Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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TFs/TRs:
Gene ID | Type | Classification |
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Protein Kinases:
Gene ID | Type | Classification |
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Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene058438 | MS.gene22313 | 0.973603 | 1.04E-136 | -1.69E-46 |
MS.gene060910 | MS.gene22313 | 0.933928 | 8.87E-96 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 27 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTGTTGGTGCTGGTGTTGC+TGG | 0.278594 | 5.4:-4067525 | MS.gene22313:CDS |
CGATGTAGGCGAAGTTAATT+CGG | 0.329255 | 5.4:-4067577 | MS.gene22313:intron |
TATTGCTCTGGTTGTACTCT+TGG | 0.344765 | 5.4:-4067502 | MS.gene22313:CDS |
ACGCGAAAATCAACAAAATC+TGG | 0.381315 | 5.4:+4067993 | None:intergenic |
TGCAAGTATTCCAACGTGTA+TGG | 0.381870 | 5.4:-4068750 | MS.gene22313:CDS |
CTCATCAACATATCGGCATC+AGG | 0.407565 | 5.4:-4067060 | MS.gene22313:CDS |
ATTGCTCTGGTTGTACTCTT+GGG | 0.449876 | 5.4:-4067501 | MS.gene22313:CDS |
AAATCAACAAAATCTGGAAC+AGG | 0.453127 | 5.4:+4067999 | None:intergenic |
TGGTGTTGCTGGTATTGCTC+TGG | 0.454038 | 5.4:-4067514 | MS.gene22313:CDS |
AATGTTATCACTGTTGGTGC+TGG | 0.466483 | 5.4:-4067534 | MS.gene22313:CDS |
CATTTCCCTCATCAACATAT+CGG | 0.470848 | 5.4:-4067067 | MS.gene22313:CDS |
TCAAGAGCAAGAACTGGAAC+AGG | 0.482132 | 5.4:+4067936 | None:intergenic |
CCAGTTCTTGCTCTTGACAT+CGG | 0.484096 | 5.4:-4067930 | MS.gene22313:CDS |
GCAGTTATCAACATCTTCGT+TGG | 0.491361 | 5.4:-4067104 | MS.gene22313:intron |
CTCTGGTTGTACTCTTGGGA+AGG | 0.498339 | 5.4:-4067497 | MS.gene22313:intron |
CCGATGTCAAGAGCAAGAAC+TGG | 0.503027 | 5.4:+4067930 | None:intergenic |
ATATCGGCATCAGGGCAACT+TGG | 0.528755 | 5.4:-4067051 | MS.gene22313:intron |
GCAAGTATTCCAACGTGTAT+GGG | 0.546168 | 5.4:-4068749 | MS.gene22313:intron |
ACAAAGGCGATGAGAAAAGC+TGG | 0.582423 | 5.4:+4067963 | None:intergenic |
GATGCTAATGTTATCACTGT+TGG | 0.589755 | 5.4:-4067540 | MS.gene22313:CDS |
TCATCAACATATCGGCATCA+GGG | 0.604907 | 5.4:-4067059 | MS.gene22313:CDS |
AACTGGAACAGGAACAACAA+AGG | 0.628523 | 5.4:+4067947 | None:intergenic |
CACGTTGGAATACTTGCATG+TGG | 0.643261 | 5.4:+4068755 | None:intergenic |
CTGATGCCGATATGTTGATG+AGG | 0.666580 | 5.4:+4067061 | None:intergenic |
TGATGCCGATATGTTGATGA+GGG | 0.679239 | 5.4:+4067062 | None:intergenic |
AATCTGGAACAGGAACAACA+CGG | 0.752641 | 5.4:+4068009 | None:intergenic |
CTGGAACAGGAACAACACGG+TGG | 0.761866 | 5.4:+4068012 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAATAAAAATAAAAGTAG+TGG | + | chr5.4:4067409-4067428 | None:intergenic | 10.0% |
!!! | TATAGATTGATTTTATATTT+GGG | - | chr5.4:4068590-4068609 | MS.gene22313:intron | 10.0% |
!! | AATATGAAAATTCATTAAAG+AGG | + | chr5.4:4067538-4067557 | None:intergenic | 15.0% |
!! | ATATGAAAATTCATTAAAGA+GGG | + | chr5.4:4067537-4067556 | None:intergenic | 15.0% |
!! | TACTGGATTTATTATATTTA+GGG | - | chr5.4:4067939-4067958 | MS.gene22313:CDS | 15.0% |
!! | TTACTGGATTTATTATATTT+AGG | - | chr5.4:4067938-4067957 | MS.gene22313:CDS | 15.0% |
!!! | AAGTTTTGATTTGATTTATT+TGG | - | chr5.4:4068314-4068333 | MS.gene22313:intron | 15.0% |
!!! | AATTTTGATGAAAATATCAA+AGG | + | chr5.4:4067499-4067518 | None:intergenic | 15.0% |
!!! | ATTTTGATGAAAATATCAAA+GGG | + | chr5.4:4067498-4067517 | None:intergenic | 15.0% |
!!! | CTATAGATTGATTTTATATT+TGG | - | chr5.4:4068589-4068608 | MS.gene22313:intron | 15.0% |
!! | ACTGGATTTATTATATTTAG+GGG | - | chr5.4:4067940-4067959 | MS.gene22313:CDS | 20.0% |
!! | TTACATATAAACAAAACACA+CGG | + | chr5.4:4068499-4068518 | None:intergenic | 20.0% |
!!! | AATTTCATGATGATTGATTT+TGG | + | chr5.4:4067628-4067647 | None:intergenic | 20.0% |
!!! | ATTTCATGATGATTGATTTT+GGG | + | chr5.4:4067627-4067646 | None:intergenic | 20.0% |
!!! | TTTTGATGAAAATATCAAAG+GGG | + | chr5.4:4067497-4067516 | None:intergenic | 20.0% |
! | AAAATAATTCTGATGAGATG+AGG | + | chr5.4:4067920-4067939 | None:intergenic | 25.0% |
! | AAGTGAGAATAATAAAGACA+AGG | + | chr5.4:4068739-4068758 | None:intergenic | 25.0% |
! | AATGAAACAAACAGGAAAAT+AGG | + | chr5.4:4068475-4068494 | None:intergenic | 25.0% |
! | AGGAAATTATCGTATGTAAA+TGG | + | chr5.4:4067087-4067106 | None:intergenic | 25.0% |
! | GTTAATTCGGAAAAATTCAA+CGG | - | chr5.4:4068167-4068186 | MS.gene22313:intron | 25.0% |
! | TTGTAATTTAGTCAAACCAT+TGG | - | chr5.4:4068259-4068278 | MS.gene22313:intron | 25.0% |
! | TTTGATGAAAATATCAAAGG+GGG | + | chr5.4:4067496-4067515 | None:intergenic | 25.0% |
!! | AAAATCTGGAACTTAACTAA+CGG | + | chr5.4:4067678-4067697 | None:intergenic | 25.0% |
!! | ATCAAAATTTCACACGATTT+TGG | + | chr5.4:4067282-4067301 | None:intergenic | 25.0% |
!! | CTTAAGAAGTGTAATTATGA+AGG | - | chr5.4:4068105-4068124 | MS.gene22313:intron | 25.0% |
!! | GAGTTTTTGTCTGAATTTTT+CGG | - | chr5.4:4067206-4067225 | MS.gene22313:intron | 25.0% |
!! | GTCTTTATTATTCTCACTTT+TGG | - | chr5.4:4068740-4068759 | MS.gene22313:intron | 25.0% |
!! | TACTAAAAAAACAGCGTTTT+CGG | - | chr5.4:4067164-4067183 | MS.gene22313:intron | 25.0% |
!! | TCAAAATTTCACACGATTTT+GGG | + | chr5.4:4067281-4067300 | None:intergenic | 25.0% |
!!! | TCTCATCAGAATTATTTTAC+TGG | - | chr5.4:4067922-4067941 | MS.gene22313:CDS | 25.0% |
AAAAGAGGGAAAAAGATGAA+AGG | + | chr5.4:4067597-4067616 | None:intergenic | 30.0% | |
AAAGAGGGAAAAAGATGAAA+GGG | + | chr5.4:4067596-4067615 | None:intergenic | 30.0% | |
AAGTTCGTTCAATCACAAAT+GGG | - | chr5.4:4067883-4067902 | MS.gene22313:intron | 30.0% | |
ACATACGATAATTTCCTTGA+TGG | - | chr5.4:4067090-4067109 | MS.gene22313:CDS | 30.0% | |
ATATTTAGGGGATAGAATGA+AGG | - | chr5.4:4067952-4067971 | MS.gene22313:CDS | 30.0% | |
ATGTGTTCTTCAAACTTTGT+AGG | + | chr5.4:4067438-4067457 | None:intergenic | 30.0% | |
CATACGATAATTTCCTTGAT+GGG | - | chr5.4:4067091-4067110 | MS.gene22313:CDS | 30.0% | |
GTTACTTCTCTCATCTTATA+AGG | - | chr5.4:4067832-4067851 | MS.gene22313:intron | 30.0% | |
TGAACAAACATGATGAAAAG+AGG | + | chr5.4:4067864-4067883 | None:intergenic | 30.0% | |
TTGATGAAAATATCAAAGGG+GGG | + | chr5.4:4067495-4067514 | None:intergenic | 30.0% | |
! | AAATCAACAAAATCTGGAAC+AGG | + | chr5.4:4067735-4067754 | None:intergenic | 30.0% |
! | AAATCTGGAACTTAACTAAC+GGG | + | chr5.4:4067677-4067696 | None:intergenic | 30.0% |
! | ACTTCTTAAGCATCTTTTCA+AGG | + | chr5.4:4068095-4068114 | None:intergenic | 30.0% |
! | GGTTCAATTTCATTGATGAT+GGG | + | chr5.4:4067655-4067674 | None:intergenic | 30.0% |
! | GTTAAGTTCCAGATTTTCAA+TGG | - | chr5.4:4067681-4067700 | MS.gene22313:intron | 30.0% |
! | TCATTAAAGAGGGAAGTTTT+TGG | + | chr5.4:4067527-4067546 | None:intergenic | 30.0% |
! | TGAAATATTCAGACGGATTT+CGG | - | chr5.4:4067379-4067398 | MS.gene22313:intron | 30.0% |
! | TGAATATTTCACACGGTTTT+GGG | + | chr5.4:4067370-4067389 | None:intergenic | 30.0% |
! | TTTGATAGCATGTTCAAACA+AGG | - | chr5.4:4067296-4067315 | MS.gene22313:intron | 30.0% |
!! | ACATTCTTTTTCATTTGAGC+GGG | - | chr5.4:4067454-4067473 | MS.gene22313:intron | 30.0% |
!! | CACATTCTTTTTCATTTGAG+CGG | - | chr5.4:4067453-4067472 | MS.gene22313:intron | 30.0% |
!! | TTTTGTCTGAATTTTTCGGA+CGG | - | chr5.4:4067210-4067229 | MS.gene22313:intron | 30.0% |
!!! | ATTTTGGGTTCAATGAAAAG+AGG | + | chr5.4:4067612-4067631 | None:intergenic | 30.0% |
!!! | TTTTGGGTTCAATGAAAAGA+GGG | + | chr5.4:4067611-4067630 | None:intergenic | 30.0% |
AACCGTGTGAAATATTCAGA+CGG | - | chr5.4:4067372-4067391 | MS.gene22313:intron | 35.0% | |
ACAAGCAGCAAATTCAATCA+AGG | + | chr5.4:4068428-4068447 | None:intergenic | 35.0% | |
ACGCGAAAATCAACAAAATC+TGG | + | chr5.4:4067741-4067760 | None:intergenic | 35.0% | |
AGATGAAAGGGAGTAATGTT+AGG | + | chr5.4:4067584-4067603 | None:intergenic | 35.0% | |
AGGAATGTGAAAGACAAAAG+TGG | + | chr5.4:4068719-4068738 | None:intergenic | 35.0% | |
ATCCGTCTGAATATTTCACA+CGG | + | chr5.4:4067377-4067396 | None:intergenic | 35.0% | |
ATTGTGACGATTATCGATGT+AGG | - | chr5.4:4068140-4068159 | MS.gene22313:intron | 35.0% | |
CAAGTTCGTTCAATCACAAA+TGG | - | chr5.4:4067882-4067901 | MS.gene22313:intron | 35.0% | |
CATTTCCCTCATCAACATAT+CGG | - | chr5.4:4068664-4068683 | MS.gene22313:intron | 35.0% | |
GATGAAAGGGAGTAATGTTA+GGG | + | chr5.4:4067583-4067602 | None:intergenic | 35.0% | |
GATGCTAATGTTATCACTGT+TGG | - | chr5.4:4068191-4068210 | MS.gene22313:intron | 35.0% | |
GGGTTCAATTTCATTGATGA+TGG | + | chr5.4:4067656-4067675 | None:intergenic | 35.0% | |
! | AAAAAAACAGCGTTTTCGGA+CGG | - | chr5.4:4067168-4067187 | MS.gene22313:intron | 35.0% |
! | AATCTGGAACTTAACTAACG+GGG | + | chr5.4:4067676-4067695 | None:intergenic | 35.0% |
! | AGCATCTTTTTGTCCATTGA+TGG | + | chr5.4:4067139-4067158 | None:intergenic | 35.0% |
! | CTGAATATTTCACACGGTTT+TGG | + | chr5.4:4067371-4067390 | None:intergenic | 35.0% |
! | GAAGGTGATTCTTGTGTTTT+GGG | - | chr5.4:4067970-4067989 | MS.gene22313:CDS | 35.0% |
! | TGAAGGTGATTCTTGTGTTT+TGG | - | chr5.4:4067969-4067988 | MS.gene22313:CDS | 35.0% |
!! | AATTTCACACGATTTTGGGA+CGG | + | chr5.4:4067277-4067296 | None:intergenic | 35.0% |
!! | TCTCACTTTTGGTTAAATGC+AGG | - | chr5.4:4068751-4068770 | MS.gene22313:CDS | 35.0% |
!! | TGAATTTTTCGGACGGATTT+GGG | - | chr5.4:4067217-4067236 | MS.gene22313:intron | 35.0% |
AACTGGAACAGGAACAACAA+AGG | + | chr5.4:4067787-4067806 | None:intergenic | 40.0% | |
AATGTTATCACTGTTGGTGC+TGG | - | chr5.4:4068197-4068216 | MS.gene22313:intron | 40.0% | |
AGAGATGAACTTGGATCCAA+TGG | + | chr5.4:4068278-4068297 | None:intergenic | 40.0% | |
ATTGCTCTGGTTGTACTCTT+GGG | - | chr5.4:4068230-4068249 | MS.gene22313:intron | 40.0% | |
CAACGTGTATGGGTAAAAAG+TGG | - | chr5.4:4066992-4067011 | MS.gene22313:intron | 40.0% | |
CAAGAATTTGCCATCCAACA+TGG | - | chr5.4:4068061-4068080 | MS.gene22313:intron | 40.0% | |
CACACGGAAATGAAACAAAC+AGG | + | chr5.4:4068483-4068502 | None:intergenic | 40.0% | |
CATGCAACAAGAGATGAACT+TGG | + | chr5.4:4068287-4068306 | None:intergenic | 40.0% | |
CGATGTAGGCGAAGTTAATT+CGG | - | chr5.4:4068154-4068173 | MS.gene22313:intron | 40.0% | |
GAACAGGACCATTGAAAATC+TGG | + | chr5.4:4067692-4067711 | None:intergenic | 40.0% | |
GCAAGTATTCCAACGTGTAT+GGG | - | chr5.4:4066982-4067001 | MS.gene22313:intron | 40.0% | |
GCAGTTATCAACATCTTCGT+TGG | - | chr5.4:4068627-4068646 | MS.gene22313:intron | 40.0% | |
GTTGGATGGCAAATTCTTGT+TGG | + | chr5.4:4068060-4068079 | None:intergenic | 40.0% | |
TATTGCTCTGGTTGTACTCT+TGG | - | chr5.4:4068229-4068248 | MS.gene22313:intron | 40.0% | |
TCAAGGATCTTAAGCCATGT+TGG | + | chr5.4:4068078-4068097 | None:intergenic | 40.0% | |
TCATCAACATATCGGCATCA+GGG | - | chr5.4:4068672-4068691 | MS.gene22313:intron | 40.0% | |
TGACATGCATATGTGCATTG+AGG | - | chr5.4:4067036-4067055 | MS.gene22313:intron | 40.0% | |
TGCAAGTATTCCAACGTGTA+TGG | - | chr5.4:4066981-4067000 | MS.gene22313:intron | 40.0% | |
TTGGGAGGTAGGAGTAAAAA+TGG | - | chr5.4:4067988-4068007 | MS.gene22313:CDS | 40.0% | |
! | AATCTGGAACAGGAACAACA+CGG | + | chr5.4:4067725-4067744 | None:intergenic | 40.0% |
! | ATATTCAGACGGATTTCGGA+CGG | - | chr5.4:4067383-4067402 | MS.gene22313:intron | 40.0% |
! | TGATGCCGATATGTTGATGA+GGG | + | chr5.4:4068672-4068691 | None:intergenic | 40.0% |
! | TTTCCTTGATGGGTCTTAGT+CGG | - | chr5.4:4067101-4067120 | MS.gene22313:CDS | 40.0% |
!! | CACTTTTTACCCATACACGT+TGG | + | chr5.4:4066994-4067013 | None:intergenic | 40.0% |
!! | CGGATTTGGGACAGTTTTAA+AGG | - | chr5.4:4067230-4067249 | MS.gene22313:intron | 40.0% |
!! | CTGAATTTTTCGGACGGATT+TGG | - | chr5.4:4067216-4067235 | MS.gene22313:intron | 40.0% |
!!! | ATTCTTGTGTTTTGGGAGGT+AGG | - | chr5.4:4067977-4067996 | MS.gene22313:CDS | 40.0% |
!!! | TATTTCACACGGTTTTGGGA+CGG | + | chr5.4:4067366-4067385 | None:intergenic | 40.0% |
ACAAAGGCGATGAGAAAAGC+TGG | + | chr5.4:4067771-4067790 | None:intergenic | 45.0% | |
CACGTTGGAATACTTGCATG+TGG | + | chr5.4:4066979-4066998 | None:intergenic | 45.0% | |
CCAGTTCTTGCTCTTGACAT+CGG | - | chr5.4:4067801-4067820 | MS.gene22313:intron | 45.0% | |
CTCATCAACATATCGGCATC+AGG | - | chr5.4:4068671-4068690 | MS.gene22313:intron | 45.0% | |
CTGATGCCGATATGTTGATG+AGG | + | chr5.4:4068673-4068692 | None:intergenic | 45.0% | |
GAAATTCGTGCGAAACTCGT+GGG | + | chr5.4:4067328-4067347 | None:intergenic | 45.0% | |
GGATCTTAAGCCATGTTGGA+TGG | + | chr5.4:4068074-4068093 | None:intergenic | 45.0% | |
TCAAGAGCAAGAACTGGAAC+AGG | + | chr5.4:4067798-4067817 | None:intergenic | 45.0% | |
TGAAATTCGTGCGAAACTCG+TGG | + | chr5.4:4067329-4067348 | None:intergenic | 45.0% | |
! | GCGTTTTCGGACGGAATTTT+CGG | - | chr5.4:4067177-4067196 | MS.gene22313:intron | 45.0% |
! | TTGTCCATTGATGGCCACAA+TGG | + | chr5.4:4067130-4067149 | None:intergenic | 45.0% |
! | TTTCGGACGGAATTTTCGGA+CGG | - | chr5.4:4067181-4067200 | MS.gene22313:intron | 45.0% |
!! | GGTGATTCTTGTGTTTTGGG+AGG | - | chr5.4:4067973-4067992 | MS.gene22313:CDS | 45.0% |
!!! | ACACGATTTTGGGACGGATT+TGG | + | chr5.4:4067271-4067290 | None:intergenic | 45.0% |
!!! | CACGATTTTGGGACGGATTT+GGG | + | chr5.4:4067270-4067289 | None:intergenic | 45.0% |
ACACGGTGGAAAACTGGAAC+AGG | + | chr5.4:4067708-4067727 | None:intergenic | 50.0% | |
ATATCGGCATCAGGGCAACT+TGG | - | chr5.4:4068680-4068699 | MS.gene22313:intron | 50.0% | |
CCGATGTCAAGAGCAAGAAC+TGG | + | chr5.4:4067804-4067823 | None:intergenic | 50.0% | |
CTCTGGTTGTACTCTTGGGA+AGG | - | chr5.4:4068234-4068253 | MS.gene22313:intron | 50.0% | |
GGAACAACACGGTGGAAAAC+TGG | + | chr5.4:4067714-4067733 | None:intergenic | 50.0% | |
GTAGCCATTGTGGCCATCAA+TGG | - | chr5.4:4067123-4067142 | MS.gene22313:intron | 50.0% | |
GTCTTAGTCGGTAGCCATTG+TGG | - | chr5.4:4067113-4067132 | MS.gene22313:intron | 50.0% | |
! | CTACCGACTAAGACCCATCA+AGG | + | chr5.4:4067107-4067126 | None:intergenic | 50.0% |
!! | TGGTGTTGCTGGTATTGCTC+TGG | - | chr5.4:4068217-4068236 | MS.gene22313:intron | 50.0% |
CTGGAACAGGAACAACACGG+TGG | + | chr5.4:4067722-4067741 | None:intergenic | 55.0% | |
!! | ACTGTTGGTGCTGGTGTTGC+TGG | - | chr5.4:4068206-4068225 | MS.gene22313:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 4066967 | 4068786 | 4066967 | ID=MS.gene22313 |
chr5.4 | mRNA | 4066967 | 4068786 | 4066967 | ID=MS.gene22313.t1;Parent=MS.gene22313 |
chr5.4 | exon | 4068750 | 4068786 | 4068750 | ID=MS.gene22313.t1.exon1;Parent=MS.gene22313.t1 |
chr5.4 | CDS | 4068750 | 4068786 | 4068750 | ID=cds.MS.gene22313.t1;Parent=MS.gene22313.t1 |
chr5.4 | exon | 4067922 | 4068038 | 4067922 | ID=MS.gene22313.t1.exon2;Parent=MS.gene22313.t1 |
chr5.4 | CDS | 4067922 | 4068038 | 4067922 | ID=cds.MS.gene22313.t1;Parent=MS.gene22313.t1 |
chr5.4 | exon | 4067498 | 4067591 | 4067498 | ID=MS.gene22313.t1.exon3;Parent=MS.gene22313.t1 |
chr5.4 | CDS | 4067498 | 4067591 | 4067498 | ID=cds.MS.gene22313.t1;Parent=MS.gene22313.t1 |
chr5.4 | exon | 4067052 | 4067122 | 4067052 | ID=MS.gene22313.t1.exon4;Parent=MS.gene22313.t1 |
chr5.4 | CDS | 4067052 | 4067122 | 4067052 | ID=cds.MS.gene22313.t1;Parent=MS.gene22313.t1 |
chr5.4 | exon | 4066967 | 4066980 | 4066967 | ID=MS.gene22313.t1.exon5;Parent=MS.gene22313.t1 |
chr5.4 | CDS | 4066967 | 4066980 | 4066967 | ID=cds.MS.gene22313.t1;Parent=MS.gene22313.t1 |
Gene Sequence |
Protein sequence |