Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059338.t1 | XP_013461533.1 | 98.3 | 233 | 4 | 0 | 1 | 233 | 1 | 233 | 3.00E-129 | 471.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059338.t1 | P27084 | 87.4 | 239 | 19 | 3 | 1 | 235 | 1 | 232 | 7.4e-116 | 417.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059338.t1 | I3T560 | 98.3 | 233 | 4 | 0 | 1 | 233 | 1 | 233 | 2.2e-129 | 471.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049385 | MS.gene059338 | 0.959877 | 6.28E-118 | -1.69E-46 |
| MS.gene053272 | MS.gene059338 | 0.814007 | 1.92E-51 | -1.69E-46 |
| MS.gene059338 | MS.gene06551 | 0.819204 | 1.31E-52 | -1.69E-46 |
| MS.gene059338 | MS.gene072153 | -0.806899 | 6.57E-50 | -1.69E-46 |
| MS.gene059338 | MS.gene22662 | 0.800707 | 1.27E-48 | -1.69E-46 |
| MS.gene059338 | MS.gene36512 | 0.800486 | 1.41E-48 | -1.69E-46 |
| MS.gene059338 | MS.gene36571 | -0.800866 | 1.18E-48 | -1.69E-46 |
| MS.gene059338 | MS.gene39376 | 0.807891 | 4.05E-50 | -1.69E-46 |
| MS.gene059338 | MS.gene52592 | 0.83358 | 4.91E-56 | -1.69E-46 |
| MS.gene059338 | MS.gene68543 | -0.823018 | 1.74E-53 | -1.69E-46 |
| MS.gene059338 | MS.gene69206 | 0.829388 | 5.29E-55 | -1.69E-46 |
| MS.gene059338 | MS.gene74761 | 0.811637 | 6.34E-51 | -1.69E-46 |
| MS.gene059338 | MS.gene79650 | 0.804007 | 2.66E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059338.t1 | MTR_3g094250 | 98.283 | 233 | 4 | 0 | 1 | 233 | 1 | 233 | 2.69e-171 | 471 |
| MS.gene059338.t1 | MTR_3g078860 | 32.328 | 232 | 140 | 8 | 7 | 229 | 20 | 243 | 4.11e-29 | 110 |
| MS.gene059338.t1 | MTR_1g048990 | 32.189 | 233 | 129 | 9 | 24 | 232 | 42 | 269 | 1.36e-23 | 96.7 |
| MS.gene059338.t1 | MTR_1g048990 | 30.500 | 200 | 111 | 8 | 24 | 200 | 42 | 236 | 4.44e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059338.t1 | AT3G10920 | 74.569 | 232 | 54 | 1 | 1 | 232 | 1 | 227 | 4.23e-130 | 367 |
| MS.gene059338.t1 | AT3G10920 | 74.138 | 232 | 54 | 2 | 1 | 232 | 1 | 226 | 1.29e-127 | 360 |
| MS.gene059338.t1 | AT3G56350 | 72.864 | 199 | 54 | 0 | 37 | 235 | 37 | 235 | 1.03e-109 | 315 |
| MS.gene059338.t1 | AT5G23310 | 35.417 | 192 | 111 | 7 | 43 | 227 | 57 | 242 | 4.84e-31 | 115 |
| MS.gene059338.t1 | AT5G51100 | 36.036 | 222 | 109 | 9 | 36 | 233 | 53 | 265 | 5.11e-27 | 105 |
| MS.gene059338.t1 | AT5G51100 | 35.922 | 206 | 99 | 10 | 52 | 233 | 1 | 197 | 3.83e-24 | 96.7 |
| MS.gene059338.t1 | AT5G51100 | 35.922 | 206 | 99 | 10 | 52 | 233 | 1 | 197 | 3.83e-24 | 96.7 |
| MS.gene059338.t1 | AT4G25100 | 34.634 | 205 | 120 | 7 | 34 | 233 | 11 | 206 | 1.56e-23 | 94.4 |
| MS.gene059338.t1 | AT4G25100 | 34.634 | 205 | 120 | 7 | 34 | 233 | 11 | 206 | 1.56e-23 | 94.4 |
| MS.gene059338.t1 | AT4G25100 | 34.634 | 205 | 120 | 7 | 34 | 233 | 11 | 206 | 1.56e-23 | 94.4 |
| MS.gene059338.t1 | AT4G25100 | 34.634 | 205 | 120 | 7 | 34 | 233 | 11 | 206 | 1.56e-23 | 94.4 |
| MS.gene059338.t1 | AT5G51100 | 33.333 | 216 | 114 | 9 | 36 | 233 | 53 | 256 | 2.64e-21 | 90.5 |
| MS.gene059338.t1 | AT4G25100 | 33.155 | 187 | 113 | 7 | 52 | 233 | 1 | 180 | 2.50e-20 | 85.5 |
| MS.gene059338.t1 | AT5G51100 | 35.465 | 172 | 82 | 8 | 36 | 184 | 53 | 218 | 2.14e-15 | 73.2 |
| MS.gene059338.t1 | AT5G51100 | 35.465 | 172 | 82 | 8 | 36 | 184 | 53 | 218 | 2.14e-15 | 73.2 |
Find 63 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGCCATTGACACAAATTT+TGG | 0.238876 | 3.4:-85879743 | MS.gene059338:CDS |
| ATGGCTGCTCCGATTGGTTT+TGG | 0.244779 | 3.4:+85881061 | None:intergenic |
| GGAACATGCCTACTACTTAC+AGG | 0.300626 | 3.4:-85878146 | MS.gene059338:intron |
| CAGACTATTTGAAGAACATT+TGG | 0.310661 | 3.4:-85876519 | MS.gene059338:CDS |
| CATTGCTCGGTATAGATGTT+TGG | 0.312843 | 3.4:-85878168 | MS.gene059338:CDS |
| ACATTTGGAAAGTTATTAAC+TGG | 0.319701 | 3.4:-85876504 | MS.gene059338:CDS |
| CATCCCAGGGCTTCCTTTGG+TGG | 0.328922 | 3.4:+85879764 | None:intergenic |
| CCCGATCTCGCTTACGACTA+TGG | 0.335820 | 3.4:-85881004 | MS.gene059338:CDS |
| GCCCATCCCAGGGCTTCCTT+TGG | 0.344963 | 3.4:+85879761 | None:intergenic |
| CAAATGTTCTTCAAATAGTC+TGG | 0.364416 | 3.4:+85876520 | None:intergenic |
| CGGCTCTTCAAGGGTCTGGA+TGG | 0.365032 | 3.4:-85879679 | MS.gene059338:CDS |
| ATTGCTCGGTATAGATGTTT+GGG | 0.369635 | 3.4:-85878167 | MS.gene059338:CDS |
| GGTTGAAACCACTGCAAATC+AGG | 0.379518 | 3.4:-85879498 | MS.gene059338:intron |
| GGTTACTAAAGGAACAAGTT+TGG | 0.383796 | 3.4:-85878194 | MS.gene059338:CDS |
| GCAGAAGGTGCGGCTCTTCA+AGG | 0.391180 | 3.4:-85879689 | MS.gene059338:CDS |
| CGCTTACGACTATGGCGCTT+TGG | 0.395122 | 3.4:-85880996 | MS.gene059338:CDS |
| TTCAAGCGCTTTGTTATAGT+TGG | 0.402926 | 3.4:+85880910 | None:intergenic |
| AGAACCAAAATTTGTGTCAA+TGG | 0.417539 | 3.4:+85879739 | None:intergenic |
| CCATAGTCGTAAGCGAGATC+GGG | 0.431311 | 3.4:+85881004 | None:intergenic |
| GGTGCGGCTCTTCAAGGGTC+TGG | 0.431552 | 3.4:-85879683 | MS.gene059338:CDS |
| TTTAGAAGCGTTGATACAAA+AGG | 0.451692 | 3.4:-85879717 | MS.gene059338:CDS |
| CAGGACCCATTGGTTACTAA+AGG | 0.452543 | 3.4:-85878205 | MS.gene059338:CDS |
| GCCATAGTCGTAAGCGAGAT+CGG | 0.460850 | 3.4:+85881003 | None:intergenic |
| GGCTCTTCAAGGGTCTGGAT+GGG | 0.462524 | 3.4:-85879678 | MS.gene059338:CDS |
| ATGATTTCGCCGCTGATGAC+AGG | 0.463952 | 3.4:+85880971 | None:intergenic |
| CTTGTTCCTTTAGTAACCAA+TGG | 0.466316 | 3.4:+85878199 | None:intergenic |
| GGTGGTTGAGGAATCAGCTT+TGG | 0.475008 | 3.4:+85880868 | None:intergenic |
| TAAGCCACGGGATTGAACTA+TGG | 0.475822 | 3.4:+85881042 | None:intergenic |
| TTGAAGCTTAACGGTGGTTG+AGG | 0.479319 | 3.4:+85880856 | None:intergenic |
| TTGTGTCAATGGCCCATCCC+AGG | 0.494457 | 3.4:+85879750 | None:intergenic |
| TGAACTATGGCTGCTCCGAT+TGG | 0.495870 | 3.4:+85881055 | None:intergenic |
| CACCAAAGGAAGCCCTGGGA+TGG | 0.496518 | 3.4:-85879763 | MS.gene059338:CDS |
| CGCAGTGATCCAAAACCAAT+CGG | 0.497408 | 3.4:-85881070 | MS.gene059338:CDS |
| TTGTTCCTTTAGTAACCAAT+GGG | 0.507204 | 3.4:+85878200 | None:intergenic |
| TGAACCACCAAAGGAAGCCC+TGG | 0.515363 | 3.4:-85879768 | MS.gene059338:CDS |
| CTCTTGACAAAGAATTGAAG+AGG | 0.516660 | 3.4:-85879526 | MS.gene059338:CDS |
| ACAAGTTTGGTTCCATTGCT+CGG | 0.516866 | 3.4:-85878181 | MS.gene059338:CDS |
| ACCAAAGGAAGCCCTGGGAT+GGG | 0.518424 | 3.4:-85879762 | MS.gene059338:CDS |
| CAGTAGGGTTCGAACGGCCA+TGG | 0.533866 | 3.4:+85881120 | None:intergenic |
| CACCTTGTGCAGGAAGGAGG+TGG | 0.538232 | 3.4:-85879791 | MS.gene059338:intron |
| CAGAAGGTGCGGCTCTTCAA+GGG | 0.543085 | 3.4:-85879688 | MS.gene059338:CDS |
| ATACAAAAGGTTAATGCAGA+AGG | 0.549829 | 3.4:-85879704 | MS.gene059338:CDS |
| GCTATCAAGTTCAACGGTGG+AGG | 0.550062 | 3.4:-85880830 | MS.gene059338:intron |
| TGTGTCAATGGCCCATCCCA+GGG | 0.553227 | 3.4:+85879751 | None:intergenic |
| TCTTCAAGGGTCTGGATGGG+TGG | 0.557370 | 3.4:-85879675 | MS.gene059338:intron |
| TTTGCTCAGTAGGGTTCGAA+CGG | 0.564962 | 3.4:+85881114 | None:intergenic |
| ATTGCTCTCATACACTTCAC+TGG | 0.578285 | 3.4:+85876474 | None:intergenic |
| GTGTGAAGACATGTAAGCCA+CGG | 0.597447 | 3.4:+85881029 | None:intergenic |
| GAAGTTTACCTGATTTGCAG+TGG | 0.599308 | 3.4:+85879490 | None:intergenic |
| CAAAATGCTATCAAGTTCAA+CGG | 0.606588 | 3.4:-85880836 | MS.gene059338:CDS |
| TGGATCACTGCGGAGGACGG+TGG | 0.607047 | 3.4:+85881081 | None:intergenic |
| TTACACCTTGTGCAGGAAGG+AGG | 0.610516 | 3.4:-85879794 | MS.gene059338:intron |
| TGTGAAGACATGTAAGCCAC+GGG | 0.611919 | 3.4:+85881030 | None:intergenic |
| CAAAGAATTGAAGAGGCTTG+TGG | 0.612630 | 3.4:-85879519 | MS.gene059338:CDS |
| AGGAGGTGGTGAACCACCAA+AGG | 0.612681 | 3.4:-85879777 | MS.gene059338:CDS |
| GAACCACCAAAGGAAGCCCT+GGG | 0.613579 | 3.4:-85879767 | MS.gene059338:CDS |
| CAAACATCTATACCGAGCAA+TGG | 0.635240 | 3.4:+85878169 | None:intergenic |
| AAAGGTTAATGCAGAAGGTG+CGG | 0.640178 | 3.4:-85879699 | MS.gene059338:CDS |
| CATAGTCGTAAGCGAGATCG+GGG | 0.645280 | 3.4:+85881005 | None:intergenic |
| GCTTTGGAGCCTGTCATCAG+CGG | 0.648229 | 3.4:-85880980 | MS.gene059338:CDS |
| AAGTCTGATGATGTTTCTGA+TGG | 0.672245 | 3.4:+85880939 | None:intergenic |
| GCAGCCATAGTTCAATCCCG+TGG | 0.676613 | 3.4:-85881046 | MS.gene059338:CDS |
| AATGCTATCAAGTTCAACGG+TGG | 0.689102 | 3.4:-85880833 | MS.gene059338:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATTTATGATATTTAAAAAT+GGG | - | chr3.4:85879234-85879253 | MS.gene059338:intron | 10.0% |
| !! | AAATGACAATTAATCATATA+CGG | + | chr3.4:85877650-85877669 | None:intergenic | 15.0% |
| !! | AATTCTTACAAAATCATTAA+AGG | - | chr3.4:85880162-85880181 | MS.gene059338:intron | 15.0% |
| !! | ATGTAACTAATATTAACTAT+TGG | + | chr3.4:85878317-85878336 | None:intergenic | 15.0% |
| !! | ATTCTTACAAAATCATTAAA+GGG | - | chr3.4:85880163-85880182 | MS.gene059338:intron | 15.0% |
| !! | GGAGAAAAATAAATATTATA+AGG | + | chr3.4:85880581-85880600 | None:intergenic | 15.0% |
| !! | GGATTTATGATATTTAAAAA+TGG | - | chr3.4:85879233-85879252 | MS.gene059338:intron | 15.0% |
| !! | GTTAATTAAACGAAAAATTA+CGG | - | chr3.4:85876837-85876856 | MS.gene059338:intron | 15.0% |
| !! | TTATTAGAGAAAAAATAAGA+GGG | - | chr3.4:85879854-85879873 | MS.gene059338:intron | 15.0% |
| !! | TTTACTCTTTATATGATTTA+TGG | - | chr3.4:85880130-85880149 | MS.gene059338:intron | 15.0% |
| !! | TTTATTAGAGAAAAAATAAG+AGG | - | chr3.4:85879853-85879872 | MS.gene059338:intron | 15.0% |
| !!! | TAATTTTTCGTTTAATTAAC+CGG | + | chr3.4:85876837-85876856 | None:intergenic | 15.0% |
| !!! | TATAATGTTTATTGATTTCA+GGG | - | chr3.4:85879045-85879064 | MS.gene059338:intron | 15.0% |
| !! | AAAAAAAAAGAGAGAAATGA+CGG | + | chr3.4:85876788-85876807 | None:intergenic | 20.0% |
| !! | AAAAAAAGTTCAACGTAAAA+AGG | + | chr3.4:85878730-85878749 | None:intergenic | 20.0% |
| !! | AAATTGATTAAGACAAAACA+AGG | + | chr3.4:85878018-85878037 | None:intergenic | 20.0% |
| !! | AATGCTCCATTATTATAATA+TGG | - | chr3.4:85878407-85878426 | MS.gene059338:intron | 20.0% |
| !! | AATTATTCTTGTGTTAGTTA+TGG | - | chr3.4:85879983-85880002 | MS.gene059338:intron | 20.0% |
| !! | AATTGATTAAGACAAAACAA+GGG | + | chr3.4:85878017-85878036 | None:intergenic | 20.0% |
| !! | ACTTGATTATTGTACTATAA+AGG | + | chr3.4:85880717-85880736 | None:intergenic | 20.0% |
| !! | ATGCTCCATTATTATAATAT+GGG | - | chr3.4:85878408-85878427 | MS.gene059338:intron | 20.0% |
| !! | ATTATTCTTGTGTTAGTTAT+GGG | - | chr3.4:85879984-85880003 | MS.gene059338:intron | 20.0% |
| !! | CTTGATTATTGTACTATAAA+GGG | + | chr3.4:85880716-85880735 | None:intergenic | 20.0% |
| !! | TCAAACCCATATTATAATAA+TGG | + | chr3.4:85878416-85878435 | None:intergenic | 20.0% |
| !! | TTCTTACAAAATCATTAAAG+GGG | - | chr3.4:85880164-85880183 | MS.gene059338:intron | 20.0% |
| !! | TTGATTATTGTACTATAAAG+GGG | + | chr3.4:85880715-85880734 | None:intergenic | 20.0% |
| !! | TTTCAAAAAATTTGCACTTA+AGG | + | chr3.4:85880870-85880889 | None:intergenic | 20.0% |
| !!! | AATTTGAACATTTTATTTGC+AGG | - | chr3.4:85879362-85879381 | MS.gene059338:intron | 20.0% |
| !!! | CTATAATGTTTATTGATTTC+AGG | - | chr3.4:85879044-85879063 | MS.gene059338:intron | 20.0% |
| !!! | TATTTATTTTTCTCCTCTTA+TGG | - | chr3.4:85880586-85880605 | MS.gene059338:intron | 20.0% |
| !!! | TGATTTTGTAAGAATTTGAT+AGG | + | chr3.4:85880158-85880177 | None:intergenic | 20.0% |
| !!! | TTCTGATTTTTCAAAACAAT+GGG | - | chr3.4:85878371-85878390 | MS.gene059338:intron | 20.0% |
| !!! | TTTTGTTTGATTACAAATTC+TGG | - | chr3.4:85878213-85878232 | MS.gene059338:intron | 20.0% |
| ! | AAAAAATAAGCCAATCCAAA+CGG | + | chr3.4:85877125-85877144 | None:intergenic | 25.0% |
| ! | AAATAAATTCTACAATGCAG+TGG | + | chr3.4:85880256-85880275 | None:intergenic | 25.0% |
| ! | ACATTTGGAAAGTTATTAAC+TGG | - | chr3.4:85881082-85881101 | MS.gene059338:CDS | 25.0% |
| ! | CGTAAATAAGTCAATACAAA+CGG | - | chr3.4:85877301-85877320 | MS.gene059338:intron | 25.0% |
| ! | GAGTAAATAGCATAAAAATG+AGG | + | chr3.4:85880117-85880136 | None:intergenic | 25.0% |
| ! | GATGGATATAGAAGAATTTA+TGG | + | chr3.4:85878599-85878618 | None:intergenic | 25.0% |
| ! | GTAAATAAGTCAATACAAAC+GGG | - | chr3.4:85877302-85877321 | MS.gene059338:intron | 25.0% |
| ! | GTTAAAAATAATGAGCATGA+CGG | + | chr3.4:85879283-85879302 | None:intergenic | 25.0% |
| ! | TAAACCTAAACAATAACGAT+GGG | - | chr3.4:85880351-85880370 | MS.gene059338:intron | 25.0% |
| ! | TAATTGAAATGTTTAGCTAC+AGG | + | chr3.4:85879577-85879596 | None:intergenic | 25.0% |
| ! | TAGAAATATCTTATGCCATA+AGG | + | chr3.4:85876932-85876951 | None:intergenic | 25.0% |
| ! | TATTCTTGTATCAATTAAGC+TGG | + | chr3.4:85880508-85880527 | None:intergenic | 25.0% |
| !! | AAATTTTACCTGTAAGTAGT+AGG | + | chr3.4:85879451-85879470 | None:intergenic | 25.0% |
| !! | ACTACTTACAGGTAAAATTT+TGG | - | chr3.4:85879451-85879470 | MS.gene059338:intron | 25.0% |
| !! | AGACAAGAAAAGTATAGAAA+TGG | + | chr3.4:85878523-85878542 | None:intergenic | 25.0% |
| !! | ATATCAACCATTCTATTTTC+TGG | - | chr3.4:85877680-85877699 | MS.gene059338:intron | 25.0% |
| !! | GACAAGAAAAGTATAGAAAT+GGG | + | chr3.4:85878522-85878541 | None:intergenic | 25.0% |
| !! | GATTAATTGTCATTTATTGC+AGG | - | chr3.4:85877655-85877674 | MS.gene059338:intron | 25.0% |
| !! | GATTTTTCCAGAAAATAGAA+TGG | + | chr3.4:85877690-85877709 | None:intergenic | 25.0% |
| !! | GCAAGATACGTAAATTTTAT+TGG | + | chr3.4:85878689-85878708 | None:intergenic | 25.0% |
| !! | GTTATCGTAGCTTAATTTTT+AGG | - | chr3.4:85876881-85876900 | MS.gene059338:intron | 25.0% |
| !! | TATCTTGCCACAATTTATTT+TGG | - | chr3.4:85878701-85878720 | MS.gene059338:intron | 25.0% |
| !! | TATGCAATTTTCTTCGTATA+TGG | - | chr3.4:85879194-85879213 | MS.gene059338:intron | 25.0% |
| !! | TTCCAATTTCTAGAGAAAAA+TGG | - | chr3.4:85879107-85879126 | MS.gene059338:intron | 25.0% |
| !!! | ACTTATTCTAGCTTAAATAC+TGG | - | chr3.4:85877352-85877371 | MS.gene059338:intron | 25.0% |
| !!! | ATTTTTTCTCTTAAAATGCC+AGG | - | chr3.4:85879078-85879097 | MS.gene059338:intron | 25.0% |
| !!! | CTTCTGATTTTTCAAAACAA+TGG | - | chr3.4:85878370-85878389 | MS.gene059338:intron | 25.0% |
| !!! | TTCTATTTTCTGGAAAAATC+TGG | - | chr3.4:85877690-85877709 | MS.gene059338:intron | 25.0% |
| AAAAATAAGCCAATCCAAAC+GGG | + | chr3.4:85877124-85877143 | None:intergenic | 30.0% | |
| AAAAGTTCAACGTAAAAAGG+AGG | + | chr3.4:85878727-85878746 | None:intergenic | 30.0% | |
| AAACCTAAACAATAACGATG+GGG | - | chr3.4:85880352-85880371 | MS.gene059338:intron | 30.0% | |
| AAGAACCATTGAATACAGAA+TGG | + | chr3.4:85877760-85877779 | None:intergenic | 30.0% | |
| AATCCATATTGCTTGTAAAC+TGG | - | chr3.4:85877532-85877551 | MS.gene059338:intron | 30.0% | |
| ACAATGTCTGGTCATATATT+AGG | - | chr3.4:85880786-85880805 | MS.gene059338:intron | 30.0% | |
| ACCCATTTAGTGATATTGTT+GGG | - | chr3.4:85879137-85879156 | MS.gene059338:intron | 30.0% | |
| AGAACCAAAATTTGTGTCAA+TGG | + | chr3.4:85877850-85877869 | None:intergenic | 30.0% | |
| AGTTTACAAGCAATATGGAT+TGG | + | chr3.4:85877533-85877552 | None:intergenic | 30.0% | |
| ATACAAAAGGTTAATGCAGA+AGG | - | chr3.4:85877882-85877901 | MS.gene059338:intron | 30.0% | |
| ATAGAAGAATTTATGGTGGT+AGG | + | chr3.4:85878592-85878611 | None:intergenic | 30.0% | |
| ATGTGAGTTTATGTTAGTTC+AGG | + | chr3.4:85879667-85879686 | None:intergenic | 30.0% | |
| ATTAAGCTGTTTATCCAAAC+AGG | - | chr3.4:85877491-85877510 | MS.gene059338:intron | 30.0% | |
| ATTATTGTACTATAAAGGGG+AGG | + | chr3.4:85880712-85880731 | None:intergenic | 30.0% | |
| ATTGCACTATAAATCAGCAA+TGG | + | chr3.4:85878936-85878955 | None:intergenic | 30.0% | |
| CAAAATGCTATCAAGTTCAA+CGG | - | chr3.4:85876750-85876769 | MS.gene059338:intron | 30.0% | |
| CAAATGTTCTTCAAATAGTC+TGG | + | chr3.4:85881069-85881088 | None:intergenic | 30.0% | |
| CACAAATATTTATGCCACTA+GGG | - | chr3.4:85877098-85877117 | MS.gene059338:intron | 30.0% | |
| CAGACTATTTGAAGAACATT+TGG | - | chr3.4:85881067-85881086 | MS.gene059338:CDS | 30.0% | |
| CAGCTTATAGATGTCATAAA+CGG | - | chr3.4:85877047-85877066 | MS.gene059338:intron | 30.0% | |
| CATAATACATGTTAATGCCA+GGG | + | chr3.4:85879631-85879650 | None:intergenic | 30.0% | |
| CTATCATAGTTTCTCTCAAA+AGG | + | chr3.4:85877575-85877594 | None:intergenic | 30.0% | |
| CTGGCATTAACATGTATTAT+GGG | - | chr3.4:85879630-85879649 | MS.gene059338:intron | 30.0% | |
| GATTTACATAGAATACATGC+TGG | + | chr3.4:85877961-85877980 | None:intergenic | 30.0% | |
| GGATATAGAAGAATTTATGG+TGG | + | chr3.4:85878596-85878615 | None:intergenic | 30.0% | |
| GTAAACCTAAACAATAACGA+TGG | - | chr3.4:85880350-85880369 | MS.gene059338:intron | 30.0% | |
| TAACTTCTAACAACCATAAG+AGG | + | chr3.4:85880602-85880621 | None:intergenic | 30.0% | |
| TAAGGTGTAAAGATCTAGAA+TGG | + | chr3.4:85878283-85878302 | None:intergenic | 30.0% | |
| TAGAAATTGGAATTCAATCC+TGG | + | chr3.4:85879099-85879118 | None:intergenic | 30.0% | |
| TAGAATAAGTCAATCCAAAC+AGG | + | chr3.4:85877342-85877361 | None:intergenic | 30.0% | |
| TATTTGAATTTGTCCCTGTT+TGG | + | chr3.4:85877508-85877527 | None:intergenic | 30.0% | |
| TCACAAATATTTATGCCACT+AGG | - | chr3.4:85877097-85877116 | MS.gene059338:intron | 30.0% | |
| TCCCAACAATATCACTAAAT+GGG | + | chr3.4:85879141-85879160 | None:intergenic | 30.0% | |
| TCTAATAAATTTCCACACTG+CGG | + | chr3.4:85879842-85879861 | None:intergenic | 30.0% | |
| TGATAAGTTAGTTCACCTTA+TGG | - | chr3.4:85876914-85876933 | MS.gene059338:intron | 30.0% | |
| TGATGAAATGAAACAATGTC+TGG | - | chr3.4:85880774-85880793 | MS.gene059338:intron | 30.0% | |
| TGTTATTCATAAGCTTGTCA+AGG | - | chr3.4:85877173-85877192 | MS.gene059338:intron | 30.0% | |
| TTAAGCTGTTTATCCAAACA+GGG | - | chr3.4:85877492-85877511 | MS.gene059338:intron | 30.0% | |
| TTATGGGAGTCAGTTATATA+GGG | - | chr3.4:85879928-85879947 | MS.gene059338:intron | 30.0% | |
| TTGTTCCTTTAGTAACCAAT+GGG | + | chr3.4:85879389-85879408 | None:intergenic | 30.0% | |
| ! | ACAGGTAAAATTTTGGACTT+GGG | - | chr3.4:85879458-85879477 | MS.gene059338:intron | 30.0% |
| ! | TACAGGTAAAATTTTGGACT+TGG | - | chr3.4:85879457-85879476 | MS.gene059338:intron | 30.0% |
| ! | TCTATACTTTTCTTGTCTGT+GGG | - | chr3.4:85878525-85878544 | MS.gene059338:intron | 30.0% |
| ! | TTCTATACTTTTCTTGTCTG+TGG | - | chr3.4:85878524-85878543 | MS.gene059338:intron | 30.0% |
| !! | CACCATTTTTCTCTAGAAAT+TGG | + | chr3.4:85879112-85879131 | None:intergenic | 30.0% |
| !! | CTTTTGAGAGAAACTATGAT+AGG | - | chr3.4:85877573-85877592 | MS.gene059338:intron | 30.0% |
| !! | TTTAGAAGCGTTGATACAAA+AGG | - | chr3.4:85877869-85877888 | MS.gene059338:intron | 30.0% |
| !!! | GATAGCATTTTGAAGCTTAA+CGG | + | chr3.4:85876742-85876761 | None:intergenic | 30.0% |
| !!! | TAGAGTTTTTTTGCTCAGTA+GGG | + | chr3.4:85876484-85876503 | None:intergenic | 30.0% |
| !!! | TTAGAGTTTTTTTGCTCAGT+AGG | + | chr3.4:85876485-85876504 | None:intergenic | 30.0% |
| AAAGAGAACATAGTCACTTG+AGG | + | chr3.4:85878884-85878903 | None:intergenic | 35.0% | |
| AACCAAGAGTTCATACAAAG+AGG | + | chr3.4:85878774-85878793 | None:intergenic | 35.0% | |
| AAGGAGGCCAAAATAAATTG+TGG | + | chr3.4:85878711-85878730 | None:intergenic | 35.0% | |
| ACAGAATGGTTTCCATGTAA+CGG | + | chr3.4:85877746-85877765 | None:intergenic | 35.0% | |
| AGTCAGTTATATAGGGATTG+AGG | - | chr3.4:85879935-85879954 | MS.gene059338:intron | 35.0% | |
| ATATTGCTTGTAAACTGGTC+GGG | - | chr3.4:85877537-85877556 | MS.gene059338:intron | 35.0% | |
| ATTGCTCGGTATAGATGTTT+GGG | - | chr3.4:85879419-85879438 | MS.gene059338:intron | 35.0% | |
| CAACAGTTTACTTAAGCTTC+AGG | - | chr3.4:85880535-85880554 | MS.gene059338:intron | 35.0% | |
| CATATTGCTTGTAAACTGGT+CGG | - | chr3.4:85877536-85877555 | MS.gene059338:intron | 35.0% | |
| CCATAATACATGTTAATGCC+AGG | + | chr3.4:85879632-85879651 | None:intergenic | 35.0% | |
| CCTGGCATTAACATGTATTA+TGG | - | chr3.4:85879629-85879648 | MS.gene059338:intron | 35.0% | |
| CTAATAAATTTCCACACTGC+GGG | + | chr3.4:85879841-85879860 | None:intergenic | 35.0% | |
| CTCTTGACAAAGAATTGAAG+AGG | - | chr3.4:85878060-85878079 | MS.gene059338:intron | 35.0% | |
| CTTAACAATCGGAATTCATG+AGG | + | chr3.4:85879811-85879830 | None:intergenic | 35.0% | |
| CTTATGGGAGTCAGTTATAT+AGG | - | chr3.4:85879927-85879946 | MS.gene059338:intron | 35.0% | |
| CTTATTTCCATAAACTCTCC+AGG | + | chr3.4:85877020-85877039 | None:intergenic | 35.0% | |
| CTTGTTCCTTTAGTAACCAA+TGG | + | chr3.4:85879390-85879409 | None:intergenic | 35.0% | |
| GACCCATTTAGTGATATTGT+TGG | - | chr3.4:85879136-85879155 | MS.gene059338:intron | 35.0% | |
| GGAAACCATTCTGTATTCAA+TGG | - | chr3.4:85877752-85877771 | MS.gene059338:intron | 35.0% | |
| GGTTACTAAAGGAACAAGTT+TGG | - | chr3.4:85879392-85879411 | MS.gene059338:intron | 35.0% | |
| GTATACAGCTACGAATTGTT+TGG | + | chr3.4:85878665-85878684 | None:intergenic | 35.0% | |
| GTCCCAACAATATCACTAAA+TGG | + | chr3.4:85879142-85879161 | None:intergenic | 35.0% | |
| TAATCAAGTCTTTCCTCACT+AGG | - | chr3.4:85880728-85880747 | MS.gene059338:intron | 35.0% | |
| TAGTGATATTGTTGGGACTT+GGG | - | chr3.4:85879144-85879163 | MS.gene059338:intron | 35.0% | |
| TTAGTGATATTGTTGGGACT+TGG | - | chr3.4:85879143-85879162 | MS.gene059338:intron | 35.0% | |
| TTCAAAAGAGTAGCATGCAA+AGG | - | chr3.4:85877620-85877639 | MS.gene059338:intron | 35.0% | |
| TTCTATGCATACGTCATTTC+TGG | - | chr3.4:85879319-85879338 | MS.gene059338:intron | 35.0% | |
| ! | AAAATAATGAGCATGACGGA+AGG | + | chr3.4:85879279-85879298 | None:intergenic | 35.0% |
| ! | AAATAATGAGCATGACGGAA+GGG | + | chr3.4:85879278-85879297 | None:intergenic | 35.0% |
| ! | AAGTCTGATGATGTTTCTGA+TGG | + | chr3.4:85876650-85876669 | None:intergenic | 35.0% |
| ! | ATAACTGACTCCCATAAGTT+GGG | + | chr3.4:85879925-85879944 | None:intergenic | 35.0% |
| ! | CTATTGGTAATAGCGATGTA+AGG | + | chr3.4:85878301-85878320 | None:intergenic | 35.0% |
| ! | TAGAAAACTAATGTGCCACT+AGG | + | chr3.4:85880995-85881014 | None:intergenic | 35.0% |
| ! | TATAACTGACTCCCATAAGT+TGG | + | chr3.4:85879926-85879945 | None:intergenic | 35.0% |
| ! | TTCAAGCGCTTTGTTATAGT+TGG | + | chr3.4:85876679-85876698 | None:intergenic | 35.0% |
| !! | AAAGAGTGTTACCCAACTTA+TGG | - | chr3.4:85879911-85879930 | MS.gene059338:CDS | 35.0% |
| !! | AACTAATCCTAGCTTTTCAC+AGG | - | chr3.4:85879739-85879758 | MS.gene059338:CDS | 35.0% |
| !! | AAGAGTGTTACCCAACTTAT+GGG | - | chr3.4:85879912-85879931 | MS.gene059338:CDS | 35.0% |
| !! | ACAGCTTAATTTGCAGCTTA+TGG | + | chr3.4:85877481-85877500 | None:intergenic | 35.0% |
| !! | ACATTTTGATGCAGTACAAC+TGG | + | chr3.4:85880297-85880316 | None:intergenic | 35.0% |
| !! | ACTAATCCTAGCTTTTCACA+GGG | - | chr3.4:85879740-85879759 | MS.gene059338:CDS | 35.0% |
| !! | ATTTTATTTGCAGGACCCAT+TGG | - | chr3.4:85879371-85879390 | MS.gene059338:intron | 35.0% |
| !! | GCGAAATCGTCATTTGTTAT+TGG | - | chr3.4:85876859-85876878 | MS.gene059338:intron | 35.0% |
| !!! | AGTGGCACATTAGTTTTCTA+AGG | - | chr3.4:85880995-85881014 | MS.gene059338:CDS | 35.0% |
| AAAGAGAATGCTGATGTGGT+AGG | - | chr3.4:85879880-85879899 | MS.gene059338:intron | 40.0% | |
| AAAGGTTAATGCAGAAGGTG+CGG | - | chr3.4:85877887-85877906 | MS.gene059338:intron | 40.0% | |
| AAGAGAATGCTGATGTGGTA+GGG | - | chr3.4:85879881-85879900 | MS.gene059338:intron | 40.0% | |
| AAGCTATCCTGGAGAGTTTA+TGG | - | chr3.4:85877010-85877029 | MS.gene059338:intron | 40.0% | |
| AAGGCTGAACTAAAGAAGAG+TGG | + | chr3.4:85879602-85879621 | None:intergenic | 40.0% | |
| AATGCTATCAAGTTCAACGG+TGG | - | chr3.4:85876753-85876772 | MS.gene059338:intron | 40.0% | |
| AATTTGTACTGCATTGCCAG+TGG | - | chr3.4:85878033-85878052 | MS.gene059338:intron | 40.0% | |
| AGAATTTATGGTGGTAGGCT+AGG | + | chr3.4:85878587-85878606 | None:intergenic | 40.0% | |
| AGGCAAAAACTTACACGAAC+AGG | + | chr3.4:85877718-85877737 | None:intergenic | 40.0% | |
| AGGCTGAACTAAAGAAGAGT+GGG | + | chr3.4:85879601-85879620 | None:intergenic | 40.0% | |
| ATAACATGCATCTTCTCCAC+TGG | + | chr3.4:85878637-85878656 | None:intergenic | 40.0% | |
| ATAACCAACTTTGCCTAGTG+AGG | + | chr3.4:85880744-85880763 | None:intergenic | 40.0% | |
| ATATGGACTCTGCATGTTGA+TGG | - | chr3.4:85879211-85879230 | MS.gene059338:intron | 40.0% | |
| ATGATCTCACACAGAGATAG+TGG | + | chr3.4:85880671-85880690 | None:intergenic | 40.0% | |
| ATTGCTCTCATACACTTCAC+TGG | + | chr3.4:85881115-85881134 | None:intergenic | 40.0% | |
| CAAACATCTATACCGAGCAA+TGG | + | chr3.4:85879420-85879439 | None:intergenic | 40.0% | |
| CAAAGAATTGAAGAGGCTTG+TGG | - | chr3.4:85878067-85878086 | MS.gene059338:intron | 40.0% | |
| CAATGGAGTCAGAGATATAG+TGG | + | chr3.4:85878919-85878938 | None:intergenic | 40.0% | |
| CACCTCTTTGTATGAACTCT+TGG | - | chr3.4:85878769-85878788 | MS.gene059338:intron | 40.0% | |
| CAGAGAACATTGTTCTCTGT+AGG | - | chr3.4:85880007-85880026 | MS.gene059338:intron | 40.0% | |
| CATTGCTCGGTATAGATGTT+TGG | - | chr3.4:85879418-85879437 | MS.gene059338:intron | 40.0% | |
| CCAAACAGGTCTTTCATCTA+GGG | + | chr3.4:85877328-85877347 | None:intergenic | 40.0% | |
| CGACCAGTTTACAAGCAATA+TGG | + | chr3.4:85877538-85877557 | None:intergenic | 40.0% | |
| GAATACATTTCTTTGCTGCG+AGG | + | chr3.4:85880833-85880852 | None:intergenic | 40.0% | |
| GAATTTATGGTGGTAGGCTA+GGG | + | chr3.4:85878586-85878605 | None:intergenic | 40.0% | |
| GATGAAAGAGAATGCTGATG+TGG | - | chr3.4:85879876-85879895 | MS.gene059338:intron | 40.0% | |
| GGATTGAGGAGAGAAAGAAT+GGG | - | chr3.4:85879949-85879968 | MS.gene059338:intron | 40.0% | |
| GTTAATGCCAGGGAATGAAA+AGG | + | chr3.4:85879621-85879640 | None:intergenic | 40.0% | |
| TAACATGCATCTTCTCCACT+GGG | + | chr3.4:85878636-85878655 | None:intergenic | 40.0% | |
| TATGGACTCTGCATGTTGAT+GGG | - | chr3.4:85879212-85879231 | MS.gene059338:intron | 40.0% | |
| TATTGCTTGTAAACTGGTCG+GGG | - | chr3.4:85877538-85877557 | MS.gene059338:intron | 40.0% | |
| TCCAAACAGGTCTTTCATCT+AGG | + | chr3.4:85877329-85877348 | None:intergenic | 40.0% | |
| TCTATGGAACGGATACTATC+TGG | - | chr3.4:85879766-85879785 | MS.gene059338:CDS | 40.0% | |
| TGATACTTTACACCTTGTGC+AGG | - | chr3.4:85877785-85877804 | MS.gene059338:intron | 40.0% | |
| TGATCTCACACAGAGATAGT+GGG | + | chr3.4:85880670-85880689 | None:intergenic | 40.0% | |
| TGCAGTGGAAAAACATGTGA+AGG | + | chr3.4:85880241-85880260 | None:intergenic | 40.0% | |
| TGGGAAGGACATTCTTTAGA+TGG | + | chr3.4:85878617-85878636 | None:intergenic | 40.0% | |
| TTCTTTGCCTCTTAGCATCT+CGG | + | chr3.4:85878162-85878181 | None:intergenic | 40.0% | |
| TTGCCCCATCGTTATTGTTT+AGG | + | chr3.4:85880358-85880377 | None:intergenic | 40.0% | |
| TTTGCCTTGATTCCGTTACA+TGG | - | chr3.4:85877731-85877750 | MS.gene059338:intron | 40.0% | |
| ! | AATAATGAGCATGACGGAAG+GGG | + | chr3.4:85879277-85879296 | None:intergenic | 40.0% |
| ! | ACAAGTTTGGTTCCATTGCT+CGG | - | chr3.4:85879405-85879424 | MS.gene059338:intron | 40.0% |
| ! | CTTGAGGCCTGTTGATTAAT+CGG | + | chr3.4:85878868-85878887 | None:intergenic | 40.0% |
| ! | GAAGTTTACCTGATTTGCAG+TGG | + | chr3.4:85878099-85878118 | None:intergenic | 40.0% |
| ! | GTTTCCATGTAACGGAATCA+AGG | + | chr3.4:85877738-85877757 | None:intergenic | 40.0% |
| ! | TGCACAAGGTGTAAAGTATC+AGG | + | chr3.4:85877786-85877805 | None:intergenic | 40.0% |
| ! | TGGGCCATTGACACAAATTT+TGG | - | chr3.4:85877843-85877862 | MS.gene059338:intron | 40.0% |
| ! | TTGAGGCCTGTTGATTAATC+GGG | + | chr3.4:85878867-85878886 | None:intergenic | 40.0% |
| !! | AGATAGTGGGGTAAATACAC+GGG | + | chr3.4:85880657-85880676 | None:intergenic | 40.0% |
| !! | CTAATCCTAGCTTTTCACAG+GGG | - | chr3.4:85879741-85879760 | MS.gene059338:CDS | 40.0% |
| !! | GAGATAGTGGGGTAAATACA+CGG | + | chr3.4:85880658-85880677 | None:intergenic | 40.0% |
| !! | GCTGTTTTGTTAAGCTATCC+TGG | - | chr3.4:85876999-85877018 | MS.gene059338:intron | 40.0% |
| !!! | AGCATTTTGAAGCTTAACGG+TGG | + | chr3.4:85876739-85876758 | None:intergenic | 40.0% |
| AAGCGAACAAACTGAGGACA+AGG | - | chr3.4:85879716-85879735 | MS.gene059338:CDS | 45.0% | |
| ACTTTACACCTTGTGCAGGA+AGG | - | chr3.4:85877789-85877808 | MS.gene059338:intron | 45.0% | |
| AGAAACCCCTGTGAAAAGCT+AGG | + | chr3.4:85879749-85879768 | None:intergenic | 45.0% | |
| AGAGAATGCTGATGTGGTAG+GGG | - | chr3.4:85879882-85879901 | MS.gene059338:intron | 45.0% | |
| AGAGAGGAATTGGAGAAAGG+GGG | + | chr3.4:85879488-85879507 | None:intergenic | 45.0% | |
| ATGGAACGGATACTATCTGG+AGG | - | chr3.4:85879769-85879788 | MS.gene059338:CDS | 45.0% | |
| CATTGTTCTCTGTAGGAGCT+TGG | - | chr3.4:85880014-85880033 | MS.gene059338:intron | 45.0% | |
| CCCTAGATGAAAGACCTGTT+TGG | - | chr3.4:85877325-85877344 | MS.gene059338:intron | 45.0% | |
| CCTCTTAGCATCTCGGAAAA+GGG | + | chr3.4:85878155-85878174 | None:intergenic | 45.0% | |
| CGAGAGAGGAATTGGAGAAA+GGG | + | chr3.4:85879490-85879509 | None:intergenic | 45.0% | |
| CGCAGTGATCCAAAACCAAT+CGG | - | chr3.4:85876516-85876535 | MS.gene059338:CDS | 45.0% | |
| CGTCGTGTTTGTATGTCATC+AGG | + | chr3.4:85879692-85879711 | None:intergenic | 45.0% | |
| CTAAAGAATGTCCTTCCCAG+TGG | - | chr3.4:85878618-85878637 | MS.gene059338:intron | 45.0% | |
| CTTTCCTCACTAGGCAAAGT+TGG | - | chr3.4:85880737-85880756 | MS.gene059338:intron | 45.0% | |
| GAGAGAGGAATTGGAGAAAG+GGG | + | chr3.4:85879489-85879508 | None:intergenic | 45.0% | |
| GATCTCACACAGAGATAGTG+GGG | + | chr3.4:85880669-85880688 | None:intergenic | 45.0% | |
| GCAATGATGCTGAAGCTATC+TGG | - | chr3.4:85878951-85878970 | MS.gene059338:intron | 45.0% | |
| GGAAAAGGGACGAAGTTTGT+TGG | + | chr3.4:85878141-85878160 | None:intergenic | 45.0% | |
| GGAACATGCCTACTACTTAC+AGG | - | chr3.4:85879440-85879459 | MS.gene059338:intron | 45.0% | |
| GGGATTGAGGAGAGAAAGAA+TGG | - | chr3.4:85879948-85879967 | MS.gene059338:intron | 45.0% | |
| GGTTGAAACCACTGCAAATC+AGG | - | chr3.4:85878088-85878107 | MS.gene059338:intron | 45.0% | |
| GTAAATACACGGGGAGGAAA+AGG | + | chr3.4:85880647-85880666 | None:intergenic | 45.0% | |
| GTGTGAAGACATGTAAGCCA+CGG | + | chr3.4:85876560-85876579 | None:intergenic | 45.0% | |
| TAAGCCACGGGATTGAACTA+TGG | + | chr3.4:85876547-85876566 | None:intergenic | 45.0% | |
| TACATTTCTTTGCTGCGAGG+AGG | + | chr3.4:85880830-85880849 | None:intergenic | 45.0% | |
| TACTGGCATAAGCACTAGTG+AGG | - | chr3.4:85877369-85877388 | MS.gene059338:intron | 45.0% | |
| TCACAGGGGTTTCTATGGAA+CGG | - | chr3.4:85879755-85879774 | MS.gene059338:CDS | 45.0% | |
| TGAAACTGCAGAGGACGTTA+TGG | + | chr3.4:85880388-85880407 | None:intergenic | 45.0% | |
| TGGAACGGATACTATCTGGA+GGG | - | chr3.4:85879770-85879789 | MS.gene059338:CDS | 45.0% | |
| TGTGAAGACATGTAAGCCAC+GGG | + | chr3.4:85876559-85876578 | None:intergenic | 45.0% | |
| TTGAAGCTTAACGGTGGTTG+AGG | + | chr3.4:85876733-85876752 | None:intergenic | 45.0% | |
| TTGATGCAGTACAACTGGTC+AGG | + | chr3.4:85880292-85880311 | None:intergenic | 45.0% | |
| TTTGCTCAGTAGGGTTCGAA+CGG | + | chr3.4:85876475-85876494 | None:intergenic | 45.0% | |
| ! | AGTTCAGCCTTTTCATTCCC+TGG | - | chr3.4:85879611-85879630 | MS.gene059338:intron | 45.0% |
| ! | CAGGACCCATTGGTTACTAA+AGG | - | chr3.4:85879381-85879400 | MS.gene059338:intron | 45.0% |
| ! | CTGTTGATTAATCGGGGGTT+GGG | + | chr3.4:85878860-85878879 | None:intergenic | 45.0% |
| ! | GCTTTTCACAGGGGTTTCTA+TGG | - | chr3.4:85879750-85879769 | MS.gene059338:CDS | 45.0% |
| ! | TGAGGCCTGTTGATTAATCG+GGG | + | chr3.4:85878866-85878885 | None:intergenic | 45.0% |
| ! | TGGATGGGTGGTAAGTTTTG+TGG | - | chr3.4:85877923-85877942 | MS.gene059338:intron | 45.0% |
| !! | AAAGGGACGAAGTTTGTTGG+AGG | + | chr3.4:85878138-85878157 | None:intergenic | 45.0% |
| !! | AAGTTTGTTGGAGGTGGAAG+GGG | + | chr3.4:85878129-85878148 | None:intergenic | 45.0% |
| !! | ATGAAGCTCTGAAACTGCAG+AGG | + | chr3.4:85880397-85880416 | None:intergenic | 45.0% |
| !! | CAGTGTTCTGAGATTCCTAG+TGG | - | chr3.4:85880977-85880996 | MS.gene059338:CDS | 45.0% |
| !! | GAAGTTTGTTGGAGGTGGAA+GGG | + | chr3.4:85878130-85878149 | None:intergenic | 45.0% |
| !! | GATAGTGGGGTAAATACACG+GGG | + | chr3.4:85880656-85880675 | None:intergenic | 45.0% |
| !! | TACAAAGAGGTGCTCTGACT+CGG | + | chr3.4:85878761-85878780 | None:intergenic | 45.0% |
| !!! | CGATTGGTTTTGGATCACTG+CGG | + | chr3.4:85876518-85876537 | None:intergenic | 45.0% |
| !!! | AATTTTTATTTTTTATTATC+CGG | - | chr3.4:85876815-85876834 | MS.gene059338:intron | 5.0% |
| !!! | ATTAAATTAATTTTGAATAA+TGG | - | chr3.4:85880423-85880442 | MS.gene059338:intron | 5.0% |
| AAATTTCCACACTGCGGGCA+TGG | + | chr3.4:85879836-85879855 | None:intergenic | 50.0% | |
| AATTTCCACACTGCGGGCAT+GGG | + | chr3.4:85879835-85879854 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr3.4:85879511-85879530 | None:intergenic | 50.0% | |
| AGAGGAATTGGAGAAAGGGG+GGG | + | chr3.4:85879486-85879505 | None:intergenic | 50.0% | |
| ATGATTTCGCCGCTGATGAC+AGG | + | chr3.4:85876618-85876637 | None:intergenic | 50.0% | |
| ATGCATCTTCTCCACTGGGA+AGG | + | chr3.4:85878632-85878651 | None:intergenic | 50.0% | |
| CATAGTCGTAAGCGAGATCG+GGG | + | chr3.4:85876584-85876603 | None:intergenic | 50.0% | |
| CCAACCCCCGATTAATCAAC+AGG | - | chr3.4:85878858-85878877 | MS.gene059338:intron | 50.0% | |
| CCATAGTCGTAAGCGAGATC+GGG | + | chr3.4:85876585-85876604 | None:intergenic | 50.0% | |
| CGGGCATGGGTCTTAACAAT+CGG | + | chr3.4:85879822-85879841 | None:intergenic | 50.0% | |
| CGTCTCAAGCGAACAAACTG+AGG | - | chr3.4:85879710-85879729 | MS.gene059338:CDS | 50.0% | |
| CTTTGTCAAGAGCAAGCCAC+TGG | + | chr3.4:85878052-85878071 | None:intergenic | 50.0% | |
| GAGAATGCTGATGTGGTAGG+GGG | - | chr3.4:85879883-85879902 | MS.gene059338:intron | 50.0% | |
| GAGAGGAATTGGAGAAAGGG+GGG | + | chr3.4:85879487-85879506 | None:intergenic | 50.0% | |
| GCCATAGTCGTAAGCGAGAT+CGG | + | chr3.4:85876586-85876605 | None:intergenic | 50.0% | |
| GCCTCTTAGCATCTCGGAAA+AGG | + | chr3.4:85878156-85878175 | None:intergenic | 50.0% | |
| GCGAGAGAGGAATTGGAGAA+AGG | + | chr3.4:85879491-85879510 | None:intergenic | 50.0% | |
| GCTATCAAGTTCAACGGTGG+AGG | - | chr3.4:85876756-85876775 | MS.gene059338:intron | 50.0% | |
| GGTGGTTGAGGAATCAGCTT+TGG | + | chr3.4:85876721-85876740 | None:intergenic | 50.0% | |
| TGAACTATGGCTGCTCCGAT+TGG | + | chr3.4:85876534-85876553 | None:intergenic | 50.0% | |
| TTACACCTTGTGCAGGAAGG+AGG | - | chr3.4:85877792-85877811 | MS.gene059338:intron | 50.0% | |
| ! | CCCTTTTCCGAGATGCTAAG+AGG | - | chr3.4:85878152-85878171 | MS.gene059338:CDS | 50.0% |
| ! | CCTGTTGATTAATCGGGGGT+TGG | + | chr3.4:85878861-85878880 | None:intergenic | 50.0% |
| ! | GAGGCCTGTTGATTAATCGG+GGG | + | chr3.4:85878865-85878884 | None:intergenic | 50.0% |
| ! | TTTTGGATCACTGCGGAGGA+CGG | + | chr3.4:85876511-85876530 | None:intergenic | 50.0% |
| !! | CGAAGTTTGTTGGAGGTGGA+AGG | + | chr3.4:85878131-85878150 | None:intergenic | 50.0% |
| !!! | ATGGCTGCTCCGATTGGTTT+TGG | + | chr3.4:85876528-85876547 | None:intergenic | 50.0% |
| !!! | TTGGTTTTGGATCACTGCGG+AGG | + | chr3.4:85876515-85876534 | None:intergenic | 50.0% |
| ACCAAAGGAAGCCCTGGGAT+GGG | - | chr3.4:85877824-85877843 | MS.gene059338:intron | 55.0% | |
| AGGAGGTGGTGAACCACCAA+AGG | - | chr3.4:85877809-85877828 | MS.gene059338:intron | 55.0% | |
| AGTGGGGTAAATACACGGGG+AGG | + | chr3.4:85880653-85880672 | None:intergenic | 55.0% | |
| CCCGATCTCGCTTACGACTA+TGG | - | chr3.4:85876582-85876601 | MS.gene059338:intron | 55.0% | |
| CGCTTACGACTATGGCGCTT+TGG | - | chr3.4:85876590-85876609 | MS.gene059338:intron | 55.0% | |
| GAACCACCAAAGGAAGCCCT+GGG | - | chr3.4:85877819-85877838 | MS.gene059338:intron | 55.0% | |
| GAGAGAGGCGAGAGAGGAAT+TGG | + | chr3.4:85879498-85879517 | None:intergenic | 55.0% | |
| GCAGCCATAGTTCAATCCCG+TGG | - | chr3.4:85876540-85876559 | MS.gene059338:intron | 55.0% | |
| GGCTCTTCAAGGGTCTGGAT+GGG | - | chr3.4:85877908-85877927 | MS.gene059338:intron | 55.0% | |
| TCTTCAAGGGTCTGGATGGG+TGG | - | chr3.4:85877911-85877930 | MS.gene059338:intron | 55.0% | |
| TGAACCACCAAAGGAAGCCC+TGG | - | chr3.4:85877818-85877837 | MS.gene059338:intron | 55.0% | |
| TGTGTCAATGGCCCATCCCA+GGG | + | chr3.4:85877838-85877857 | None:intergenic | 55.0% | |
| TTATGCCACTAGGGCCCGTT+TGG | - | chr3.4:85877107-85877126 | MS.gene059338:intron | 55.0% | |
| TTGTGTCAATGGCCCATCCC+AGG | + | chr3.4:85877839-85877858 | None:intergenic | 55.0% | |
| ! | CAGAAGGTGCGGCTCTTCAA+GGG | - | chr3.4:85877898-85877917 | MS.gene059338:intron | 55.0% |
| !! | AGCTTGGCTCTGTGGGCATT+AGG | - | chr3.4:85880030-85880049 | MS.gene059338:intron | 55.0% |
| !! | CTGTAGGAGCTTGGCTCTGT+GGG | - | chr3.4:85880023-85880042 | MS.gene059338:intron | 55.0% |
| !! | GCTTTGGAGCCTGTCATCAG+CGG | - | chr3.4:85876606-85876625 | MS.gene059338:intron | 55.0% |
| !! | GGGACGAAGTTTGTTGGAGG+TGG | + | chr3.4:85878135-85878154 | None:intergenic | 55.0% |
| !! | TCTGTAGGAGCTTGGCTCTG+TGG | - | chr3.4:85880022-85880041 | MS.gene059338:intron | 55.0% |
| CACCAAAGGAAGCCCTGGGA+TGG | - | chr3.4:85877823-85877842 | MS.gene059338:intron | 60.0% | |
| CACCACCTCCTTCCTGCACA+AGG | + | chr3.4:85877800-85877819 | None:intergenic | 60.0% | |
| CACCTTGTGCAGGAAGGAGG+TGG | - | chr3.4:85877795-85877814 | MS.gene059338:intron | 60.0% | |
| CATCCCAGGGCTTCCTTTGG+TGG | + | chr3.4:85877825-85877844 | None:intergenic | 60.0% | |
| CCAATCCAAACGGGCCCTAG+TGG | + | chr3.4:85877115-85877134 | None:intergenic | 60.0% | |
| CCACTAGGGCCCGTTTGGAT+TGG | - | chr3.4:85877112-85877131 | MS.gene059338:intron | 60.0% | |
| CGGCTCTTCAAGGGTCTGGA+TGG | - | chr3.4:85877907-85877926 | MS.gene059338:intron | 60.0% | |
| GAGAGAGAGAGAGGCGAGAG+AGG | + | chr3.4:85879504-85879523 | None:intergenic | 60.0% | |
| TAAGACCCATGCCCGCAGTG+TGG | - | chr3.4:85879827-85879846 | MS.gene059338:intron | 60.0% | |
| TGCTGATGTGGTAGGGGGTG+AGG | - | chr3.4:85879888-85879907 | MS.gene059338:CDS | 60.0% | |
| TGGAGGTGGAAGGGGAAGAG+AGG | + | chr3.4:85878121-85878140 | None:intergenic | 60.0% | |
| ! | GCAGAAGGTGCGGCTCTTCA+AGG | - | chr3.4:85877897-85877916 | MS.gene059338:intron | 60.0% |
| GCCCATCCCAGGGCTTCCTT+TGG | + | chr3.4:85877828-85877847 | None:intergenic | 65.0% | |
| GGTGCGGCTCTTCAAGGGTC+TGG | - | chr3.4:85877903-85877922 | MS.gene059338:intron | 65.0% | |
| TGGATCACTGCGGAGGACGG+TGG | + | chr3.4:85876508-85876527 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 85876468 | 85881140 | 85876468 | ID=MS.gene059338 |
| chr3.4 | mRNA | 85876468 | 85881140 | 85876468 | ID=MS.gene059338.t1;Parent=MS.gene059338 |
| chr3.4 | exon | 85880831 | 85881140 | 85880831 | ID=MS.gene059338.t1.exon1;Parent=MS.gene059338.t1 |
| chr3.4 | CDS | 85880831 | 85881140 | 85880831 | ID=cds.MS.gene059338.t1;Parent=MS.gene059338.t1 |
| chr3.4 | exon | 85879885 | 85879931 | 85879885 | ID=MS.gene059338.t1.exon2;Parent=MS.gene059338.t1 |
| chr3.4 | CDS | 85879885 | 85879931 | 85879885 | ID=cds.MS.gene059338.t1;Parent=MS.gene059338.t1 |
| chr3.4 | exon | 85879676 | 85879801 | 85879676 | ID=MS.gene059338.t1.exon3;Parent=MS.gene059338.t1 |
| chr3.4 | CDS | 85879676 | 85879801 | 85879676 | ID=cds.MS.gene059338.t1;Parent=MS.gene059338.t1 |
| chr3.4 | exon | 85879499 | 85879555 | 85879499 | ID=MS.gene059338.t1.exon4;Parent=MS.gene059338.t1 |
| chr3.4 | CDS | 85879499 | 85879555 | 85879499 | ID=cds.MS.gene059338.t1;Parent=MS.gene059338.t1 |
| chr3.4 | exon | 85878147 | 85878224 | 85878147 | ID=MS.gene059338.t1.exon5;Parent=MS.gene059338.t1 |
| chr3.4 | CDS | 85878147 | 85878224 | 85878147 | ID=cds.MS.gene059338.t1;Parent=MS.gene059338.t1 |
| chr3.4 | exon | 85876468 | 85876557 | 85876468 | ID=MS.gene059338.t1.exon6;Parent=MS.gene059338.t1 |
| chr3.4 | CDS | 85876468 | 85876557 | 85876468 | ID=cds.MS.gene059338.t1;Parent=MS.gene059338.t1 |
| Gene Sequence |
| Protein sequence |
