intergenic |
ATGAATCCAGTTTCCGATTT+TGG | 0.109048 | 1.3:-63266742 | None:intergenic |
CATTTCCACCTTCAAATTCT+TGG | 0.164069 | 1.3:-63268281 | None:intergenic |
TCTTCAATGCTTATCTATTC+AGG | 0.197596 | 1.3:+63269500 | MS.gene21612:CDS |
AAAGCTACAATGGGAGATTT+TGG | 0.212232 | 1.3:+63266716 | MS.gene21612:CDS |
TTCTGGGGATCTCTTGCTTT+TGG | 0.234725 | 1.3:-63267461 | None:intergenic |
AGATCATTCGTGAAACGTTT+TGG | 0.274941 | 1.3:+63269825 | MS.gene21612:CDS |
GACAACGTTGTCACCATTCT+TGG | 0.281309 | 1.3:+63263424 | MS.gene21612:CDS |
AACTCTATGCGGCCTTCTTC+AGG | 0.283131 | 1.3:+63265657 | MS.gene21612:CDS |
AGATTAGGACACATTCTATT+AGG | 0.291663 | 1.3:+63263669 | MS.gene21612:intron |
GCCAAGCAATGGCAGCTTTA+CGG | 0.310362 | 1.3:-63273555 | None:intergenic |
ACGGTTTCTCGATTAGAAAT+TGG | 0.320559 | 1.3:-63273536 | None:intergenic |
TGCCCCAGATGCTTCCTTTG+AGG | 0.337499 | 1.3:+63271777 | MS.gene21612:CDS |
CTCATGTGTTTATGAGGTTC+GGG | 0.344969 | 1.3:+63273618 | MS.gene21612:CDS |
TAAACAACACTATAAAATCT+TGG | 0.356459 | 1.3:+63273340 | MS.gene21612:CDS |
AAACAACACTATAAAATCTT+GGG | 0.358378 | 1.3:+63273341 | MS.gene21612:CDS |
AGGATTTGCTTGGGGATGAT+TGG | 0.359981 | 1.3:+63268568 | MS.gene21612:CDS |
GTCTCTATGCTACTTAGCTT+TGG | 0.363405 | 1.3:+63267427 | MS.gene21612:CDS |
GAAGAAGGCCGCATAGAGTT+TGG | 0.364783 | 1.3:-63265654 | None:intergenic |
TGGAAGCCAAAATCGGAAAC+TGG | 0.368171 | 1.3:+63266736 | MS.gene21612:CDS |
GCAATTCAATATTATGTTTG+AGG | 0.371379 | 1.3:+63269707 | MS.gene21612:CDS |
ACTCATGTGTTTATGAGGTT+CGG | 0.375084 | 1.3:+63273617 | MS.gene21612:CDS |
GCGAGTTGCGAGAATCTCTT+AGG | 0.377525 | 1.3:+63269769 | MS.gene21612:CDS |
TGTAGAAGTGGCAAAATTCT+TGG | 0.381055 | 1.3:-63265780 | None:intergenic |
CATACCCTTGTGCACGCATA+AGG | 0.386726 | 1.3:-63271804 | None:intergenic |
TGAAGGCTTTGATTCACTTT+CGG | 0.388357 | 1.3:+63267372 | MS.gene21612:CDS |
CAGGTAAAATTATTGTTTGC+TGG | 0.393369 | 1.3:+63267322 | MS.gene21612:intron |
CAACGTTGTCTGTGATAGTT+TGG | 0.395369 | 1.3:-63263411 | None:intergenic |
GATTCTCGCAACTCGCTGTC+TGG | 0.398208 | 1.3:-63269762 | None:intergenic |
GGATCCTCAAAGGAAGCATC+TGG | 0.400063 | 1.3:-63271781 | None:intergenic |
GGATTTGCTTGGGGATGATT+GGG | 0.403240 | 1.3:+63268569 | MS.gene21612:CDS |
ATCCTAGTTATTCAAACAGT+TGG | 0.403386 | 1.3:-63273647 | None:intergenic |
TTCTTCCAATACATTAGAAC+GGG | 0.409731 | 1.3:-63266646 | None:intergenic |
CTGAAGCCAAGGATTTGCTT+GGG | 0.410453 | 1.3:+63268559 | MS.gene21612:CDS |
CAAACAGCGCAGGAGACCTT+TGG | 0.411441 | 1.3:+63267742 | MS.gene21612:CDS |
ATTCAGGGACTTGCCTCATC+TGG | 0.414388 | 1.3:+63269516 | MS.gene21612:CDS |
CTTCAATGCTTATCTATTCA+GGG | 0.422022 | 1.3:+63269501 | MS.gene21612:CDS |
GGACTTGCCTCATCTGGTGG+TGG | 0.424626 | 1.3:+63269522 | MS.gene21612:CDS |
TTCTTGGAAAAGCTGTTTCA+AGG | 0.430170 | 1.3:-63268265 | None:intergenic |
ATCAGCTATTATTATCGTAC+AGG | 0.431116 | 1.3:+63265475 | MS.gene21612:CDS |
GGTAATGAGGGTGAACATAA+TGG | 0.432381 | 1.3:+63265687 | MS.gene21612:CDS |
CTTGGGGAAGGATATAGATA+TGG | 0.432777 | 1.3:+63273358 | MS.gene21612:CDS |
GTTTGTGATCAGATATTTGA+AGG | 0.434799 | 1.3:+63267355 | MS.gene21612:CDS |
AGAAAATTTGCAATGGATGC+TGG | 0.436427 | 1.3:+63270903 | MS.gene21612:intron |
ATACCCTTGTGCACGCATAA+GGG | 0.439382 | 1.3:-63271803 | None:intergenic |
GCATAGTTACAGTAGCTAGC+TGG | 0.446461 | 1.3:-63268311 | None:intergenic |
GCAGGTGGTGATGGTGGAAC+TGG | 0.451456 | 1.3:+63269555 | MS.gene21612:CDS |
AAGTCTTATCAATATTCTCA+TGG | 0.452813 | 1.3:-63263697 | None:intergenic |
ATCAATACAAAAGAAATGCT+TGG | 0.453550 | 1.3:+63268628 | MS.gene21612:CDS |
GACTTGCCTCATCTGGTGGT+GGG | 0.455414 | 1.3:+63269523 | MS.gene21612:CDS |
TCAATACAAAAGAAATGCTT+GGG | 0.461872 | 1.3:+63268629 | MS.gene21612:CDS |
GAATATTGATAAGACTTTGA+AGG | 0.462604 | 1.3:+63263703 | MS.gene21612:CDS |
TAGCAACTCATGTGTTTATG+AGG | 0.462800 | 1.3:+63273612 | MS.gene21612:CDS |
AGTAGTAATGCAGGTGGTGA+TGG | 0.465892 | 1.3:+63269546 | MS.gene21612:CDS |
AAAGTGAAATTGACCTGAGT+TGG | 0.466548 | 1.3:-63263490 | None:intergenic |
GGAAGCCCGTTCTAATGTAT+TGG | 0.468191 | 1.3:+63266641 | MS.gene21612:CDS |
ACCGTAAAGCTGCCATTGCT+TGG | 0.469791 | 1.3:+63273554 | MS.gene21612:CDS |
AATATAGTTTCACCAGGAAA+AGG | 0.472637 | 1.3:+63273181 | MS.gene21612:CDS |
CAGCATTATTGTTGTCAGAA+TGG | 0.479922 | 1.3:-63265722 | None:intergenic |
CACAGTTACTCACAATATAC+AGG | 0.480356 | 1.3:+63265841 | MS.gene21612:CDS |
TCTGAAGCCAAGGATTTGCT+TGG | 0.482743 | 1.3:+63268558 | MS.gene21612:CDS |
TTGAAGAGACTCTCTCATCA+TGG | 0.483497 | 1.3:-63263383 | None:intergenic |
TTCAGGATCACCTGGTAATG+AGG | 0.489335 | 1.3:+63265674 | MS.gene21612:CDS |
TCCATTGTGATTGTTTCTGG+TGG | 0.491110 | 1.3:-63269734 | None:intergenic |
TCACTTTGATCAATATCGTC+AGG | 0.494553 | 1.3:+63263745 | MS.gene21612:CDS |
ATCATCCCCAAGCAAATCCT+TGG | 0.501684 | 1.3:-63268565 | None:intergenic |
AAGTTATTCGCCATGAGGAC+TGG | 0.509945 | 1.3:+63273414 | MS.gene21612:CDS |
AAGAGGCGCTCGGGTTCCAC+AGG | 0.511939 | 1.3:-63265621 | None:intergenic |
ACTATATTGTCAGATCTGTT+CGG | 0.515069 | 1.3:+63268427 | MS.gene21612:CDS |
AGGCAATCAAAGAGGCGCTC+GGG | 0.516928 | 1.3:-63265630 | None:intergenic |
CGATGTTCAAAAGCTACAAT+GGG | 0.517888 | 1.3:+63266707 | MS.gene21612:CDS |
CGGCCTTCTTCAGGATCACC+TGG | 0.519910 | 1.3:+63265666 | MS.gene21612:CDS |
ACGAAGAATATGAGGAATGA+TGG | 0.519999 | 1.3:-63271062 | None:intergenic |
AGCTTTAGTTAACAAACTAC+TGG | 0.524192 | 1.3:-63265427 | None:intergenic |
GCTCAGCAAATGATTGAAGC+TGG | 0.528097 | 1.3:+63265810 | MS.gene21612:CDS |
CATAGTTACAGTAGCTAGCT+GGG | 0.531525 | 1.3:-63268310 | None:intergenic |
AACCGCCATGCGTCCAACTC+AGG | 0.531883 | 1.3:+63263477 | MS.gene21612:CDS |
GATCCTCAAAGGAAGCATCT+GGG | 0.532003 | 1.3:-63271780 | None:intergenic |
AATTATTGTTTGCTGGTGAG+AGG | 0.533969 | 1.3:+63267329 | MS.gene21612:CDS |
TTATGTTCACCCTCATTACC+AGG | 0.534172 | 1.3:-63265684 | None:intergenic |
TTTCTTCCAATACATTAGAA+CGG | 0.536401 | 1.3:-63266647 | None:intergenic |
AGCAGAAAGACGGTGGTCAA+AGG | 0.537160 | 1.3:-63263449 | None:intergenic |
GAGTTGCAGAAATGACTCGC+AGG | 0.539872 | 1.3:+63273579 | MS.gene21612:CDS |
GTTTAGTGAGTCAAAGATTG+TGG | 0.542684 | 1.3:+63273141 | MS.gene21612:CDS |
GCTTACAGACGAAGAATATG+AGG | 0.543719 | 1.3:-63271070 | None:intergenic |
AGTCTTATCAATATTCTCAT+GGG | 0.544077 | 1.3:-63263696 | None:intergenic |
CTATTTCAGATCTGAAGCCA+AGG | 0.549916 | 1.3:+63268548 | MS.gene21612:intron |
ACGATGTTCAAAAGCTACAA+TGG | 0.552013 | 1.3:+63266706 | MS.gene21612:CDS |
CGCTTCTTCAAAATCTCCAA+AGG | 0.555240 | 1.3:-63267758 | None:intergenic |
CAGGGACTTGCCTCATCTGG+TGG | 0.556427 | 1.3:+63269519 | MS.gene21612:CDS |
TCTTTCCAGAAAATTTGCAA+TGG | 0.557794 | 1.3:+63270896 | MS.gene21612:intron |
ATTCTTGGTGGTATAAGAGC+GGG | 0.557992 | 1.3:-63265765 | None:intergenic |
GATCCCCTTATGCGTGCACA+AGG | 0.558146 | 1.3:+63271799 | MS.gene21612:CDS |
CAAAAGAAATGCTTGGGCAA+AGG | 0.560762 | 1.3:+63268635 | MS.gene21612:CDS |
TTCACGAATGATCTGTAGGC+AGG | 0.561888 | 1.3:-63269816 | None:intergenic |
TACCCTTGTGCACGCATAAG+GGG | 0.564830 | 1.3:-63271802 | None:intergenic |
GTGGTCAAAGGAACCAAGAA+TGG | 0.565526 | 1.3:-63263437 | None:intergenic |
AGCATTCTACTCTCTCCCTA+AGG | 0.568779 | 1.3:+63272751 | MS.gene21612:CDS |
TTACCAGGTGATCCTGAAGA+AGG | 0.571119 | 1.3:-63265669 | None:intergenic |
AAGGCAATCAAAGAGGCGCT+CGG | 0.575952 | 1.3:-63265631 | None:intergenic |
AAGACTTGCGCAAACAGCGC+AGG | 0.577067 | 1.3:+63267732 | MS.gene21612:CDS |
AATCAAGTTGTCTGTTGAGG+AGG | 0.578173 | 1.3:+63273388 | MS.gene21612:CDS |
TTAATAACATAGCTAGTCAA+AGG | 0.580431 | 1.3:-63267829 | None:intergenic |
ACAAAGACTGCAGTTACAGA+TGG | 0.582353 | 1.3:+63267796 | MS.gene21612:CDS |
GGTGGTGGGAGTAGTAATGC+AGG | 0.583367 | 1.3:+63269537 | MS.gene21612:CDS |
TGCAATAAGAGACGCTGCGA+CGG | 0.583612 | 1.3:+63267699 | MS.gene21612:CDS |
GATTTCAAAATCGCGAGCCG+TGG | 0.585966 | 1.3:-63271752 | None:intergenic |
TGCGAGTCATTTCTGCAACT+CGG | 0.586117 | 1.3:-63273577 | None:intergenic |
TCAGGATCACCTGGTAATGA+GGG | 0.589847 | 1.3:+63265675 | MS.gene21612:CDS |
ACGCATAAGGGGATCCTCAA+AGG | 0.592676 | 1.3:-63271791 | None:intergenic |
ATCCTCAAAGGAAGCATCTG+GGG | 0.592747 | 1.3:-63271779 | None:intergenic |
TTAATACATACCAGTCCTCA+TGG | 0.594288 | 1.3:-63273424 | None:intergenic |
GCTAATCAAGTTGTCTGTTG+AGG | 0.594764 | 1.3:+63273385 | MS.gene21612:CDS |
ATTGTTGTCAGAATGGTGGT+TGG | 0.594926 | 1.3:-63265715 | None:intergenic |
TGAGCTAAATCATGTAGAAG+TGG | 0.595008 | 1.3:-63265792 | None:intergenic |
TCTGCAACTCGGCCAAGCAA+TGG | 0.600748 | 1.3:-63273566 | None:intergenic |
AATGCAAGAGCTGCATTCAG+AGG | 0.600834 | 1.3:+63267516 | MS.gene21612:CDS |
AGTAATGCAGGTGGTGATGG+TGG | 0.603314 | 1.3:+63269549 | MS.gene21612:CDS |
ACGTTTCACGAATGATCTGT+AGG | 0.603500 | 1.3:-63269820 | None:intergenic |
ACACTATAAAATCTTGGGGA+AGG | 0.605202 | 1.3:+63273346 | MS.gene21612:CDS |
ATCAAGTTGTCTGTTGAGGA+GGG | 0.610196 | 1.3:+63273389 | MS.gene21612:CDS |
CAAGAGCACTAGTTAAAGAG+AGG | 0.611140 | 1.3:+63269595 | MS.gene21612:CDS |
AACAACACTATAAAATCTTG+GGG | 0.612536 | 1.3:+63273342 | MS.gene21612:CDS |
AAGGCCGCATAGAGTTTGGA+AGG | 0.614139 | 1.3:-63265650 | None:intergenic |
AGTTGCAGAAATGACTCGCA+GGG | 0.615808 | 1.3:+63273580 | MS.gene21612:CDS |
TGAAGCCAAGGATTTGCTTG+GGG | 0.616640 | 1.3:+63268560 | MS.gene21612:CDS |
GAAGAAAATATAGTTTCACC+AGG | 0.619089 | 1.3:+63273175 | MS.gene21612:CDS |
CGGTTTCAAGAGCAGAAAGA+CGG | 0.627542 | 1.3:-63263459 | None:intergenic |
GTAGGCAGGTAACAAGACTT+CGG | 0.629917 | 1.3:-63269802 | None:intergenic |
CATTATTGTTGTCAGAATGG+TGG | 0.631171 | 1.3:-63265719 | None:intergenic |
ATTGCCTTCCAAACTCTATG+CGG | 0.632226 | 1.3:+63265646 | MS.gene21612:CDS |
TGTGTTTATGAGGTTCGGGA+AGG | 0.634450 | 1.3:+63273622 | MS.gene21612:CDS |
ACTACTCCCACCACCAGATG+AGG | 0.635705 | 1.3:-63269529 | None:intergenic |
TTGGAAAAGCTGTTTCAAGG+TGG | 0.637095 | 1.3:-63268262 | None:intergenic |
ATGATTGGGTACAAAGACAT+AGG | 0.637558 | 1.3:+63268583 | MS.gene21612:CDS |
CAGATATGGATCATGTGCCA+CGG | 0.643521 | 1.3:+63271735 | MS.gene21612:intron |
CTGTATATTGTGAGTAACTG+TGG | 0.645157 | 1.3:-63265840 | None:intergenic |
AGAAGTGGCAAAATTCTTGG+TGG | 0.646828 | 1.3:-63265777 | None:intergenic |
ATTGGGTACAAAGACATAGG+AGG | 0.648878 | 1.3:+63268586 | MS.gene21612:CDS |
AAAGCTGTTTCAAGGTGGAA+CGG | 0.655457 | 1.3:-63268257 | None:intergenic |
TCCACCAGAAACAATCACAA+TGG | 0.657029 | 1.3:+63269733 | MS.gene21612:CDS |
GGTGGAACTGGAAGTAGTAG+TGG | 0.657683 | 1.3:+63269567 | MS.gene21612:CDS |
GCTTTGCAAATCAATCTAGA+CGG | 0.660922 | 1.3:+63268345 | MS.gene21612:CDS |
CTTGGTGGTATAAGAGCGGG+AGG | 0.662439 | 1.3:-63265762 | None:intergenic |
GGTGGGAGTAGTAATGCAGG+TGG | 0.666620 | 1.3:+63269540 | MS.gene21612:CDS |
AGTTTGGAAGGCAATCAAAG+AGG | 0.666748 | 1.3:-63265638 | None:intergenic |
ATTGACCTGAGTTGGACGCA+TGG | 0.667277 | 1.3:-63263482 | None:intergenic |
AGTTTCACCAGGAAAAGGAG+AGG | 0.669375 | 1.3:+63273186 | MS.gene21612:CDS |
ACGTGACTACAGCAAACCTG+TGG | 0.673150 | 1.3:+63265605 | MS.gene21612:intron |
AATTCTTGGTGGTATAAGAG+CGG | 0.676798 | 1.3:-63265766 | None:intergenic |
ATATTGTGAGTAACTGTGGT+CGG | 0.684757 | 1.3:-63265836 | None:intergenic |
GGGTAAAGTTATTCGCCATG+AGG | 0.689924 | 1.3:+63273409 | MS.gene21612:CDS |
ATATTGTCAGATCTGTTCGG+AGG | 0.690173 | 1.3:+63268430 | MS.gene21612:CDS |
TTTCAAGAGCAGAAAGACGG+TGG | 0.694987 | 1.3:-63263456 | None:intergenic |
GACCTGAGTTGGACGCATGG+CGG | 0.698388 | 1.3:-63263479 | None:intergenic |
AAGATGGGTATAGCAATGGG+TGG | 0.707175 | 1.3:+63263334 | None:intergenic |
ATCCCCTTATGCGTGCACAA+GGG | 0.714021 | 1.3:+63271800 | MS.gene21612:CDS |
GTTGCAGAAATGACTCGCAG+GGG | 0.731921 | 1.3:+63273581 | MS.gene21612:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 63263349 | 63273658 | 63263349 | ID=MS.gene21612 |
chr1.3 | mRNA | 63263349 | 63273658 | 63263349 | ID=MS.gene21612.t1;Parent=MS.gene21612 |
chr1.3 | exon | 63263349 | 63263498 | 63263349 | ID=MS.gene21612.t1.exon1;Parent=MS.gene21612.t1 |
chr1.3 | CDS | 63263349 | 63263498 | 63263349 | ID=cds.MS.gene21612.t1;Parent=MS.gene21612.t1 |
chr1.3 | exon | 63263671 | 63263766 | 63263671 | ID=MS.gene21612.t1.exon2;Parent=MS.gene21612.t1 |
chr1.3 | CDS | 63263671 | 63263766 | 63263671 | ID=cds.MS.gene21612.t1;Parent=MS.gene21612.t1 |
chr1.3 | exon | 63265291 | 63265496 | 63265291 | ID=MS.gene21612.t1.exon3;Parent=MS.gene21612.t1 |
chr1.3 | CDS | 63265291 | 63265496 | 63265291 | ID=cds.MS.gene21612.t1;Parent=MS.gene21612.t1 |
chr1.3 | exon | 63265617 | 63265862 | 63265617 | ID=MS.gene21612.t1.exon4;Parent=MS.gene21612.t1 |
chr1.3 | CDS | 63265617 | 63265862 | 63265617 | ID=cds.MS.gene21612.t1;Parent=MS.gene21612.t1 |
chr1.3 | exon | 63266641 | 63266779 | 63266641 | ID=MS.gene21612.t1.exon5;Parent=MS.gene21612.t1 |
chr1.3 | CDS | 63266641 | 63266779 | 63266641 | ID=cds.MS.gene21612.t1;Parent=MS.gene21612.t1 |
chr1.3 | exon | 63267325 | 63267537 | 63267325 | ID=MS.gene21612.t1.exon6;Parent=MS.gene21612.t1 |
chr1.3 | CDS | 63267325 | 63267537 | 63267325 | ID=cds.MS.gene21612.t1;Parent=MS.gene21612.t1 |
chr1.3 | exon | 63267667 | 63267872 | 63267667 | ID=MS.gene21612.t1.exon7;Parent=MS.gene21612.t1 |
chr1.3 | CDS | 63267667 | 63267872 | 63267667 | ID=cds.MS.gene21612.t1;Parent=MS.gene21612.t1 |
chr1.3 | exon | 63268254 | 63268451 | 63268254 | ID=MS.gene21612.t1.exon8;Parent=MS.gene21612.t1 |
chr1.3 | CDS | 63268254 | 63268451 | 63268254 | ID=cds.MS.gene21612.t1;Parent=MS.gene21612.t1 |
chr1.3 | exon | 63268557 | 63268656 | 63268557 | ID=MS.gene21612.t1.exon9;Parent=MS.gene21612.t1 |
chr1.3 | CDS | 63268557 | 63268656 | 63268557 | ID=cds.MS.gene21612.t1;Parent=MS.gene21612.t1 |
chr1.3 | exon | 63269498 | 63269616 | 63269498 | ID=MS.gene21612.t1.exon10;Parent=MS.gene21612.t1 |
chr1.3 | CDS | 63269498 | 63269616 | 63269498 | ID=cds.MS.gene21612.t1;Parent=MS.gene21612.t1 |
chr1.3 | exon | 63269701 | 63269847 | 63269701 | ID=MS.gene21612.t1.exon11;Parent=MS.gene21612.t1 |
chr1.3 | CDS | 63269701 | 63269847 | 63269701 | ID=cds.MS.gene21612.t1;Parent=MS.gene21612.t1 |
chr1.3 | exon | 63270905 | 63270924 | 63270905 | ID=MS.gene21612.t1.exon12;Parent=MS.gene21612.t1 |
chr1.3 | CDS | 63270905 | 63270924 | 63270905 | ID=cds.MS.gene21612.t1;Parent=MS.gene21612.t1 |
chr1.3 | exon | 63271002 | 63271086 | 63271002 | ID=MS.gene21612.t1.exon13;Parent=MS.gene21612.t1 |
chr1.3 | CDS | 63271002 | 63271086 | 63271002 | ID=cds.MS.gene21612.t1;Parent=MS.gene21612.t1 |
chr1.3 | exon | 63271738 | 63271821 | 63271738 | ID=MS.gene21612.t1.exon14;Parent=MS.gene21612.t1 |
chr1.3 | CDS | 63271738 | 63271821 | 63271738 | ID=cds.MS.gene21612.t1;Parent=MS.gene21612.t1 |
chr1.3 | exon | 63272733 | 63272772 | 63272733 | ID=MS.gene21612.t1.exon15;Parent=MS.gene21612.t1 |
chr1.3 | CDS | 63272733 | 63272772 | 63272733 | ID=cds.MS.gene21612.t1;Parent=MS.gene21612.t1 |
chr1.3 | exon | 63273139 | 63273207 | 63273139 | ID=MS.gene21612.t1.exon16;Parent=MS.gene21612.t1 |
chr1.3 | CDS | 63273139 | 63273207 | 63273139 | ID=cds.MS.gene21612.t1;Parent=MS.gene21612.t1 |
chr1.3 | exon | 63273326 | 63273435 | 63273326 | ID=MS.gene21612.t1.exon17;Parent=MS.gene21612.t1 |
chr1.3 | CDS | 63273326 | 63273435 | 63273326 | ID=cds.MS.gene21612.t1;Parent=MS.gene21612.t1 |
chr1.3 | exon | 63273523 | 63273658 | 63273523 | ID=MS.gene21612.t1.exon18;Parent=MS.gene21612.t1 |
chr1.3 | CDS | 63273523 | 63273658 | 63273523 | ID=cds.MS.gene21612.t1;Parent=MS.gene21612.t1 |
Gene Sequence |
Protein sequence |