Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22488.t1 | XP_004493910.1 | 90.9 | 405 | 35 | 2 | 1 | 403 | 36 | 440 | 6.10E-186 | 660.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22488.t1 | F4JY11 | 72.2 | 403 | 112 | 0 | 1 | 403 | 38 | 440 | 2.3e-162 | 573.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22488.t1 | A0A1S2XSL9 | 90.9 | 405 | 35 | 2 | 1 | 403 | 36 | 440 | 4.4e-186 | 660.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene25783 | MS.gene22488 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22488.t1 | MTR_7g100360 | 98.280 | 407 | 3 | 1 | 1 | 403 | 38 | 444 | 0.0 | 813 |
| MS.gene22488.t1 | MTR_1g067370 | 85.360 | 403 | 56 | 2 | 1 | 403 | 40 | 439 | 0.0 | 642 |
| MS.gene22488.t1 | MTR_3g080830 | 52.956 | 406 | 182 | 5 | 1 | 403 | 38 | 437 | 1.60e-146 | 423 |
| MS.gene22488.t1 | MTR_1g025450 | 59.333 | 150 | 59 | 1 | 1 | 150 | 315 | 462 | 5.39e-36 | 139 |
| MS.gene22488.t1 | MTR_1g061930 | 35.537 | 121 | 75 | 3 | 285 | 402 | 1 | 121 | 5.84e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22488.t1 | AT5G18520 | 80.397 | 403 | 79 | 0 | 1 | 403 | 38 | 440 | 0.0 | 672 |
| MS.gene22488.t1 | AT3G09570 | 77.419 | 403 | 91 | 0 | 1 | 403 | 37 | 439 | 0.0 | 631 |
| MS.gene22488.t1 | AT5G02630 | 64.706 | 391 | 131 | 3 | 1 | 389 | 36 | 421 | 0.0 | 512 |
| MS.gene22488.t1 | AT5G42090 | 52.346 | 405 | 189 | 3 | 1 | 403 | 37 | 439 | 1.02e-149 | 431 |
Find 88 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTAACTTTCTTTGTATTT+TGG | 0.133925 | 7.1:-7940347 | MS.gene22488:CDS |
| TCACCGCATTCATCTTCTTA+TGG | 0.284793 | 7.1:-7940292 | MS.gene22488:CDS |
| TGTGATTCCTCTGCAAGTTT+TGG | 0.286595 | 7.1:-7940052 | MS.gene22488:CDS |
| GTAACCCAATCTTTGATAAA+AGG | 0.306214 | 7.1:+7939994 | None:intergenic |
| GAAACCGAGACGGGAGGATT+CGG | 0.318301 | 7.1:+7940695 | None:intergenic |
| AAACCGAGACGGGAGGATTC+GGG | 0.347123 | 7.1:+7940696 | None:intergenic |
| GGAGATGGTGACGTGGCCTT+TGG | 0.356483 | 7.1:+7940761 | None:intergenic |
| GGATTCGGGTTGGGAGGAGG+AGG | 0.366479 | 7.1:+7940710 | None:intergenic |
| TTATCAAAGATTGGGTTACT+TGG | 0.371451 | 7.1:-7939990 | MS.gene22488:CDS |
| GGAGGATTCGGGTTGGGAGG+AGG | 0.372265 | 7.1:+7940707 | None:intergenic |
| GCGGTGAATAGAACGTTTAT+TGG | 0.391274 | 7.1:+7940308 | None:intergenic |
| AGATTGGGTTACTTGGAATC+AGG | 0.404748 | 7.1:-7939983 | MS.gene22488:CDS |
| AAGAAGAGACTGTATTCGTT+AGG | 0.422783 | 7.1:+7940510 | None:intergenic |
| GAGATGGTGACGTGGCCTTT+GGG | 0.424270 | 7.1:+7940762 | None:intergenic |
| TTGCTGCTTATAAGTATCAA+TGG | 0.424992 | 7.1:-7939759 | MS.gene22488:CDS |
| AAGCAGCTCAAATTGCTCTC+AGG | 0.433578 | 7.1:-7939624 | MS.gene22488:CDS |
| GGCTGTATTGCTTATCATGA+AGG | 0.435459 | 7.1:-7940271 | MS.gene22488:CDS |
| AATTTAGCTTCCGTTGTGAT+TGG | 0.437101 | 7.1:-7940027 | MS.gene22488:CDS |
| GAGACGGGAGGATTCGGGTT+GGG | 0.437820 | 7.1:+7940701 | None:intergenic |
| AAGCATTATGTTAAGGTCAC+TGG | 0.448272 | 7.1:-7940219 | MS.gene22488:CDS |
| GGAGGAGGAGAGAGGAGTGA+CGG | 0.449807 | 7.1:+7940725 | None:intergenic |
| AACATGGAAACAGAGGTTTC+AGG | 0.453845 | 7.1:+7940474 | None:intergenic |
| ACGGGAGGATTCGGGTTGGG+AGG | 0.462015 | 7.1:+7940704 | None:intergenic |
| TTCCGTTGTGATTGGTGAGA+CGG | 0.473034 | 7.1:-7940019 | MS.gene22488:CDS |
| TATTCGTTAGGGGTAGTGAC+GGG | 0.478207 | 7.1:+7940522 | None:intergenic |
| TTTGGTCTATTAGATCACTT+AGG | 0.480355 | 7.1:-7939909 | MS.gene22488:CDS |
| GTTGGATCTCGATGAGGACT+TGG | 0.482187 | 7.1:+7940646 | None:intergenic |
| TTGGTCTATTAGATCACTTA+GGG | 0.482990 | 7.1:-7939908 | MS.gene22488:CDS |
| AGAAGAGACTGTATTCGTTA+GGG | 0.483772 | 7.1:+7940511 | None:intergenic |
| GTTCTATATGTTTAGACCTG+TGG | 0.484013 | 7.1:-7939686 | MS.gene22488:CDS |
| AGAGGATAAGCATTATGTTA+AGG | 0.486485 | 7.1:-7940226 | MS.gene22488:CDS |
| TGCTGCTTATAAGTATCAAT+GGG | 0.491550 | 7.1:-7939758 | MS.gene22488:CDS |
| GGTTGGGAGGAGGAGGAGAG+AGG | 0.501579 | 7.1:+7940717 | None:intergenic |
| AATCTCGGTGCGAACGAACA+TGG | 0.502025 | 7.1:+7940458 | None:intergenic |
| TGTTCTTGATGAGGAGGAAG+AGG | 0.503016 | 7.1:-7939647 | MS.gene22488:CDS |
| TTAAGTAAGCAAGGAAGAAG+AGG | 0.505449 | 7.1:+7940364 | None:intergenic |
| TCCGTTGTGATTGGTGAGAC+GGG | 0.506473 | 7.1:-7940018 | MS.gene22488:CDS |
| TTGAAGGAAGCTGAGGGAGG+AGG | 0.517250 | 7.1:+7940555 | None:intergenic |
| AAGGTCACTGGTTTACCTCA+TGG | 0.517901 | 7.1:-7940207 | MS.gene22488:CDS |
| AGCAGCTCAAATTGCTCTCA+GGG | 0.524563 | 7.1:-7939623 | MS.gene22488:CDS |
| TCTCGATGAGGACTTGGATG+AGG | 0.525605 | 7.1:+7940652 | None:intergenic |
| GATCTAATAGACCAAACGAT+AGG | 0.528991 | 7.1:+7939916 | None:intergenic |
| CAAAGAAAGTTAAGTAAGCA+AGG | 0.529021 | 7.1:+7940355 | None:intergenic |
| AGGGAGGAGGAGAGAGGTCA+CGG | 0.532880 | 7.1:+7940568 | None:intergenic |
| ATCTAATAGACCAAACGATA+GGG | 0.534064 | 7.1:+7939917 | None:intergenic |
| CACTGGTTTACCTCATGGAT+GGG | 0.537772 | 7.1:-7940202 | MS.gene22488:CDS |
| TCTAAAGACTATCTCTCCGC+TGG | 0.539952 | 7.1:-7940414 | MS.gene22488:CDS |
| CTCGATGAGGACTTGGATGA+GGG | 0.546281 | 7.1:+7940653 | None:intergenic |
| TCACTGGTTTACCTCATGGA+TGG | 0.546620 | 7.1:-7940203 | MS.gene22488:CDS |
| GAATCGAGGACGCAGAAGGA+AGG | 0.547651 | 7.1:+7940618 | None:intergenic |
| GGATGAGGGTTTCTTCGTTG+AGG | 0.548877 | 7.1:+7940667 | None:intergenic |
| GACGGGGTAAGAGCGGTTGA+AGG | 0.557679 | 7.1:+7940539 | None:intergenic |
| TGAGTACTTTGTTCTTGATG+AGG | 0.557725 | 7.1:-7939656 | MS.gene22488:CDS |
| GTGAGAATCGAGGACGCAGA+AGG | 0.568947 | 7.1:+7940614 | None:intergenic |
| AAACAGATGGAAAAGCTTCG+AGG | 0.570433 | 7.1:-7939876 | MS.gene22488:CDS |
| GAGAGGAGTGACGGAGACAG+AGG | 0.573405 | 7.1:+7940734 | None:intergenic |
| CAACCCGAATCCTCCCGTCT+CGG | 0.573986 | 7.1:-7940699 | MS.gene22488:CDS |
| GGTCACGGAAAGTGAAGAGA+CGG | 0.574075 | 7.1:+7940583 | None:intergenic |
| AGTGACGGAGACAGAGGAGA+CGG | 0.587327 | 7.1:+7940740 | None:intergenic |
| AGAGCGGTTGAAGGAAGCTG+AGG | 0.588689 | 7.1:+7940548 | None:intergenic |
| GTACTTTGTTCTTGATGAGG+AGG | 0.589383 | 7.1:-7939653 | MS.gene22488:CDS |
| AATCGAGGACGCAGAAGGAA+GGG | 0.591154 | 7.1:+7940619 | None:intergenic |
| AGGGAAACATCGAAAACAGA+TGG | 0.594318 | 7.1:-7939889 | MS.gene22488:CDS |
| TGAGGGTTTCTTCGTTGAGG+AGG | 0.595629 | 7.1:+7940670 | None:intergenic |
| GTCACGGAAAGTGAAGAGAC+GGG | 0.595959 | 7.1:+7940584 | None:intergenic |
| GTATTCGTTAGGGGTAGTGA+CGG | 0.596419 | 7.1:+7940521 | None:intergenic |
| CGAGACGGGAGGATTCGGGT+TGG | 0.598000 | 7.1:+7940700 | None:intergenic |
| GAGGAGGAAGAAACCGAGAC+GGG | 0.604086 | 7.1:+7940686 | None:intergenic |
| GAATCTTATCTGTGCTGCAG+AGG | 0.612979 | 7.1:-7940244 | MS.gene22488:CDS |
| TGAATCGAGATTGAAAATCT+CGG | 0.615126 | 7.1:+7940443 | None:intergenic |
| GGAGACAGAGGAGACGGAGA+TGG | 0.624066 | 7.1:+7940746 | None:intergenic |
| AAATTCGGTTTCACTCCCAA+AGG | 0.630515 | 7.1:-7940777 | MS.gene22488:CDS |
| AAATTAGCCAAAACTTGCAG+AGG | 0.630803 | 7.1:+7940045 | None:intergenic |
| GGGTAGTGACGGGGTAAGAG+CGG | 0.632558 | 7.1:+7940532 | None:intergenic |
| AGGGAGTTGAGTTTGTCCAG+CGG | 0.637182 | 7.1:+7940398 | None:intergenic |
| TGAGGAGGAAGAAACCGAGA+CGG | 0.644160 | 7.1:+7940685 | None:intergenic |
| CGGTTGAAGGAAGCTGAGGG+AGG | 0.648892 | 7.1:+7940552 | None:intergenic |
| ATTCGTTAGGGGTAGTGACG+GGG | 0.652907 | 7.1:+7940523 | None:intergenic |
| GAGGAAGAAACCGAGACGGG+AGG | 0.660795 | 7.1:+7940689 | None:intergenic |
| AAGCTGAGGGAGGAGGAGAG+AGG | 0.665731 | 7.1:+7940562 | None:intergenic |
| AGGAGACGGAGATGGTGACG+TGG | 0.672788 | 7.1:+7940754 | None:intergenic |
| GAGCGGTTGAAGGAAGCTGA+GGG | 0.672908 | 7.1:+7940549 | None:intergenic |
| GAAGAGACTGTATTCGTTAG+GGG | 0.686725 | 7.1:+7940512 | None:intergenic |
| GGGAAATGTAGTGAGAATCG+AGG | 0.693182 | 7.1:+7940604 | None:intergenic |
| GCGAACGAACATGGAAACAG+AGG | 0.693889 | 7.1:+7940467 | None:intergenic |
| ACCCGTCTCACCAATCACAA+CGG | 0.703906 | 7.1:+7940017 | None:intergenic |
| AACAATACATCCCATCCATG+AGG | 0.704032 | 7.1:+7940192 | None:intergenic |
| CAGCCATAAGAAGATGAATG+CGG | 0.723985 | 7.1:+7940289 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTATATTGTTGTTATT+GGG | - | chr7.1:7940570-7940589 | MS.gene22488:CDS | 15.0% |
| !!! | ACTTAACTTTCTTTGTATTT+TGG | - | chr7.1:7940048-7940067 | MS.gene22488:CDS | 20.0% |
| !!! | CAGTTTTATATTGTTGTTAT+TGG | - | chr7.1:7940569-7940588 | MS.gene22488:CDS | 20.0% |
| !!! | TTTACTGTTATTGTTTTGAT+CGG | - | chr7.1:7940260-7940279 | MS.gene22488:CDS | 20.0% |
| AGAGGATAAGCATTATGTTA+AGG | - | chr7.1:7940169-7940188 | MS.gene22488:CDS | 30.0% | |
| ATCTAATAGACCAAACGATA+GGG | + | chr7.1:7940481-7940500 | None:intergenic | 30.0% | |
| ATGATCCTCTTCGAAAAATT+CGG | - | chr7.1:7939603-7939622 | MS.gene22488:CDS | 30.0% | |
| CAAAGAAAGTTAAGTAAGCA+AGG | + | chr7.1:7940043-7940062 | None:intergenic | 30.0% | |
| GTAACCCAATCTTTGATAAA+AGG | + | chr7.1:7940404-7940423 | None:intergenic | 30.0% | |
| TGAATCGAGATTGAAAATCT+CGG | + | chr7.1:7939955-7939974 | None:intergenic | 30.0% | |
| TTATCAAAGATTGGGTTACT+TGG | - | chr7.1:7940405-7940424 | MS.gene22488:CDS | 30.0% | |
| TTGGTCTATTAGATCACTTA+GGG | - | chr7.1:7940487-7940506 | MS.gene22488:CDS | 30.0% | |
| TTTGGTCTATTAGATCACTT+AGG | - | chr7.1:7940486-7940505 | MS.gene22488:CDS | 30.0% | |
| ! | ATTTTCAATCTCGATTCAGA+CGG | - | chr7.1:7939957-7939976 | MS.gene22488:CDS | 30.0% |
| ! | CTATTATTTTCCCTATCGTT+TGG | - | chr7.1:7940468-7940487 | MS.gene22488:CDS | 30.0% |
| ! | TGCTGCTTATAAGTATCAAT+GGG | - | chr7.1:7940637-7940656 | MS.gene22488:CDS | 30.0% |
| ! | TTGCTGCTTATAAGTATCAA+TGG | - | chr7.1:7940636-7940655 | MS.gene22488:CDS | 30.0% |
| ! | TTTTCCCTATCTTGCAAAAA+CGG | + | chr7.1:7940308-7940327 | None:intergenic | 30.0% |
| AAATTAGCCAAAACTTGCAG+AGG | + | chr7.1:7940353-7940372 | None:intergenic | 35.0% | |
| AAGAAGAGACTGTATTCGTT+AGG | + | chr7.1:7939888-7939907 | None:intergenic | 35.0% | |
| AAGAAGAGGAAAAAGAGAGA+AGG | + | chr7.1:7940020-7940039 | None:intergenic | 35.0% | |
| AAGCATTATGTTAAGGTCAC+TGG | - | chr7.1:7940176-7940195 | MS.gene22488:CDS | 35.0% | |
| AGAAGAGACTGTATTCGTTA+GGG | + | chr7.1:7939887-7939906 | None:intergenic | 35.0% | |
| AGAAGAGGAAAAAGAGAGAA+GGG | + | chr7.1:7940019-7940038 | None:intergenic | 35.0% | |
| GATCTAATAGACCAAACGAT+AGG | + | chr7.1:7940482-7940501 | None:intergenic | 35.0% | |
| GTTCTATATGTTTAGACCTG+TGG | - | chr7.1:7940709-7940728 | MS.gene22488:CDS | 35.0% | |
| TGAGTACTTTGTTCTTGATG+AGG | - | chr7.1:7940739-7940758 | MS.gene22488:CDS | 35.0% | |
| TTAAGTAAGCAAGGAAGAAG+AGG | + | chr7.1:7940034-7940053 | None:intergenic | 35.0% | |
| ! | AATTTAGCTTCCGTTGTGAT+TGG | - | chr7.1:7940368-7940387 | MS.gene22488:CDS | 35.0% |
| ! | GGGTCCTTTTATCAAAGATT+GGG | - | chr7.1:7940397-7940416 | MS.gene22488:CDS | 35.0% |
| !! | AAGTACTCATTTTTCTCCAC+AGG | + | chr7.1:7940728-7940747 | None:intergenic | 35.0% |
| !! | GAAACCGTTTTTGCAAGATA+GGG | - | chr7.1:7940301-7940320 | MS.gene22488:CDS | 35.0% |
| !! | TGAAACCGAATTTTTCGAAG+AGG | + | chr7.1:7939611-7939630 | None:intergenic | 35.0% |
| !! | TGAAACCGTTTTTGCAAGAT+AGG | - | chr7.1:7940300-7940319 | MS.gene22488:CDS | 35.0% |
| !!! | GTTATTGTTTTGATCGGTAC+TGG | - | chr7.1:7940266-7940285 | MS.gene22488:CDS | 35.0% |
| AAACAGATGGAAAAGCTTCG+AGG | - | chr7.1:7940519-7940538 | MS.gene22488:CDS | 40.0% | |
| AAATTCGGTTTCACTCCCAA+AGG | - | chr7.1:7939618-7939637 | MS.gene22488:CDS | 40.0% | |
| AACAATACATCCCATCCATG+AGG | + | chr7.1:7940206-7940225 | None:intergenic | 40.0% | |
| AACATGGAAACAGAGGTTTC+AGG | + | chr7.1:7939924-7939943 | None:intergenic | 40.0% | |
| AGATTGGGTTACTTGGAATC+AGG | - | chr7.1:7940412-7940431 | MS.gene22488:CDS | 40.0% | |
| AGGGAAACATCGAAAACAGA+TGG | - | chr7.1:7940506-7940525 | MS.gene22488:CDS | 40.0% | |
| CAGCCATAAGAAGATGAATG+CGG | + | chr7.1:7940109-7940128 | None:intergenic | 40.0% | |
| GAAGAGACTGTATTCGTTAG+GGG | + | chr7.1:7939886-7939905 | None:intergenic | 40.0% | |
| GCGGTGAATAGAACGTTTAT+TGG | + | chr7.1:7940090-7940109 | None:intergenic | 40.0% | |
| GGCTGTATTGCTTATCATGA+AGG | - | chr7.1:7940124-7940143 | MS.gene22488:CDS | 40.0% | |
| GTACTTTGTTCTTGATGAGG+AGG | - | chr7.1:7940742-7940761 | MS.gene22488:CDS | 40.0% | |
| TCACCGCATTCATCTTCTTA+TGG | - | chr7.1:7940103-7940122 | MS.gene22488:CDS | 40.0% | |
| ! | CGGGTCCTTTTATCAAAGAT+TGG | - | chr7.1:7940396-7940415 | MS.gene22488:CDS | 40.0% |
| ! | TGTGATTCCTCTGCAAGTTT+TGG | - | chr7.1:7940343-7940362 | MS.gene22488:CDS | 40.0% |
| !!! | TTGTTTTGATCGGTACTGGT+TGG | - | chr7.1:7940270-7940289 | MS.gene22488:CDS | 40.0% |
| AAGCAGCTCAAATTGCTCTC+AGG | - | chr7.1:7940771-7940790 | MS.gene22488:CDS | 45.0% | |
| AGCAGCTCAAATTGCTCTCA+GGG | - | chr7.1:7940772-7940791 | MS.gene22488:CDS | 45.0% | |
| GAATCTTATCTGTGCTGCAG+AGG | - | chr7.1:7940151-7940170 | MS.gene22488:CDS | 45.0% | |
| GGGAAATGTAGTGAGAATCG+AGG | + | chr7.1:7939794-7939813 | None:intergenic | 45.0% | |
| GTATTCGTTAGGGGTAGTGA+CGG | + | chr7.1:7939877-7939896 | None:intergenic | 45.0% | |
| TATTCGTTAGGGGTAGTGAC+GGG | + | chr7.1:7939876-7939895 | None:intergenic | 45.0% | |
| TCTAAAGACTATCTCTCCGC+TGG | - | chr7.1:7939981-7940000 | MS.gene22488:CDS | 45.0% | |
| TGTTCTTGATGAGGAGGAAG+AGG | - | chr7.1:7940748-7940767 | MS.gene22488:CDS | 45.0% | |
| TTCCGTTGTGATTGGTGAGA+CGG | - | chr7.1:7940376-7940395 | MS.gene22488:CDS | 45.0% | |
| !! | AAGGTCACTGGTTTACCTCA+TGG | - | chr7.1:7940188-7940207 | MS.gene22488:CDS | 45.0% |
| !! | CACTGGTTTACCTCATGGAT+GGG | - | chr7.1:7940193-7940212 | MS.gene22488:CDS | 45.0% |
| !! | TCACTGGTTTACCTCATGGA+TGG | - | chr7.1:7940192-7940211 | MS.gene22488:CDS | 45.0% |
| !!! | GGTTTTGTTGGATCTCGATG+AGG | + | chr7.1:7939758-7939777 | None:intergenic | 45.0% |
| AATCGAGGACGCAGAAGGAA+GGG | + | chr7.1:7939779-7939798 | None:intergenic | 50.0% | |
| ACCCGTCTCACCAATCACAA+CGG | + | chr7.1:7940381-7940400 | None:intergenic | 50.0% | |
| AGGGAGTTGAGTTTGTCCAG+CGG | + | chr7.1:7940000-7940019 | None:intergenic | 50.0% | |
| ATTCGTTAGGGGTAGTGACG+GGG | + | chr7.1:7939875-7939894 | None:intergenic | 50.0% | |
| CTCGATGAGGACTTGGATGA+GGG | + | chr7.1:7939745-7939764 | None:intergenic | 50.0% | |
| GCGAACGAACATGGAAACAG+AGG | + | chr7.1:7939931-7939950 | None:intergenic | 50.0% | |
| GGATGAGGGTTTCTTCGTTG+AGG | + | chr7.1:7939731-7939750 | None:intergenic | 50.0% | |
| GGTCACGGAAAGTGAAGAGA+CGG | + | chr7.1:7939815-7939834 | None:intergenic | 50.0% | |
| GTCACGGAAAGTGAAGAGAC+GGG | + | chr7.1:7939814-7939833 | None:intergenic | 50.0% | |
| GTTGGATCTCGATGAGGACT+TGG | + | chr7.1:7939752-7939771 | None:intergenic | 50.0% | |
| TCCGTTGTGATTGGTGAGAC+GGG | - | chr7.1:7940377-7940396 | MS.gene22488:CDS | 50.0% | |
| TCTCGATGAGGACTTGGATG+AGG | + | chr7.1:7939746-7939765 | None:intergenic | 50.0% | |
| TGAGGAGGAAGAAACCGAGA+CGG | + | chr7.1:7939713-7939732 | None:intergenic | 50.0% | |
| TGAGGGTTTCTTCGTTGAGG+AGG | + | chr7.1:7939728-7939747 | None:intergenic | 50.0% | |
| ! | AATCTCGGTGCGAACGAACA+TGG | + | chr7.1:7939940-7939959 | None:intergenic | 50.0% |
| !! | CGCAGAAGGAAGGGTTTTGT+TGG | + | chr7.1:7939770-7939789 | None:intergenic | 50.0% |
| AAACCGAGACGGGAGGATTC+GGG | + | chr7.1:7939702-7939721 | None:intergenic | 55.0% | |
| AGAGCGGTTGAAGGAAGCTG+AGG | + | chr7.1:7939850-7939869 | None:intergenic | 55.0% | |
| GAAACCGAGACGGGAGGATT+CGG | + | chr7.1:7939703-7939722 | None:intergenic | 55.0% | |
| GAATCGAGGACGCAGAAGGA+AGG | + | chr7.1:7939780-7939799 | None:intergenic | 55.0% | |
| GAGCGGTTGAAGGAAGCTGA+GGG | + | chr7.1:7939849-7939868 | None:intergenic | 55.0% | |
| GAGGAGGAAGAAACCGAGAC+GGG | + | chr7.1:7939712-7939731 | None:intergenic | 55.0% | |
| GTGAGAATCGAGGACGCAGA+AGG | + | chr7.1:7939784-7939803 | None:intergenic | 55.0% | |
| TTGAAGGAAGCTGAGGGAGG+AGG | + | chr7.1:7939843-7939862 | None:intergenic | 55.0% | |
| ! | AGTGACGGAGACAGAGGAGA+CGG | + | chr7.1:7939658-7939677 | None:intergenic | 55.0% |
| ! | GAGATGGTGACGTGGCCTTT+GGG | + | chr7.1:7939636-7939655 | None:intergenic | 55.0% |
| AAGCTGAGGGAGGAGGAGAG+AGG | + | chr7.1:7939836-7939855 | None:intergenic | 60.0% | |
| AGGGAGGAGGAGAGAGGTCA+CGG | + | chr7.1:7939830-7939849 | None:intergenic | 60.0% | |
| CAACCCGAATCCTCCCGTCT+CGG | - | chr7.1:7939696-7939715 | MS.gene22488:CDS | 60.0% | |
| CGGTTGAAGGAAGCTGAGGG+AGG | + | chr7.1:7939846-7939865 | None:intergenic | 60.0% | |
| GACGGGGTAAGAGCGGTTGA+AGG | + | chr7.1:7939859-7939878 | None:intergenic | 60.0% | |
| GAGGAAGAAACCGAGACGGG+AGG | + | chr7.1:7939709-7939728 | None:intergenic | 60.0% | |
| GGAGACAGAGGAGACGGAGA+TGG | + | chr7.1:7939652-7939671 | None:intergenic | 60.0% | |
| GGAGGAGGAGAGAGGAGTGA+CGG | + | chr7.1:7939673-7939692 | None:intergenic | 60.0% | |
| ! | AGGAGACGGAGATGGTGACG+TGG | + | chr7.1:7939644-7939663 | None:intergenic | 60.0% |
| ! | GAGACGGGAGGATTCGGGTT+GGG | + | chr7.1:7939697-7939716 | None:intergenic | 60.0% |
| ! | GAGAGGAGTGACGGAGACAG+AGG | + | chr7.1:7939664-7939683 | None:intergenic | 60.0% |
| ! | GGAGATGGTGACGTGGCCTT+TGG | + | chr7.1:7939637-7939656 | None:intergenic | 60.0% |
| ! | GGGTAGTGACGGGGTAAGAG+CGG | + | chr7.1:7939866-7939885 | None:intergenic | 60.0% |
| CGAGACGGGAGGATTCGGGT+TGG | + | chr7.1:7939698-7939717 | None:intergenic | 65.0% | |
| GGTTGGGAGGAGGAGGAGAG+AGG | + | chr7.1:7939681-7939700 | None:intergenic | 65.0% | |
| !! | ACGGGAGGATTCGGGTTGGG+AGG | + | chr7.1:7939694-7939713 | None:intergenic | 65.0% |
| !! | GGAGGATTCGGGTTGGGAGG+AGG | + | chr7.1:7939691-7939710 | None:intergenic | 65.0% |
| !! | GGATTCGGGTTGGGAGGAGG+AGG | + | chr7.1:7939688-7939707 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 7939603 | 7940814 | 7939603 | ID=MS.gene22488 |
| chr7.1 | mRNA | 7939603 | 7940814 | 7939603 | ID=MS.gene22488.t1;Parent=MS.gene22488 |
| chr7.1 | exon | 7939603 | 7940814 | 7939603 | ID=MS.gene22488.t1.exon1;Parent=MS.gene22488.t1 |
| chr7.1 | CDS | 7939603 | 7940814 | 7939603 | ID=cds.MS.gene22488.t1;Parent=MS.gene22488.t1 |
| Gene Sequence |
| Protein sequence |
