Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22458.t1 | XP_024625178.1 | 96.4 | 276 | 10 | 0 | 1 | 276 | 27 | 302 | 1.40E-146 | 528.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22458.t1 | Q9ZQC6 | 54.3 | 289 | 119 | 3 | 1 | 276 | 27 | 315 | 5.0e-79 | 295.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22458.t1 | Q599J6 | 96.4 | 276 | 10 | 0 | 1 | 276 | 27 | 302 | 1.0e-146 | 528.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene058206 | MS.gene22458 | 0.808588 | 2.88E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22458.t1 | MTR_3g111060 | 51.075 | 186 | 90 | 1 | 78 | 263 | 187 | 371 | 1.02e-62 | 204 |
MS.gene22458.t1 | MTR_3g110142 | 45.833 | 192 | 96 | 3 | 75 | 262 | 178 | 365 | 4.12e-53 | 177 |
MS.gene22458.t1 | MTR_3g110142 | 45.833 | 192 | 96 | 3 | 75 | 262 | 178 | 365 | 1.37e-52 | 177 |
MS.gene22458.t1 | MTR_5g016600 | 25.630 | 238 | 137 | 6 | 75 | 273 | 147 | 383 | 4.15e-16 | 78.2 |
MS.gene22458.t1 | MTR_4g094912 | 23.596 | 267 | 164 | 8 | 23 | 253 | 98 | 360 | 3.48e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22458.t1 | AT2G37090 | 56.207 | 290 | 112 | 4 | 1 | 276 | 27 | 315 | 9.88e-110 | 321 |
MS.gene22458.t1 | AT1G27600 | 51.630 | 184 | 88 | 1 | 77 | 260 | 139 | 321 | 9.34e-63 | 202 |
MS.gene22458.t1 | AT1G27600 | 51.630 | 184 | 88 | 1 | 77 | 260 | 139 | 321 | 9.34e-63 | 202 |
MS.gene22458.t1 | AT5G67230 | 26.271 | 236 | 136 | 6 | 70 | 268 | 143 | 377 | 3.50e-16 | 78.6 |
Find 36 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATTCAGTTGATTCGGTTT+TGG | 0.249913 | 7.1:+8326669 | None:intergenic |
CTGAATTGCCAGAGATATTA+AGG | 0.252875 | 7.1:-8326654 | MS.gene22458:CDS |
CATTCAATAGCTCCATTCTC+TGG | 0.283106 | 7.1:-8325301 | MS.gene22458:CDS |
AGTGGGATTGTTCACTTTGC+TGG | 0.287605 | 7.1:-8326517 | MS.gene22458:CDS |
TGACAATTGAGCAGGGTCTT+TGG | 0.307848 | 7.1:-8325470 | MS.gene22458:intron |
GACAATTGAGCAGGGTCTTT+GGG | 0.324790 | 7.1:-8325469 | MS.gene22458:intron |
CAGTGAAGAGTTCATGGACT+TGG | 0.355535 | 7.1:-8326599 | MS.gene22458:CDS |
CTCTGGCAATTCAGTTGATT+CGG | 0.377196 | 7.1:+8326663 | None:intergenic |
CCAGAGATATTAAGGAAAAC+TGG | 0.381352 | 7.1:-8326646 | MS.gene22458:CDS |
TGGCTATGGATTCTAGGTGC+TGG | 0.412979 | 7.1:+8326877 | None:intergenic |
TTAGGCTTCAATTGAGGTAG+TGG | 0.414050 | 7.1:+8326814 | None:intergenic |
TTCACAGGTTTAGCTCCAAC+AGG | 0.416327 | 7.1:-8327015 | MS.gene22458:CDS |
TTGTTGATCAACCATTGCTT+TGG | 0.416490 | 7.1:-8326705 | MS.gene22458:CDS |
GGAAAACTGGTATCATGTAT+AGG | 0.420160 | 7.1:-8326633 | MS.gene22458:CDS |
TTCTCTGGGACCCTGAGAGA+TGG | 0.425575 | 7.1:-8325286 | MS.gene22458:CDS |
TCTCTGGGACCCTGAGAGAT+GGG | 0.437280 | 7.1:-8325285 | MS.gene22458:CDS |
AATATTAAAGATTTACCTGT+TGG | 0.438372 | 7.1:+8327000 | None:intergenic |
TGTGACTCATCTCAAGTCAT+TGG | 0.453499 | 7.1:-8325386 | MS.gene22458:CDS |
GAAGTGCGACCCCATCTCTC+AGG | 0.454040 | 7.1:+8325275 | None:intergenic |
TCTCTCAGGGTCCCAGAGAA+TGG | 0.466645 | 7.1:+8325289 | None:intergenic |
ACTTGAGATGAGTCACAAAC+AGG | 0.479029 | 7.1:+8325392 | None:intergenic |
TGCAAAACTTGAAATATGAA+TGG | 0.482368 | 7.1:+8325322 | None:intergenic |
GCAAAACTTGAAATATGAAT+GGG | 0.488014 | 7.1:+8325323 | None:intergenic |
ACTCAATATCTCTAAGCTGT+TGG | 0.489245 | 7.1:+8326464 | None:intergenic |
ATCTGTTAAAGACACTTCTC+AGG | 0.492365 | 7.1:-8325252 | MS.gene22458:intron |
GAAGATCATAAACATTAGAA+AGG | 0.518111 | 7.1:+8326494 | None:intergenic |
GTTGACATTTGAGAAGGTTG+TGG | 0.518182 | 7.1:+8326928 | None:intergenic |
ATTGAACATCATAGACTAAG+TGG | 0.529187 | 7.1:-8326535 | MS.gene22458:CDS |
ATTCAATAGCTCCATTCTCT+GGG | 0.531877 | 7.1:-8325300 | MS.gene22458:CDS |
TGAGCAGGGTCTTTGGGACA+TGG | 0.550048 | 7.1:-8325463 | MS.gene22458:intron |
ACTCATCTCAAGTCATTGGA+TGG | 0.599669 | 7.1:-8325382 | MS.gene22458:CDS |
CTCTGGGACCCTGAGAGATG+GGG | 0.602550 | 7.1:-8325284 | MS.gene22458:CDS |
AAGTGCGACCCCATCTCTCA+GGG | 0.603068 | 7.1:+8325276 | None:intergenic |
TTTGCAAGTAATAATGCTGT+TGG | 0.605742 | 7.1:+8325440 | None:intergenic |
TCGACAACAATCCAAAGCAA+TGG | 0.628366 | 7.1:+8326694 | None:intergenic |
TTGAACATCATAGACTAAGT+GGG | 0.641248 | 7.1:-8326534 | MS.gene22458:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAAAATCAAAATAAATTG+AGG | + | chr7.1:8326823-8326842 | None:intergenic | 10.0% |
!!! | AATTTTTTTATTAAAATACC+CGG | + | chr7.1:8325949-8325968 | None:intergenic | 10.0% |
!! | AAAATTAGGACAATAAAAAA+AGG | + | chr7.1:8325713-8325732 | None:intergenic | 15.0% |
!!! | AATAAACAACTTTTTTCAAT+TGG | - | chr7.1:8325761-8325780 | MS.gene22458:intron | 15.0% |
!!! | TATTTTTTTTTAAATCACCT+AGG | + | chr7.1:8326421-8326440 | None:intergenic | 15.0% |
!! | AATATTAAAGATTTACCTGT+TGG | + | chr7.1:8324941-8324960 | None:intergenic | 20.0% |
!! | ATTTCAACATCAAAGAAAAT+AGG | + | chr7.1:8326909-8326928 | None:intergenic | 20.0% |
!! | CTACGCTTAAAAAATTATAT+TGG | - | chr7.1:8326345-8326364 | MS.gene22458:intron | 20.0% |
!! | GTCAAATGAATACATAATTA+AGG | + | chr7.1:8326452-8326471 | None:intergenic | 20.0% |
!!! | AAATGTTTTTTTGAGAAGAT+TGG | - | chr7.1:8325195-8325214 | MS.gene22458:intron | 20.0% |
!!! | AAATTAGTTTAGCAAATAGA+AGG | + | chr7.1:8325513-8325532 | None:intergenic | 20.0% |
!!! | AATTAGTTTAGCAAATAGAA+GGG | + | chr7.1:8325512-8325531 | None:intergenic | 20.0% |
!!! | AATTGTTACCGAAAATATTT+TGG | - | chr7.1:8326852-8326871 | MS.gene22458:CDS | 20.0% |
!!! | ACTATGATTAAAAGTCTTTT+AGG | + | chr7.1:8325145-8325164 | None:intergenic | 20.0% |
!!! | AGTCATTCTAAAAGAATTTT+AGG | - | chr7.1:8326061-8326080 | MS.gene22458:intron | 20.0% |
!!! | ATTGATGATTTTCAATTTCA+CGG | - | chr7.1:8326272-8326291 | MS.gene22458:intron | 20.0% |
!!! | ATTGTTACCGAAAATATTTT+GGG | - | chr7.1:8326853-8326872 | MS.gene22458:CDS | 20.0% |
!!! | CTCAAAAAAACATTTTGATA+AGG | + | chr7.1:8325190-8325209 | None:intergenic | 20.0% |
!!! | TGTTAATTTGTTATGTCTTA+TGG | - | chr7.1:8325563-8325582 | MS.gene22458:intron | 20.0% |
!!! | TTTAATCCCCAAAATATTTT+CGG | + | chr7.1:8326863-8326882 | None:intergenic | 20.0% |
! | AACATATACCAATTGAAGTT+TGG | + | chr7.1:8326767-8326786 | None:intergenic | 25.0% |
! | AATATTAGAAACCAAGTTAC+TGG | + | chr7.1:8325995-8326014 | None:intergenic | 25.0% |
! | AGAAAAAGAGTGATAATTGA+AGG | - | chr7.1:8326522-8326541 | MS.gene22458:CDS | 25.0% |
! | ATTTGAAGAAAAGTTGTATG+CGG | - | chr7.1:8326883-8326902 | MS.gene22458:CDS | 25.0% |
! | CAAAAAATGGTAACAAAAGT+TGG | - | chr7.1:8325032-8325051 | MS.gene22458:intron | 25.0% |
! | CTACTAGCTACATTAAAATT+AGG | + | chr7.1:8325727-8325746 | None:intergenic | 25.0% |
! | GAAGATCATAAACATTAGAA+AGG | + | chr7.1:8325447-8325466 | None:intergenic | 25.0% |
! | GCAAAACTTGAAATATGAAT+GGG | + | chr7.1:8326618-8326637 | None:intergenic | 25.0% |
! | TCTCAAATGTCAACAAAAAA+TGG | - | chr7.1:8325019-8325038 | MS.gene22458:intron | 25.0% |
! | TGCAAAACTTGAAATATGAA+TGG | + | chr7.1:8326619-8326638 | None:intergenic | 25.0% |
! | TTAAAACTCCTGTATATGTA+GGG | + | chr7.1:8325683-8325702 | None:intergenic | 25.0% |
! | TTCATCATTTACACTCTTAT+AGG | - | chr7.1:8327001-8327020 | MS.gene22458:CDS | 25.0% |
! | TTGTCCTAAATAACTTGAAA+CGG | - | chr7.1:8325595-8325614 | MS.gene22458:intron | 25.0% |
!! | ATTAGTTTAGCAAATAGAAG+GGG | + | chr7.1:8325511-8325530 | None:intergenic | 25.0% |
!! | TTGTTACCGAAAATATTTTG+GGG | - | chr7.1:8326854-8326873 | MS.gene22458:CDS | 25.0% |
!! | TTTTATCATGTTTATTACGC+AGG | + | chr7.1:8325621-8325640 | None:intergenic | 25.0% |
!! | TTTTCAATTGGATGGAAAAA+AGG | - | chr7.1:8325773-8325792 | MS.gene22458:intron | 25.0% |
!!! | AACAACTTTTTTCAATTGGA+TGG | - | chr7.1:8325765-8325784 | MS.gene22458:intron | 25.0% |
!!! | CTAATTTTAATGTAGCTAGT+AGG | - | chr7.1:8325725-8325744 | MS.gene22458:intron | 25.0% |
!!! | TGCGATCAATGATTTTATTT+TGG | + | chr7.1:8326039-8326058 | None:intergenic | 25.0% |
!!! | TTTTTTGTTGACATTTGAGA+AGG | + | chr7.1:8325019-8325038 | None:intergenic | 25.0% |
AATTCTTCAAATCTTTCCTC+TGG | - | chr7.1:8325853-8325872 | MS.gene22458:intron | 30.0% | |
AGCGTAGATATTTGACAATT+TGG | + | chr7.1:8326332-8326351 | None:intergenic | 30.0% | |
AGGCTAGTAAGAAAATCTTT+AGG | - | chr7.1:8325793-8325812 | MS.gene22458:intron | 30.0% | |
ATTCATTTGACAATTGAGCA+GGG | - | chr7.1:8326461-8326480 | MS.gene22458:intron | 30.0% | |
ATTGAACATCATAGACTAAG+TGG | - | chr7.1:8325403-8325422 | MS.gene22458:CDS | 30.0% | |
CATGATATTTCAAACTTCCT+AGG | - | chr7.1:8326401-8326420 | MS.gene22458:intron | 30.0% | |
GACAGAAATATCCATTCAAA+AGG | - | chr7.1:8326083-8326102 | MS.gene22458:intron | 30.0% | |
GTTAAAACTCCTGTATATGT+AGG | + | chr7.1:8325684-8325703 | None:intergenic | 30.0% | |
TAGATCATTTGAGAATTCGT+TGG | - | chr7.1:8326135-8326154 | MS.gene22458:intron | 30.0% | |
TATTCATTTGACAATTGAGC+AGG | - | chr7.1:8326460-8326479 | MS.gene22458:intron | 30.0% | |
TTAAATAGAGCCTTCTTTAG+TGG | - | chr7.1:8325878-8325897 | MS.gene22458:intron | 30.0% | |
TTGAACATCATAGACTAAGT+GGG | - | chr7.1:8325404-8325423 | MS.gene22458:CDS | 30.0% | |
TTTGCAAGTAATAATGCTGT+TGG | + | chr7.1:8326501-8326520 | None:intergenic | 30.0% | |
! | ATAACTACAGTCCTTTTGAA+TGG | + | chr7.1:8326097-8326116 | None:intergenic | 30.0% |
! | TCGATCTTTAAGTTAGATAC+CGG | - | chr7.1:8325927-8325946 | MS.gene22458:intron | 30.0% |
!! | ATTTTAATGTAGCTAGTAGG+TGG | - | chr7.1:8325728-8325747 | MS.gene22458:intron | 30.0% |
ACTCAATATCTCTAAGCTGT+TGG | + | chr7.1:8325477-8325496 | None:intergenic | 35.0% | |
ACTGCACACAATACATCAAT+TGG | - | chr7.1:8325640-8325659 | MS.gene22458:intron | 35.0% | |
ATCTGTTAAAGACACTTCTC+AGG | - | chr7.1:8326686-8326705 | MS.gene22458:CDS | 35.0% | |
ATTCAATAGCTCCATTCTCT+GGG | - | chr7.1:8326638-8326657 | MS.gene22458:CDS | 35.0% | |
CACACAATACATCAATTGGT+GGG | - | chr7.1:8325644-8325663 | MS.gene22458:intron | 35.0% | |
CCAGAGATATTAAGGAAAAC+TGG | - | chr7.1:8325292-8325311 | MS.gene22458:CDS | 35.0% | |
CTGAATTGCCAGAGATATTA+AGG | - | chr7.1:8325284-8325303 | MS.gene22458:CDS | 35.0% | |
GCTCAAAACCAAACTTCAAT+TGG | - | chr7.1:8326756-8326775 | MS.gene22458:CDS | 35.0% | |
GGAAAACTGGTATCATGTAT+AGG | - | chr7.1:8325305-8325324 | MS.gene22458:CDS | 35.0% | |
TTGTTGATCAACCATTGCTT+TGG | - | chr7.1:8325233-8325252 | MS.gene22458:intron | 35.0% | |
! | AGTCTTTTAGGCTTCAATTG+AGG | + | chr7.1:8325133-8325152 | None:intergenic | 35.0% |
! | CCAGTTTTCCTTAATATCTC+TGG | + | chr7.1:8325295-8325314 | None:intergenic | 35.0% |
! | CGATCTTTAAGTTAGATACC+GGG | - | chr7.1:8325928-8325947 | MS.gene22458:intron | 35.0% |
! | TGTTTTCAGTGAAGAGTTCA+TGG | - | chr7.1:8325333-8325352 | MS.gene22458:CDS | 35.0% |
!!! | CAATTCAGTTGATTCGGTTT+TGG | + | chr7.1:8325272-8325291 | None:intergenic | 35.0% |
!!! | GTTTTTTGGCTATGGATTCT+AGG | + | chr7.1:8325070-8325089 | None:intergenic | 35.0% |
!!! | TAAGGTAGTTTTGTGCTTGT+TGG | + | chr7.1:8325172-8325191 | None:intergenic | 35.0% |
ACTCATCTCAAGTCATTGGA+TGG | - | chr7.1:8326556-8326575 | MS.gene22458:CDS | 40.0% | |
ACTCCTGTATATGTAGGGTT+CGG | + | chr7.1:8325678-8325697 | None:intergenic | 40.0% | |
ACTTGAGATGAGTCACAAAC+AGG | + | chr7.1:8326549-8326568 | None:intergenic | 40.0% | |
ATCTCATCGTCCACTAAAGA+AGG | + | chr7.1:8325891-8325910 | None:intergenic | 40.0% | |
CATTCAATAGCTCCATTCTC+TGG | - | chr7.1:8326637-8326656 | MS.gene22458:CDS | 40.0% | |
CTCTGGCAATTCAGTTGATT+CGG | + | chr7.1:8325278-8325297 | None:intergenic | 40.0% | |
GCACACAATACATCAATTGG+TGG | - | chr7.1:8325643-8325662 | MS.gene22458:intron | 40.0% | |
GTTGACATTTGAGAAGGTTG+TGG | + | chr7.1:8325013-8325032 | None:intergenic | 40.0% | |
TCGACAACAATCCAAAGCAA+TGG | + | chr7.1:8325247-8325266 | None:intergenic | 40.0% | |
TGGTCATCACTACAATGTGA+GGG | + | chr7.1:8325975-8325994 | None:intergenic | 40.0% | |
TGTAGTGATGACCAGTAACT+TGG | - | chr7.1:8325981-8326000 | MS.gene22458:intron | 40.0% | |
TGTGACTCATCTCAAGTCAT+TGG | - | chr7.1:8326552-8326571 | MS.gene22458:CDS | 40.0% | |
TTAGGCTTCAATTGAGGTAG+TGG | + | chr7.1:8325127-8325146 | None:intergenic | 40.0% | |
! | AAGGCTCTATTTAAAGCCAG+AGG | + | chr7.1:8325872-8325891 | None:intergenic | 40.0% |
!! | CAGGCCGTTTCAAGTTATTT+AGG | + | chr7.1:8325602-8325621 | None:intergenic | 40.0% |
!!! | CTGCTGTTGTTTTTTGGCTA+TGG | + | chr7.1:8325078-8325097 | None:intergenic | 40.0% |
!!! | TTGCTGCTGCTGTTGTTTTT+TGG | + | chr7.1:8325084-8325103 | None:intergenic | 40.0% |
AGTGGGATTGTTCACTTTGC+TGG | - | chr7.1:8325421-8325440 | MS.gene22458:CDS | 45.0% | |
CAGTGAAGAGTTCATGGACT+TGG | - | chr7.1:8325339-8325358 | MS.gene22458:CDS | 45.0% | |
CTGGTCATCACTACAATGTG+AGG | + | chr7.1:8325976-8325995 | None:intergenic | 45.0% | |
GACAATTGAGCAGGGTCTTT+GGG | - | chr7.1:8326469-8326488 | MS.gene22458:CDS | 45.0% | |
TGACAATTGAGCAGGGTCTT+TGG | - | chr7.1:8326468-8326487 | MS.gene22458:CDS | 45.0% | |
! | TTCACAGGTTTAGCTCCAAC+AGG | - | chr7.1:8324923-8324942 | MS.gene22458:intron | 45.0% |
TCGCCGAACCCTACATATAC+AGG | - | chr7.1:8325672-8325691 | MS.gene22458:intron | 50.0% | |
TGGCTATGGATTCTAGGTGC+TGG | + | chr7.1:8325064-8325083 | None:intergenic | 50.0% | |
TGTATATGTAGGGTTCGGCG+AGG | + | chr7.1:8325673-8325692 | None:intergenic | 50.0% | |
AAGTGCGACCCCATCTCTCA+GGG | + | chr7.1:8326665-8326684 | None:intergenic | 55.0% | |
TCTCTCAGGGTCCCAGAGAA+TGG | + | chr7.1:8326652-8326671 | None:intergenic | 55.0% | |
!! | TCTCTGGGACCCTGAGAGAT+GGG | - | chr7.1:8326653-8326672 | MS.gene22458:CDS | 55.0% |
!! | TGAGCAGGGTCTTTGGGACA+TGG | - | chr7.1:8326475-8326494 | MS.gene22458:CDS | 55.0% |
!! | TTCTCTGGGACCCTGAGAGA+TGG | - | chr7.1:8326652-8326671 | MS.gene22458:CDS | 55.0% |
GAAGTGCGACCCCATCTCTC+AGG | + | chr7.1:8326666-8326685 | None:intergenic | 60.0% | |
!! | CTCTGGGACCCTGAGAGATG+GGG | - | chr7.1:8326654-8326673 | MS.gene22458:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 8324914 | 8327046 | 8324914 | ID=MS.gene22458 |
chr7.1 | mRNA | 8324914 | 8327046 | 8324914 | ID=MS.gene22458.t1;Parent=MS.gene22458 |
chr7.1 | exon | 8326466 | 8327046 | 8326466 | ID=MS.gene22458.t1.exon1;Parent=MS.gene22458.t1 |
chr7.1 | CDS | 8326466 | 8327046 | 8326466 | ID=cds.MS.gene22458.t1;Parent=MS.gene22458.t1 |
chr7.1 | exon | 8325253 | 8325478 | 8325253 | ID=MS.gene22458.t1.exon2;Parent=MS.gene22458.t1 |
chr7.1 | CDS | 8325253 | 8325478 | 8325253 | ID=cds.MS.gene22458.t1;Parent=MS.gene22458.t1 |
chr7.1 | exon | 8324914 | 8324937 | 8324914 | ID=MS.gene22458.t1.exon3;Parent=MS.gene22458.t1 |
chr7.1 | CDS | 8324914 | 8324937 | 8324914 | ID=cds.MS.gene22458.t1;Parent=MS.gene22458.t1 |
Gene Sequence |
Protein sequence |