AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056387


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056387.t1 MTR_4g067320 99.167 240 2 0 1 240 1 240 9.11e-179 490
MS.gene056387.t1 MTR_4g067320 98.750 240 2 1 1 240 1 239 5.88e-176 483
MS.gene056387.t1 MTR_2g099010 69.262 244 70 3 1 240 1 243 8.49e-117 333
MS.gene056387.t1 MTR_2g099010 68.852 244 70 4 1 240 1 242 3.03e-114 327
MS.gene056387.t1 MTR_2g099010 61.702 188 67 3 57 240 31 217 1.71e-72 220
MS.gene056387.t1 MTR_2g073370 60.550 109 43 0 1 109 1 109 1.02e-42 146
MS.gene056387.t1 MTR_1g023260 34.799 273 133 8 1 240 1 261 1.04e-37 133
MS.gene056387.t1 MTR_3g117320 54.717 106 47 1 1 105 1 106 1.80e-35 126
MS.gene056387.t1 MTR_1g023260 57.407 108 39 2 1 104 1 105 1.89e-35 125
MS.gene056387.t1 MTR_4g071200 49.558 113 56 1 1 112 1 113 2.20e-35 125
MS.gene056387.t1 MTR_3g113070 52.830 106 48 1 1 104 1 106 1.44e-32 118
MS.gene056387.t1 MTR_5g021580 42.537 134 71 4 1 131 1 131 5.50e-25 97.8
MS.gene056387.t1 MTR_5g021580 42.537 134 71 4 1 131 1 131 5.95e-25 97.8
MS.gene056387.t1 MTR_7g018170 43.478 92 43 1 5 96 26 108 9.14e-19 84.7
MS.gene056387.t1 MTR_3g105710 43.750 96 45 1 5 100 6 92 1.87e-18 82.4
MS.gene056387.t1 MTR_1g013450 42.391 92 44 1 5 96 6 88 2.48e-18 82.4
MS.gene056387.t1 MTR_4g128930 39.130 92 47 1 5 96 22 104 1.20e-16 78.6
MS.gene056387.t1 MTR_7g108150 41.837 98 47 2 5 102 20 107 9.25e-16 75.9
MS.gene056387.t1 MTR_5g069480 35.417 96 53 1 1 96 1 87 4.67e-14 71.2
MS.gene056387.t1 MTR_5g069480 35.417 96 53 1 1 96 1 87 5.30e-14 70.1
MS.gene056387.t1 MTR_3g082630 38.542 96 49 2 1 96 1 86 6.52e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056387.t1 AT1G06040 62.500 248 85 4 1 240 1 248 8.69e-105 303
MS.gene056387.t1 AT2G31380 59.836 244 88 7 1 240 1 238 3.08e-92 271
MS.gene056387.t1 AT1G06040 66.071 168 51 3 1 162 1 168 2.66e-70 213
MS.gene056387.t1 AT1G78600 56.800 125 52 1 1 125 1 123 5.56e-42 145
MS.gene056387.t1 AT1G78600 56.800 125 52 1 1 125 1 123 1.19e-41 144
MS.gene056387.t1 AT4G10240 47.619 147 64 4 1 141 1 140 2.37e-36 126
MS.gene056387.t1 AT1G75540 56.522 115 47 2 1 112 1 115 5.46e-36 130
MS.gene056387.t1 AT4G39070 45.890 146 76 2 1 145 1 144 8.20e-34 122
MS.gene056387.t1 AT2G21320 50.000 104 49 2 1 104 1 101 4.25e-25 97.8
MS.gene056387.t1 AT4G38960 42.424 132 68 3 1 127 1 129 6.36e-25 97.4
MS.gene056387.t1 AT4G38960 42.424 132 68 3 1 127 1 129 6.36e-25 97.4
MS.gene056387.t1 AT5G15850 33.143 175 90 4 5 163 12 175 8.05e-20 87.4
MS.gene056387.t1 AT2G24790 43.478 92 43 1 5 96 8 90 1.20e-18 82.0
MS.gene056387.t1 AT2G24790 43.478 92 43 1 5 96 8 90 1.31e-18 83.2
MS.gene056387.t1 AT3G02380 43.478 92 43 1 5 96 16 98 1.55e-17 80.9
MS.gene056387.t1 AT5G15840 35.200 125 72 1 5 129 20 135 2.35e-17 79.3
MS.gene056387.t1 AT5G15840 35.200 125 72 1 5 129 20 135 2.40e-17 80.5
MS.gene056387.t1 AT4G38960 32.000 175 68 4 1 127 1 172 5.61e-17 77.4
MS.gene056387.t1 AT5G24930 41.667 96 47 1 5 100 6 92 7.75e-17 79.0
MS.gene056387.t1 AT2G47890 42.353 85 40 1 5 89 13 88 2.19e-14 71.6
MS.gene056387.t1 AT2G47890 42.353 85 40 1 5 89 13 88 2.23e-14 71.6
MS.gene056387.t1 AT2G47890 42.353 85 40 1 5 89 13 88 4.23e-14 69.7
MS.gene056387.t1 AT1G28050 34.653 101 57 1 2 102 6 97 3.88e-13 68.6
MS.gene056387.t1 AT1G68190 34.375 96 52 2 1 96 39 123 7.23e-13 67.8
MS.gene056387.t1 AT1G68190 34.375 96 52 2 1 96 10 94 8.09e-13 67.4
MS.gene056387.t1 AT1G68190 34.375 96 52 2 1 96 10 94 8.09e-13 67.4
MS.gene056387.t1 AT2G33500 34.000 100 57 1 3 102 10 100 1.20e-12 67.0
MS.gene056387.t1 AT2G33500 34.000 100 57 1 3 102 10 100 1.24e-12 67.0
MS.gene056387.t1 AT3G07650 37.647 85 44 1 1 85 1 76 1.39e-12 66.6
MS.gene056387.t1 AT3G07650 37.647 85 44 1 1 85 1 76 1.39e-12 66.6
MS.gene056387.t1 AT3G07650 37.647 85 44 1 1 85 1 76 1.39e-12 66.6
MS.gene056387.t1 AT3G07650 37.647 85 44 1 1 85 1 76 1.39e-12 66.6
MS.gene056387.t1 AT5G48250 32.653 98 55 2 1 96 1 89 1.95e-11 63.5
MS.gene056387.t1 AT5G57660 33.333 93 49 2 4 96 21 100 2.65e-11 62.8

Find 51 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGTAGCTGGTAGTCTTTC+TGG 0.109250 4.1:+33990336 MS.gene056387:CDS
TTGGGCTGTTGATGATTTCT+TGG 0.216145 4.1:+33990518 MS.gene056387:CDS
GATGATTTCTTGGAATTAAC+TGG 0.278064 4.1:+33990528 MS.gene056387:CDS
CAGAAGCAATCCATGGAGTT+TGG 0.289917 4.1:+33991134 MS.gene056387:intron
ACTTGGCAGATATCACATTT+AGG 0.310599 4.1:-33989349 None:intergenic
GTAAGACATATAAGATTTAG+AGG 0.311347 4.1:-33991279 None:intergenic
ACACTGCCAGCATGCATTAC+TGG 0.340744 4.1:-33991242 None:intergenic
TACCGGTATCCGTGTGGCTT+TGG 0.344898 4.1:+33990380 MS.gene056387:CDS
ACGGGAACTTGTTGCGTGTC+TGG 0.356267 4.1:-33990453 None:intergenic
TAAAGTTGTCTTACCTTGTC+TGG 0.367338 4.1:-33990561 None:intergenic
TGCCTAGTTTCGCATCCTCT+TGG 0.378192 4.1:+33990499 MS.gene056387:CDS
GCCTAGTTTCGCATCCTCTT+GGG 0.385410 4.1:+33990500 MS.gene056387:CDS
AGACTACCAGCTACATGAAT+TGG 0.402532 4.1:-33990330 None:intergenic
CTAAACCTTCCTGAGGAAAC+TGG 0.421815 4.1:-33991196 None:intergenic
TAAGATTTAGAGGCTTTGTA+AGG 0.437114 4.1:-33991269 None:intergenic
CGATGATGATGAGCACTTCA+TGG 0.441777 4.1:+33991334 MS.gene056387:CDS
CATGTGCTTTAGCCGAGATC+TGG 0.447542 4.1:-33991359 None:intergenic
TGGAGTTTGGAGAGCTTGAA+TGG 0.451045 4.1:+33991147 MS.gene056387:CDS
TGTTGCGTGTCTGGATTAGA+TGG 0.466529 4.1:-33990444 None:intergenic
AGCCAAAGCCACACGGATAC+CGG 0.489165 4.1:-33990382 None:intergenic
GCACAACAAATCACCGTAGC+AGG 0.495596 4.1:-33989220 None:intergenic
CTGGATTAGATGGTTCAACT+TGG 0.497438 4.1:-33990434 None:intergenic
TTTCAATGACCAGTTTCCTC+AGG 0.500064 4.1:+33991187 MS.gene056387:CDS
CTGAGGAGGAGAAACTTTGA+CGG 0.504586 4.1:-33990472 None:intergenic
CACTTCATGGTGCCAGATCT+CGG 0.507917 4.1:+33991347 MS.gene056387:CDS
TACCGGTAGCAAGGAAGCGC+TGG 0.512715 4.1:-33990365 None:intergenic
CTTGAATGGCTATCGGATGC+AGG 0.516958 4.1:+33991161 MS.gene056387:CDS
TCAACACAAAATATGAAAGC+TGG 0.522233 4.1:-33990273 None:intergenic
GCCCAAGAGGATGCGAAACT+AGG 0.529539 4.1:-33990501 None:intergenic
TCATGTCGGACTTCAATCCT+AGG 0.531676 4.1:-33991308 None:intergenic
AGACCGAGCACTGTTCTGTA+AGG 0.533969 4.1:+33990296 MS.gene056387:CDS
AGCTTGCTAGCAAGCATCAA+AGG 0.550543 4.1:+33989296 MS.gene056387:CDS
TTCAAGCTCTCCAAACTCCA+TGG 0.552963 4.1:-33991144 None:intergenic
CACCAGCGCTTCCTTGCTAC+CGG 0.553385 4.1:+33990363 MS.gene056387:CDS
TGGAGAGCTTGAATGGCTAT+CGG 0.557707 4.1:+33991154 MS.gene056387:CDS
AAACTAGGCACTTGCTGAGG+AGG 0.565089 4.1:-33990486 None:intergenic
CAACTTCCAGTAATGCATGC+TGG 0.570734 4.1:+33991236 MS.gene056387:CDS
TGAGGAGGAGAAACTTTGAC+GGG 0.575513 4.1:-33990471 None:intergenic
AATGACCAGTTTCCTCAGGA+AGG 0.575639 4.1:+33991191 MS.gene056387:CDS
CATCATCATCGTCTTCATGT+CGG 0.589449 4.1:-33991322 None:intergenic
CGGTAGCAAGGAAGCGCTGG+TGG 0.597801 4.1:-33990362 None:intergenic
GAAATCATCAACAGCCCAAG+AGG 0.601713 4.1:-33990514 None:intergenic
GATGAACCAATTCATGTAGC+TGG 0.610215 4.1:+33990324 MS.gene056387:CDS
TGGCTTTGATTCACCAGACA+AGG 0.610663 4.1:+33990548 MS.gene056387:CDS
GCATGCATTACTGGAAGTTG+CGG 0.617995 4.1:-33991233 None:intergenic
CCACACGGATACCGGTAGCA+AGG 0.621121 4.1:-33990374 None:intergenic
AACTAGAAGCCAAAGCCACA+CGG 0.621527 4.1:-33990389 None:intergenic
AGTCCTTACAGAACAGTGCT+CGG 0.631276 4.1:-33990299 None:intergenic
CCTTGCTACCGGTATCCGTG+TGG 0.645262 4.1:+33990374 MS.gene056387:CDS
GCGAAACTAGGCACTTGCTG+AGG 0.649769 4.1:-33990489 None:intergenic
GCTGCAGCTAAACCTTCCTG+AGG 0.726877 4.1:-33991203 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTAAAATAATATTTT+TGG + chr4.1:33989493-33989512 MS.gene056387:intron 0.0%
!! AATTAAAAAAAAGACTTTAA+AGG - chr4.1:33989480-33989499 None:intergenic 10.0%
!! CAAATATTAAAACAATATAA+AGG - chr4.1:33991091-33991110 None:intergenic 10.0%
!!! AATAATATATTGAATTTTGT+AGG + chr4.1:33989537-33989556 MS.gene056387:intron 10.0%
!!! CTTTATATTGTTTTAATATT+TGG + chr4.1:33991089-33991108 MS.gene056387:intron 10.0%
!! AATAAATTATTATGAGAGTT+TGG + chr4.1:33989624-33989643 MS.gene056387:intron 15.0%
!! ATATTAAAACAATATAAAGG+AGG - chr4.1:33991088-33991107 None:intergenic 15.0%
!! CTTCTTATTCAAAATAAATA+GGG - chr4.1:33990001-33990020 None:intergenic 15.0%
!! TACTATTAACATAATCATAA+AGG - chr4.1:33991049-33991068 None:intergenic 15.0%
!! ATGTGCAAAAAAAAATAACA+TGG - chr4.1:33989679-33989698 None:intergenic 20.0%
!! GCTTCTTATTCAAAATAAAT+AGG - chr4.1:33990002-33990021 None:intergenic 20.0%
!! TGTGCAAAAAAAAATAACAT+GGG - chr4.1:33989678-33989697 None:intergenic 20.0%
!!! ATTTTGTAGGATTTAAGATT+AGG + chr4.1:33989550-33989569 MS.gene056387:intron 20.0%
!!! TCTGTTTATATGAATTTTTG+AGG + chr4.1:33990962-33990981 MS.gene056387:intron 20.0%
!!! TTTTGTAGGATTTAAGATTA+GGG + chr4.1:33989551-33989570 MS.gene056387:intron 20.0%
! AAAATCTTCATGAATCTACA+TGG - chr4.1:33989722-33989741 None:intergenic 25.0%
! AATCAATGTCTTGGAATAAA+TGG + chr4.1:33989854-33989873 MS.gene056387:intron 25.0%
! ATAATTGTCTTTGATTGGAT+TGG + chr4.1:33989790-33989809 MS.gene056387:intron 25.0%
! ATAGATAGAAATCAATGTCT+TGG + chr4.1:33989845-33989864 MS.gene056387:intron 25.0%
! ATCCTATAGTTATAAGATGA+AGG - chr4.1:33990250-33990269 None:intergenic 25.0%
! ATGCTATAATTGTCTTTGAT+TGG + chr4.1:33989785-33989804 MS.gene056387:intron 25.0%
! CATTATTTCATTAAACGAAC+TGG - chr4.1:33990890-33990909 None:intergenic 25.0%
! GTAAGACATATAAGATTTAG+AGG - chr4.1:33991282-33991301 None:intergenic 25.0%
! TCATATAAACAGAAACCAAA+CGG - chr4.1:33990955-33990974 None:intergenic 25.0%
! TGAGAGATTATGATTTATGA+TGG + chr4.1:33990639-33990658 MS.gene056387:intron 25.0%
!! AGATTATGATTTATGATGGA+GGG + chr4.1:33990643-33990662 MS.gene056387:intron 25.0%
!!! AAGACATTGATTTCTATCTA+TGG - chr4.1:33989846-33989865 None:intergenic 25.0%
!!! ATTTTGAATAAGAAGCATCT+AGG + chr4.1:33990006-33990025 MS.gene056387:intron 25.0%
AAAATTGCAATATTCGGATC+GGG - chr4.1:33990139-33990158 None:intergenic 30.0%
AAATGCTAAATCTGATGTAC+TGG - chr4.1:33990049-33990068 None:intergenic 30.0%
AATGCTAAATCTGATGTACT+GGG - chr4.1:33990048-33990067 None:intergenic 30.0%
AGCAAAAACAAAACCATACT+TGG - chr4.1:33989369-33989388 None:intergenic 30.0%
ATATGTCTTACAAAAAGCCT+AGG + chr4.1:33991291-33991310 MS.gene056387:CDS 30.0%
CGAAACACAATTCAAAATTC+CGG - chr4.1:33990164-33990183 None:intergenic 30.0%
GAAAATTGCAATATTCGGAT+CGG - chr4.1:33990140-33990159 None:intergenic 30.0%
GAGATTATGATTTATGATGG+AGG + chr4.1:33990642-33990661 MS.gene056387:intron 30.0%
GATGATTTCTTGGAATTAAC+TGG + chr4.1:33990528-33990547 MS.gene056387:CDS 30.0%
TCAACACAAAATATGAAAGC+TGG - chr4.1:33990276-33990295 None:intergenic 30.0%
! TAAGATTTAGAGGCTTTGTA+AGG - chr4.1:33991272-33991291 None:intergenic 30.0%
! TGTTGATAAATGATCTGTGA+AGG + chr4.1:33990738-33990757 MS.gene056387:intron 30.0%
! TTGCTTCTGAAAAGAAAGAA+AGG - chr4.1:33991123-33991142 None:intergenic 30.0%
! TTTTGAATTGTGTTTCGAAC+TGG + chr4.1:33990167-33990186 MS.gene056387:intron 30.0%
!! ACACTTTTGATCGATTCTTT+AGG - chr4.1:33989971-33989990 None:intergenic 30.0%
!!! ATGGATGATTTTACTGACTT+TGG + chr4.1:33990224-33990243 MS.gene056387:intron 30.0%
AATGTGATATCTGCCAAGTA+TGG + chr4.1:33989353-33989372 MS.gene056387:intron 35.0%
ACTTGGCAGATATCACATTT+AGG - chr4.1:33989352-33989371 None:intergenic 35.0%
CCGGTGAAAATTGCAATATT+CGG - chr4.1:33990145-33990164 None:intergenic 35.0%
GGCCTTCATCTTATAACTAT+AGG + chr4.1:33990245-33990264 MS.gene056387:intron 35.0%
TAAAGTTGTCTTACCTTGTC+TGG - chr4.1:33990564-33990583 None:intergenic 35.0%
! CCGAATATTGCAATTTTCAC+CGG + chr4.1:33990142-33990161 MS.gene056387:intron 35.0%
! GTTGAAGTATTTGCTGAACA+TGG + chr4.1:33990205-33990224 MS.gene056387:intron 35.0%
! TTCTTTTCAGAAGCAATCCA+TGG + chr4.1:33991127-33991146 MS.gene056387:intron 35.0%
!! TTGGCTTTTCTCATTGTCTT+TGG - chr4.1:33990418-33990437 None:intergenic 35.0%
AACCATATTTGCACAGGCAA+TGG + chr4.1:33991003-33991022 MS.gene056387:intron 40.0%
ACTTCGAACCATATTTGCAC+AGG + chr4.1:33990997-33991016 MS.gene056387:intron 40.0%
AGACTACCAGCTACATGAAT+TGG - chr4.1:33990333-33990352 None:intergenic 40.0%
ATACCACTAGACTAACCCTT+AGG + chr4.1:33989929-33989948 MS.gene056387:intron 40.0%
ATCTGTGAAGGAAACCAACT+TGG + chr4.1:33990750-33990769 MS.gene056387:intron 40.0%
CATCATCATCGTCTTCATGT+CGG - chr4.1:33991325-33991344 None:intergenic 40.0%
CCAAACTAACCCACCAAAAT+GGG - chr4.1:33990850-33990869 None:intergenic 40.0%
GATGAACCAATTCATGTAGC+TGG + chr4.1:33990324-33990343 MS.gene056387:CDS 40.0%
GATGATGTTGTGTTTGTAGC+AGG + chr4.1:33989876-33989895 MS.gene056387:intron 40.0%
TACCACTAGACTAACCCTTA+GGG + chr4.1:33989930-33989949 MS.gene056387:intron 40.0%
TACCATTGCCTGTGCAAATA+TGG - chr4.1:33991008-33991027 None:intergenic 40.0%
TATTTGCACAGGCAATGGTA+AGG + chr4.1:33991008-33991027 MS.gene056387:intron 40.0%
TCTGTGAAGGAAACCAACTT+GGG + chr4.1:33990751-33990770 MS.gene056387:intron 40.0%
TTTCAATGACCAGTTTCCTC+AGG + chr4.1:33991187-33991206 MS.gene056387:CDS 40.0%
! CTGGATTAGATGGTTCAACT+TGG - chr4.1:33990437-33990456 None:intergenic 40.0%
!! GATTCTCTAAAGCCATTGCA+CGG - chr4.1:33990117-33990136 None:intergenic 40.0%
!! TAAGGGTTAGTCTAGTGGTA+TGG - chr4.1:33989930-33989949 None:intergenic 40.0%
!! TTGGGCTGTTGATGATTTCT+TGG + chr4.1:33990518-33990537 MS.gene056387:CDS 40.0%
AAAGCCATTGCACGGTGTAA+CGG - chr4.1:33990109-33990128 None:intergenic 45.0%
AACTAGAAGCCAAAGCCACA+CGG - chr4.1:33990392-33990411 None:intergenic 45.0%
AATGACCAGTTTCCTCAGGA+AGG + chr4.1:33991191-33991210 MS.gene056387:CDS 45.0%
AGTCCTTACAGAACAGTGCT+CGG - chr4.1:33990302-33990321 None:intergenic 45.0%
ATCGAACATGTGACCTTGAG+AGG - chr4.1:33990816-33990835 None:intergenic 45.0%
ATGTCCTATTCGTGCCCTAA+GGG - chr4.1:33989947-33989966 None:intergenic 45.0%
CAACTTCCAGTAATGCATGC+TGG + chr4.1:33991236-33991255 MS.gene056387:CDS 45.0%
CAGAAGCAATCCATGGAGTT+TGG + chr4.1:33991134-33991153 MS.gene056387:intron 45.0%
CAGGAATCGAACCCTTTCTT+CGG + chr4.1:33989895-33989914 MS.gene056387:intron 45.0%
CATGTAGCTGGTAGTCTTTC+TGG + chr4.1:33990336-33990355 MS.gene056387:CDS 45.0%
CTAAACCTTCCTGAGGAAAC+TGG - chr4.1:33991199-33991218 None:intergenic 45.0%
CTGAGGAGGAGAAACTTTGA+CGG - chr4.1:33990475-33990494 None:intergenic 45.0%
GAAATCATCAACAGCCCAAG+AGG - chr4.1:33990517-33990536 None:intergenic 45.0%
GCATGCATTACTGGAAGTTG+CGG - chr4.1:33991236-33991255 None:intergenic 45.0%
GCCAAACTAACCCACCAAAA+TGG - chr4.1:33990851-33990870 None:intergenic 45.0%
GTGTGAAAAAGCTCCTGCTA+CGG + chr4.1:33989207-33989226 MS.gene056387:CDS 45.0%
TAACCCACCAAAATGGGTAC+CGG - chr4.1:33990844-33990863 None:intergenic 45.0%
TACACACTAACTCTGCCGTT+TGG + chr4.1:33990937-33990956 MS.gene056387:intron 45.0%
TCATGTCGGACTTCAATCCT+AGG - chr4.1:33991311-33991330 None:intergenic 45.0%
TGAAGGAAACCAACTTGGGT+TGG + chr4.1:33990755-33990774 MS.gene056387:intron 45.0%
TGAGGAGGAGAAACTTTGAC+GGG - chr4.1:33990474-33990493 None:intergenic 45.0%
TGGAGAGCTTGAATGGCTAT+CGG + chr4.1:33991154-33991173 MS.gene056387:CDS 45.0%
TGGAGTTTGGAGAGCTTGAA+TGG + chr4.1:33991147-33991166 MS.gene056387:CDS 45.0%
TTCAAGCTCTCCAAACTCCA+TGG - chr4.1:33991147-33991166 None:intergenic 45.0%
! CGATGATGATGAGCACTTCA+TGG + chr4.1:33991334-33991353 MS.gene056387:CDS 45.0%
! TGTTGCGTGTCTGGATTAGA+TGG - chr4.1:33990447-33990466 None:intergenic 45.0%
!! AGCTTGCTAGCAAGCATCAA+AGG + chr4.1:33989296-33989315 MS.gene056387:CDS 45.0%
!! GGGTTAGTTTGGCTCTATGA+AGG + chr4.1:33990858-33990877 MS.gene056387:intron 45.0%
!! TGGCTTTGATTCACCAGACA+AGG + chr4.1:33990548-33990567 MS.gene056387:CDS 45.0%
!!! CCCATTTTGGTGGGTTAGTT+TGG + chr4.1:33990847-33990866 MS.gene056387:intron 45.0%
AACCCACCAAAATGGGTACC+GGG - chr4.1:33990843-33990862 None:intergenic 50.0%
AAGCCATTGCACGGTGTAAC+GGG - chr4.1:33990108-33990127 None:intergenic 50.0%
ACACTGCCAGCATGCATTAC+TGG - chr4.1:33991245-33991264 None:intergenic 50.0%
ACCACAAAGCCAACCCAAGT+TGG - chr4.1:33990767-33990786 None:intergenic 50.0%
CATGTCCTATTCGTGCCCTA+AGG - chr4.1:33989948-33989967 None:intergenic 50.0%
CTAACCCTTAGGGCACGAAT+AGG + chr4.1:33989940-33989959 MS.gene056387:intron 50.0%
CTTGAATGGCTATCGGATGC+AGG + chr4.1:33991161-33991180 MS.gene056387:CDS 50.0%
GCACAACAAATCACCGTAGC+AGG - chr4.1:33989223-33989242 None:intergenic 50.0%
GCCTAGTTTCGCATCCTCTT+GGG + chr4.1:33990500-33990519 MS.gene056387:CDS 50.0%
GGACTGAGACACCGAAGAAA+GGG - chr4.1:33989909-33989928 None:intergenic 50.0%
GTCACATGTTCGATTCTCCC+CGG + chr4.1:33990822-33990841 MS.gene056387:intron 50.0%
TGCCTAGTTTCGCATCCTCT+TGG + chr4.1:33990499-33990518 MS.gene056387:CDS 50.0%
TGGACTGAGACACCGAAGAA+AGG - chr4.1:33989910-33989929 None:intergenic 50.0%
! AAACTAGGCACTTGCTGAGG+AGG - chr4.1:33990489-33990508 None:intergenic 50.0%
! AGACCGAGCACTGTTCTGTA+AGG + chr4.1:33990296-33990315 MS.gene056387:CDS 50.0%
! ATTCTCCCCGGTACCCATTT+TGG + chr4.1:33990834-33990853 MS.gene056387:intron 50.0%
! CACTTCATGGTGCCAGATCT+CGG + chr4.1:33991347-33991366 MS.gene056387:CDS 50.0%
!! ACCAACTTGGGTTGGCTTTG+TGG + chr4.1:33990763-33990782 MS.gene056387:intron 50.0%
!! TGCCCTAAGGGTTAGTCTAG+TGG - chr4.1:33989935-33989954 None:intergenic 50.0%
!! TGGCTTTGTGGTGTTGGCTT+GGG + chr4.1:33990775-33990794 MS.gene056387:intron 50.0%
!! TTGGCTTTGTGGTGTTGGCT+TGG + chr4.1:33990774-33990793 MS.gene056387:intron 50.0%
!! TTGGGTTGGCTTTGTGGTGT+TGG + chr4.1:33990769-33990788 MS.gene056387:intron 50.0%
AGCCAAAGCCACACGGATAC+CGG - chr4.1:33990385-33990404 None:intergenic 55.0%
CAACCCGTTACACCGTGCAA+TGG + chr4.1:33990102-33990121 MS.gene056387:intron 55.0%
CTTCGAGTGTGCTCCTCTCA+AGG + chr4.1:33990800-33990819 MS.gene056387:intron 55.0%
GCCCAAGAGGATGCGAAACT+AGG - chr4.1:33990504-33990523 None:intergenic 55.0%
GCTGCAGCTAAACCTTCCTG+AGG - chr4.1:33991206-33991225 None:intergenic 55.0%
TACCGGTATCCGTGTGGCTT+TGG + chr4.1:33990380-33990399 MS.gene056387:CDS 55.0%
! ACCCACCAAAATGGGTACCG+GGG - chr4.1:33990842-33990861 None:intergenic 55.0%
! CTTGAGAGGAGCACACTCGA+AGG - chr4.1:33990802-33990821 None:intergenic 55.0%
! GCGAAACTAGGCACTTGCTG+AGG - chr4.1:33990492-33990511 None:intergenic 55.0%
!! ACGGGAACTTGTTGCGTGTC+TGG - chr4.1:33990456-33990475 None:intergenic 55.0%
!! TCCCCGGTACCCATTTTGGT+GGG + chr4.1:33990838-33990857 MS.gene056387:intron 55.0%
!! TTGCACGGTGTAACGGGTTG+TGG - chr4.1:33990102-33990121 None:intergenic 55.0%
CACCAGCGCTTCCTTGCTAC+CGG + chr4.1:33990363-33990382 MS.gene056387:CDS 60.0%
CCACACGGATACCGGTAGCA+AGG - chr4.1:33990377-33990396 None:intergenic 60.0%
CCTTGCTACCGGTATCCGTG+TGG + chr4.1:33990374-33990393 MS.gene056387:CDS 60.0%
! CTCCCCGGTACCCATTTTGG+TGG + chr4.1:33990837-33990856 MS.gene056387:intron 60.0%
! TACCGGTAGCAAGGAAGCGC+TGG - chr4.1:33990368-33990387 None:intergenic 60.0%
!! CGGTAGCAAGGAAGCGCTGG+TGG - chr4.1:33990365-33990384 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 33989187 33991373 33989187 ID=MS.gene056387
chr4.1 mRNA 33989187 33991373 33989187 ID=MS.gene056387.t1;Parent=MS.gene056387
chr4.1 exon 33989187 33989369 33989187 ID=MS.gene056387.t1.exon1;Parent=MS.gene056387.t1
chr4.1 CDS 33989187 33989369 33989187 ID=cds.MS.gene056387.t1;Parent=MS.gene056387.t1
chr4.1 exon 33990267 33990569 33990267 ID=MS.gene056387.t1.exon2;Parent=MS.gene056387.t1
chr4.1 CDS 33990267 33990569 33990267 ID=cds.MS.gene056387.t1;Parent=MS.gene056387.t1
chr4.1 exon 33991137 33991373 33991137 ID=MS.gene056387.t1.exon3;Parent=MS.gene056387.t1
chr4.1 CDS 33991137 33991373 33991137 ID=cds.MS.gene056387.t1;Parent=MS.gene056387.t1
Gene Sequence

>MS.gene056387

ATGAAAATACAGTGTGATGTGTGTGAAAAAGCTCCTGCTACGGTGATTTGTTGTGCTGATGAAGCTGCTTTGTGTGCTAAATGTGATGTTGAAGTTCATGCTGCTAATAAGCTTGCTAGCAAGCATCAAAGGCTTCTTCTTCAATGTCTTTCTAACAAGCTTCCTAAATGTGATATCTGCCAAGTATGGTTTTGTTTTTGCTTTTTGTTTTTTTTTTTATCATTTTTAGTCTATCAATTATAGAAGTTTAGCAAATATGATTTTACTCTGAATTTCTATTTTATTTAAAACCTTTAAAGTCTTTTTTTTAATTAAAATAATATTTTTGGAGCTTCATGATGAATTTATTTAATAATATATTGAATTTTGTAGGATTTAAGATTAGGGTTTTAAGAATGTTTTCTAAAAATGAATATATTTAATTTGTAAATTGTTTTAATAAATTATTATGAGAGTTTGGAATAAAGATTTTATTTGTACATATACATCCCATGTTATTTTTTTTTGCACATGCATCTGTCTTCACATCTGACCATGTAGATTCATGAAGATTTTTGTGAAGATATTTAAGCAACTAACATGATAAAATAATGATATCATGCTATAATTGTCTTTGATTGGATTGGATATGCATGTGTATAAATGTTTTTCATCATCCATAGATAGAAATCAATGTCTTGGAATAAATGGATGATGTTGTGTTTGTAGCAGGAATCGAACCCTTTCTTCGGTGTCTCAGTCCATACCACTAGACTAACCCTTAGGGCACGAATAGGACATGCCTAAAGAATCGATCAAAAGTGTAATTAAACCCTATTTATTTTGAATAAGAAGCATCTAGGTAATCTAAATATCAAACCCAGTACATCAGATTTAGCATTTAAAGAATTTATCTCTTTAAATCAAACAGCTCCACAACCCGTTACACCGTGCAATGGCTTTAGAGAATCCCGATCCGAATATTGCAATTTTCACCGGAATTTTGAATTGTGTTTCGAACTGGATTAGTTTATTTGATGTTGAAGTATTTGCTGAACATGGATGATTTTACTGACTTTGGCCTTCATCTTATAACTATAGGATAAGCCAGCTTTCATATTTTGTGTTGAAGACCGAGCACTGTTCTGTAAGGACTGTGATGAACCAATTCATGTAGCTGGTAGTCTTTCTGGAAACCACCAGCGCTTCCTTGCTACCGGTATCCGTGTGGCTTTGGCTTCTAGTTGCACCAAAGACAATGAGAAAAGCCAAGTTGAACCATCTAATCCAGACACGCAACAAGTTCCCGTCAAAGTTTCTCCTCCTCAGCAAGTGCCTAGTTTCGCATCCTCTTGGGCTGTTGATGATTTCTTGGAATTAACTGGCTTTGATTCACCAGACAAGGTAAGACAACTTTATTTCATGATATTGTAGTTGCAATTATATGCTCTAAGAAATTCGTTGATTACTGATTGAGAGATTATGATTTATGATGGAGGGAATGACAGCTATAAAGTTTACTTCAATGATTCAGTATAAATGTTTGCATTGTACACAATCAAGAATTTTTTTTGTTGATAAATGATCTGTGAAGGAAACCAACTTGGGTTGGCTTTGTGGTGTTGGCTTGGGACCTTCGAGTGTGCTCCTCTCAAGGTCACATGTTCGATTCTCCCCGGTACCCATTTTGGTGGGTTAGTTTGGCTCTATGAAGGAAGAAACCAGTTCGTTTAATGAAATAATGAGCAAGAGTAGCTTAACTTCTCTACAGTACACACTAACTCTGCCGTTTGGTTTCTGTTTATATGAATTTTTGAGGTCTTGAATTAATACTTCGAACCATATTTGCACAGGCAATGGTAAGGAGATTTTTGTTTTTGCCTTTATGATTATGTTAATAGTAACATAATTTTGATGAGCCTCCTTTATATTGTTTTAATATTTGGAACTTTTTCCTTTCTTTCTTTTCAGAAGCAATCCATGGAGTTTGGAGAGCTTGAATGGCTATCGGATGCAGGTCTTTTCAATGACCAGTTTCCTCAGGAAGGTTTAGCTGCAGCTGAAGTTCCGCAACTTCCAGTAATGCATGCTGGCAGTGTTTATCCTTACAAAGCCTCTAAATCTTATATGTCTTACAAAAAGCCTAGGATTGAAGTCCGACATGAAGACGATGATGATGAGCACTTCATGGTGCCAGATCTCGGCTAA

Protein sequence

>MS.gene056387.t1

MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPKCDICQDKPAFIFCVEDRALFCKDCDEPIHVAGSLSGNHQRFLATGIRVALASSCTKDNEKSQVEPSNPDTQQVPVKVSPPQQVPSFASSWAVDDFLELTGFDSPDKKQSMEFGELEWLSDAGLFNDQFPQEGLAAAEVPQLPVMHAGSVYPYKASKSYMSYKKPRIEVRHEDDDDEHFMVPDLG