Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22613.t1 | RHN42285.1 | 68.5 | 127 | 38 | 2 | 42 | 167 | 126 | 251 | 5.90E-34 | 154.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22613.t1 | Q56XX3 | 58.0 | 112 | 40 | 2 | 63 | 167 | 95 | 206 | 3.3e-25 | 116.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22613.t1 | A0A396GU09 | 68.5 | 127 | 38 | 2 | 42 | 167 | 126 | 251 | 4.3e-34 | 154.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05415 | MS.gene22613 | 0.80249 | 5.47E-49 | -1.69E-46 |
| MS.gene05669 | MS.gene22613 | 0.805712 | 1.17E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22613.t1 | MTR_2g078470 | 65.574 | 61 | 21 | 0 | 1 | 61 | 260 | 320 | 9.75e-21 | 87.8 |
| MS.gene22613.t1 | MTR_2g078470 | 63.934 | 61 | 22 | 0 | 1 | 61 | 122 | 182 | 1.71e-20 | 87.0 |
| MS.gene22613.t1 | MTR_2g078470 | 63.934 | 61 | 22 | 0 | 1 | 61 | 53 | 113 | 1.88e-19 | 84.0 |
| MS.gene22613.t1 | MTR_2g078470 | 65.574 | 61 | 21 | 0 | 1 | 61 | 191 | 251 | 4.50e-18 | 80.5 |
| MS.gene22613.t1 | MTR_2g078470 | 73.913 | 46 | 12 | 0 | 1 | 46 | 329 | 374 | 1.27e-13 | 67.8 |
| MS.gene22613.t1 | MTR_5g010840 | 73.684 | 57 | 15 | 0 | 1 | 57 | 155 | 211 | 1.57e-20 | 87.4 |
| MS.gene22613.t1 | MTR_5g010840 | 59.701 | 67 | 27 | 0 | 1 | 67 | 308 | 374 | 3.25e-20 | 86.3 |
| MS.gene22613.t1 | MTR_5g010840 | 63.934 | 61 | 22 | 0 | 1 | 61 | 239 | 299 | 2.77e-19 | 84.0 |
| MS.gene22613.t1 | MTR_6g043150 | 46.000 | 100 | 37 | 2 | 1 | 100 | 53 | 135 | 1.67e-20 | 86.7 |
| MS.gene22613.t1 | MTR_6g043150 | 65.574 | 61 | 21 | 0 | 1 | 61 | 260 | 320 | 6.03e-20 | 85.1 |
| MS.gene22613.t1 | MTR_6g043150 | 60.656 | 61 | 24 | 0 | 1 | 61 | 191 | 251 | 1.34e-16 | 75.9 |
| MS.gene22613.t1 | MTR_6g043150 | 56.140 | 57 | 25 | 0 | 1 | 57 | 122 | 178 | 2.75e-15 | 72.0 |
| MS.gene22613.t1 | MTR_6g043130 | 77.500 | 40 | 9 | 0 | 98 | 137 | 14 | 53 | 5.42e-14 | 63.2 |
| MS.gene22613.t1 | MTR_8g080350 | 52.459 | 61 | 29 | 0 | 1 | 61 | 169 | 229 | 2.37e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22613.t1 | AT2G02148 | 58.036 | 112 | 40 | 2 | 63 | 167 | 95 | 206 | 2.32e-33 | 122 |
| MS.gene22613.t1 | AT2G02148 | 58.036 | 112 | 40 | 2 | 63 | 167 | 95 | 206 | 2.32e-33 | 122 |
| MS.gene22613.t1 | AT2G02148 | 58.036 | 112 | 40 | 2 | 63 | 167 | 95 | 206 | 2.32e-33 | 122 |
| MS.gene22613.t1 | AT2G02148 | 58.036 | 112 | 40 | 2 | 63 | 167 | 95 | 206 | 2.32e-33 | 122 |
| MS.gene22613.t1 | AT2G02148 | 58.036 | 112 | 40 | 2 | 63 | 167 | 95 | 206 | 2.77e-33 | 122 |
Find 44 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGGATGTTGATTGTGAT+TGG | 0.250328 | 5.1:-4414286 | MS.gene22613:CDS |
| ATCAAAGAAAAGGCGAAATT+CGG | 0.303929 | 5.1:+4414215 | None:intergenic |
| GGGATAATGAAGTTAATATT+AGG | 0.303965 | 5.1:-4414166 | MS.gene22613:CDS |
| ATGACCATGACGGGAATTCC+TGG | 0.376372 | 5.1:+4415959 | None:intergenic |
| ATTAGGCTTGCTTCGTTGAA+TGG | 0.385498 | 5.1:-4414149 | MS.gene22613:CDS |
| AGCTAATATGTATGAGAGTT+GGG | 0.393966 | 5.1:-4414186 | MS.gene22613:CDS |
| GTCAAATGGAACAATATATG+AGG | 0.414403 | 5.1:-4415853 | MS.gene22613:CDS |
| ACCAATGAGGACATCCTCAT+TGG | 0.423740 | 5.1:+4415920 | None:intergenic |
| TCAAAGAAAAGGCGAAATTC+GGG | 0.428198 | 5.1:+4414216 | None:intergenic |
| TGTGATTGAAGTGGTTGGTT+TGG | 0.429533 | 5.1:-4414303 | MS.gene22613:CDS |
| TAGCTAATATGTATGAGAGT+TGG | 0.436592 | 5.1:-4414187 | MS.gene22613:CDS |
| TTTGGATGTTGATTGTGATT+GGG | 0.445463 | 5.1:-4414285 | MS.gene22613:CDS |
| TCCAATGAGGATGTCCTCAT+TGG | 0.446706 | 5.1:-4415921 | MS.gene22613:CDS |
| GCCGCAGGTGGTTTGAATAG+AGG | 0.465747 | 5.1:-4414092 | MS.gene22613:CDS |
| CTCTCAAAACTTGTTCCTGA+TGG | 0.466807 | 5.1:+4415990 | None:intergenic |
| GGAAAGGAAACATGGTCAAA+TGG | 0.487474 | 5.1:-4415867 | MS.gene22613:CDS |
| ACGAGAGAGTTTCAGGATGA+AGG | 0.495334 | 5.1:-4414242 | MS.gene22613:CDS |
| CAGGGTGCCATGACCATGAC+GGG | 0.504704 | 5.1:+4415950 | None:intergenic |
| AGCTACATACATCAAAGAAA+AGG | 0.510428 | 5.1:+4414205 | None:intergenic |
| TTGGGATAAATTGAACTTGA+GGG | 0.511742 | 5.1:-4414267 | MS.gene22613:CDS |
| CCGCAGGTGGTTTGAATAGA+GGG | 0.516266 | 5.1:-4414091 | MS.gene22613:CDS |
| CTCGCCCTAGCTGATTCAAT+CGG | 0.523181 | 5.1:+4414365 | None:intergenic |
| ATGTTTCCTTTCCCTGCGAA+CGG | 0.533624 | 5.1:+4415877 | None:intergenic |
| AGGAATTCCCGTCATGGTCA+TGG | 0.538746 | 5.1:-4415957 | MS.gene22613:CDS |
| GGACGGATGATATATCCATC+AGG | 0.543381 | 5.1:-4416005 | None:intergenic |
| GAGGTTTCTGCAAATTGTGA+TGG | 0.555098 | 5.1:-4414345 | MS.gene22613:CDS |
| GGTGTTGCTCTTAAAGCCGC+AGG | 0.579253 | 5.1:-4414107 | MS.gene22613:CDS |
| GGTATTCGTGATAAGTCTAT+CGG | 0.588128 | 5.1:-4414128 | MS.gene22613:CDS |
| ATTGGGATAAATTGAACTTG+AGG | 0.590241 | 5.1:-4414268 | MS.gene22613:CDS |
| CGATTGAATCAGCTAGGGCG+AGG | 0.591847 | 5.1:-4414364 | MS.gene22613:CDS |
| GTTCGCAGGGAAAGGAAACA+TGG | 0.594776 | 5.1:-4415875 | MS.gene22613:CDS |
| TTCTCCAGGAATTCCCGTCA+TGG | 0.598112 | 5.1:-4415963 | MS.gene22613:CDS |
| GGGATAAATTGAACTTGAGG+GGG | 0.612184 | 5.1:-4414265 | MS.gene22613:CDS |
| GTTGCTCTTAAAGCCGCAGG+TGG | 0.612853 | 5.1:-4414104 | MS.gene22613:CDS |
| TCAAATGGAACAATATATGA+GGG | 0.613208 | 5.1:-4415852 | MS.gene22613:CDS |
| TCAGGGTGCCATGACCATGA+CGG | 0.613527 | 5.1:+4415949 | None:intergenic |
| TGGGATAAATTGAACTTGAG+GGG | 0.616437 | 5.1:-4414266 | MS.gene22613:CDS |
| CGACGATCATGTGATTGAAG+TGG | 0.618288 | 5.1:-4414312 | MS.gene22613:CDS |
| TTTGCCGATTGAATCAGCTA+GGG | 0.619702 | 5.1:-4414369 | MS.gene22613:CDS |
| GATCATGTGATTGAAGTGGT+TGG | 0.630789 | 5.1:-4414308 | MS.gene22613:CDS |
| CCCTCTATTCAAACCACCTG+CGG | 0.635330 | 5.1:+4414091 | None:intergenic |
| GAGGGTAAATTAGCTGACCC+AGG | 0.643222 | 5.1:-4415834 | MS.gene22613:intron |
| CACCCTGACAAAATCCAATG+AGG | 0.657250 | 5.1:-4415934 | MS.gene22613:CDS |
| TACTCTCGAAGTTACCAATG+AGG | 0.675261 | 5.1:+4415907 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCTTATATTAACTTAATT+TGG | + | chr5.1:4414444-4414463 | None:intergenic | 10.0% |
| !! | TTCTTATATTAACTTAATTT+GGG | + | chr5.1:4414443-4414462 | None:intergenic | 10.0% |
| !! | ATTAAACATATAACTTATAC+TGG | + | chr5.1:4414479-4414498 | None:intergenic | 15.0% |
| !!! | AAACTAATGTTTTATAACTT+TGG | + | chr5.1:4415259-4415278 | None:intergenic | 15.0% |
| !!! | AACATTAGTTTTAACAATTT+TGG | - | chr5.1:4415268-4415287 | MS.gene22613:intron | 15.0% |
| !!! | AACTAATGTTTTATAACTTT+GGG | + | chr5.1:4415258-4415277 | None:intergenic | 15.0% |
| !!! | TTTTATCCTTTTTAGTATTA+TGG | - | chr5.1:4414268-4414287 | MS.gene22613:CDS | 15.0% |
| !! | AAAGGATAAAATAATTTACC+TGG | + | chr5.1:4414259-4414278 | None:intergenic | 20.0% |
| !! | AAATATTTCAGTCAGTATTT+AGG | + | chr5.1:4414518-4414537 | None:intergenic | 20.0% |
| !! | AAGGATAAAATAATTTACCT+GGG | + | chr5.1:4414258-4414277 | None:intergenic | 20.0% |
| !! | AATTATTACCTTTCTTTCAA+TGG | - | chr5.1:4414325-4414344 | MS.gene22613:CDS | 20.0% |
| !! | CTTTCATATTAATTATTGAG+TGG | - | chr5.1:4415010-4415029 | MS.gene22613:intron | 20.0% |
| !!! | AAATACTGACTGAAATATTT+CGG | - | chr5.1:4414518-4414537 | MS.gene22613:intron | 20.0% |
| !!! | AATGTAAACATGTTTTATAC+TGG | - | chr5.1:4414552-4414571 | MS.gene22613:intron | 20.0% |
| !!! | ACTAATGTTTTATAACTTTG+GGG | + | chr5.1:4415257-4415276 | None:intergenic | 20.0% |
| !!! | GTTTTTCCATAATACTAAAA+AGG | + | chr5.1:4414277-4414296 | None:intergenic | 20.0% |
| ! | ACTTATGTAGCATATATTCA+TGG | - | chr5.1:4414295-4414314 | MS.gene22613:CDS | 25.0% |
| ! | ATAGTGAGAATAGAGAAAAA+AGG | + | chr5.1:4415199-4415218 | None:intergenic | 25.0% |
| ! | ATATAGAACCATTGAAAGAA+AGG | + | chr5.1:4414336-4414355 | None:intergenic | 25.0% |
| ! | CAAATAGATGGATAATGATA+TGG | - | chr5.1:4414599-4414618 | MS.gene22613:intron | 25.0% |
| ! | GAAGTTTATTTATTATCGAC+TGG | - | chr5.1:4414862-4414881 | MS.gene22613:intron | 25.0% |
| ! | GGGATAATGAAGTTAATATT+AGG | - | chr5.1:4415906-4415925 | MS.gene22613:CDS | 25.0% |
| ! | TCAAATGGAACAATATATGA+GGG | - | chr5.1:4414220-4414239 | MS.gene22613:CDS | 25.0% |
| ! | TTAAGTTATCATGCAATGAA+AGG | + | chr5.1:4414968-4414987 | None:intergenic | 25.0% |
| !! | ACACTTAGTCAAACAATTTT+CGG | + | chr5.1:4414387-4414406 | None:intergenic | 25.0% |
| !! | TTTTGACATAATTGCTCAAA+AGG | + | chr5.1:4415149-4415168 | None:intergenic | 25.0% |
| AATAATGATCTCATGCACTA+AGG | + | chr5.1:4415055-4415074 | None:intergenic | 30.0% | |
| AGCTAATATGTATGAGAGTT+GGG | - | chr5.1:4415886-4415905 | MS.gene22613:CDS | 30.0% | |
| AGCTACATACATCAAAGAAA+AGG | + | chr5.1:4415870-4415889 | None:intergenic | 30.0% | |
| ATCAAAGAAAAGGCGAAATT+CGG | + | chr5.1:4415860-4415879 | None:intergenic | 30.0% | |
| ATTGGGATAAATTGAACTTG+AGG | - | chr5.1:4415804-4415823 | MS.gene22613:intron | 30.0% | |
| GCATTATATGTACGTGTTTA+TGG | - | chr5.1:4414643-4414662 | MS.gene22613:intron | 30.0% | |
| GTATAACTGAGACAAATAGA+TGG | - | chr5.1:4414587-4414606 | MS.gene22613:intron | 30.0% | |
| GTCAAATGGAACAATATATG+AGG | - | chr5.1:4414219-4414238 | MS.gene22613:CDS | 30.0% | |
| TAGCTAATATGTATGAGAGT+TGG | - | chr5.1:4415885-4415904 | MS.gene22613:CDS | 30.0% | |
| TTGGGATAAATTGAACTTGA+GGG | - | chr5.1:4415805-4415824 | MS.gene22613:intron | 30.0% | |
| ! | TTTGGATGTTGATTGTGATT+GGG | - | chr5.1:4415787-4415806 | MS.gene22613:intron | 30.0% |
| ACAATTTCTACACAGTGAAG+TGG | + | chr5.1:4415522-4415541 | None:intergenic | 35.0% | |
| ATTGTAGTGTTCAAGAACCA+GGG | + | chr5.1:4415373-4415392 | None:intergenic | 35.0% | |
| CATAATTGCTCAAAAGGTGA+AGG | + | chr5.1:4415143-4415162 | None:intergenic | 35.0% | |
| GGTATTCGTGATAAGTCTAT+CGG | - | chr5.1:4415944-4415963 | MS.gene22613:CDS | 35.0% | |
| TAAGTGTATTCATGCGTACT+TGG | - | chr5.1:4414400-4414419 | MS.gene22613:intron | 35.0% | |
| TACGATATCTTAACCGTTGT+CGG | - | chr5.1:4415599-4415618 | MS.gene22613:intron | 35.0% | |
| TCAAAGAAAAGGCGAAATTC+GGG | + | chr5.1:4415859-4415878 | None:intergenic | 35.0% | |
| TGGGATAAATTGAACTTGAG+GGG | - | chr5.1:4415806-4415825 | MS.gene22613:intron | 35.0% | |
| ! | ATCCTCATTGGATTTTGTCA+GGG | + | chr5.1:4414143-4414162 | None:intergenic | 35.0% |
| ! | GTTTGGATGTTGATTGTGAT+TGG | - | chr5.1:4415786-4415805 | MS.gene22613:intron | 35.0% |
| ! | TTCAGCTTGTTCAAATGATG+TGG | - | chr5.1:4415642-4415661 | MS.gene22613:intron | 35.0% |
| !! | AAATGTTCTAGAAGATTCGC+TGG | + | chr5.1:4415579-4415598 | None:intergenic | 35.0% |
| !! | GTTCAGTTGTCAGTTGTTTT+TGG | - | chr5.1:4414766-4414785 | MS.gene22613:intron | 35.0% |
| CTCATCTTGTTGAGTGTTAG+TGG | - | chr5.1:4414903-4414922 | MS.gene22613:intron | 40.0% | |
| GAGGTTTCTGCAAATTGTGA+TGG | - | chr5.1:4415727-4415746 | MS.gene22613:intron | 40.0% | |
| GATCATGTGATTGAAGTGGT+TGG | - | chr5.1:4415764-4415783 | MS.gene22613:intron | 40.0% | |
| GATGTAAAACGTCTACACAG+AGG | + | chr5.1:4414810-4414829 | None:intergenic | 40.0% | |
| GATTGTAGTGTTCAAGAACC+AGG | + | chr5.1:4415374-4415393 | None:intergenic | 40.0% | |
| GGAAAGGAAACATGGTCAAA+TGG | - | chr5.1:4414205-4414224 | MS.gene22613:CDS | 40.0% | |
| GGGATAAATTGAACTTGAGG+GGG | - | chr5.1:4415807-4415826 | MS.gene22613:intron | 40.0% | |
| TACTCTCGAAGTTACCAATG+AGG | + | chr5.1:4414168-4414187 | None:intergenic | 40.0% | |
| TTGCAGAATGATACCGACAA+CGG | + | chr5.1:4415615-4415634 | None:intergenic | 40.0% | |
| ! | AGTAATCTTTTCCGTTCGCA+GGG | - | chr5.1:4414184-4414203 | MS.gene22613:CDS | 40.0% |
| ! | ATTAGGCTTGCTTCGTTGAA+TGG | - | chr5.1:4415923-4415942 | MS.gene22613:CDS | 40.0% |
| ! | CATCCTCATTGGATTTTGTC+AGG | + | chr5.1:4414144-4414163 | None:intergenic | 40.0% |
| ! | CTCTCAAAACTTGTTCCTGA+TGG | + | chr5.1:4414085-4414104 | None:intergenic | 40.0% |
| ! | GTCAAACAATTTTCGGCACA+AGG | + | chr5.1:4414380-4414399 | None:intergenic | 40.0% |
| ! | TGTGATTGAAGTGGTTGGTT+TGG | - | chr5.1:4415769-4415788 | MS.gene22613:intron | 40.0% |
| ! | TTTGCCGATTGAATCAGCTA+GGG | - | chr5.1:4415703-4415722 | MS.gene22613:intron | 40.0% |
| !! | TTTTGCCGATTGAATCAGCT+AGG | - | chr5.1:4415702-4415721 | MS.gene22613:intron | 40.0% |
| !!! | GTTTTGAGAGTGAATTCTCC+AGG | - | chr5.1:4414095-4414114 | MS.gene22613:CDS | 40.0% |
| AAGAACCAGGGAGAGAATAG+AGG | + | chr5.1:4415361-4415380 | None:intergenic | 45.0% | |
| AAGGTGATCTCAGTTGCTAC+AGG | - | chr5.1:4414727-4414746 | MS.gene22613:intron | 45.0% | |
| ACCAATGAGGACATCCTCAT+TGG | + | chr5.1:4414155-4414174 | None:intergenic | 45.0% | |
| ACGAGAGAGTTTCAGGATGA+AGG | - | chr5.1:4415830-4415849 | MS.gene22613:intron | 45.0% | |
| ACGTCTACACAGAGGAATAC+AGG | + | chr5.1:4414802-4414821 | None:intergenic | 45.0% | |
| ATGTTTCCTTTCCCTGCGAA+CGG | + | chr5.1:4414198-4414217 | None:intergenic | 45.0% | |
| CACCCTGACAAAATCCAATG+AGG | - | chr5.1:4414138-4414157 | MS.gene22613:CDS | 45.0% | |
| CGACGATCATGTGATTGAAG+TGG | - | chr5.1:4415760-4415779 | MS.gene22613:intron | 45.0% | |
| TCCAATGAGGATGTCCTCAT+TGG | - | chr5.1:4414151-4414170 | MS.gene22613:CDS | 45.0% | |
| ! | GAGTAATCTTTTCCGTTCGC+AGG | - | chr5.1:4414183-4414202 | MS.gene22613:CDS | 45.0% |
| AAGTGGCAAACAGACGATGG+TGG | + | chr5.1:4415505-4415524 | None:intergenic | 50.0% | |
| AGGAATTCCCGTCATGGTCA+TGG | - | chr5.1:4414115-4414134 | MS.gene22613:CDS | 50.0% | |
| AGGGCTTTCGATGAAGGAAG+TGG | + | chr5.1:4415406-4415425 | None:intergenic | 50.0% | |
| CCCTCTATTCAAACCACCTG+CGG | + | chr5.1:4415984-4416003 | None:intergenic | 50.0% | |
| CCGCAGGTGGTTTGAATAGA+GGG | - | chr5.1:4415981-4416000 | MS.gene22613:CDS | 50.0% | |
| GAGATCCTGACGACGTGAAA+AGG | - | chr5.1:4414708-4414727 | MS.gene22613:intron | 50.0% | |
| GAGGGTAAATTAGCTGACCC+AGG | - | chr5.1:4414238-4414257 | MS.gene22613:CDS | 50.0% | |
| GCTACAGGAGATGTAGAGCT+AGG | - | chr5.1:4414742-4414761 | MS.gene22613:intron | 50.0% | |
| GGGCTTTCGATGAAGGAAGT+GGG | + | chr5.1:4415405-4415424 | None:intergenic | 50.0% | |
| GTCAAGAGGGCTTTCGATGA+AGG | + | chr5.1:4415412-4415431 | None:intergenic | 50.0% | |
| GTGAAGTGGCAAACAGACGA+TGG | + | chr5.1:4415508-4415527 | None:intergenic | 50.0% | |
| GTTCGCAGGGAAAGGAAACA+TGG | - | chr5.1:4414197-4414216 | MS.gene22613:CDS | 50.0% | |
| TTCTCCAGGAATTCCCGTCA+TGG | - | chr5.1:4414109-4414128 | MS.gene22613:CDS | 50.0% | |
| TTGTGCCTCTATTCTCTCCC+TGG | - | chr5.1:4415353-4415372 | MS.gene22613:intron | 50.0% | |
| ! | AGATTCGCTGGTATCGAGAC+TGG | + | chr5.1:4415567-4415586 | None:intergenic | 50.0% |
| ! | ATGACCATGACGGGAATTCC+TGG | + | chr5.1:4414116-4414135 | None:intergenic | 50.0% |
| ! | CTCGCCCTAGCTGATTCAAT+CGG | + | chr5.1:4415710-4415729 | None:intergenic | 50.0% |
| ! | GACGATGGTGGCATGATCTT+CGG | + | chr5.1:4415493-4415512 | None:intergenic | 50.0% |
| ! | GATCACCTTTTCACGTCGTC+AGG | + | chr5.1:4414716-4414735 | None:intergenic | 50.0% |
| ! | TCTTTTCCGTTCGCAGGGAA+AGG | - | chr5.1:4414189-4414208 | MS.gene22613:CDS | 50.0% |
| ACGGAGTTGAGGACGTCAAG+AGG | + | chr5.1:4415426-4415445 | None:intergenic | 55.0% | |
| CGATTGAATCAGCTAGGGCG+AGG | - | chr5.1:4415708-4415727 | MS.gene22613:intron | 55.0% | |
| CGGAGTTGAGGACGTCAAGA+GGG | + | chr5.1:4415425-4415444 | None:intergenic | 55.0% | |
| GATGTTGTCGATGGAGGTGG+TGG | + | chr5.1:4415463-4415482 | None:intergenic | 55.0% | |
| GCCGCAGGTGGTTTGAATAG+AGG | - | chr5.1:4415980-4415999 | MS.gene22613:CDS | 55.0% | |
| GGTGATGTTGTCGATGGAGG+TGG | + | chr5.1:4415466-4415485 | None:intergenic | 55.0% | |
| GTTGCTCTTAAAGCCGCAGG+TGG | - | chr5.1:4415968-4415987 | MS.gene22613:CDS | 55.0% | |
| TTCTGGCGTCAACGGAGTTG+AGG | + | chr5.1:4415437-4415456 | None:intergenic | 55.0% | |
| ! | GATGGTGGCATGATCTTCGG+CGG | + | chr5.1:4415490-4415509 | None:intergenic | 55.0% |
| ! | GGTGGTGATGTTGTCGATGG+AGG | + | chr5.1:4415469-4415488 | None:intergenic | 55.0% |
| ! | TCAGGGTGCCATGACCATGA+CGG | + | chr5.1:4414126-4414145 | None:intergenic | 55.0% |
| !! | GGTGTTGCTCTTAAAGCCGC+AGG | - | chr5.1:4415965-4415984 | MS.gene22613:CDS | 55.0% |
| ACACGACGACGCGCAATGGT+AGG | + | chr5.1:4415328-4415347 | None:intergenic | 60.0% | |
| GAGGGGGACGAGAGAGTTTC+AGG | - | chr5.1:4415823-4415842 | MS.gene22613:intron | 60.0% | |
| GTGAACACGACGACGCGCAA+TGG | + | chr5.1:4415332-4415351 | None:intergenic | 60.0% | |
| ! | CAGGGTGCCATGACCATGAC+GGG | + | chr5.1:4414125-4414144 | None:intergenic | 60.0% |
| ! | GATGGAGGTGGTGGCAGTTC+TGG | + | chr5.1:4415454-4415473 | None:intergenic | 60.0% |
| ! | GGCGGTGGTGATGTTGTCGA+TGG | + | chr5.1:4415472-4415491 | None:intergenic | 60.0% |
| ! | GGTGGCAGTTCTGGCGTCAA+CGG | + | chr5.1:4415445-4415464 | None:intergenic | 60.0% |
| GGTGGCATGATCTTCGGCGG+TGG | + | chr5.1:4415487-4415506 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 4414073 | 4416021 | 4414073 | ID=MS.gene22613 |
| chr5.1 | mRNA | 4414073 | 4416021 | 4414073 | ID=MS.gene22613.t1;Parent=MS.gene22613 |
| chr5.1 | exon | 4415835 | 4416021 | 4415835 | ID=MS.gene22613.t1.exon1;Parent=MS.gene22613.t1 |
| chr5.1 | CDS | 4415835 | 4416021 | 4415835 | ID=cds.MS.gene22613.t1;Parent=MS.gene22613.t1 |
| chr5.1 | exon | 4414073 | 4414395 | 4414073 | ID=MS.gene22613.t1.exon2;Parent=MS.gene22613.t1 |
| chr5.1 | CDS | 4414073 | 4414395 | 4414073 | ID=cds.MS.gene22613.t1;Parent=MS.gene22613.t1 |
| Gene Sequence |
| Protein sequence |
