Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21618.t1 | XP_013453403.1 | 87.1 | 643 | 60 | 3 | 1 | 642 | 1 | 621 | 8.70E-304 | 1052.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21618.t1 | A0A072UCU8 | 87.1 | 643 | 60 | 3 | 1 | 642 | 1 | 621 | 6.3e-304 | 1052.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene21618 | 0.814799 | 1.28E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene21618 | 0.828144 | 1.06E-54 | -1.69E-46 |
| MS.gene051719 | MS.gene21618 | 0.804348 | 2.26E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene21618 | 0.800622 | 1.32E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21618.t1 | MTR_5g010160 | 87.092 | 643 | 60 | 3 | 1 | 642 | 1 | 621 | 0.0 | 1040 |
| MS.gene21618.t1 | MTR_8g098260 | 50.067 | 747 | 250 | 19 | 1 | 642 | 573 | 1301 | 0.0 | 568 |
| MS.gene21618.t1 | MTR_4g064997 | 29.863 | 365 | 205 | 15 | 292 | 642 | 549 | 876 | 1.26e-26 | 116 |
| MS.gene21618.t1 | MTR_2g097850 | 31.023 | 303 | 163 | 10 | 292 | 581 | 608 | 877 | 1.60e-25 | 112 |
| MS.gene21618.t1 | MTR_4g019900 | 26.359 | 368 | 228 | 11 | 215 | 572 | 542 | 876 | 2.11e-25 | 112 |
| MS.gene21618.t1 | MTR_7g065880 | 28.956 | 297 | 170 | 11 | 292 | 572 | 530 | 801 | 2.81e-25 | 112 |
| MS.gene21618.t1 | MTR_1g073360 | 28.070 | 342 | 178 | 9 | 289 | 573 | 229 | 559 | 3.44e-25 | 110 |
| MS.gene21618.t1 | MTR_1g073360 | 28.070 | 342 | 178 | 9 | 289 | 573 | 264 | 594 | 4.99e-25 | 110 |
| MS.gene21618.t1 | MTR_7g065880 | 27.843 | 255 | 144 | 10 | 292 | 530 | 530 | 760 | 8.17e-16 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21618.t1 | AT4G11450 | 34.747 | 731 | 325 | 22 | 16 | 642 | 12 | 694 | 9.50e-94 | 304 |
| MS.gene21618.t1 | AT1G63520 | 33.077 | 390 | 190 | 12 | 284 | 642 | 179 | 528 | 1.53e-50 | 184 |
| MS.gene21618.t1 | AT5G59020 | 29.539 | 369 | 196 | 14 | 292 | 642 | 458 | 780 | 6.38e-27 | 117 |
| MS.gene21618.t1 | AT2G29510 | 28.649 | 370 | 190 | 16 | 292 | 642 | 525 | 839 | 2.29e-23 | 105 |
| MS.gene21618.t1 | AT1G04490 | 34.975 | 203 | 89 | 8 | 391 | 573 | 210 | 389 | 5.05e-23 | 102 |
| MS.gene21618.t1 | AT1G04490 | 34.975 | 203 | 89 | 8 | 391 | 573 | 210 | 389 | 5.05e-23 | 102 |
| MS.gene21618.t1 | AT1G04490 | 34.975 | 203 | 89 | 8 | 391 | 573 | 210 | 389 | 5.05e-23 | 102 |
| MS.gene21618.t1 | AT1G04490 | 34.975 | 203 | 89 | 8 | 391 | 573 | 210 | 389 | 5.05e-23 | 102 |
| MS.gene21618.t1 | AT1G04490 | 34.975 | 203 | 89 | 8 | 391 | 573 | 210 | 389 | 5.05e-23 | 102 |
| MS.gene21618.t1 | AT1G04490 | 34.975 | 203 | 89 | 8 | 391 | 573 | 210 | 389 | 5.05e-23 | 102 |
| MS.gene21618.t1 | AT1G04490 | 34.975 | 203 | 89 | 8 | 391 | 573 | 210 | 389 | 5.05e-23 | 102 |
| MS.gene21618.t1 | AT1G04490 | 34.975 | 203 | 89 | 8 | 391 | 573 | 210 | 389 | 5.05e-23 | 102 |
| MS.gene21618.t1 | AT2G33360 | 37.356 | 174 | 87 | 6 | 416 | 576 | 270 | 434 | 5.23e-21 | 96.7 |
| MS.gene21618.t1 | AT2G33360 | 37.356 | 174 | 87 | 6 | 416 | 576 | 425 | 589 | 9.80e-21 | 97.1 |
| MS.gene21618.t1 | AT5G01030 | 39.655 | 116 | 61 | 2 | 457 | 572 | 612 | 718 | 1.40e-20 | 97.1 |
| MS.gene21618.t1 | AT5G01030 | 39.655 | 116 | 61 | 2 | 457 | 572 | 612 | 718 | 1.40e-20 | 97.1 |
| MS.gene21618.t1 | AT5G01030 | 39.655 | 116 | 61 | 2 | 457 | 572 | 612 | 718 | 1.40e-20 | 97.1 |
| MS.gene21618.t1 | AT2G37930 | 31.967 | 122 | 72 | 2 | 450 | 571 | 418 | 528 | 2.83e-14 | 76.6 |
| MS.gene21618.t1 | AT2G37930 | 31.967 | 122 | 72 | 2 | 450 | 571 | 418 | 528 | 2.83e-14 | 76.6 |
| MS.gene21618.t1 | AT2G37930 | 31.967 | 122 | 72 | 2 | 450 | 571 | 390 | 500 | 2.99e-14 | 76.3 |
| MS.gene21618.t1 | AT1G04490 | 34.058 | 138 | 61 | 6 | 391 | 508 | 210 | 337 | 3.48e-13 | 72.0 |
Find 104 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATGATTCTCTTGTAAT+TGG | 0.204795 | 5.2:-3534504 | MS.gene21618:CDS |
| CTGATTTGAACTATGATAAA+TGG | 0.218217 | 5.2:+3534851 | None:intergenic |
| GAGTAGGTAATGCTTTAAAT+TGG | 0.219018 | 5.2:-3534107 | MS.gene21618:CDS |
| TGAGATGGAAGAACAGAATT+TGG | 0.235493 | 5.2:+3535017 | None:intergenic |
| GCATTAGAAGATGGAGTAAT+TGG | 0.242621 | 5.2:-3533961 | MS.gene21618:CDS |
| ATTTATCAATAGAGAAATTA+AGG | 0.247277 | 5.2:-3534256 | MS.gene21618:CDS |
| TTCAAAGATTAGAAGTAATA+AGG | 0.259001 | 5.2:-3534526 | MS.gene21618:CDS |
| TTTACCTTAAACTCAAAATA+AGG | 0.270888 | 5.2:+3534165 | None:intergenic |
| GAGGTTGCGACTGTGGTGGC+TGG | 0.277543 | 5.2:-3533600 | MS.gene21618:CDS |
| TTCTTGTTCCTGTGCTTGTA+TGG | 0.323518 | 5.2:-3534643 | MS.gene21618:CDS |
| ACTCGCCCAATAGGAGAAAA+AGG | 0.325250 | 5.2:+3532515 | None:intergenic |
| ATTGAATTGTGCATAAATTC+AGG | 0.325515 | 5.2:-3534597 | MS.gene21618:CDS |
| TCTTGTTTATGAGATCTAAA+TGG | 0.326115 | 5.2:+3534900 | None:intergenic |
| CAATCACTTTCTGATGGATA+TGG | 0.355890 | 5.2:+3534435 | None:intergenic |
| AAAGGTAGGAGTACTTTCTT+TGG | 0.371277 | 5.2:+3532817 | None:intergenic |
| ACTAGTGACAACTCTTATTC+TGG | 0.379125 | 5.2:-3534777 | MS.gene21618:CDS |
| TTTGCAACAAAGGCATGTTC+AGG | 0.382252 | 5.2:+3534138 | None:intergenic |
| TAGTTCAAATCAGAAGAAAA+TGG | 0.383604 | 5.2:-3534841 | MS.gene21618:CDS |
| TGGAGTAATTGGAAACTATA+TGG | 0.389111 | 5.2:-3533950 | MS.gene21618:CDS |
| CATTCACTCCAATCAGAAAA+AGG | 0.389269 | 5.2:-3534386 | MS.gene21618:CDS |
| GGCAGAGGTGCCATGCAAAA+TGG | 0.391529 | 5.2:+3532709 | None:intergenic |
| TGAAGAGATAGCACTTGGTT+TGG | 0.397726 | 5.2:+3533726 | None:intergenic |
| ACGGAGAAAGCATGTAGAAA+TGG | 0.400955 | 5.2:-3534972 | MS.gene21618:CDS |
| TGGATATGGTTGGTGAGAAT+TGG | 0.401771 | 5.2:+3534449 | None:intergenic |
| AGTAGGTAATGCTTTAAATT+GGG | 0.403955 | 5.2:-3534106 | MS.gene21618:CDS |
| TCTAGTATAGTAGAAGTAAC+AGG | 0.420129 | 5.2:-3534558 | MS.gene21618:CDS |
| CTTCTTCCTTTCATGAATTG+TGG | 0.423987 | 5.2:+3534818 | None:intergenic |
| ACACTTCATACTCGCCCAAT+AGG | 0.429631 | 5.2:+3532506 | None:intergenic |
| AAACAATAGCAGCACTTTCA+AGG | 0.433528 | 5.2:+3533821 | None:intergenic |
| AACGAAGAATAATGCAGGCT+TGG | 0.436122 | 5.2:-3534055 | MS.gene21618:CDS |
| CGACTGTGGTGGCTGGGACA+TGG | 0.444536 | 5.2:-3533593 | MS.gene21618:CDS |
| AAAGAAAGTACTCCTACCTT+TGG | 0.451706 | 5.2:-3532815 | MS.gene21618:CDS |
| ATTATTGATGGGACAAGAGT+TGG | 0.452032 | 5.2:-3535072 | None:intergenic |
| ATGCAAAATGGCGACACAAA+TGG | 0.455919 | 5.2:+3532721 | None:intergenic |
| CGGAGAAAGCATGTAGAAAT+GGG | 0.462392 | 5.2:-3534971 | MS.gene21618:CDS |
| GGATTGCCTAAAATAATAAG+AGG | 0.466780 | 5.2:+3533565 | None:intergenic |
| TTATGTTCTGCATTAGAAGA+TGG | 0.466903 | 5.2:-3533970 | MS.gene21618:CDS |
| AGATTACCATGCAAATGAAC+AGG | 0.469037 | 5.2:+3534213 | None:intergenic |
| GTGAAGGTGGTATTACCAAT+TGG | 0.472172 | 5.2:-3533691 | MS.gene21618:CDS |
| GGCAAACCATGGTTTCCAAT+TGG | 0.474993 | 5.2:+3533676 | None:intergenic |
| ACGAAGAATAATGCAGGCTT+GGG | 0.479565 | 5.2:-3534054 | MS.gene21618:CDS |
| ACCTTCTTCAGTAATATCTC+AGG | 0.485628 | 5.2:-3534697 | MS.gene21618:CDS |
| TGCCTTAGCGCTAAAGGCAG+AGG | 0.487054 | 5.2:+3532694 | None:intergenic |
| TGCTCACCTGTTCATTTGCA+TGG | 0.492446 | 5.2:-3534219 | MS.gene21618:CDS |
| GTCTTCTGCCTTAGCGCTAA+AGG | 0.492533 | 5.2:+3532688 | None:intergenic |
| TCCTGAGATATTACTGAAGA+AGG | 0.493642 | 5.2:+3534696 | None:intergenic |
| TTTAGATCTCATAAACAAGA+AGG | 0.497996 | 5.2:-3534897 | MS.gene21618:CDS |
| AAGCTTTCTCTCTTATGAAA+CGG | 0.499315 | 5.2:+3533790 | None:intergenic |
| CACCTCTGCCTTTAGCGCTA+AGG | 0.500290 | 5.2:-3532696 | MS.gene21618:CDS |
| TGACAAAGATTCATCATCAA+TGG | 0.501640 | 5.2:-3534019 | MS.gene21618:CDS |
| ATGCCTTTGTTGCAAAGACA+TGG | 0.516018 | 5.2:-3534131 | MS.gene21618:CDS |
| AGGTTGCGACTGTGGTGGCT+GGG | 0.520329 | 5.2:-3533599 | MS.gene21618:CDS |
| GCCTAAAATAATAAGAGGGC+AGG | 0.521166 | 5.2:+3533570 | None:intergenic |
| TTGCAACAAAGGCATGTTCA+GGG | 0.525799 | 5.2:+3534139 | None:intergenic |
| GATGAACAATCACTTTCTGA+TGG | 0.526712 | 5.2:+3534429 | None:intergenic |
| TCTTCATGAAATTGAACACT+AGG | 0.527191 | 5.2:+3533544 | None:intergenic |
| TCCAACACAACAAAAGATGC+TGG | 0.528715 | 5.2:-3534291 | MS.gene21618:CDS |
| TCATGAAGATCGCCCTCTTG+TGG | 0.528877 | 5.2:-3533530 | MS.gene21618:CDS |
| GGGAATATAGAAAACAGAAA+AGG | 0.528911 | 5.2:-3534876 | MS.gene21618:CDS |
| CTTCATCGTTACTTGATCGA+TGG | 0.538533 | 5.2:-3533633 | MS.gene21618:CDS |
| CGTGGTGGAGGTTGCGACTG+TGG | 0.546249 | 5.2:-3533607 | MS.gene21618:CDS |
| GGCATGACATTAGTTGAAGA+GGG | 0.547501 | 5.2:-3532794 | MS.gene21618:CDS |
| AAAAGGCGGGTTCAGCATAG+AGG | 0.548013 | 5.2:+3532532 | None:intergenic |
| GAAAGCTTGAAATACAAAAG+AGG | 0.552857 | 5.2:-3533775 | MS.gene21618:CDS |
| TGGCATGACATTAGTTGAAG+AGG | 0.559062 | 5.2:-3532795 | MS.gene21618:CDS |
| GTATTACCAATTGGAAACCA+TGG | 0.570636 | 5.2:-3533682 | MS.gene21618:CDS |
| ACTAGAACGAAGAATAATGC+AGG | 0.576845 | 5.2:-3534060 | MS.gene21618:CDS |
| TGTGGAGAAATATCAACCAC+TGG | 0.578630 | 5.2:-3533512 | MS.gene21618:CDS |
| GGTTGATATTTCTCCACAAG+AGG | 0.580921 | 5.2:+3533517 | None:intergenic |
| AGAAGATAGAAATTTCAAGT+AGG | 0.583123 | 5.2:-3534800 | MS.gene21618:CDS |
| GCACAGGAACAAGAAACAGA+TGG | 0.584959 | 5.2:+3534651 | None:intergenic |
| AAATGGCCACAATTCATGAA+AGG | 0.585694 | 5.2:-3534824 | MS.gene21618:CDS |
| ACTAGTGAAGAGATAGCACT+TGG | 0.589663 | 5.2:+3533721 | None:intergenic |
| TTAGATCTCATAAACAAGAA+GGG | 0.592600 | 5.2:-3534896 | MS.gene21618:CDS |
| GCTGTGTTCCATACAAGCAC+AGG | 0.592937 | 5.2:+3534635 | None:intergenic |
| TTCAACTAATGTCATGCCAA+AGG | 0.596988 | 5.2:+3532799 | None:intergenic |
| TTGTGTGGTTCAGATGATGA+AGG | 0.597591 | 5.2:-3534738 | MS.gene21618:CDS |
| CACTTTCTGATGGATATGGT+TGG | 0.600468 | 5.2:+3534439 | None:intergenic |
| GTTGCAAAGACATGGAGAGT+AGG | 0.601872 | 5.2:-3534123 | MS.gene21618:CDS |
| AAAGGCGGGTTCAGCATAGA+GGG | 0.602098 | 5.2:+3532533 | None:intergenic |
| ACTAATGTCATGCCAAAGGT+AGG | 0.602147 | 5.2:+3532803 | None:intergenic |
| CATCGATCAAGTAACGATGA+AGG | 0.603033 | 5.2:+3533634 | None:intergenic |
| AGATGATGAAGGTTCTGTTG+AGG | 0.604425 | 5.2:-3534727 | MS.gene21618:CDS |
| TCTCCATGTCTTTGCAACAA+AGG | 0.610158 | 5.2:+3534128 | None:intergenic |
| TGCAACAAAGGCATGTTCAG+GGG | 0.610690 | 5.2:+3534140 | None:intergenic |
| AAACTGTTCGAATGTGAAGA+CGG | 0.616043 | 5.2:-3534991 | MS.gene21618:CDS |
| GTTTATGAGATCTAAATGGA+AGG | 0.617161 | 5.2:+3534904 | None:intergenic |
| ACTAGTAGAGCAAGTGAAGG+TGG | 0.627677 | 5.2:-3533704 | MS.gene21618:CDS |
| GATCGATGGAAACGTGGTGG+AGG | 0.630037 | 5.2:-3533619 | MS.gene21618:CDS |
| TTTCAGCACTCGGCAAACCA+TGG | 0.634745 | 5.2:+3533665 | None:intergenic |
| GTTGATATTTCTCCACAAGA+GGG | 0.637606 | 5.2:+3533518 | None:intergenic |
| GGACCCTCACTTTCAGCACT+CGG | 0.637991 | 5.2:+3533655 | None:intergenic |
| GATTGCCTAAAATAATAAGA+GGG | 0.639856 | 5.2:+3533566 | None:intergenic |
| GGCTGAGAGAAAAGTTCCAG+TGG | 0.651763 | 5.2:+3533496 | None:intergenic |
| GACAGTGTCTAATATTCACA+AGG | 0.661260 | 5.2:-3532567 | MS.gene21618:CDS |
| TAGAAATGGGAAATTCAAAG+AGG | 0.661488 | 5.2:-3534958 | MS.gene21618:CDS |
| TTCACTAGTAGAGCAAGTGA+AGG | 0.664123 | 5.2:-3533707 | MS.gene21618:CDS |
| TTACTTGATCGATGGAAACG+TGG | 0.669031 | 5.2:-3533625 | MS.gene21618:CDS |
| TTTGCCGAGTGCTGAAAGTG+AGG | 0.673811 | 5.2:-3533659 | MS.gene21618:CDS |
| TTGCCGAGTGCTGAAAGTGA+GGG | 0.675336 | 5.2:-3533658 | MS.gene21618:CDS |
| CTTGATCGATGGAAACGTGG+TGG | 0.678438 | 5.2:-3533622 | MS.gene21618:CDS |
| GGTGGAGGTTGCGACTGTGG+TGG | 0.686683 | 5.2:-3533604 | MS.gene21618:CDS |
| CATCAAATCAGTCATAACAG+AGG | 0.691271 | 5.2:-3532597 | MS.gene21618:CDS |
| ACAGTGTCTAATATTCACAA+GGG | 0.757092 | 5.2:-3532566 | MS.gene21618:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTTTATAAAATTGATT+TGG | - | chr5.2:3534190-3534209 | MS.gene21618:CDS | 10.0% |
| !! | ATTTATCAATAGAGAAATTA+AGG | - | chr5.2:3533320-3533339 | MS.gene21618:intron | 15.0% |
| !!! | ACTTACATTTTATCTATTTT+TGG | - | chr5.2:3534725-3534744 | MS.gene21618:CDS | 15.0% |
| !! | AGATAAAATGCATATACAAT+TGG | - | chr5.2:3534533-3534552 | MS.gene21618:CDS | 20.0% |
| !! | ATCTTATATAGTATGTACAT+TGG | + | chr5.2:3534603-3534622 | None:intergenic | 20.0% |
| !! | GATAAAAAGCAAAAAGATAT+TGG | - | chr5.2:3534555-3534574 | MS.gene21618:CDS | 20.0% |
| !! | TTCAAAGATTAGAAGTAATA+AGG | - | chr5.2:3533050-3533069 | MS.gene21618:intron | 20.0% |
| !! | TTTACCTTAAACTCAAAATA+AGG | + | chr5.2:3533414-3533433 | None:intergenic | 20.0% |
| !!! | AATATTTTGAATGCGTTTTT+GGG | - | chr5.2:3534135-3534154 | MS.gene21618:CDS | 20.0% |
| !!! | TAATATTTTGAATGCGTTTT+TGG | - | chr5.2:3534134-3534153 | MS.gene21618:CDS | 20.0% |
| ! | AAAAAAAGTTGCAAGAAACA+TGG | - | chr5.2:3533233-3533252 | MS.gene21618:intron | 25.0% |
| ! | ACAAGAAAAAACAATCAAAG+AGG | + | chr5.2:3534705-3534724 | None:intergenic | 25.0% |
| ! | ATTGAATTGTGCATAAATTC+AGG | - | chr5.2:3532979-3532998 | MS.gene21618:intron | 25.0% |
| ! | GAACATTCTTTAAATTAGCT+TGG | - | chr5.2:3534466-3534485 | MS.gene21618:CDS | 25.0% |
| ! | GATTGCCTAAAATAATAAGA+GGG | + | chr5.2:3534013-3534032 | None:intergenic | 25.0% |
| ! | GTTAATGATTCTCTTGTAAT+TGG | - | chr5.2:3533072-3533091 | MS.gene21618:intron | 25.0% |
| ! | TAATTCTCCTCTTAAAAAAG+TGG | - | chr5.2:3533098-3533117 | MS.gene21618:intron | 25.0% |
| ! | TAGTTCAAATCAGAAGAAAA+TGG | - | chr5.2:3532735-3532754 | MS.gene21618:CDS | 25.0% |
| ! | TTAGATCTCATAAACAAGAA+GGG | - | chr5.2:3532680-3532699 | MS.gene21618:CDS | 25.0% |
| ! | TTGGTTAAGCTTAAATAAAC+AGG | - | chr5.2:3534336-3534355 | MS.gene21618:CDS | 25.0% |
| ! | TTTAGATCTCATAAACAAGA+AGG | - | chr5.2:3532679-3532698 | MS.gene21618:CDS | 25.0% |
| !! | AGAAGATAGAAATTTCAAGT+AGG | - | chr5.2:3532776-3532795 | MS.gene21618:CDS | 25.0% |
| !! | AGTAGGTAATGCTTTAAATT+GGG | - | chr5.2:3533470-3533489 | MS.gene21618:intron | 25.0% |
| !! | CTGATTTGAACTATGATAAA+TGG | + | chr5.2:3532728-3532747 | None:intergenic | 25.0% |
| !! | GTAATGAAGATAATTTTGCA+TGG | + | chr5.2:3534826-3534845 | None:intergenic | 25.0% |
| !! | GTGTTTTATAGACAATTGAT+CGG | - | chr5.2:3534412-3534431 | MS.gene21618:CDS | 25.0% |
| !! | TCTTGTTTATGAGATCTAAA+TGG | + | chr5.2:3532679-3532698 | None:intergenic | 25.0% |
| !!! | ACATCCTTATTTTGAGTTTA+AGG | - | chr5.2:3533407-3533426 | MS.gene21618:intron | 25.0% |
| !!! | ACTTTTTTTGACTTTGTGAA+AGG | + | chr5.2:3533222-3533241 | None:intergenic | 25.0% |
| !!! | TACAACAATGTGTTTTTGAT+TGG | - | chr5.2:3534630-3534649 | MS.gene21618:CDS | 25.0% |
| AAGCTTTCTCTCTTATGAAA+CGG | + | chr5.2:3533789-3533808 | None:intergenic | 30.0% | |
| ACAGTGTCTAATATTCACAA+GGG | - | chr5.2:3535010-3535029 | MS.gene21618:CDS | 30.0% | |
| ACTTGTCTTTAGCTAGTATT+TGG | - | chr5.2:3534505-3534524 | MS.gene21618:CDS | 30.0% | |
| GAAAGCTTGAAATACAAAAG+AGG | - | chr5.2:3533801-3533820 | MS.gene21618:CDS | 30.0% | |
| GGATTGCCTAAAATAATAAG+AGG | + | chr5.2:3534014-3534033 | None:intergenic | 30.0% | |
| GGGAATATAGAAAACAGAAA+AGG | - | chr5.2:3532700-3532719 | MS.gene21618:CDS | 30.0% | |
| GTTTATGAGATCTAAATGGA+AGG | + | chr5.2:3532675-3532694 | None:intergenic | 30.0% | |
| TAGAAATGGGAAATTCAAAG+AGG | - | chr5.2:3532618-3532637 | MS.gene21618:CDS | 30.0% | |
| TCTAGTATAGTAGAAGTAAC+AGG | - | chr5.2:3533018-3533037 | MS.gene21618:intron | 30.0% | |
| TCTTCATGAAATTGAACACT+AGG | + | chr5.2:3534035-3534054 | None:intergenic | 30.0% | |
| TGACAAAGATTCATCATCAA+TGG | - | chr5.2:3533557-3533576 | MS.gene21618:CDS | 30.0% | |
| TGGAGTAATTGGAAACTATA+TGG | - | chr5.2:3533626-3533645 | MS.gene21618:CDS | 30.0% | |
| TTATGTTCTGCATTAGAAGA+TGG | - | chr5.2:3533606-3533625 | MS.gene21618:CDS | 30.0% | |
| ! | GAGTAGGTAATGCTTTAAAT+TGG | - | chr5.2:3533469-3533488 | MS.gene21618:intron | 30.0% |
| ! | TGAATTTCATGTTTTACCTG+AGG | + | chr5.2:3534104-3534123 | None:intergenic | 30.0% |
| ! | TTAAGCACTTTTGTTCGAAT+TGG | - | chr5.2:3534317-3534336 | MS.gene21618:CDS | 30.0% |
| ! | TTTTTCTGATTGGAGTGAAT+GGG | + | chr5.2:3533191-3533210 | None:intergenic | 30.0% |
| !! | CTCAAGTTGAAAAACAAACA+AGG | - | chr5.2:3533384-3533403 | MS.gene21618:intron | 30.0% |
| !! | TGGCTATAAGACTTTTTCTT+TGG | + | chr5.2:3533702-3533721 | None:intergenic | 30.0% |
| !!! | AGCATTTTTTATGCATTGTG+TGG | - | chr5.2:3532823-3532842 | MS.gene21618:CDS | 30.0% |
| !!! | GAGATTTCCACTTTTTTAAG+AGG | + | chr5.2:3533108-3533127 | None:intergenic | 30.0% |
| !!! | TTATCTATTTTTGGAGCACA+GGG | - | chr5.2:3534734-3534753 | MS.gene21618:CDS | 30.0% |
| !!! | TTTATCTATTTTTGGAGCAC+AGG | - | chr5.2:3534733-3534752 | MS.gene21618:CDS | 30.0% |
| AAACAATAGCAGCACTTTCA+AGG | + | chr5.2:3533758-3533777 | None:intergenic | 35.0% | |
| AAACTGTTCGAATGTGAAGA+CGG | - | chr5.2:3532585-3532604 | MS.gene21618:CDS | 35.0% | |
| AAAGAATGTTCTGACTACTG+TGG | + | chr5.2:3534457-3534476 | None:intergenic | 35.0% | |
| AAATGGCCACAATTCATGAA+AGG | - | chr5.2:3532752-3532771 | MS.gene21618:CDS | 35.0% | |
| ACCTTCTTCAGTAATATCTC+AGG | - | chr5.2:3532879-3532898 | MS.gene21618:intron | 35.0% | |
| ACTAGAACGAAGAATAATGC+AGG | - | chr5.2:3533516-3533535 | MS.gene21618:CDS | 35.0% | |
| ACTAGTGACAACTCTTATTC+TGG | - | chr5.2:3532799-3532818 | MS.gene21618:CDS | 35.0% | |
| AGATTACCATGCAAATGAAC+AGG | + | chr5.2:3533366-3533385 | None:intergenic | 35.0% | |
| CATCAAATCAGTCATAACAG+AGG | - | chr5.2:3534979-3534998 | MS.gene21618:CDS | 35.0% | |
| CATTCACTCCAATCAGAAAA+AGG | - | chr5.2:3533190-3533209 | MS.gene21618:intron | 35.0% | |
| CTTCTTCCTTTCATGAATTG+TGG | + | chr5.2:3532761-3532780 | None:intergenic | 35.0% | |
| GACAGTGTCTAATATTCACA+AGG | - | chr5.2:3535009-3535028 | MS.gene21618:CDS | 35.0% | |
| GATGAACAATCACTTTCTGA+TGG | + | chr5.2:3533150-3533169 | None:intergenic | 35.0% | |
| GCATTAGAAGATGGAGTAAT+TGG | - | chr5.2:3533615-3533634 | MS.gene21618:CDS | 35.0% | |
| GTATTACCAATTGGAAACCA+TGG | - | chr5.2:3533894-3533913 | MS.gene21618:CDS | 35.0% | |
| GTTGATATTTCTCCACAAGA+GGG | + | chr5.2:3534061-3534080 | None:intergenic | 35.0% | |
| TCCTGAGATATTACTGAAGA+AGG | + | chr5.2:3532883-3532902 | None:intergenic | 35.0% | |
| TGAGATGGAAGAACAGAATT+TGG | + | chr5.2:3532562-3532581 | None:intergenic | 35.0% | |
| TTCAACTAATGTCATGCCAA+AGG | + | chr5.2:3534780-3534799 | None:intergenic | 35.0% | |
| ! | CAATCACTTTCTGATGGATA+TGG | + | chr5.2:3533144-3533163 | None:intergenic | 35.0% |
| ! | CTTTTTCTGATTGGAGTGAA+TGG | + | chr5.2:3533192-3533211 | None:intergenic | 35.0% |
| ! | TAGTATGTACATTGGTCTCA+TGG | + | chr5.2:3534595-3534614 | None:intergenic | 35.0% |
| ! | TTGACGAATGTGATTTTGAG+TGG | - | chr5.2:3534165-3534184 | MS.gene21618:CDS | 35.0% |
| !! | AAAGAAAGTACTCCTACCTT+TGG | - | chr5.2:3534761-3534780 | MS.gene21618:CDS | 35.0% |
| !! | AAAGGTAGGAGTACTTTCTT+TGG | + | chr5.2:3534762-3534781 | None:intergenic | 35.0% |
| !! | GGATTTAGCCTTTTTCTGAT+TGG | + | chr5.2:3533201-3533220 | None:intergenic | 35.0% |
| !! | TTCGAACAGTTTTGATGAGA+TGG | + | chr5.2:3532577-3532596 | None:intergenic | 35.0% |
| !!! | TTTCCCTGCATCGATTTTTT+GGG | - | chr5.2:3534274-3534293 | MS.gene21618:CDS | 35.0% |
| AACGAAGAATAATGCAGGCT+TGG | - | chr5.2:3533521-3533540 | MS.gene21618:CDS | 40.0% | |
| ACGAAGAATAATGCAGGCTT+GGG | - | chr5.2:3533522-3533541 | MS.gene21618:CDS | 40.0% | |
| ACTAATGTCATGCCAAAGGT+AGG | + | chr5.2:3534776-3534795 | None:intergenic | 40.0% | |
| ACTAGTGAAGAGATAGCACT+TGG | + | chr5.2:3533858-3533877 | None:intergenic | 40.0% | |
| AGATGATGAAGGTTCTGTTG+AGG | - | chr5.2:3532849-3532868 | MS.gene21618:intron | 40.0% | |
| ATGCAAAATGGCGACACAAA+TGG | + | chr5.2:3534858-3534877 | None:intergenic | 40.0% | |
| ATGCCTTTGTTGCAAAGACA+TGG | - | chr5.2:3533445-3533464 | MS.gene21618:intron | 40.0% | |
| CAGAAGACGCGAAAAATCAA+CGG | - | chr5.2:3534903-3534922 | MS.gene21618:CDS | 40.0% | |
| CATCGATCAAGTAACGATGA+AGG | + | chr5.2:3533945-3533964 | None:intergenic | 40.0% | |
| CTTCATCGTTACTTGATCGA+TGG | - | chr5.2:3533943-3533962 | MS.gene21618:CDS | 40.0% | |
| GCCTAAAATAATAAGAGGGC+AGG | + | chr5.2:3534009-3534028 | None:intergenic | 40.0% | |
| GGCATGACATTAGTTGAAGA+GGG | - | chr5.2:3534782-3534801 | MS.gene21618:CDS | 40.0% | |
| GTGAAGGTGGTATTACCAAT+TGG | - | chr5.2:3533885-3533904 | MS.gene21618:CDS | 40.0% | |
| TCCAACACAACAAAAGATGC+TGG | - | chr5.2:3533285-3533304 | MS.gene21618:intron | 40.0% | |
| TCTCCATGTCTTTGCAACAA+AGG | + | chr5.2:3533451-3533470 | None:intergenic | 40.0% | |
| TGAAGAGATAGCACTTGGTT+TGG | + | chr5.2:3533853-3533872 | None:intergenic | 40.0% | |
| TGGCATGACATTAGTTGAAG+AGG | - | chr5.2:3534781-3534800 | MS.gene21618:CDS | 40.0% | |
| TGTGGAGAAATATCAACCAC+TGG | - | chr5.2:3534064-3534083 | MS.gene21618:CDS | 40.0% | |
| TTACTTGATCGATGGAAACG+TGG | - | chr5.2:3533951-3533970 | MS.gene21618:CDS | 40.0% | |
| TTCACTAGTAGAGCAAGTGA+AGG | - | chr5.2:3533869-3533888 | MS.gene21618:CDS | 40.0% | |
| TTCTTGTTCCTGTGCTTGTA+TGG | - | chr5.2:3532933-3532952 | MS.gene21618:intron | 40.0% | |
| TTGTGTGGTTCAGATGATGA+AGG | - | chr5.2:3532838-3532857 | MS.gene21618:intron | 40.0% | |
| ! | ACGGAGAAAGCATGTAGAAA+TGG | - | chr5.2:3532604-3532623 | MS.gene21618:CDS | 40.0% |
| ! | CACTTTCTGATGGATATGGT+TGG | + | chr5.2:3533140-3533159 | None:intergenic | 40.0% |
| ! | CGGAGAAAGCATGTAGAAAT+GGG | - | chr5.2:3532605-3532624 | MS.gene21618:CDS | 40.0% |
| ! | GCCTGCCCTCTTATTATTTT+AGG | - | chr5.2:3534005-3534024 | MS.gene21618:CDS | 40.0% |
| ! | GGGCGATTTAAAAGCATGTT+TGG | - | chr5.2:3534294-3534313 | MS.gene21618:CDS | 40.0% |
| ! | GGTTGATATTTCTCCACAAG+AGG | + | chr5.2:3534062-3534081 | None:intergenic | 40.0% |
| ! | TTGCAACAAAGGCATGTTCA+GGG | + | chr5.2:3533440-3533459 | None:intergenic | 40.0% |
| ! | TTTGCAACAAAGGCATGTTC+AGG | + | chr5.2:3533441-3533460 | None:intergenic | 40.0% |
| !! | ATTTGTGTCGCCATTTTGCA+TGG | - | chr5.2:3534857-3534876 | MS.gene21618:CDS | 40.0% |
| !! | GAGTTTTCGAAGCATCTTGT+TGG | + | chr5.2:3533722-3533741 | None:intergenic | 40.0% |
| !! | TGGATATGGTTGGTGAGAAT+TGG | + | chr5.2:3533130-3533149 | None:intergenic | 40.0% |
| !!! | GTTTCCCTGCATCGATTTTT+TGG | - | chr5.2:3534273-3534292 | MS.gene21618:CDS | 40.0% |
| ACTAGTAGAGCAAGTGAAGG+TGG | - | chr5.2:3533872-3533891 | MS.gene21618:CDS | 45.0% | |
| ACTCGCCCAATAGGAGAAAA+AGG | + | chr5.2:3535064-3535083 | None:intergenic | 45.0% | |
| ATCGCCCAAAAAATCGATGC+AGG | + | chr5.2:3534281-3534300 | None:intergenic | 45.0% | |
| GATCGGTCAGCACAGAATAA+TGG | - | chr5.2:3534429-3534448 | MS.gene21618:CDS | 45.0% | |
| GCACAGGAACAAGAAACAGA+TGG | + | chr5.2:3532928-3532947 | None:intergenic | 45.0% | |
| GGCAAACCATGGTTTCCAAT+TGG | + | chr5.2:3533903-3533922 | None:intergenic | 45.0% | |
| GTTGCAAAGACATGGAGAGT+AGG | - | chr5.2:3533453-3533472 | MS.gene21618:intron | 45.0% | |
| TCGCCCAAAAAATCGATGCA+GGG | + | chr5.2:3534280-3534299 | None:intergenic | 45.0% | |
| TGCTCACCTGTTCATTTGCA+TGG | - | chr5.2:3533357-3533376 | MS.gene21618:intron | 45.0% | |
| ! | AACCCGCCTTTTTCTCCTAT+TGG | - | chr5.2:3535055-3535074 | MS.gene21618:CDS | 45.0% |
| ! | ACCCGCCTTTTTCTCCTATT+GGG | - | chr5.2:3535056-3535075 | MS.gene21618:CDS | 45.0% |
| ! | TGCAACAAAGGCATGTTCAG+GGG | + | chr5.2:3533439-3533458 | None:intergenic | 45.0% |
| !! | GCCAGCATCTTTTGTTGTGT+TGG | + | chr5.2:3533289-3533308 | None:intergenic | 45.0% |
| CGCCCAATAGGAGAAAAAGG+CGG | + | chr5.2:3535061-3535080 | None:intergenic | 50.0% | |
| CTTGATCGATGGAAACGTGG+TGG | - | chr5.2:3533954-3533973 | MS.gene21618:CDS | 50.0% | |
| GCCCAATAGGAGAAAAAGGC+GGG | + | chr5.2:3535060-3535079 | None:intergenic | 50.0% | |
| GCTGTGTTCCATACAAGCAC+AGG | + | chr5.2:3532944-3532963 | None:intergenic | 50.0% | |
| GGCTGAGAGAAAAGTTCCAG+TGG | + | chr5.2:3534083-3534102 | None:intergenic | 50.0% | |
| GTCTTCTGCCTTAGCGCTAA+AGG | + | chr5.2:3534891-3534910 | None:intergenic | 50.0% | |
| TCATGAAGATCGCCCTCTTG+TGG | - | chr5.2:3534046-3534065 | MS.gene21618:CDS | 50.0% | |
| TTTCAGCACTCGGCAAACCA+TGG | + | chr5.2:3533914-3533933 | None:intergenic | 50.0% | |
| ! | AAAAGGCGGGTTCAGCATAG+AGG | + | chr5.2:3535047-3535066 | None:intergenic | 50.0% |
| ! | AAAGGCGGGTTCAGCATAGA+GGG | + | chr5.2:3535046-3535065 | None:intergenic | 50.0% |
| ! | GGAACTTTTCTCTCAGCCTC+AGG | - | chr5.2:3534085-3534104 | MS.gene21618:CDS | 50.0% |
| !! | TTGCCGAGTGCTGAAAGTGA+GGG | - | chr5.2:3533918-3533937 | MS.gene21618:CDS | 50.0% |
| !! | TTTGCCGAGTGCTGAAAGTG+AGG | - | chr5.2:3533917-3533936 | MS.gene21618:CDS | 50.0% |
| CACCTCTGCCTTTAGCGCTA+AGG | - | chr5.2:3534880-3534899 | MS.gene21618:CDS | 55.0% | |
| GATCGATGGAAACGTGGTGG+AGG | - | chr5.2:3533957-3533976 | MS.gene21618:CDS | 55.0% | |
| GGACCCTCACTTTCAGCACT+CGG | + | chr5.2:3533924-3533943 | None:intergenic | 55.0% | |
| TGCCTTAGCGCTAAAGGCAG+AGG | + | chr5.2:3534885-3534904 | None:intergenic | 55.0% | |
| !! | GGCAGAGGTGCCATGCAAAA+TGG | + | chr5.2:3534870-3534889 | None:intergenic | 55.0% |
| AGGTTGCGACTGTGGTGGCT+GGG | - | chr5.2:3533977-3533996 | MS.gene21618:CDS | 60.0% | |
| CGACTGTGGTGGCTGGGACA+TGG | - | chr5.2:3533983-3534002 | MS.gene21618:CDS | 65.0% | |
| GAGGTTGCGACTGTGGTGGC+TGG | - | chr5.2:3533976-3533995 | MS.gene21618:CDS | 65.0% | |
| GGTGGAGGTTGCGACTGTGG+TGG | - | chr5.2:3533972-3533991 | MS.gene21618:CDS | 65.0% | |
| ! | CGTGGTGGAGGTTGCGACTG+TGG | - | chr5.2:3533969-3533988 | MS.gene21618:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 3532511 | 3535087 | 3532511 | ID=MS.gene21618 |
| chr5.2 | mRNA | 3532511 | 3535087 | 3532511 | ID=MS.gene21618.t1;Parent=MS.gene21618 |
| chr5.2 | exon | 3533492 | 3535087 | 3533492 | ID=MS.gene21618.t1.exon1;Parent=MS.gene21618.t1 |
| chr5.2 | CDS | 3533492 | 3535087 | 3533492 | ID=cds.MS.gene21618.t1;Parent=MS.gene21618.t1 |
| chr5.2 | exon | 3532511 | 3532843 | 3532511 | ID=MS.gene21618.t1.exon2;Parent=MS.gene21618.t1 |
| chr5.2 | CDS | 3532511 | 3532843 | 3532511 | ID=cds.MS.gene21618.t1;Parent=MS.gene21618.t1 |
| Gene Sequence |
| Protein sequence |
