Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21747.t1 | XP_003610861.1 | 96.3 | 189 | 6 | 1 | 1 | 189 | 1 | 188 | 5.40E-100 | 373.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21747.t1 | P91924 | 58.5 | 183 | 73 | 2 | 1 | 183 | 1 | 180 | 1.2e-60 | 234.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21747.t1 | G7K6I1 | 96.3 | 189 | 6 | 1 | 1 | 189 | 1 | 188 | 3.9e-100 | 373.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058117 | MS.gene21747 | 0.807158 | 5.79E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21747.t1 | MTR_5g007820 | 96.296 | 189 | 6 | 1 | 1 | 189 | 1 | 188 | 6.25e-133 | 370 |
| MS.gene21747.t1 | MTR_5g007840 | 73.182 | 220 | 11 | 3 | 1 | 187 | 1 | 205 | 1.26e-105 | 301 |
| MS.gene21747.t1 | MTR_4g077640 | 76.440 | 191 | 42 | 2 | 1 | 191 | 1 | 188 | 2.92e-105 | 300 |
| MS.gene21747.t1 | MTR_5g007810 | 77.297 | 185 | 39 | 2 | 1 | 185 | 1 | 182 | 4.29e-104 | 297 |
| MS.gene21747.t1 | MTR_7g109960 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 1.35e-74 | 222 |
| MS.gene21747.t1 | MTR_1g086480 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 2.21e-74 | 222 |
| MS.gene21747.t1 | MTR_6g005820 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 2.85e-74 | 221 |
| MS.gene21747.t1 | MTR_5g034130 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 4.17e-74 | 221 |
| MS.gene21747.t1 | MTR_5g034125 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 4.17e-74 | 221 |
| MS.gene21747.t1 | MTR_5g016540 | 53.552 | 183 | 82 | 2 | 1 | 183 | 1 | 180 | 1.20e-71 | 215 |
| MS.gene21747.t1 | MTR_4g128910 | 52.486 | 181 | 83 | 2 | 1 | 181 | 1 | 178 | 6.83e-66 | 200 |
| MS.gene21747.t1 | MTR_1g076550 | 45.902 | 183 | 96 | 2 | 1 | 183 | 1 | 180 | 1.24e-54 | 172 |
| MS.gene21747.t1 | MTR_8g077540 | 40.476 | 168 | 94 | 5 | 18 | 183 | 17 | 180 | 4.53e-38 | 129 |
| MS.gene21747.t1 | MTR_8g077540 | 40.476 | 168 | 94 | 5 | 18 | 183 | 43 | 206 | 1.98e-37 | 129 |
| MS.gene21747.t1 | MTR_2g022200 | 30.964 | 197 | 120 | 4 | 1 | 187 | 1 | 191 | 1.55e-27 | 103 |
| MS.gene21747.t1 | MTR_5g078090 | 34.932 | 146 | 91 | 3 | 11 | 155 | 13 | 155 | 1.27e-23 | 92.8 |
| MS.gene21747.t1 | MTR_8g077540 | 47.312 | 93 | 45 | 3 | 18 | 109 | 17 | 106 | 3.20e-23 | 90.1 |
| MS.gene21747.t1 | MTR_5g015370 | 29.670 | 182 | 124 | 3 | 3 | 183 | 5 | 183 | 5.14e-21 | 85.9 |
| MS.gene21747.t1 | MTR_2g034640 | 28.718 | 195 | 114 | 6 | 8 | 181 | 3 | 193 | 1.30e-20 | 85.1 |
| MS.gene21747.t1 | MTR_7g112090 | 33.835 | 133 | 83 | 3 | 17 | 148 | 20 | 148 | 5.65e-20 | 83.2 |
| MS.gene21747.t1 | MTR_4g121860 | 29.775 | 178 | 108 | 5 | 17 | 181 | 20 | 193 | 4.06e-19 | 81.3 |
| MS.gene21747.t1 | MTR_4g026950 | 27.545 | 167 | 117 | 3 | 18 | 183 | 1 | 164 | 2.10e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21747.t1 | AT5G17060 | 74.346 | 191 | 46 | 2 | 1 | 191 | 1 | 188 | 8.15e-103 | 294 |
| MS.gene21747.t1 | AT5G17060 | 74.346 | 191 | 46 | 2 | 1 | 191 | 1 | 188 | 8.15e-103 | 294 |
| MS.gene21747.t1 | AT3G03120 | 73.822 | 191 | 47 | 2 | 1 | 191 | 1 | 188 | 5.42e-102 | 292 |
| MS.gene21747.t1 | AT1G10630 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 1.30e-74 | 222 |
| MS.gene21747.t1 | AT1G10630 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 1.30e-74 | 222 |
| MS.gene21747.t1 | AT2G47170 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 2.92e-74 | 221 |
| MS.gene21747.t1 | AT2G47170 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 2.92e-74 | 221 |
| MS.gene21747.t1 | AT2G47170 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 2.92e-74 | 221 |
| MS.gene21747.t1 | AT1G70490 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 4.42e-74 | 221 |
| MS.gene21747.t1 | AT1G70490 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 4.42e-74 | 221 |
| MS.gene21747.t1 | AT1G70490 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 4.42e-74 | 221 |
| MS.gene21747.t1 | AT1G70490 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 4.42e-74 | 221 |
| MS.gene21747.t1 | AT1G70490 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 4.42e-74 | 221 |
| MS.gene21747.t1 | AT1G70490 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 4.42e-74 | 221 |
| MS.gene21747.t1 | AT1G23490 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 4.42e-74 | 221 |
| MS.gene21747.t1 | AT1G70490 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 4.42e-74 | 221 |
| MS.gene21747.t1 | AT3G62290 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 4.47e-74 | 221 |
| MS.gene21747.t1 | AT3G62290 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 4.47e-74 | 221 |
| MS.gene21747.t1 | AT3G62290 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 4.47e-74 | 221 |
| MS.gene21747.t1 | AT5G14670 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 9.40e-74 | 220 |
| MS.gene21747.t1 | AT5G14670 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 9.40e-74 | 220 |
| MS.gene21747.t1 | AT5G14670 | 55.738 | 183 | 78 | 2 | 1 | 183 | 1 | 180 | 1.94e-73 | 219 |
| MS.gene21747.t1 | AT2G24765 | 52.747 | 182 | 83 | 2 | 1 | 182 | 1 | 179 | 7.37e-67 | 202 |
| MS.gene21747.t1 | AT3G03120 | 73.684 | 133 | 32 | 2 | 1 | 133 | 1 | 130 | 7.83e-66 | 198 |
| MS.gene21747.t1 | AT2G15310 | 48.913 | 184 | 89 | 3 | 1 | 183 | 1 | 180 | 3.62e-62 | 192 |
| MS.gene21747.t1 | AT3G22950 | 46.237 | 186 | 97 | 2 | 1 | 186 | 1 | 183 | 1.46e-56 | 177 |
| MS.gene21747.t1 | AT3G22950 | 46.237 | 186 | 97 | 2 | 1 | 186 | 1 | 183 | 1.46e-56 | 177 |
| MS.gene21747.t1 | AT2G24765 | 53.435 | 131 | 58 | 2 | 1 | 131 | 1 | 128 | 2.37e-46 | 149 |
| MS.gene21747.t1 | AT1G02430 | 41.848 | 184 | 98 | 5 | 1 | 176 | 1 | 183 | 2.77e-43 | 143 |
| MS.gene21747.t1 | AT1G02440 | 40.217 | 184 | 101 | 5 | 1 | 176 | 1 | 183 | 9.01e-42 | 139 |
| MS.gene21747.t1 | AT2G18390 | 40.476 | 168 | 94 | 5 | 18 | 183 | 17 | 180 | 2.13e-38 | 130 |
| MS.gene21747.t1 | AT1G02430 | 38.509 | 161 | 94 | 4 | 1 | 157 | 1 | 160 | 6.67e-32 | 113 |
| MS.gene21747.t1 | AT5G52210 | 31.016 | 187 | 119 | 3 | 8 | 187 | 8 | 191 | 2.01e-27 | 103 |
| MS.gene21747.t1 | AT5G52210 | 31.016 | 187 | 119 | 3 | 8 | 187 | 8 | 191 | 2.01e-27 | 103 |
| MS.gene21747.t1 | AT5G37680 | 33.562 | 146 | 93 | 3 | 11 | 155 | 13 | 155 | 1.14e-22 | 90.1 |
| MS.gene21747.t1 | AT3G49870 | 31.694 | 183 | 119 | 4 | 3 | 183 | 5 | 183 | 1.33e-21 | 87.4 |
| MS.gene21747.t1 | AT3G49860 | 30.952 | 168 | 112 | 3 | 17 | 183 | 11 | 175 | 1.77e-20 | 84.3 |
| MS.gene21747.t1 | AT3G62560 | 30.460 | 174 | 104 | 6 | 17 | 177 | 20 | 189 | 1.41e-19 | 82.4 |
| MS.gene21747.t1 | AT5G67560 | 33.117 | 154 | 97 | 4 | 4 | 155 | 6 | 155 | 1.64e-19 | 82.0 |
| MS.gene21747.t1 | AT4G02080 | 28.652 | 178 | 110 | 5 | 17 | 181 | 20 | 193 | 2.14e-19 | 82.0 |
| MS.gene21747.t1 | AT3G49870 | 31.548 | 168 | 109 | 4 | 18 | 183 | 1 | 164 | 6.04e-19 | 80.1 |
| MS.gene21747.t1 | AT1G09180 | 27.979 | 193 | 118 | 6 | 8 | 181 | 3 | 193 | 7.35e-19 | 80.5 |
| MS.gene21747.t1 | AT1G56330 | 30.667 | 150 | 91 | 4 | 8 | 148 | 3 | 148 | 8.43e-19 | 80.5 |
| MS.gene21747.t1 | AT5G37680 | 33.636 | 110 | 70 | 2 | 46 | 155 | 2 | 108 | 8.99e-17 | 73.6 |
| MS.gene21747.t1 | AT1G02440 | 28.481 | 158 | 74 | 4 | 1 | 157 | 1 | 120 | 2.21e-16 | 72.0 |
Find 41 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTATGGGTCAAGCTTTC+CGG | 0.262750 | 5.2:+2091520 | None:intergenic |
| AAGCATAGAAGGCTCGTTTA+TGG | 0.277630 | 5.2:-2092695 | None:intergenic |
| ATACTCTATAAGCTTCAAAT+TGG | 0.296040 | 5.2:+2091698 | MS.gene21747:CDS |
| AAGCTGTTTGATACCCTCTT+TGG | 0.339347 | 5.2:+2091543 | MS.gene21747:CDS |
| TTGATCTAAGGAATAGAAAA+TGG | 0.343067 | 5.2:+2092961 | MS.gene21747:CDS |
| GATTCGGCCTGTTTGATCTA+AGG | 0.345679 | 5.2:+2092949 | MS.gene21747:CDS |
| CTGGTTGGCTTCAACTTTGA+AGG | 0.359153 | 5.2:+2093037 | MS.gene21747:CDS |
| TATGCTTAACAATATCATAT+TGG | 0.366708 | 5.2:+2092711 | MS.gene21747:CDS |
| ACCAGTCCAAGCCCTCAAAA+AGG | 0.385280 | 5.2:-2093019 | None:intergenic |
| ATGATATTGTTAAGCATAGA+AGG | 0.387835 | 5.2:-2092706 | None:intergenic |
| ACAAGGAACTTGTGCTCTAA+AGG | 0.424299 | 5.2:+2092989 | MS.gene21747:CDS |
| AGAGGGTATCAAACAGCTTC+CGG | 0.431945 | 5.2:-2091539 | None:intergenic |
| TTCTATTCCTTAGATCAAAC+AGG | 0.432195 | 5.2:-2092956 | None:intergenic |
| ATTGGTGTTTGCAAACAAAC+AGG | 0.447495 | 5.2:+2092729 | MS.gene21747:CDS |
| GTTTGGGATGTTGGAGGGCA+AGG | 0.465234 | 5.2:+2092345 | MS.gene21747:CDS |
| TGATCACAGGTTGTGATGGT+TGG | 0.465757 | 5.2:+2091650 | MS.gene21747:intron |
| CAAGGAACTTGTGCTCTAAA+GGG | 0.469282 | 5.2:+2092990 | MS.gene21747:CDS |
| TCTTTGGCAACACTGAGATC+CGG | 0.477419 | 5.2:+2091559 | MS.gene21747:CDS |
| GAGAATAGATCAAGTAAAGC+AGG | 0.487970 | 5.2:+2092572 | MS.gene21747:CDS |
| CTTCTGATCACAGGTTGTGA+TGG | 0.491214 | 5.2:+2091646 | MS.gene21747:intron |
| GAAAGAAGCGATGACGATAA+CGG | 0.496832 | 5.2:+2092914 | MS.gene21747:intron |
| CTTTGGCAACACTGAGATCC+GGG | 0.499319 | 5.2:+2091560 | MS.gene21747:CDS |
| TTTACGGTTTGGGATGTTGG+AGG | 0.504090 | 5.2:+2092339 | MS.gene21747:CDS |
| ACGGAAGTATGTGAAGGATT+CGG | 0.504328 | 5.2:+2092933 | MS.gene21747:CDS |
| TCTTACCAAACCATCAAAGT+TGG | 0.514900 | 5.2:-2092406 | None:intergenic |
| GACACAATTTAAGACCACTT+TGG | 0.521823 | 5.2:+2092370 | MS.gene21747:CDS |
| TTACTTGATCTATTCTCTCA+CGG | 0.522849 | 5.2:-2092566 | None:intergenic |
| GATCTATTCTCTCACGGTCA+TGG | 0.555988 | 5.2:-2092560 | None:intergenic |
| AATAGAAAATGGCACATACA+AGG | 0.575931 | 5.2:+2092972 | MS.gene21747:CDS |
| GTAAAATAGTTCTTCCAAAG+TGG | 0.577261 | 5.2:-2092384 | None:intergenic |
| GTATCTACTATTCCTACAGT+TGG | 0.589390 | 5.2:+2091728 | MS.gene21747:CDS |
| ACTTGTGCTCTAAAGGGAGA+TGG | 0.591043 | 5.2:+2092996 | MS.gene21747:CDS |
| TTACGGTTTGGGATGTTGGA+GGG | 0.592263 | 5.2:+2092340 | MS.gene21747:CDS |
| ATGGTTGGTCTTGACAATGC+TGG | 0.600517 | 5.2:+2091665 | MS.gene21747:CDS |
| GGATCTCAGTGTTGCCAAAG+AGG | 0.610161 | 5.2:-2091557 | None:intergenic |
| GATCTCAGTGTTGCCAAAGA+GGG | 0.611688 | 5.2:-2091556 | None:intergenic |
| AGTAAAGCAGGAATTTCAGA+TGG | 0.613825 | 5.2:+2092584 | MS.gene21747:CDS |
| TTATTAGACATACCAACTGT+AGG | 0.619959 | 5.2:-2091740 | None:intergenic |
| ACGATAACGGAAGTATGTGA+AGG | 0.641532 | 5.2:+2092927 | MS.gene21747:CDS |
| GTTTGCAAACAAACAGGACC+TGG | 0.643314 | 5.2:+2092735 | MS.gene21747:CDS |
| TTGCCTTGCAGGTTTCAACG+TGG | 0.714297 | 5.2:+2092290 | MS.gene21747:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAAATATTGACAATCA+TGG | - | chr5.2:2092884-2092903 | None:intergenic | 20.0% |
| !! | TATGCTTAACAATATCATAT+TGG | + | chr5.2:2092711-2092730 | MS.gene21747:CDS | 20.0% |
| !!! | ATTATTGAAAGTGTTTATGA+AGG | + | chr5.2:2092216-2092235 | MS.gene21747:intron | 20.0% |
| !!! | GTATAAGAATGTTGATTTTA+CGG | + | chr5.2:2092323-2092342 | MS.gene21747:CDS | 20.0% |
| !!! | TTATAAACTGAATTGATTCA+TGG | + | chr5.2:2092657-2092676 | MS.gene21747:intron | 20.0% |
| !!! | TTATTGAAAGTGTTTATGAA+GGG | + | chr5.2:2092217-2092236 | MS.gene21747:intron | 20.0% |
| ! | ACTATATACTGATATAGGTA+GGG | - | chr5.2:2091997-2092016 | None:intergenic | 25.0% |
| ! | ATACTCTATAAGCTTCAAAT+TGG | + | chr5.2:2091698-2091717 | MS.gene21747:CDS | 25.0% |
| ! | ATGATATTGTTAAGCATAGA+AGG | - | chr5.2:2092709-2092728 | None:intergenic | 25.0% |
| ! | GAAAGACTATATACTGATAT+AGG | - | chr5.2:2092002-2092021 | None:intergenic | 25.0% |
| ! | TTCAAAGAGAAAATAGTTGA+TGG | - | chr5.2:2091592-2091611 | None:intergenic | 25.0% |
| ! | TTGATCTAAGGAATAGAAAA+TGG | + | chr5.2:2092961-2092980 | MS.gene21747:CDS | 25.0% |
| !! | AACTATTTTACCAACTTTGA+TGG | + | chr5.2:2092396-2092415 | MS.gene21747:CDS | 25.0% |
| AATAGAAAATGGCACATACA+AGG | + | chr5.2:2092972-2092991 | MS.gene21747:CDS | 30.0% | |
| AGACATAAAAGCAACGAAAT+TGG | - | chr5.2:2092433-2092452 | None:intergenic | 30.0% | |
| CAAAGCAAAACTCAATATGA+GGG | - | chr5.2:2092848-2092867 | None:intergenic | 30.0% | |
| CTATATACTGATATAGGTAG+GGG | - | chr5.2:2091996-2092015 | None:intergenic | 30.0% | |
| GACTATATACTGATATAGGT+AGG | - | chr5.2:2091998-2092017 | None:intergenic | 30.0% | |
| GTAAAATAGTTCTTCCAAAG+TGG | - | chr5.2:2092387-2092406 | None:intergenic | 30.0% | |
| TCAAAGCAAAACTCAATATG+AGG | - | chr5.2:2092849-2092868 | None:intergenic | 30.0% | |
| TTACTTGATCTATTCTCTCA+CGG | - | chr5.2:2092569-2092588 | None:intergenic | 30.0% | |
| TTATTAGACATACCAACTGT+AGG | - | chr5.2:2091743-2091762 | None:intergenic | 30.0% | |
| TTCTATTCCTTAGATCAAAC+AGG | - | chr5.2:2092959-2092978 | None:intergenic | 30.0% | |
| TTCTTTCTACTGCATACAAT+TGG | + | chr5.2:2092788-2092807 | MS.gene21747:intron | 30.0% | |
| ! | ATCAAAGAAAGTACACAAAC+TGG | - | chr5.2:2092182-2092201 | None:intergenic | 30.0% |
| ! | TCATATTGAGTTTTGCTTTG+AGG | + | chr5.2:2092848-2092867 | MS.gene21747:intron | 30.0% |
| !! | TTGCTTTTATGTCTCTTTCT+CGG | + | chr5.2:2092439-2092458 | MS.gene21747:intron | 30.0% |
| !! | TTTTACCAACTTTGATGGTT+TGG | + | chr5.2:2092401-2092420 | MS.gene21747:CDS | 30.0% |
| !!! | AACAATTTATTTTGCCTTGC+AGG | + | chr5.2:2092279-2092298 | MS.gene21747:intron | 30.0% |
| !!! | AGAATGTTGATTTTACGGTT+TGG | + | chr5.2:2092328-2092347 | MS.gene21747:CDS | 30.0% |
| !!! | GAATGTTGATTTTACGGTTT+GGG | + | chr5.2:2092329-2092348 | MS.gene21747:CDS | 30.0% |
| AGTAAAGCAGGAATTTCAGA+TGG | + | chr5.2:2092584-2092603 | MS.gene21747:CDS | 35.0% | |
| ATACTAACGTAAGTGAAGGA+AGG | - | chr5.2:2092509-2092528 | None:intergenic | 35.0% | |
| ATATGAGGGACTAAAATGGT+AGG | - | chr5.2:2092834-2092853 | None:intergenic | 35.0% | |
| CTCAATATGAGGGACTAAAA+TGG | - | chr5.2:2092838-2092857 | None:intergenic | 35.0% | |
| CTGTATCGTACTGTTTATCT+CGG | - | chr5.2:2091862-2091881 | None:intergenic | 35.0% | |
| GAGAATAGATCAAGTAAAGC+AGG | + | chr5.2:2092572-2092591 | MS.gene21747:CDS | 35.0% | |
| GTATCTACTATTCCTACAGT+TGG | + | chr5.2:2091728-2091747 | MS.gene21747:CDS | 35.0% | |
| TATGAGGGACTAAAATGGTA+GGG | - | chr5.2:2092833-2092852 | None:intergenic | 35.0% | |
| TCTTACCAAACCATCAAAGT+TGG | - | chr5.2:2092409-2092428 | None:intergenic | 35.0% | |
| TTTATATGCGTGCGTATTAC+TGG | + | chr5.2:2092631-2092650 | MS.gene21747:intron | 35.0% | |
| TTTGCATCCATTTCATGTGT+TGG | + | chr5.2:2091784-2091803 | MS.gene21747:intron | 35.0% | |
| ! | ATTGGTGTTTGCAAACAAAC+AGG | + | chr5.2:2092729-2092748 | MS.gene21747:CDS | 35.0% |
| ! | CAATTGGTTAAGAAGAGTGT+AGG | + | chr5.2:2092804-2092823 | MS.gene21747:intron | 35.0% |
| ! | GACACAATTTAAGACCACTT+TGG | + | chr5.2:2092370-2092389 | MS.gene21747:CDS | 35.0% |
| !! | AATAGTTGATGGTTGATACC+CGG | - | chr5.2:2091581-2091600 | None:intergenic | 35.0% |
| !! | GCAGATCTTTAGAATAAGCA+AGG | - | chr5.2:2091627-2091646 | None:intergenic | 35.0% |
| !! | GGTCTATATGTTGTTTCGTT+AGG | + | chr5.2:2092253-2092272 | MS.gene21747:intron | 35.0% |
| !! | TGCTTATTTGTTATGCTCAC+AGG | - | chr5.2:2091958-2091977 | None:intergenic | 35.0% |
| AAAGATCTGCTTCTGATCAC+AGG | + | chr5.2:2091637-2091656 | MS.gene21747:intron | 40.0% | |
| AAGCATAGAAGGCTCGTTTA+TGG | - | chr5.2:2092698-2092717 | None:intergenic | 40.0% | |
| AAGCTGTTTGATACCCTCTT+TGG | + | chr5.2:2091543-2091562 | MS.gene21747:CDS | 40.0% | |
| ACAAGGAACTTGTGCTCTAA+AGG | + | chr5.2:2092989-2093008 | MS.gene21747:CDS | 40.0% | |
| AGAAGTAACAAAGACTTGCC+AGG | - | chr5.2:2092756-2092775 | None:intergenic | 40.0% | |
| CATATAGACCCATGTCAAGT+AGG | - | chr5.2:2092243-2092262 | None:intergenic | 40.0% | |
| CTGATATTTCCTTCTCAGCT+AGG | + | chr5.2:2091833-2091852 | MS.gene21747:intron | 40.0% | |
| GAAAGAAGCGATGACGATAA+CGG | + | chr5.2:2092914-2092933 | MS.gene21747:intron | 40.0% | |
| GCACATACTAACGTAAGTGA+AGG | - | chr5.2:2092513-2092532 | None:intergenic | 40.0% | |
| TGAGCTACCAACACATGAAA+TGG | - | chr5.2:2091794-2091813 | None:intergenic | 40.0% | |
| ! | ACGGAAGTATGTGAAGGATT+CGG | + | chr5.2:2092933-2092952 | MS.gene21747:CDS | 40.0% |
| ! | CAAGGAACTTGTGCTCTAAA+GGG | + | chr5.2:2092990-2093009 | MS.gene21747:CDS | 40.0% |
| !! | ACGATAACGGAAGTATGTGA+AGG | + | chr5.2:2092927-2092946 | MS.gene21747:CDS | 40.0% |
| !! | GATTTTACGGTTTGGGATGT+TGG | + | chr5.2:2092336-2092355 | MS.gene21747:CDS | 40.0% |
| !! | TTTCATGTGTTGGTAGCTCA+AGG | + | chr5.2:2091794-2091813 | MS.gene21747:intron | 40.0% |
| ATGAAGGGCCTACTTGACAT+GGG | + | chr5.2:2092232-2092251 | MS.gene21747:intron | 45.0% | |
| CTTCTGATCACAGGTTGTGA+TGG | + | chr5.2:2091646-2091665 | MS.gene21747:intron | 45.0% | |
| GATCTATTCTCTCACGGTCA+TGG | - | chr5.2:2092563-2092582 | None:intergenic | 45.0% | |
| GATCTCAGTGTTGCCAAAGA+GGG | - | chr5.2:2091559-2091578 | None:intergenic | 45.0% | |
| GATTCGGCCTGTTTGATCTA+AGG | + | chr5.2:2092949-2092968 | MS.gene21747:CDS | 45.0% | |
| GTTTGCAAACAAACAGGACC+TGG | + | chr5.2:2092735-2092754 | MS.gene21747:CDS | 45.0% | |
| TATGAAGGGCCTACTTGACA+TGG | + | chr5.2:2092231-2092250 | MS.gene21747:intron | 45.0% | |
| TCTTTGGCAACACTGAGATC+CGG | + | chr5.2:2091559-2091578 | MS.gene21747:CDS | 45.0% | |
| TGATCACAGGTTGTGATGGT+TGG | + | chr5.2:2091650-2091669 | MS.gene21747:intron | 45.0% | |
| ! | AAAGGGAGATGGCCTTTTTG+AGG | + | chr5.2:2093007-2093026 | MS.gene21747:CDS | 45.0% |
| ! | AAGGGAGATGGCCTTTTTGA+GGG | + | chr5.2:2093008-2093027 | MS.gene21747:CDS | 45.0% |
| ! | TTACGGTTTGGGATGTTGGA+GGG | + | chr5.2:2092340-2092359 | MS.gene21747:CDS | 45.0% |
| ! | TTTACGGTTTGGGATGTTGG+AGG | + | chr5.2:2092339-2092358 | MS.gene21747:CDS | 45.0% |
| !! | ACTTGTGCTCTAAAGGGAGA+TGG | + | chr5.2:2092996-2093015 | MS.gene21747:CDS | 45.0% |
| !! | AGAGGGTATCAAACAGCTTC+CGG | - | chr5.2:2091542-2091561 | None:intergenic | 45.0% |
| !! | ATGGTTGGTCTTGACAATGC+TGG | + | chr5.2:2091665-2091684 | MS.gene21747:CDS | 45.0% |
| !! | CTGGTTGGCTTCAACTTTGA+AGG | + | chr5.2:2093037-2093056 | MS.gene21747:CDS | 45.0% |
| ACCAGTCCAAGCCCTCAAAA+AGG | - | chr5.2:2093022-2093041 | None:intergenic | 50.0% | |
| CTTTGGCAACACTGAGATCC+GGG | + | chr5.2:2091560-2091579 | MS.gene21747:CDS | 50.0% | |
| GGATCTCAGTGTTGCCAAAG+AGG | - | chr5.2:2091560-2091579 | None:intergenic | 50.0% | |
| TCTCCACGTTGAAACCTGCA+AGG | - | chr5.2:2092296-2092315 | None:intergenic | 50.0% | |
| TTGCCTTGCAGGTTTCAACG+TGG | + | chr5.2:2092290-2092309 | MS.gene21747:intron | 50.0% | |
| !! | AGATGGCCTTTTTGAGGGCT+TGG | + | chr5.2:2093013-2093032 | MS.gene21747:CDS | 50.0% |
| !!! | TTTTGAGGGCTTGGACTGGT+TGG | + | chr5.2:2093022-2093041 | MS.gene21747:CDS | 50.0% |
| TCTCGGCTTCCTAGCTGAGA+AGG | - | chr5.2:2091845-2091864 | None:intergenic | 55.0% | |
| ! | GTTTGGGATGTTGGAGGGCA+AGG | + | chr5.2:2092345-2092364 | MS.gene21747:CDS | 55.0% |
| !! | GCCTTTTTGAGGGCTTGGAC+TGG | + | chr5.2:2093018-2093037 | MS.gene21747:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 2091525 | 2093091 | 2091525 | ID=MS.gene21747 |
| chr5.2 | mRNA | 2091525 | 2093091 | 2091525 | ID=MS.gene21747.t1;Parent=MS.gene21747 |
| chr5.2 | exon | 2091525 | 2091581 | 2091525 | ID=MS.gene21747.t1.exon1;Parent=MS.gene21747.t1 |
| chr5.2 | CDS | 2091525 | 2091581 | 2091525 | ID=cds.MS.gene21747.t1;Parent=MS.gene21747.t1 |
| chr5.2 | exon | 2091659 | 2091749 | 2091659 | ID=MS.gene21747.t1.exon2;Parent=MS.gene21747.t1 |
| chr5.2 | CDS | 2091659 | 2091749 | 2091659 | ID=cds.MS.gene21747.t1;Parent=MS.gene21747.t1 |
| chr5.2 | exon | 2092301 | 2092422 | 2092301 | ID=MS.gene21747.t1.exon3;Parent=MS.gene21747.t1 |
| chr5.2 | CDS | 2092301 | 2092422 | 2092301 | ID=cds.MS.gene21747.t1;Parent=MS.gene21747.t1 |
| chr5.2 | exon | 2092543 | 2092605 | 2092543 | ID=MS.gene21747.t1.exon4;Parent=MS.gene21747.t1 |
| chr5.2 | CDS | 2092543 | 2092605 | 2092543 | ID=cds.MS.gene21747.t1;Parent=MS.gene21747.t1 |
| chr5.2 | exon | 2092691 | 2092756 | 2092691 | ID=MS.gene21747.t1.exon5;Parent=MS.gene21747.t1 |
| chr5.2 | CDS | 2092691 | 2092756 | 2092691 | ID=cds.MS.gene21747.t1;Parent=MS.gene21747.t1 |
| chr5.2 | exon | 2092915 | 2093091 | 2092915 | ID=MS.gene21747.t1.exon6;Parent=MS.gene21747.t1 |
| chr5.2 | CDS | 2092915 | 2093091 | 2092915 | ID=cds.MS.gene21747.t1;Parent=MS.gene21747.t1 |
| Gene Sequence |
| Protein sequence |