Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22662.t1 | XP_013459798.1 | 98.4 | 188 | 3 | 0 | 1 | 188 | 1 | 188 | 1.80E-95 | 358.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22662.t1 | Q94JQ4 | 66.7 | 189 | 57 | 3 | 3 | 188 | 2 | 187 | 2.7e-60 | 233.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22662.t1 | I3SK73 | 98.4 | 188 | 3 | 0 | 1 | 188 | 1 | 188 | 1.3e-95 | 358.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059338 | MS.gene22662 | 0.800707 | 1.27E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22662.t1 | MTR_3g051740 | 98.404 | 188 | 3 | 0 | 1 | 188 | 1 | 188 | 3.42e-137 | 380 |
| MS.gene22662.t1 | MTR_5g092740 | 73.298 | 191 | 48 | 3 | 1 | 188 | 1 | 191 | 5.25e-96 | 276 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22662.t1 | AT3G20390 | 65.079 | 189 | 60 | 3 | 3 | 188 | 2 | 187 | 4.04e-81 | 239 |
| MS.gene22662.t1 | AT3G20390 | 65.079 | 189 | 60 | 3 | 3 | 188 | 70 | 255 | 3.93e-80 | 239 |
Find 53 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCACCGGCGCGCTTCA+TGG | 0.245173 | 3.3:-43223741 | MS.gene22662:CDS |
| GCTTCATGGGCCGCCGGAAT+CGG | 0.288598 | 3.3:-43223727 | MS.gene22662:CDS |
| CTATTTGTCTCAGGTGTCCT+TGG | 0.335818 | 3.3:-43222336 | MS.gene22662:CDS |
| TTCCAGGTTGGCTGACTTGA+AGG | 0.345750 | 3.3:-43221582 | MS.gene22662:intron |
| TATGCACTCAATTTCAATCT+TGG | 0.362374 | 3.3:+43220890 | None:intergenic |
| TGGAGAACGGCGGCGTTGAT+TGG | 0.378595 | 3.3:+43223757 | None:intergenic |
| AACGGAGACTCCGCCGATTC+CGG | 0.378739 | 3.3:+43223714 | None:intergenic |
| GAAAAGGCCCCAGCAGCATT+AGG | 0.400404 | 3.3:-43222393 | MS.gene22662:CDS |
| GCTTTGATTGCTTGAGAATA+CGG | 0.405845 | 3.3:+43222369 | None:intergenic |
| TCTCCACCGGCGCGCTTCAT+GGG | 0.434032 | 3.3:-43223740 | MS.gene22662:CDS |
| ATCGGCGGAGTCTCCGTTGC+CGG | 0.444540 | 3.3:-43223709 | MS.gene22662:CDS |
| CTTAACAACTGATGCATAGC+TGG | 0.447171 | 3.3:+43221696 | None:intergenic |
| TGAGACAAATAGAAGGTTGT+TGG | 0.447747 | 3.3:+43222347 | None:intergenic |
| TGAGCGCAACATGGCAGTGC+CGG | 0.462430 | 3.3:+43223690 | None:intergenic |
| GAATACGGTCCTAATGCTGC+TGG | 0.463844 | 3.3:+43222384 | None:intergenic |
| AACAACCTTCTATTTGTCTC+AGG | 0.469075 | 3.3:-43222345 | MS.gene22662:CDS |
| ACTTGATACGTCGCACGAGC+TGG | 0.469228 | 3.3:+43220933 | None:intergenic |
| GCACGAGCTGGGGCAGGTGA+AGG | 0.482738 | 3.3:+43220945 | None:intergenic |
| CTTGATACGTCGCACGAGCT+GGG | 0.495903 | 3.3:+43220934 | None:intergenic |
| CGGCCCATGAAGCGCGCCGG+TGG | 0.502790 | 3.3:+43223737 | None:intergenic |
| TCAACGCCGCCGTTCTCCAC+CGG | 0.508384 | 3.3:-43223753 | MS.gene22662:CDS |
| AGAACGGCGGCGTTGATTGG+TGG | 0.520088 | 3.3:+43223760 | None:intergenic |
| CGGCGCGCTTCATGGGCCGC+CGG | 0.523403 | 3.3:-43223733 | MS.gene22662:CDS |
| TACGTCGCACGAGCTGGGGC+AGG | 0.534632 | 3.3:+43220939 | None:intergenic |
| CAACATGGCAGTGCCGGCAA+CGG | 0.534933 | 3.3:+43223696 | None:intergenic |
| TGTTGAAGATCAGACTGAGC+AGG | 0.545352 | 3.3:-43222163 | MS.gene22662:intron |
| CGGCGGCCCATGAAGCGCGC+CGG | 0.548624 | 3.3:+43223734 | None:intergenic |
| AATACGGTCCTAATGCTGCT+GGG | 0.551619 | 3.3:+43222385 | None:intergenic |
| GGACACCTGAGACAAATAGA+AGG | 0.553587 | 3.3:+43222340 | None:intergenic |
| TCATGGGCCGCCGGAATCGG+CGG | 0.556526 | 3.3:-43223724 | MS.gene22662:CDS |
| TCAAGTAGCTGCCTTGCCGT+TGG | 0.560196 | 3.3:-43220916 | MS.gene22662:CDS |
| GGAAGCTGTTCAGACAGAAA+AGG | 0.561997 | 3.3:-43222409 | MS.gene22662:CDS |
| TGAAGCGCGCCGGTGGAGAA+CGG | 0.562145 | 3.3:+43223744 | None:intergenic |
| ATTTCAATCTTGGCATCCAA+CGG | 0.567118 | 3.3:+43220900 | None:intergenic |
| GGAAAGGCTTAAGCAAAGGA+AGG | 0.586489 | 3.3:+43223645 | None:intergenic |
| GGAGACTCCGCCGATTCCGG+CGG | 0.590150 | 3.3:+43223717 | None:intergenic |
| CAGTGGAAAGGCTTAAGCAA+AGG | 0.596253 | 3.3:+43223641 | None:intergenic |
| CGGCGTTGATTGGTGGAATG+TGG | 0.604191 | 3.3:+43223767 | None:intergenic |
| TGGCGTCATGGTGTGCAGCA+AGG | 0.608058 | 3.3:-43223795 | MS.gene22662:CDS |
| TGTCCTTGGTCTTGTTCCCG+AGG | 0.614992 | 3.3:-43222322 | MS.gene22662:intron |
| GTGAGAAAGAAATGGCGTCA+TGG | 0.617536 | 3.3:-43223807 | None:intergenic |
| GTTGATTGGTGGAATGTGGA+AGG | 0.619041 | 3.3:+43223771 | None:intergenic |
| ATACGGTCCTAATGCTGCTG+GGG | 0.621636 | 3.3:+43222386 | None:intergenic |
| GCAGACAGGGAAGTTTGTCT+CGG | 0.622133 | 3.3:-43222190 | MS.gene22662:intron |
| AATCTTGGCATCCAACGGCA+AGG | 0.623839 | 3.3:+43220905 | None:intergenic |
| TGGGAACTTACGGGTATCAG+TGG | 0.629631 | 3.3:+43223624 | None:intergenic |
| TTGATACGTCGCACGAGCTG+GGG | 0.630943 | 3.3:+43220935 | None:intergenic |
| GAAAGGCTTAAGCAAAGGAA+GGG | 0.642611 | 3.3:+43223646 | None:intergenic |
| AGAAGAAGATGAGCGCAACA+TGG | 0.649681 | 3.3:+43223681 | None:intergenic |
| AGCGCGCCGGTGGAGAACGG+CGG | 0.660633 | 3.3:+43223747 | None:intergenic |
| ACTTACGGGTATCAGTGGAA+AGG | 0.665039 | 3.3:+43223629 | None:intergenic |
| GGGGAGATCCTGAAATCTGG+GGG | 0.679110 | 3.3:-43221721 | MS.gene22662:CDS |
| AAACCTCGGGAACAAGACCA+AGG | 0.710925 | 3.3:+43222319 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTTCAATCAAAATAAT+TGG | - | chr3.3:43223281-43223300 | MS.gene22662:intron | 10.0% |
| !! | ATTGAAATAATTAACAATAA+AGG | + | chr3.3:43223272-43223291 | None:intergenic | 10.0% |
| !! | TTGAAATAATTAACAATAAA+GGG | + | chr3.3:43223271-43223290 | None:intergenic | 10.0% |
| !! | AATGTATATAAGAAATTCAT+TGG | + | chr3.3:43223371-43223390 | None:intergenic | 15.0% |
| !! | ATACTTAAACAAAAAATTTG+GGG | - | chr3.3:43221599-43221618 | MS.gene22662:intron | 15.0% |
| !! | CATACTTAAACAAAAAATTT+GGG | - | chr3.3:43221598-43221617 | MS.gene22662:intron | 15.0% |
| !! | TCATACTTAAACAAAAAATT+TGG | - | chr3.3:43221597-43221616 | MS.gene22662:intron | 15.0% |
| !!! | AAAGTTGATATGATTTATAA+TGG | - | chr3.3:43222766-43222785 | MS.gene22662:intron | 15.0% |
| !!! | ATTTTTATATGAATTAGCTT+TGG | - | chr3.3:43221517-43221536 | MS.gene22662:intron | 15.0% |
| !!! | TAAACAATACTTTTTCAAAT+TGG | - | chr3.3:43222109-43222128 | MS.gene22662:intron | 15.0% |
| !!! | TCATATTCTGTAATTTTAAA+AGG | + | chr3.3:43223311-43223330 | None:intergenic | 15.0% |
| !! | AAAATGTTGCTAATGTATAA+TGG | - | chr3.3:43221803-43221822 | MS.gene22662:intron | 20.0% |
| !! | AAAGAATGTAAACAATTTCA+AGG | + | chr3.3:43223181-43223200 | None:intergenic | 20.0% |
| !! | AAGTTTATATTTGTATGAAG+TGG | - | chr3.3:43221764-43221783 | MS.gene22662:intron | 20.0% |
| !! | ATATAAATATGCTGATAGAT+TGG | + | chr3.3:43222395-43222414 | None:intergenic | 20.0% |
| !! | CCAGTAATAATTTGAAAAAA+TGG | + | chr3.3:43221997-43222016 | None:intergenic | 20.0% |
| !! | GTATACGTTATTTATGTAAA+AGG | - | chr3.3:43223537-43223556 | MS.gene22662:intron | 20.0% |
| !! | TAACAATCATTCAAAGATTT+AGG | + | chr3.3:43222691-43222710 | None:intergenic | 20.0% |
| !! | TTTAAACAATTACATATTGC+AGG | - | chr3.3:43222916-43222935 | MS.gene22662:intron | 20.0% |
| !!! | ATTCTGTAATTTTAAAAGGA+TGG | + | chr3.3:43223307-43223326 | None:intergenic | 20.0% |
| !!! | CCATTTTTTCAAATTATTAC+TGG | - | chr3.3:43221994-43222013 | MS.gene22662:intron | 20.0% |
| !!! | GTAAAAGATTTTCAATCTAA+AGG | + | chr3.3:43223470-43223489 | None:intergenic | 20.0% |
| !!! | TTGTTTTGTCAATTTAGTAT+AGG | - | chr3.3:43221852-43221871 | MS.gene22662:intron | 20.0% |
| ! | AAAACAAATCACAATTGTGA+AGG | + | chr3.3:43221839-43221858 | None:intergenic | 25.0% |
| ! | AACACTAAATTATCAAACCT+CGG | + | chr3.3:43222372-43222391 | None:intergenic | 25.0% |
| ! | AACATGTCAAAACAATTCTA+CGG | + | chr3.3:43221246-43221265 | None:intergenic | 25.0% |
| ! | AAGAATCCTTCAAACAAAAA+AGG | + | chr3.3:43221707-43221726 | None:intergenic | 25.0% |
| ! | ACAAGAAATCAGGTAATATA+TGG | + | chr3.3:43223432-43223451 | None:intergenic | 25.0% |
| ! | CTAATGTATAATGGTTATTG+CGG | - | chr3.3:43221812-43221831 | MS.gene22662:intron | 25.0% |
| ! | CTTTGATTGTCCAAAATTAT+GGG | - | chr3.3:43222633-43222652 | MS.gene22662:intron | 25.0% |
| ! | GATAACAAAATGCTTATAAG+TGG | + | chr3.3:43221453-43221472 | None:intergenic | 25.0% |
| ! | TACTTCTAATCATTTACTTG+TGG | - | chr3.3:43223686-43223705 | MS.gene22662:CDS | 25.0% |
| ! | TATTTGTTCTTTCCTTAGTT+TGG | - | chr3.3:43223020-43223039 | MS.gene22662:intron | 25.0% |
| ! | TTGTTTAAGTATGAACTTGT+TGG | + | chr3.3:43221591-43221610 | None:intergenic | 25.0% |
| !! | AAGATTTTCGTCTATTTATG+TGG | - | chr3.3:43223659-43223678 | MS.gene22662:CDS | 25.0% |
| !! | AGATTTTCGTCTATTTATGT+GGG | - | chr3.3:43223660-43223679 | MS.gene22662:CDS | 25.0% |
| !! | TATGCTAAATGTAAGTTTTG+TGG | - | chr3.3:43223138-43223157 | MS.gene22662:intron | 25.0% |
| !!! | ACAAGCAACATTTTTTGTAA+TGG | - | chr3.3:43221637-43221656 | MS.gene22662:intron | 25.0% |
| !!! | ATCACTTTCTGATTGATTTT+AGG | - | chr3.3:43222233-43222252 | MS.gene22662:intron | 25.0% |
| !!! | TCACTTTCTGATTGATTTTA+GGG | - | chr3.3:43222234-43222253 | MS.gene22662:intron | 25.0% |
| AAAGTGAAGTGATTTATGTC+TGG | + | chr3.3:43221401-43221420 | None:intergenic | 30.0% | |
| AAATTGGTATAGAGCTACAA+AGG | - | chr3.3:43222125-43222144 | MS.gene22662:intron | 30.0% | |
| AATCATTAAGTGCACCATTA+TGG | + | chr3.3:43222883-43222902 | None:intergenic | 30.0% | |
| ACACTAAATTATCAAACCTC+GGG | + | chr3.3:43222371-43222390 | None:intergenic | 30.0% | |
| AGAGAAGAAAGTGAAATGAT+GGG | + | chr3.3:43221072-43221091 | None:intergenic | 30.0% | |
| ATCACTGTGTTTAAATTGAC+TGG | - | chr3.3:43221470-43221489 | MS.gene22662:intron | 30.0% | |
| ATCTAATCTTAGTGCATGTT+TGG | - | chr3.3:43221191-43221210 | MS.gene22662:intron | 30.0% | |
| CCAAATGGTATATTAATCAG+TGG | + | chr3.3:43221147-43221166 | None:intergenic | 30.0% | |
| GATTGAAGATTAATCTTCGA+AGG | - | chr3.3:43223500-43223519 | MS.gene22662:intron | 30.0% | |
| GCTTTGATTGTCCAAAATTA+TGG | - | chr3.3:43222632-43222651 | MS.gene22662:intron | 30.0% | |
| TAACATCATTCATTTCTTCC+AGG | - | chr3.3:43223076-43223095 | MS.gene22662:intron | 30.0% | |
| TAGCTATAGTACAAGAAATC+AGG | + | chr3.3:43223442-43223461 | None:intergenic | 30.0% | |
| TATGCACTCAATTTCAATCT+TGG | + | chr3.3:43223787-43223806 | None:intergenic | 30.0% | |
| TCAAATACAAAGCCAAACTA+AGG | + | chr3.3:43223035-43223054 | None:intergenic | 30.0% | |
| TCATTTACTTGTGGTTTGAA+TGG | - | chr3.3:43223695-43223714 | MS.gene22662:CDS | 30.0% | |
| TTGCGCTGTAAAAGTTAATT+CGG | - | chr3.3:43223394-43223413 | MS.gene22662:intron | 30.0% | |
| TTTGACATGTTCAATTGCTT+CGG | - | chr3.3:43221255-43221274 | MS.gene22662:intron | 30.0% | |
| ! | AACATTTTCACTGCAGTTAA+AGG | + | chr3.3:43221791-43221810 | None:intergenic | 30.0% |
| ! | AGAACAAAACACTGATTACT+AGG | + | chr3.3:43222459-43222478 | None:intergenic | 30.0% |
| ! | AGTTTTGCACTAGGAAATTT+TGG | - | chr3.3:43221738-43221757 | MS.gene22662:CDS | 30.0% |
| ! | CAATTCTACGGAATCAATTT+TGG | + | chr3.3:43221234-43221253 | None:intergenic | 30.0% |
| ! | CCACTGATTAATATACCATT+TGG | - | chr3.3:43221144-43221163 | MS.gene22662:intron | 30.0% |
| ! | TAACATTTTCACAGACCAAA+TGG | + | chr3.3:43221162-43221181 | None:intergenic | 30.0% |
| ! | TACATGAAATTCTGAGAAAG+TGG | + | chr3.3:43221097-43221116 | None:intergenic | 30.0% |
| !! | ATTGATTTTAGGGATCAACA+AGG | - | chr3.3:43222244-43222263 | MS.gene22662:intron | 30.0% |
| !! | TGCATGTTTGGTTTCAATTT+TGG | - | chr3.3:43221203-43221222 | MS.gene22662:intron | 30.0% |
| !! | TTGGTGTTGTATTTCCATAA+TGG | - | chr3.3:43222866-43222885 | MS.gene22662:intron | 30.0% |
| !! | TTTCAACCTAAAGTGTTGAT+CGG | + | chr3.3:43221916-43221935 | None:intergenic | 30.0% |
| !!! | TATGGACCTTTTTTGTTTGA+AGG | - | chr3.3:43221698-43221717 | MS.gene22662:CDS | 30.0% |
| AAAACTCTCAATAGAATGCC+TGG | - | chr3.3:43222835-43222854 | MS.gene22662:intron | 35.0% | |
| AACAACCTTCTATTTGTCTC+AGG | - | chr3.3:43222329-43222348 | MS.gene22662:CDS | 35.0% | |
| ATAGCCTTTCATGTTGTATG+TGG | - | chr3.3:43222554-43222573 | MS.gene22662:intron | 35.0% | |
| ATCATTCATTTCTTCCAGGT+TGG | - | chr3.3:43223080-43223099 | MS.gene22662:intron | 35.0% | |
| ATGGAAATACAACACCAAGA+CGG | + | chr3.3:43222864-43222883 | None:intergenic | 35.0% | |
| ATTCCCACATACAACATGAA+AGG | + | chr3.3:43222561-43222580 | None:intergenic | 35.0% | |
| ATTGCAGGTTCTCAAAAACA+TGG | - | chr3.3:43222931-43222950 | MS.gene22662:intron | 35.0% | |
| ATTTCAATCTTGGCATCCAA+CGG | + | chr3.3:43223777-43223796 | None:intergenic | 35.0% | |
| GAGAGAAGAAAGTGAAATGA+TGG | + | chr3.3:43221073-43221092 | None:intergenic | 35.0% | |
| GCTTTGATTGCTTGAGAATA+CGG | + | chr3.3:43222308-43222327 | None:intergenic | 35.0% | |
| TACCTTGTCATCTTTCACTT+TGG | - | chr3.3:43222595-43222614 | MS.gene22662:intron | 35.0% | |
| TAGCCTTTCATGTTGTATGT+GGG | - | chr3.3:43222555-43222574 | MS.gene22662:intron | 35.0% | |
| TCTCATTGATGTACAATGCA+GGG | - | chr3.3:43221672-43221691 | MS.gene22662:intron | 35.0% | |
| TGAGACAAATAGAAGGTTGT+TGG | + | chr3.3:43222330-43222349 | None:intergenic | 35.0% | |
| TTCCTAGTGCAAAACTAGAT+AGG | + | chr3.3:43221734-43221753 | None:intergenic | 35.0% | |
| TTCTCATTGATGTACAATGC+AGG | - | chr3.3:43221671-43221690 | MS.gene22662:intron | 35.0% | |
| TTGCAGGTTCTCAAAAACAT+GGG | - | chr3.3:43222932-43222951 | MS.gene22662:intron | 35.0% | |
| TTTGTTCTCTAATGCAGACA+GGG | - | chr3.3:43222471-43222490 | MS.gene22662:intron | 35.0% | |
| ! | AGTGAAATGATGGGAACTTA+CGG | + | chr3.3:43221063-43221082 | None:intergenic | 35.0% |
| ! | ATGTACAATGCAGGGTTTTA+TGG | - | chr3.3:43221680-43221699 | MS.gene22662:intron | 35.0% |
| ! | GTATCTCAAGCCCATAATTT+TGG | + | chr3.3:43222646-43222665 | None:intergenic | 35.0% |
| ! | TTTTGTTCTCTAATGCAGAC+AGG | - | chr3.3:43222470-43222489 | MS.gene22662:intron | 35.0% |
| !! | AGTTTGGCTTTGTATTTGAG+TGG | - | chr3.3:43223036-43223055 | MS.gene22662:intron | 35.0% |
| !!! | TTCCTATCTAGTTTTGCACT+AGG | - | chr3.3:43221729-43221748 | MS.gene22662:CDS | 35.0% |
| ACGTATCATTGTCGTGTCTT+TGG | - | chr3.3:43222022-43222041 | MS.gene22662:intron | 40.0% | |
| ACTTAGCACATTCAGAAAGC+TGG | + | chr3.3:43223630-43223649 | None:intergenic | 40.0% | |
| AGCCAAAGTGAAAGATGACA+AGG | + | chr3.3:43222600-43222619 | None:intergenic | 40.0% | |
| CTACAAAGGAAGAGAGACAT+TGG | - | chr3.3:43222139-43222158 | MS.gene22662:intron | 40.0% | |
| CTTAACAACTGATGCATAGC+TGG | + | chr3.3:43222981-43223000 | None:intergenic | 40.0% | |
| GAAAGGCTTAAGCAAAGGAA+GGG | + | chr3.3:43221031-43221050 | None:intergenic | 40.0% | |
| GGCTTGAGATACTGTTTCAT+TGG | - | chr3.3:43222654-43222673 | MS.gene22662:intron | 40.0% | |
| GTGCAATTGTGCATTTATGC+TGG | - | chr3.3:43222419-43222438 | MS.gene22662:CDS | 40.0% | |
| TGCAGGTTCTCAAAAACATG+GGG | - | chr3.3:43222933-43222952 | MS.gene22662:intron | 40.0% | |
| ! | GTGAAATGATGGGAACTTAC+GGG | + | chr3.3:43221062-43221081 | None:intergenic | 40.0% |
| !! | CTTTAGGTTGAAAGCATGTC+TGG | - | chr3.3:43221923-43221942 | MS.gene22662:intron | 40.0% |
| !! | TTGGCTTTGTATTTGAGTGG+TGG | - | chr3.3:43223039-43223058 | MS.gene22662:intron | 40.0% |
| AATACGGTCCTAATGCTGCT+GGG | + | chr3.3:43222292-43222311 | None:intergenic | 45.0% | |
| ACTTACGGGTATCAGTGGAA+AGG | + | chr3.3:43221048-43221067 | None:intergenic | 45.0% | |
| AGAAGAAGATGAGCGCAACA+TGG | + | chr3.3:43220996-43221015 | None:intergenic | 45.0% | |
| CAGTGGAAAGGCTTAAGCAA+AGG | + | chr3.3:43221036-43221055 | None:intergenic | 45.0% | |
| CTATTTGTCTCAGGTGTCCT+TGG | - | chr3.3:43222338-43222357 | MS.gene22662:CDS | 45.0% | |
| GCAGGTTCTCAAAAACATGG+GGG | - | chr3.3:43222934-43222953 | MS.gene22662:intron | 45.0% | |
| GGAAAGGCTTAAGCAAAGGA+AGG | + | chr3.3:43221032-43221051 | None:intergenic | 45.0% | |
| GGAAGCTGTTCAGACAGAAA+AGG | - | chr3.3:43222265-43222284 | MS.gene22662:intron | 45.0% | |
| GGACACCTGAGACAAATAGA+AGG | + | chr3.3:43222337-43222356 | None:intergenic | 45.0% | |
| GTTGATTGGTGGAATGTGGA+AGG | + | chr3.3:43220906-43220925 | None:intergenic | 45.0% | |
| TGCACATGAACACCTGCAAA+AGG | + | chr3.3:43222073-43222092 | None:intergenic | 45.0% | |
| TGGCTATGTCAATGCTCCAT+AGG | - | chr3.3:43222042-43222061 | MS.gene22662:intron | 45.0% | |
| TGTTGAAGATCAGACTGAGC+AGG | - | chr3.3:43222511-43222530 | MS.gene22662:intron | 45.0% | |
| ! | GTGTTGATCGGTGCAACATA+GGG | + | chr3.3:43221904-43221923 | None:intergenic | 45.0% |
| ! | GTTGCACCGATCAACACTTT+AGG | - | chr3.3:43221907-43221926 | MS.gene22662:intron | 45.0% |
| !! | AGTGTTGATCGGTGCAACAT+AGG | + | chr3.3:43221905-43221924 | None:intergenic | 45.0% |
| AAACCTCGGGAACAAGACCA+AGG | + | chr3.3:43222358-43222377 | None:intergenic | 50.0% | |
| AATCTTGGCATCCAACGGCA+AGG | + | chr3.3:43223772-43223791 | None:intergenic | 50.0% | |
| ACAACACCAAGACGGTTACC+AGG | + | chr3.3:43222856-43222875 | None:intergenic | 50.0% | |
| AGAATGCCTGGTAACCGTCT+TGG | - | chr3.3:43222847-43222866 | MS.gene22662:intron | 50.0% | |
| ATACGGTCCTAATGCTGCTG+GGG | + | chr3.3:43222291-43222310 | None:intergenic | 50.0% | |
| ATGGGGGAGATCCTGAAATC+TGG | - | chr3.3:43222950-43222969 | MS.gene22662:intron | 50.0% | |
| CCTGCAAAAGGTGAGTCCTA+TGG | + | chr3.3:43222061-43222080 | None:intergenic | 50.0% | |
| GAATACGGTCCTAATGCTGC+TGG | + | chr3.3:43222293-43222312 | None:intergenic | 50.0% | |
| GCAGACAGGGAAGTTTGTCT+CGG | - | chr3.3:43222484-43222503 | MS.gene22662:intron | 50.0% | |
| TGATATGACGCTGACACACG+TGG | - | chr3.3:43221956-43221975 | MS.gene22662:intron | 50.0% | |
| TGGGAACTTACGGGTATCAG+TGG | + | chr3.3:43221053-43221072 | None:intergenic | 50.0% | |
| TGGGGGAGATCCTGAAATCT+GGG | - | chr3.3:43222951-43222970 | MS.gene22662:intron | 50.0% | |
| ! | CCATAGGACTCACCTTTTGC+AGG | - | chr3.3:43222058-43222077 | MS.gene22662:intron | 50.0% |
| !! | TTCCAGGTTGGCTGACTTGA+AGG | - | chr3.3:43223092-43223111 | MS.gene22662:intron | 50.0% |
| ACTTGATACGTCGCACGAGC+TGG | + | chr3.3:43223744-43223763 | None:intergenic | 55.0% | |
| CTTGATACGTCGCACGAGCT+GGG | + | chr3.3:43223743-43223762 | None:intergenic | 55.0% | |
| GAAAAGGCCCCAGCAGCATT+AGG | - | chr3.3:43222281-43222300 | MS.gene22662:intron | 55.0% | |
| GGGGAGATCCTGAAATCTGG+GGG | - | chr3.3:43222953-43222972 | MS.gene22662:intron | 55.0% | |
| GGGGGAGATCCTGAAATCTG+GGG | - | chr3.3:43222952-43222971 | MS.gene22662:intron | 55.0% | |
| GTCCTTCAAGTCAGCCAACC+TGG | + | chr3.3:43223097-43223116 | None:intergenic | 55.0% | |
| TCAAGTAGCTGCCTTGCCGT+TGG | - | chr3.3:43223758-43223777 | MS.gene22662:CDS | 55.0% | |
| TTGATACGTCGCACGAGCTG+GGG | + | chr3.3:43223742-43223761 | None:intergenic | 55.0% | |
| !! | CGGCGTTGATTGGTGGAATG+TGG | + | chr3.3:43220910-43220929 | None:intergenic | 55.0% |
| !! | TGTCCTTGGTCTTGTTCCCG+AGG | - | chr3.3:43222352-43222371 | MS.gene22662:CDS | 55.0% |
| AGCTGGCACCCCCAGATTTC+AGG | + | chr3.3:43222964-43222983 | None:intergenic | 60.0% | |
| TGAGCGCAACATGGCAGTGC+CGG | + | chr3.3:43220987-43221006 | None:intergenic | 60.0% | |
| TGGCGTCATGGTGTGCAGCA+AGG | - | chr3.3:43220879-43220898 | MS.gene22662:CDS | 60.0% | |
| !! | AACGGAGACTCCGCCGATTC+CGG | + | chr3.3:43220963-43220982 | None:intergenic | 60.0% |
| !! | AGAACGGCGGCGTTGATTGG+TGG | + | chr3.3:43220917-43220936 | None:intergenic | 60.0% |
| !! | CAACATGGCAGTGCCGGCAA+CGG | + | chr3.3:43220981-43221000 | None:intergenic | 60.0% |
| !! | TGGAGAACGGCGGCGTTGAT+TGG | + | chr3.3:43220920-43220939 | None:intergenic | 60.0% |
| ATCGGCGGAGTCTCCGTTGC+CGG | - | chr3.3:43220965-43220984 | MS.gene22662:intron | 65.0% | |
| GCTTCATGGGCCGCCGGAAT+CGG | - | chr3.3:43220947-43220966 | MS.gene22662:CDS | 65.0% | |
| TCAACGCCGCCGTTCTCCAC+CGG | - | chr3.3:43220921-43220940 | MS.gene22662:CDS | 65.0% | |
| TCTCCACCGGCGCGCTTCAT+GGG | - | chr3.3:43220934-43220953 | MS.gene22662:CDS | 65.0% | |
| TTCTCCACCGGCGCGCTTCA+TGG | - | chr3.3:43220933-43220952 | MS.gene22662:CDS | 65.0% | |
| ! | TGAAGCGCGCCGGTGGAGAA+CGG | + | chr3.3:43220933-43220952 | None:intergenic | 65.0% |
| GCACGAGCTGGGGCAGGTGA+AGG | + | chr3.3:43223732-43223751 | None:intergenic | 70.0% | |
| TACGTCGCACGAGCTGGGGC+AGG | + | chr3.3:43223738-43223757 | None:intergenic | 70.0% | |
| TCATGGGCCGCCGGAATCGG+CGG | - | chr3.3:43220950-43220969 | MS.gene22662:CDS | 70.0% | |
| !! | GGAGACTCCGCCGATTCCGG+CGG | + | chr3.3:43220960-43220979 | None:intergenic | 70.0% |
| ! | AGCGCGCCGGTGGAGAACGG+CGG | + | chr3.3:43220930-43220949 | None:intergenic | 75.0% |
| ! | CGGCCCATGAAGCGCGCCGG+TGG | + | chr3.3:43220940-43220959 | None:intergenic | 80.0% |
| ! | CGGCGCGCTTCATGGGCCGC+CGG | - | chr3.3:43220941-43220960 | MS.gene22662:CDS | 80.0% |
| ! | CGGCGGCCCATGAAGCGCGC+CGG | + | chr3.3:43220943-43220962 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 43220878 | 43223818 | 43220878 | ID=MS.gene22662 |
| chr3.3 | mRNA | 43220878 | 43223818 | 43220878 | ID=MS.gene22662.t1;Parent=MS.gene22662 |
| chr3.3 | exon | 43223635 | 43223818 | 43223635 | ID=MS.gene22662.t1.exon1;Parent=MS.gene22662.t1 |
| chr3.3 | CDS | 43223635 | 43223818 | 43223635 | ID=cds.MS.gene22662.t1;Parent=MS.gene22662.t1 |
| chr3.3 | exon | 43222323 | 43222441 | 43222323 | ID=MS.gene22662.t1.exon2;Parent=MS.gene22662.t1 |
| chr3.3 | CDS | 43222323 | 43222441 | 43222323 | ID=cds.MS.gene22662.t1;Parent=MS.gene22662.t1 |
| chr3.3 | exon | 43222164 | 43222208 | 43222164 | ID=MS.gene22662.t1.exon3;Parent=MS.gene22662.t1 |
| chr3.3 | CDS | 43222164 | 43222208 | 43222164 | ID=cds.MS.gene22662.t1;Parent=MS.gene22662.t1 |
| chr3.3 | exon | 43221685 | 43221758 | 43221685 | ID=MS.gene22662.t1.exon4;Parent=MS.gene22662.t1 |
| chr3.3 | CDS | 43221685 | 43221758 | 43221685 | ID=cds.MS.gene22662.t1;Parent=MS.gene22662.t1 |
| chr3.3 | exon | 43221549 | 43221598 | 43221549 | ID=MS.gene22662.t1.exon5;Parent=MS.gene22662.t1 |
| chr3.3 | CDS | 43221549 | 43221598 | 43221549 | ID=cds.MS.gene22662.t1;Parent=MS.gene22662.t1 |
| chr3.3 | exon | 43220878 | 43220972 | 43220878 | ID=MS.gene22662.t1.exon6;Parent=MS.gene22662.t1 |
| chr3.3 | CDS | 43220878 | 43220972 | 43220878 | ID=cds.MS.gene22662.t1;Parent=MS.gene22662.t1 |
| Gene Sequence |
| Protein sequence |
