Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22843.t1 | XP_024626321.1 | 99.5 | 595 | 3 | 0 | 1 | 595 | 1 | 595 | 0.00E+00 | 1228.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22843.t1 | A0A396HDX6 | 99.5 | 595 | 3 | 0 | 1 | 595 | 1 | 595 | 0.0e+00 | 1228.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06118 | MS.gene22843 | -0.800098 | 1.69E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22843.t1 | MTR_2g018850 | 29.310 | 174 | 116 | 3 | 83 | 250 | 278 | 450 | 8.06e-20 | 94.0 |
| MS.gene22843.t1 | MTR_5g081480 | 30.189 | 159 | 87 | 4 | 448 | 594 | 631 | 777 | 7.32e-15 | 78.6 |
| MS.gene22843.t1 | MTR_8g464080 | 24.900 | 249 | 169 | 7 | 327 | 571 | 634 | 868 | 5.85e-13 | 72.4 |
| MS.gene22843.t1 | MTR_7g090610 | 25.000 | 212 | 121 | 3 | 394 | 594 | 14 | 198 | 2.61e-12 | 68.9 |
| MS.gene22843.t1 | MTR_6g462630 | 29.801 | 151 | 88 | 3 | 451 | 594 | 15 | 154 | 3.92e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22843.t1 | AT1G06740 | 47.440 | 586 | 291 | 5 | 16 | 595 | 152 | 726 | 0.0 | 596 |
| MS.gene22843.t1 | AT3G05850 | 35.813 | 578 | 350 | 6 | 22 | 591 | 206 | 770 | 1.66e-127 | 393 |
| MS.gene22843.t1 | AT1G64260 | 22.744 | 532 | 371 | 12 | 22 | 530 | 187 | 701 | 1.71e-39 | 154 |
| MS.gene22843.t1 | AT1G64260 | 22.744 | 532 | 371 | 12 | 22 | 530 | 187 | 701 | 1.71e-39 | 154 |
| MS.gene22843.t1 | AT1G49920 | 22.587 | 549 | 372 | 13 | 22 | 530 | 182 | 717 | 7.56e-33 | 134 |
| MS.gene22843.t1 | AT1G49920 | 22.587 | 549 | 372 | 13 | 22 | 530 | 182 | 717 | 7.56e-33 | 134 |
| MS.gene22843.t1 | AT1G64255 | 20.149 | 536 | 404 | 7 | 11 | 530 | 183 | 710 | 5.26e-28 | 119 |
| MS.gene22843.t1 | AT1G64253 | 23.214 | 336 | 235 | 6 | 230 | 552 | 3 | 328 | 1.83e-24 | 106 |
| MS.gene22843.t1 | AT5G15685 | 22.074 | 299 | 220 | 6 | 2 | 294 | 158 | 449 | 7.10e-19 | 90.5 |
| MS.gene22843.t1 | AT1G64253 | 22.568 | 257 | 185 | 4 | 304 | 552 | 2 | 252 | 2.10e-15 | 78.2 |
Find 146 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTACCGCGCATCAATTTA+TGG | 0.135799 | 7.4:-1575549 | MS.gene22843:CDS |
| AACACTTCCCTCCCTTTCTT+TGG | 0.153388 | 7.4:-1575074 | MS.gene22843:CDS |
| TGTCGCCGATGGCAGCTTTA+TGG | 0.183753 | 7.4:-1574724 | MS.gene22843:CDS |
| CAAAGTTGGTGAACATCTTT+TGG | 0.184362 | 7.4:-1575185 | MS.gene22843:CDS |
| CACAAGTGTGGTCTGCTTGC+AGG | 0.198996 | 7.4:+1575889 | None:intergenic |
| ACGCCATGGGCACCCTTCTT+TGG | 0.236574 | 7.4:+1575959 | None:intergenic |
| CTTGACAGAGCACATCTTAA+AGG | 0.238468 | 7.4:-1575495 | MS.gene22843:CDS |
| CTTCGACAGGTTTCCACATC+TGG | 0.272742 | 7.4:+1576065 | None:intergenic |
| CTGCATACTGTGAGCAAATA+AGG | 0.275626 | 7.4:-1575644 | MS.gene22843:CDS |
| TGGGCTGTTGCATACTTTGA+TGG | 0.279637 | 7.4:-1575054 | MS.gene22843:CDS |
| TAACTGAATTGTTGTATAAC+TGG | 0.280411 | 7.4:-1575002 | MS.gene22843:CDS |
| ACTTCTTATATCAACAATAT+TGG | 0.282991 | 7.4:+1574759 | None:intergenic |
| ACCACATTGGACAACCCTTT+TGG | 0.288472 | 7.4:+1574429 | None:intergenic |
| TCAGAATTACGGAAACTTCT+TGG | 0.294536 | 7.4:-1575357 | MS.gene22843:CDS |
| ACACTTCCCTCCCTTTCTTT+GGG | 0.298268 | 7.4:-1575073 | MS.gene22843:CDS |
| CTTACCGCGCATCAATTTAT+GGG | 0.325056 | 7.4:-1575548 | MS.gene22843:CDS |
| TGATGATGCTTTGTTTCCTT+TGG | 0.325567 | 7.4:-1575430 | MS.gene22843:CDS |
| CGAAGCATGGCTGCCCTTCA+TGG | 0.339804 | 7.4:-1575696 | MS.gene22843:CDS |
| TACTTTGATGGTGTTCGATA+TGG | 0.342916 | 7.4:-1575042 | MS.gene22843:CDS |
| ATGCGCGGTAAGAAATAAAT+AGG | 0.361911 | 7.4:+1575559 | None:intergenic |
| CTTCATTTGCCCGGAGTACT+TGG | 0.369335 | 7.4:+1574812 | None:intergenic |
| ATGGGTTTATAAATGCTTGT+AGG | 0.374379 | 7.4:-1575530 | MS.gene22843:CDS |
| TTTGAGAATGTCCTAACATA+TGG | 0.378862 | 7.4:+1574401 | None:intergenic |
| AGTAAACTAATGCATTCAAA+TGG | 0.379322 | 7.4:+1574363 | None:intergenic |
| ATCTGCTGAGAAGCGAATTT+CGG | 0.389543 | 7.4:-1574860 | MS.gene22843:CDS |
| CATCTTAAAGGAAAATATCT+TGG | 0.390073 | 7.4:-1575483 | MS.gene22843:CDS |
| ATACTGAAAGCGATGAAAAC+TGG | 0.392073 | 7.4:-1575392 | MS.gene22843:CDS |
| ACTAATGGTTGTTCTGCTAT+AGG | 0.394770 | 7.4:+1576104 | None:intergenic |
| TATTCCATCATCTGCACTAC+AGG | 0.404308 | 7.4:+1574958 | None:intergenic |
| CGATATGGCCATTTCACCCT+CGG | 0.404552 | 7.4:-1575027 | MS.gene22843:CDS |
| ATCTTTCAATGTTCTTCGAC+AGG | 0.409761 | 7.4:+1576052 | None:intergenic |
| AGTCGGAACACCAGGACATT+TGG | 0.412522 | 7.4:+1575926 | None:intergenic |
| TAGCTATGCATTTCGATCTT+CGG | 0.416460 | 7.4:-1576022 | MS.gene22843:CDS |
| GGGATTTATCATCTGTGAAT+AGG | 0.416914 | 7.4:+1574603 | None:intergenic |
| CACCAGGACATTTGGCTACA+TGG | 0.417239 | 7.4:+1575934 | None:intergenic |
| AACATGGTTCAGCAAACATA+TGG | 0.423612 | 7.4:+1574650 | None:intergenic |
| TGTGGTTTATGTCAGAATTA+CGG | 0.424002 | 7.4:-1575368 | MS.gene22843:CDS |
| ACAAGTGTGGTCTGCTTGCA+GGG | 0.424496 | 7.4:+1575890 | None:intergenic |
| ATTTCCCTTGGTTTGACTTG+TGG | 0.426103 | 7.4:+1575786 | None:intergenic |
| TGTGGTCGCTGCCATATGTT+AGG | 0.427084 | 7.4:-1574412 | MS.gene22843:CDS |
| CTTATTTGCTCACAGTATGC+AGG | 0.427211 | 7.4:+1575645 | None:intergenic |
| TTTCAAATTCAGCAGCTGTA+AGG | 0.433174 | 7.4:+1575148 | None:intergenic |
| AACTCTTGACCAATGACTAA+TGG | 0.438976 | 7.4:+1576089 | None:intergenic |
| CAGTTACCCCGAGGGTGAAA+TGG | 0.438981 | 7.4:+1575019 | None:intergenic |
| TGAGATGATAGAGGTTTCTC+AGG | 0.451113 | 7.4:-1575115 | MS.gene22843:CDS |
| GAACTTTAAGCGACCCAAAA+GGG | 0.459393 | 7.4:-1574443 | MS.gene22843:CDS |
| ATTGCAAAGTGCTCCAAAGA+AGG | 0.468958 | 7.4:-1575972 | MS.gene22843:CDS |
| TCAGCAGGCGTCAGTAGGTT+GGG | 0.472147 | 7.4:-1575844 | MS.gene22843:CDS |
| ATATCTTGCAAAATTTCCCT+TGG | 0.472974 | 7.4:+1575774 | None:intergenic |
| CCAACAGATGCAATGCTACC+AGG | 0.473539 | 7.4:+1575612 | None:intergenic |
| CTTCATGGAACATTTGAAGA+AGG | 0.478267 | 7.4:-1575681 | MS.gene22843:CDS |
| CAGGGAGCTCATGACATTCA+AGG | 0.482210 | 7.4:+1574977 | None:intergenic |
| CAAGATTACTGAGATGATAG+AGG | 0.484470 | 7.4:-1575124 | MS.gene22843:CDS |
| TTTCTCAGGATGTTATATCA+TGG | 0.486738 | 7.4:-1575101 | MS.gene22843:CDS |
| GCGGCTGCACTTATTTCTTG+TGG | 0.487097 | 7.4:-1574682 | MS.gene22843:CDS |
| TCCGCCAGCAGATGACATCT+TGG | 0.491449 | 7.4:-1574933 | MS.gene22843:CDS |
| ACAGAAACCATGTGAAGCAC+TGG | 0.491680 | 7.4:+1575251 | None:intergenic |
| ATTGCATCTGTTGGTGCCAC+TGG | 0.491725 | 7.4:-1575603 | MS.gene22843:CDS |
| TTCAAATTCAGCAGCTGTAA+GGG | 0.494621 | 7.4:+1575149 | None:intergenic |
| TCAGATAGTATTGTAAGTCT+AGG | 0.494908 | 7.4:+1575315 | None:intergenic |
| CTCATTGCTACCAAGTACTC+CGG | 0.496075 | 7.4:-1574822 | MS.gene22843:CDS |
| GATATGGCCATTTCACCCTC+GGG | 0.497335 | 7.4:-1575026 | MS.gene22843:CDS |
| GCAGAACAACCATTAGTCAT+TGG | 0.498989 | 7.4:-1576098 | MS.gene22843:CDS |
| TGTAAGTCTAGGCATGTTGT+TGG | 0.499009 | 7.4:+1575326 | None:intergenic |
| CTGTTTCTTACATGCAAGCT+TGG | 0.501363 | 7.4:-1575731 | MS.gene22843:CDS |
| AGAACTTTAAGCGACCCAAA+AGG | 0.501703 | 7.4:-1574444 | MS.gene22843:CDS |
| ATCAGCAGGCGTCAGTAGGT+TGG | 0.516430 | 7.4:-1575845 | MS.gene22843:CDS |
| CGTCAGTAGGTTGGGTTGCA+AGG | 0.516852 | 7.4:-1575836 | MS.gene22843:CDS |
| CCATTCCAGACAAAAGTCAA+TGG | 0.518158 | 7.4:-1574582 | MS.gene22843:CDS |
| CTTCTTCAAATGTTCCATGA+AGG | 0.518333 | 7.4:+1575682 | None:intergenic |
| TTGGCTACATGGACACGCCA+TGG | 0.522300 | 7.4:+1575945 | None:intergenic |
| CAAACTCAACTTCATTTGCC+CGG | 0.527781 | 7.4:+1574803 | None:intergenic |
| GAAGGAGCAGAAGGTGGAGG+AGG | 0.532252 | 7.4:-1574547 | MS.gene22843:CDS |
| GTAAACTAATGCATTCAAAT+GGG | 0.532780 | 7.4:+1574364 | None:intergenic |
| GTTTAATGATCGGCGAGAAG+TGG | 0.533346 | 7.4:-1574911 | MS.gene22843:CDS |
| GTATGCAACAGCCCAAAGAA+AGG | 0.534722 | 7.4:+1575062 | None:intergenic |
| TGACATCTTGGTTTAATGAT+CGG | 0.539536 | 7.4:-1574921 | MS.gene22843:CDS |
| GGAGAAGGAGCAGAAGGTGG+AGG | 0.541543 | 7.4:-1574550 | MS.gene22843:CDS |
| CACTGTACAAAGTTACAGAA+TGG | 0.542663 | 7.4:-1574626 | MS.gene22843:CDS |
| TTCTTCAAATGTTCCATGAA+GGG | 0.542748 | 7.4:+1575683 | None:intergenic |
| TTATTTGCTCACAGTATGCA+GGG | 0.545217 | 7.4:+1575646 | None:intergenic |
| AAAAGTCAATGGAGAGAACA+TGG | 0.549394 | 7.4:-1574571 | MS.gene22843:CDS |
| ACATGGTTCAGCAAACATAT+GGG | 0.549492 | 7.4:+1574651 | None:intergenic |
| CACAGTATGCAGGGAGAAGA+CGG | 0.549689 | 7.4:+1575655 | None:intergenic |
| GTGAGTGCTCTTGTCGCCGA+TGG | 0.552863 | 7.4:-1574735 | MS.gene22843:CDS |
| TGGTCAAGAGTTTCCAGATG+TGG | 0.553362 | 7.4:-1576078 | MS.gene22843:CDS |
| AACTGAATTGTTGTATAACT+GGG | 0.556544 | 7.4:-1575001 | MS.gene22843:CDS |
| GCTCCAAAGAAGGGTGCCCA+TGG | 0.556625 | 7.4:-1575962 | MS.gene22843:CDS |
| TATGCAACAGCCCAAAGAAA+GGG | 0.557753 | 7.4:+1575063 | None:intergenic |
| TCGCAACCTTCACCATCAGC+AGG | 0.558380 | 7.4:-1575859 | MS.gene22843:CDS |
| TTGCAAAGTGCTCCAAAGAA+GGG | 0.560435 | 7.4:-1575971 | MS.gene22843:CDS |
| TGGCTACATGGACACGCCAT+GGG | 0.564893 | 7.4:+1575946 | None:intergenic |
| GAACATGGAGAAGGAGCAGA+AGG | 0.569875 | 7.4:-1574556 | MS.gene22843:CDS |
| TAAACCAAGATGTCATCTGC+TGG | 0.570578 | 7.4:+1574929 | None:intergenic |
| TTTAATGATCGGCGAGAAGT+GGG | 0.574723 | 7.4:-1574910 | MS.gene22843:CDS |
| CATGCAAGCTTGGCGAGGGA+AGG | 0.574967 | 7.4:-1575721 | MS.gene22843:CDS |
| GTCCATGTAGCCAAATGTCC+TGG | 0.577000 | 7.4:-1575936 | MS.gene22843:CDS |
| GCTCCCTGTAGTGCAGATGA+TGG | 0.578164 | 7.4:-1574962 | MS.gene22843:CDS |
| GAAATTCGCTTCTCAGCAGA+TGG | 0.578617 | 7.4:+1574862 | None:intergenic |
| CTGACGCCTGCTGATGGTGA+AGG | 0.579521 | 7.4:+1575853 | None:intergenic |
| GCGAGGGAAGGAACGAAGCA+TGG | 0.579823 | 7.4:-1575709 | MS.gene22843:CDS |
| ATCTGAAAGGCAAAGAGGCA+TGG | 0.579938 | 7.4:-1575298 | MS.gene22843:CDS |
| GGCGAGAAGTGGGCATGGAG+TGG | 0.580397 | 7.4:-1574900 | MS.gene22843:CDS |
| CAATGGAGAGAACATGGAGA+AGG | 0.581861 | 7.4:-1574565 | MS.gene22843:CDS |
| CAAGCAGACCACACTTGTGA+AGG | 0.582135 | 7.4:-1575885 | MS.gene22843:CDS |
| CATGGAGAAGGAGCAGAAGG+TGG | 0.583650 | 7.4:-1574553 | MS.gene22843:CDS |
| AAGATCGAAATGCATAGCTA+TGG | 0.586375 | 7.4:+1576025 | None:intergenic |
| AGGGAGCTCATGACATTCAA+GGG | 0.586525 | 7.4:+1574978 | None:intergenic |
| CTTACATGCAAGCTTGGCGA+GGG | 0.587400 | 7.4:-1575725 | MS.gene22843:CDS |
| TGCGAACTCCTTCACAAGTG+TGG | 0.587513 | 7.4:+1575877 | None:intergenic |
| TCTTACATGCAAGCTTGGCG+AGG | 0.587839 | 7.4:-1575726 | MS.gene22843:CDS |
| AACCTACTGACGCCTGCTGA+TGG | 0.592470 | 7.4:+1575847 | None:intergenic |
| ATAGTAAAAGTCGGAACACC+AGG | 0.598716 | 7.4:+1575918 | None:intergenic |
| TCATTGCTACCAAGTACTCC+GGG | 0.598752 | 7.4:-1574821 | MS.gene22843:CDS |
| CAGAAACCATGTGAAGCACT+GGG | 0.599283 | 7.4:+1575252 | None:intergenic |
| GACTTACAATACTATCTGAA+AGG | 0.602595 | 7.4:-1575311 | MS.gene22843:CDS |
| TGATCGGCGAGAAGTGGGCA+TGG | 0.607287 | 7.4:-1574905 | MS.gene22843:CDS |
| GCTCTGTCAAGCTCTAAAAG+AGG | 0.610229 | 7.4:+1575507 | None:intergenic |
| GCAGCCGCAGCATGAGCACA+AGG | 0.611829 | 7.4:+1574697 | None:intergenic |
| AAGGCAAAGAGGCATGGTGG+AGG | 0.612650 | 7.4:-1575292 | MS.gene22843:CDS |
| CAACAGATGCAATGCTACCA+GGG | 0.619659 | 7.4:+1575613 | None:intergenic |
| CAAGATATTCGTGATCAGCA+CGG | 0.620145 | 7.4:-1575759 | MS.gene22843:CDS |
| CCTGGTAGCATTGCATCTGT+TGG | 0.620382 | 7.4:-1575612 | MS.gene22843:CDS |
| CACCATCAGCAGGCGTCAGT+AGG | 0.622339 | 7.4:-1575849 | MS.gene22843:CDS |
| TGCTGAGAAGCGAATTTCGG+AGG | 0.624181 | 7.4:-1574857 | MS.gene22843:CDS |
| GCAACAGCCCAAAGAAAGGG+AGG | 0.625922 | 7.4:+1575066 | None:intergenic |
| ATTCCATCATCTGCACTACA+GGG | 0.626424 | 7.4:+1574959 | None:intergenic |
| ACATATGGCAGCGACCACAT+TGG | 0.631359 | 7.4:+1574416 | None:intergenic |
| CAAATAAGGAAAACAAACCC+TGG | 0.631905 | 7.4:-1575630 | MS.gene22843:CDS |
| AAAGCGATGAAAACTGGATG+TGG | 0.632375 | 7.4:-1575386 | MS.gene22843:CDS |
| TAAACCCATAAATTGATGCG+CGG | 0.635861 | 7.4:+1575544 | None:intergenic |
| GTAAACCATAAAGCTGCCAT+CGG | 0.636546 | 7.4:+1574719 | None:intergenic |
| CCCAAAAGGGTTGTCCAATG+TGG | 0.638922 | 7.4:-1574430 | MS.gene22843:CDS |
| TCAACAACAGCAATAGCCAA+AGG | 0.642654 | 7.4:+1575414 | None:intergenic |
| CAACAATTCAGTTACCCCGA+GGG | 0.650021 | 7.4:+1575011 | None:intergenic |
| CAACAGCCCAAAGAAAGGGA+GGG | 0.651132 | 7.4:+1575067 | None:intergenic |
| ACCAAGATGTCATCTGCTGG+CGG | 0.653252 | 7.4:+1574932 | None:intergenic |
| ATACTATCTGAAAGGCAAAG+AGG | 0.655828 | 7.4:-1575303 | MS.gene22843:CDS |
| ATAATCCACAAGTCAAACCA+AGG | 0.656598 | 7.4:-1575791 | MS.gene22843:CDS |
| TGAAAGGCAAAGAGGCATGG+TGG | 0.657924 | 7.4:-1575295 | MS.gene22843:CDS |
| TTTACCTTGTGCTCATGCTG+CGG | 0.659309 | 7.4:-1574701 | MS.gene22843:CDS |
| TAACTTTGTACAGTGAAACA+TGG | 0.666041 | 7.4:+1574634 | None:intergenic |
| AGGGTTCTGATAGTAAAAGT+CGG | 0.669259 | 7.4:+1575909 | None:intergenic |
| TAATCCACAAGTCAAACCAA+GGG | 0.670460 | 7.4:-1575790 | MS.gene22843:CDS |
| ATATGGCCATTTCACCCTCG+GGG | 0.681167 | 7.4:-1575025 | MS.gene22843:CDS |
| ACAACAATTCAGTTACCCCG+AGG | 0.708400 | 7.4:+1575010 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTCTTATATCAACAATAT+TGG | + | chr7.4:1575765-1575784 | None:intergenic | 20.0% |
| !! | TACATTTAAAAACACAAAGT+TGG | - | chr7.4:1575322-1575341 | MS.gene22843:CDS | 20.0% |
| ! | AACTGAATTGTTGTATAACT+GGG | - | chr7.4:1575520-1575539 | MS.gene22843:CDS | 25.0% |
| ! | CATCTTAAAGGAAAATATCT+TGG | - | chr7.4:1575038-1575057 | MS.gene22843:CDS | 25.0% |
| ! | TAACTGAATTGTTGTATAAC+TGG | - | chr7.4:1575519-1575538 | MS.gene22843:CDS | 25.0% |
| ATATCTTGCAAAATTTCCCT+TGG | + | chr7.4:1574750-1574769 | None:intergenic | 30.0% | |
| ATGGGTTTATAAATGCTTGT+AGG | - | chr7.4:1574991-1575010 | MS.gene22843:CDS | 30.0% | |
| GACTTACAATACTATCTGAA+AGG | - | chr7.4:1575210-1575229 | MS.gene22843:CDS | 30.0% | |
| TAACTTTGTACAGTGAAACA+TGG | + | chr7.4:1575890-1575909 | None:intergenic | 30.0% | |
| TCAGATAGTATTGTAAGTCT+AGG | + | chr7.4:1575209-1575228 | None:intergenic | 30.0% | |
| TGACATCTTGGTTTAATGAT+CGG | - | chr7.4:1575600-1575619 | MS.gene22843:CDS | 30.0% | |
| TGTGGTTTATGTCAGAATTA+CGG | - | chr7.4:1575153-1575172 | MS.gene22843:CDS | 30.0% | |
| TTCTTCAAATGTTCCATGAA+GGG | + | chr7.4:1574841-1574860 | None:intergenic | 30.0% | |
| TTTCTCAGGATGTTATATCA+TGG | - | chr7.4:1575420-1575439 | MS.gene22843:CDS | 30.0% | |
| TTTGAGAATGTCCTAACATA+TGG | + | chr7.4:1576123-1576142 | None:intergenic | 30.0% | |
| ! | AAAACAATTTTCTTGTCCAG+TGG | + | chr7.4:1574937-1574956 | None:intergenic | 30.0% |
| AAAAGTCAATGGAGAGAACA+TGG | - | chr7.4:1575950-1575969 | MS.gene22843:CDS | 35.0% | |
| AACATGGTTCAGCAAACATA+TGG | + | chr7.4:1575874-1575893 | None:intergenic | 35.0% | |
| AACTCTTGACCAATGACTAA+TGG | + | chr7.4:1574435-1574454 | None:intergenic | 35.0% | |
| AAGATCGAAATGCATAGCTA+TGG | + | chr7.4:1574499-1574518 | None:intergenic | 35.0% | |
| ACATGGTTCAGCAAACATAT+GGG | + | chr7.4:1575873-1575892 | None:intergenic | 35.0% | |
| ACTAATGGTTGTTCTGCTAT+AGG | + | chr7.4:1574420-1574439 | None:intergenic | 35.0% | |
| ATAATCCACAAGTCAAACCA+AGG | - | chr7.4:1574730-1574749 | MS.gene22843:CDS | 35.0% | |
| ATACTATCTGAAAGGCAAAG+AGG | - | chr7.4:1575218-1575237 | MS.gene22843:CDS | 35.0% | |
| ATACTGAAAGCGATGAAAAC+TGG | - | chr7.4:1575129-1575148 | MS.gene22843:CDS | 35.0% | |
| ATCTTTCAATGTTCTTCGAC+AGG | + | chr7.4:1574472-1574491 | None:intergenic | 35.0% | |
| ATGCGCGGTAAGAAATAAAT+AGG | + | chr7.4:1574965-1574984 | None:intergenic | 35.0% | |
| CAAATAAGGAAAACAAACCC+TGG | - | chr7.4:1574891-1574910 | MS.gene22843:CDS | 35.0% | |
| CAAGATTACTGAGATGATAG+AGG | - | chr7.4:1575397-1575416 | MS.gene22843:CDS | 35.0% | |
| CACTGTACAAAGTTACAGAA+TGG | - | chr7.4:1575895-1575914 | MS.gene22843:CDS | 35.0% | |
| CTTCATGGAACATTTGAAGA+AGG | - | chr7.4:1574840-1574859 | MS.gene22843:CDS | 35.0% | |
| CTTCTTCAAATGTTCCATGA+AGG | + | chr7.4:1574842-1574861 | None:intergenic | 35.0% | |
| GGGATTTATCATCTGTGAAT+AGG | + | chr7.4:1575921-1575940 | None:intergenic | 35.0% | |
| TAAACCCATAAATTGATGCG+CGG | + | chr7.4:1574980-1574999 | None:intergenic | 35.0% | |
| TAATCCACAAGTCAAACCAA+GGG | - | chr7.4:1574731-1574750 | MS.gene22843:CDS | 35.0% | |
| TAGCTATGCATTTCGATCTT+CGG | - | chr7.4:1574499-1574518 | MS.gene22843:CDS | 35.0% | |
| TCAGAATTACGGAAACTTCT+TGG | - | chr7.4:1575164-1575183 | MS.gene22843:CDS | 35.0% | |
| TTATTTGCTCACAGTATGCA+GGG | + | chr7.4:1574878-1574897 | None:intergenic | 35.0% | |
| TTCAAATTCAGCAGCTGTAA+GGG | + | chr7.4:1575375-1575394 | None:intergenic | 35.0% | |
| TTTCAAATTCAGCAGCTGTA+AGG | + | chr7.4:1575376-1575395 | None:intergenic | 35.0% | |
| ! | ACTCTCAGAACCTTCTTTTT+CGG | + | chr7.4:1576055-1576074 | None:intergenic | 35.0% |
| ! | AGGGTTCTGATAGTAAAAGT+CGG | + | chr7.4:1574615-1574634 | None:intergenic | 35.0% |
| !! | TACTTTGATGGTGTTCGATA+TGG | - | chr7.4:1575479-1575498 | MS.gene22843:CDS | 35.0% |
| !! | TGATGATGCTTTGTTTCCTT+TGG | - | chr7.4:1575091-1575110 | MS.gene22843:CDS | 35.0% |
| !!! | CAAAGTTGGTGAACATCTTT+TGG | - | chr7.4:1575336-1575355 | MS.gene22843:CDS | 35.0% |
| !!! | CATTGACTTTTGTCTGGAAT+GGG | + | chr7.4:1575941-1575960 | None:intergenic | 35.0% |
| AAAGCGATGAAAACTGGATG+TGG | - | chr7.4:1575135-1575154 | MS.gene22843:CDS | 40.0% | |
| AGAACTTTAAGCGACCCAAA+AGG | - | chr7.4:1576077-1576096 | MS.gene22843:CDS | 40.0% | |
| ATAGTAAAAGTCGGAACACC+AGG | + | chr7.4:1574606-1574625 | None:intergenic | 40.0% | |
| ATCTGCTGAGAAGCGAATTT+CGG | - | chr7.4:1575661-1575680 | MS.gene22843:CDS | 40.0% | |
| ATTCCATCATCTGCACTACA+GGG | + | chr7.4:1575565-1575584 | None:intergenic | 40.0% | |
| CAAACTCAACTTCATTTGCC+CGG | + | chr7.4:1575721-1575740 | None:intergenic | 40.0% | |
| CAAGATATTCGTGATCAGCA+CGG | - | chr7.4:1574762-1574781 | MS.gene22843:CDS | 40.0% | |
| CCATTCCAGACAAAAGTCAA+TGG | - | chr7.4:1575939-1575958 | MS.gene22843:CDS | 40.0% | |
| CTGCATACTGTGAGCAAATA+AGG | - | chr7.4:1574877-1574896 | MS.gene22843:CDS | 40.0% | |
| CTTACCGCGCATCAATTTAT+GGG | - | chr7.4:1574973-1574992 | MS.gene22843:CDS | 40.0% | |
| CTTATTTGCTCACAGTATGC+AGG | + | chr7.4:1574879-1574898 | None:intergenic | 40.0% | |
| CTTGACAGAGCACATCTTAA+AGG | - | chr7.4:1575026-1575045 | MS.gene22843:CDS | 40.0% | |
| GAACTTTAAGCGACCCAAAA+GGG | - | chr7.4:1576078-1576097 | MS.gene22843:CDS | 40.0% | |
| GCAGAACAACCATTAGTCAT+TGG | - | chr7.4:1574423-1574442 | MS.gene22843:CDS | 40.0% | |
| GTAAACCATAAAGCTGCCAT+CGG | + | chr7.4:1575805-1575824 | None:intergenic | 40.0% | |
| TAAACCAAGATGTCATCTGC+TGG | + | chr7.4:1575595-1575614 | None:intergenic | 40.0% | |
| TATGCAACAGCCCAAAGAAA+GGG | + | chr7.4:1575461-1575480 | None:intergenic | 40.0% | |
| TATTCCATCATCTGCACTAC+AGG | + | chr7.4:1575566-1575585 | None:intergenic | 40.0% | |
| TCAACAACAGCAATAGCCAA+AGG | + | chr7.4:1575110-1575129 | None:intergenic | 40.0% | |
| TCTTACCGCGCATCAATTTA+TGG | - | chr7.4:1574972-1574991 | MS.gene22843:CDS | 40.0% | |
| TGAGATGATAGAGGTTTCTC+AGG | - | chr7.4:1575406-1575425 | MS.gene22843:CDS | 40.0% | |
| TGTAAGTCTAGGCATGTTGT+TGG | + | chr7.4:1575198-1575217 | None:intergenic | 40.0% | |
| TTTAATGATCGGCGAGAAGT+GGG | - | chr7.4:1575611-1575630 | MS.gene22843:CDS | 40.0% | |
| ! | ATTGCAAAGTGCTCCAAAGA+AGG | - | chr7.4:1574549-1574568 | MS.gene22843:CDS | 40.0% |
| ! | CTGTTTCTTACATGCAAGCT+TGG | - | chr7.4:1574790-1574809 | MS.gene22843:CDS | 40.0% |
| ! | TTGCAAAGTGCTCCAAAGAA+GGG | - | chr7.4:1574550-1574569 | MS.gene22843:CDS | 40.0% |
| !! | ATTTCCCTTGGTTTGACTTG+TGG | + | chr7.4:1574738-1574757 | None:intergenic | 40.0% |
| !!! | CCATTGACTTTTGTCTGGAA+TGG | + | chr7.4:1575942-1575961 | None:intergenic | 40.0% |
| !!! | TCTCTCCATTGACTTTTGTC+TGG | + | chr7.4:1575947-1575966 | None:intergenic | 40.0% |
| AACACTTCCCTCCCTTTCTT+TGG | - | chr7.4:1575447-1575466 | MS.gene22843:CDS | 45.0% | |
| ACAACAATTCAGTTACCCCG+AGG | + | chr7.4:1575514-1575533 | None:intergenic | 45.0% | |
| ACACTTCCCTCCCTTTCTTT+GGG | - | chr7.4:1575448-1575467 | MS.gene22843:CDS | 45.0% | |
| ACAGAAACCATGTGAAGCAC+TGG | + | chr7.4:1575273-1575292 | None:intergenic | 45.0% | |
| AGGGAGCTCATGACATTCAA+GGG | + | chr7.4:1575546-1575565 | None:intergenic | 45.0% | |
| ATCTGAAAGGCAAAGAGGCA+TGG | - | chr7.4:1575223-1575242 | MS.gene22843:CDS | 45.0% | |
| CAACAATTCAGTTACCCCGA+GGG | + | chr7.4:1575513-1575532 | None:intergenic | 45.0% | |
| CAACAGATGCAATGCTACCA+GGG | + | chr7.4:1574911-1574930 | None:intergenic | 45.0% | |
| CAATGGAGAGAACATGGAGA+AGG | - | chr7.4:1575956-1575975 | MS.gene22843:CDS | 45.0% | |
| CTCATTGCTACCAAGTACTC+CGG | - | chr7.4:1575699-1575718 | MS.gene22843:CDS | 45.0% | |
| GAAATTCGCTTCTCAGCAGA+TGG | + | chr7.4:1575662-1575681 | None:intergenic | 45.0% | |
| GTATGCAACAGCCCAAAGAA+AGG | + | chr7.4:1575462-1575481 | None:intergenic | 45.0% | |
| GTTTAATGATCGGCGAGAAG+TGG | - | chr7.4:1575610-1575629 | MS.gene22843:CDS | 45.0% | |
| TCATTGCTACCAAGTACTCC+GGG | - | chr7.4:1575700-1575719 | MS.gene22843:CDS | 45.0% | |
| TGGGCTGTTGCATACTTTGA+TGG | - | chr7.4:1575467-1575486 | MS.gene22843:CDS | 45.0% | |
| TGGTCAAGAGTTTCCAGATG+TGG | - | chr7.4:1574443-1574462 | MS.gene22843:CDS | 45.0% | |
| TTTACCTTGTGCTCATGCTG+CGG | - | chr7.4:1575820-1575839 | MS.gene22843:CDS | 45.0% | |
| ! | ACCACATTGGACAACCCTTT+TGG | + | chr7.4:1576095-1576114 | None:intergenic | 45.0% |
| ! | CAGAAACCATGTGAAGCACT+GGG | + | chr7.4:1575272-1575291 | None:intergenic | 45.0% |
| ! | CATTTTCCCAGTGCTTCACA+TGG | - | chr7.4:1575263-1575282 | MS.gene22843:CDS | 45.0% |
| ! | CCACATTGGACAACCCTTTT+GGG | + | chr7.4:1576094-1576113 | None:intergenic | 45.0% |
| !! | GCTCTGTCAAGCTCTAAAAG+AGG | + | chr7.4:1575017-1575036 | None:intergenic | 45.0% |
| ACAAGTGTGGTCTGCTTGCA+GGG | + | chr7.4:1574634-1574653 | None:intergenic | 50.0% | |
| ACATATGGCAGCGACCACAT+TGG | + | chr7.4:1576108-1576127 | None:intergenic | 50.0% | |
| ACCAAGATGTCATCTGCTGG+CGG | + | chr7.4:1575592-1575611 | None:intergenic | 50.0% | |
| AGTCGGAACACCAGGACATT+TGG | + | chr7.4:1574598-1574617 | None:intergenic | 50.0% | |
| ATATGGCCATTTCACCCTCG+GGG | - | chr7.4:1575496-1575515 | MS.gene22843:CDS | 50.0% | |
| CAACAGCCCAAAGAAAGGGA+GGG | + | chr7.4:1575457-1575476 | None:intergenic | 50.0% | |
| CAAGCAGACCACACTTGTGA+AGG | - | chr7.4:1574636-1574655 | MS.gene22843:CDS | 50.0% | |
| CACAGTATGCAGGGAGAAGA+CGG | + | chr7.4:1574869-1574888 | None:intergenic | 50.0% | |
| CACCAGGACATTTGGCTACA+TGG | + | chr7.4:1574590-1574609 | None:intergenic | 50.0% | |
| CAGGGAGCTCATGACATTCA+AGG | + | chr7.4:1575547-1575566 | None:intergenic | 50.0% | |
| CCAACAGATGCAATGCTACC+AGG | + | chr7.4:1574912-1574931 | None:intergenic | 50.0% | |
| CCCAAAAGGGTTGTCCAATG+TGG | - | chr7.4:1576091-1576110 | MS.gene22843:CDS | 50.0% | |
| CCTGGTAGCATTGCATCTGT+TGG | - | chr7.4:1574909-1574928 | MS.gene22843:CDS | 50.0% | |
| CGATATGGCCATTTCACCCT+CGG | - | chr7.4:1575494-1575513 | MS.gene22843:CDS | 50.0% | |
| CTTACATGCAAGCTTGGCGA+GGG | - | chr7.4:1574796-1574815 | MS.gene22843:CDS | 50.0% | |
| CTTCGACAGGTTTCCACATC+TGG | + | chr7.4:1574459-1574478 | None:intergenic | 50.0% | |
| GAACATGGAGAAGGAGCAGA+AGG | - | chr7.4:1575965-1575984 | MS.gene22843:CDS | 50.0% | |
| GATATGGCCATTTCACCCTC+GGG | - | chr7.4:1575495-1575514 | MS.gene22843:CDS | 50.0% | |
| GTCCATGTAGCCAAATGTCC+TGG | - | chr7.4:1574585-1574604 | MS.gene22843:CDS | 50.0% | |
| TCTTACATGCAAGCTTGGCG+AGG | - | chr7.4:1574795-1574814 | MS.gene22843:CDS | 50.0% | |
| TGCGAACTCCTTCACAAGTG+TGG | + | chr7.4:1574647-1574666 | None:intergenic | 50.0% | |
| TGCTGAGAAGCGAATTTCGG+AGG | - | chr7.4:1575664-1575683 | MS.gene22843:CDS | 50.0% | |
| TGTGGTCGCTGCCATATGTT+AGG | - | chr7.4:1576109-1576128 | MS.gene22843:CDS | 50.0% | |
| ! | CTTCATTTGCCCGGAGTACT+TGG | + | chr7.4:1575712-1575731 | None:intergenic | 50.0% |
| ! | GCGGCTGCACTTATTTCTTG+TGG | - | chr7.4:1575839-1575858 | MS.gene22843:CDS | 50.0% |
| ! | TGAAAGGCAAAGAGGCATGG+TGG | - | chr7.4:1575226-1575245 | MS.gene22843:CDS | 50.0% |
| !! | ATTGCATCTGTTGGTGCCAC+TGG | - | chr7.4:1574918-1574937 | MS.gene22843:CDS | 50.0% |
| !!! | ACCTTCTTTTTCGGCCTTCC+AGG | + | chr7.4:1576046-1576065 | None:intergenic | 50.0% |
| !!! | CCTTCTTTTTCGGCCTTCCA+GGG | + | chr7.4:1576045-1576064 | None:intergenic | 50.0% |
| !!! | CTTCTTTTTCGGCCTTCCAG+GGG | + | chr7.4:1576044-1576063 | None:intergenic | 50.0% |
| !!! | TTCTTTTTCGGCCTTCCAGG+GGG | + | chr7.4:1576043-1576062 | None:intergenic | 50.0% |
| AACCTACTGACGCCTGCTGA+TGG | + | chr7.4:1574677-1574696 | None:intergenic | 55.0% | |
| ATCAGCAGGCGTCAGTAGGT+TGG | - | chr7.4:1574676-1574695 | MS.gene22843:CDS | 55.0% | |
| CACAAGTGTGGTCTGCTTGC+AGG | + | chr7.4:1574635-1574654 | None:intergenic | 55.0% | |
| CAGTTACCCCGAGGGTGAAA+TGG | + | chr7.4:1575505-1575524 | None:intergenic | 55.0% | |
| CATGGAGAAGGAGCAGAAGG+TGG | - | chr7.4:1575968-1575987 | MS.gene22843:CDS | 55.0% | |
| CCCTGGAAGGCCGAAAAAGA+AGG | - | chr7.4:1576042-1576061 | MS.gene22843:CDS | 55.0% | |
| GCAACAGCCCAAAGAAAGGG+AGG | + | chr7.4:1575458-1575477 | None:intergenic | 55.0% | |
| GCTCCCTGTAGTGCAGATGA+TGG | - | chr7.4:1575559-1575578 | MS.gene22843:CDS | 55.0% | |
| TCAGCAGGCGTCAGTAGGTT+GGG | - | chr7.4:1574677-1574696 | MS.gene22843:CDS | 55.0% | |
| TCCGCCAGCAGATGACATCT+TGG | - | chr7.4:1575588-1575607 | MS.gene22843:CDS | 55.0% | |
| TCGCAACCTTCACCATCAGC+AGG | - | chr7.4:1574662-1574681 | MS.gene22843:CDS | 55.0% | |
| TGGCTACATGGACACGCCAT+GGG | + | chr7.4:1574578-1574597 | None:intergenic | 55.0% | |
| TGTCGCCGATGGCAGCTTTA+TGG | - | chr7.4:1575797-1575816 | MS.gene22843:CDS | 55.0% | |
| TTGGCTACATGGACACGCCA+TGG | + | chr7.4:1574579-1574598 | None:intergenic | 55.0% | |
| ! | AAGGCAAAGAGGCATGGTGG+AGG | - | chr7.4:1575229-1575248 | MS.gene22843:CDS | 55.0% |
| ! | CGTCAGTAGGTTGGGTTGCA+AGG | - | chr7.4:1574685-1574704 | MS.gene22843:CDS | 55.0% |
| !!! | GGGGACGGCGAATTTTTGGT+GGG | + | chr7.4:1576024-1576043 | None:intergenic | 55.0% |
| AAATTCGCCGTCCCCCTGGA+AGG | - | chr7.4:1576029-1576048 | MS.gene22843:CDS | 60.0% | |
| ACGCCATGGGCACCCTTCTT+TGG | + | chr7.4:1574565-1574584 | None:intergenic | 60.0% | |
| CACCATCAGCAGGCGTCAGT+AGG | - | chr7.4:1574672-1574691 | MS.gene22843:CDS | 60.0% | |
| CATGCAAGCTTGGCGAGGGA+AGG | - | chr7.4:1574800-1574819 | MS.gene22843:CDS | 60.0% | |
| CCAAAAATTCGCCGTCCCCC+TGG | - | chr7.4:1576025-1576044 | MS.gene22843:CDS | 60.0% | |
| CGAAGCATGGCTGCCCTTCA+TGG | - | chr7.4:1574825-1574844 | MS.gene22843:CDS | 60.0% | |
| GAAGGAGCAGAAGGTGGAGG+AGG | - | chr7.4:1575974-1575993 | MS.gene22843:CDS | 60.0% | |
| GCGAGGGAAGGAACGAAGCA+TGG | - | chr7.4:1574812-1574831 | MS.gene22843:CDS | 60.0% | |
| GGAGAAGGAGCAGAAGGTGG+AGG | - | chr7.4:1575971-1575990 | MS.gene22843:CDS | 60.0% | |
| GTGAGTGCTCTTGTCGCCGA+TGG | - | chr7.4:1575786-1575805 | MS.gene22843:CDS | 60.0% | |
| TGATCGGCGAGAAGTGGGCA+TGG | - | chr7.4:1575616-1575635 | MS.gene22843:CDS | 60.0% | |
| ! | CCAGGGGGACGGCGAATTTT+TGG | + | chr7.4:1576028-1576047 | None:intergenic | 60.0% |
| ! | CTGACGCCTGCTGATGGTGA+AGG | + | chr7.4:1574671-1574690 | None:intergenic | 60.0% |
| ! | TTTTCGGCCTTCCAGGGGGA+CGG | + | chr7.4:1576039-1576058 | None:intergenic | 60.0% |
| !! | GCTCCAAAGAAGGGTGCCCA+TGG | - | chr7.4:1574559-1574578 | MS.gene22843:CDS | 60.0% |
| !! | GGGGGACGGCGAATTTTTGG+TGG | + | chr7.4:1576025-1576044 | None:intergenic | 60.0% |
| GCAGCCGCAGCATGAGCACA+AGG | + | chr7.4:1575827-1575846 | None:intergenic | 65.0% | |
| GGCGAGAAGTGGGCATGGAG+TGG | - | chr7.4:1575621-1575640 | MS.gene22843:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 1574378 | 1576165 | 1574378 | ID=MS.gene22843 |
| chr7.4 | mRNA | 1574378 | 1576165 | 1574378 | ID=MS.gene22843.t1;Parent=MS.gene22843 |
| chr7.4 | exon | 1574378 | 1576165 | 1574378 | ID=MS.gene22843.t1.exon1;Parent=MS.gene22843.t1 |
| chr7.4 | CDS | 1574378 | 1576165 | 1574378 | ID=cds.MS.gene22843.t1;Parent=MS.gene22843.t1 |
| Gene Sequence |
| Protein sequence |
