Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22987.t1 | RHN48932.1 | 92.5 | 306 | 21 | 1 | 1 | 304 | 1 | 306 | 3.90E-60 | 241.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22987.t1 | Q84J88 | 59.2 | 71 | 29 | 0 | 17 | 87 | 25 | 95 | 2.2e-19 | 97.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22987.t1 | G7KRU9 | 92.5 | 306 | 21 | 1 | 1 | 304 | 1 | 306 | 2.8e-60 | 241.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053776 | MS.gene22987 | 0.826931 | 2.07E-54 | -1.69E-46 |
| MS.gene06081 | MS.gene22987 | 0.824166 | 9.35E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22987.t1 | MTR_7g108560 | 96.732 | 306 | 8 | 2 | 1 | 304 | 1 | 306 | 0.0 | 593 |
| MS.gene22987.t1 | MTR_4g119820 | 35.016 | 317 | 146 | 14 | 19 | 304 | 71 | 358 | 5.43e-35 | 130 |
| MS.gene22987.t1 | MTR_1g107565 | 67.606 | 71 | 23 | 0 | 16 | 86 | 7 | 77 | 3.91e-26 | 106 |
| MS.gene22987.t1 | MTR_2g022250 | 67.143 | 70 | 23 | 0 | 17 | 86 | 5 | 74 | 2.87e-24 | 102 |
| MS.gene22987.t1 | MTR_4g117140 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 2.89e-23 | 100 |
| MS.gene22987.t1 | MTR_4g117220 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 3.32e-23 | 99.8 |
| MS.gene22987.t1 | MTR_2g436830 | 57.471 | 87 | 29 | 1 | 2 | 88 | 3 | 81 | 2.18e-22 | 95.1 |
| MS.gene22987.t1 | MTR_7g113110 | 47.899 | 119 | 58 | 2 | 22 | 140 | 33 | 147 | 9.80e-22 | 94.4 |
| MS.gene22987.t1 | MTR_1g083310 | 55.056 | 89 | 32 | 2 | 1 | 88 | 1 | 82 | 1.06e-21 | 94.7 |
| MS.gene22987.t1 | MTR_1g082650 | 57.143 | 70 | 30 | 0 | 17 | 86 | 5 | 74 | 1.57e-19 | 89.0 |
| MS.gene22987.t1 | MTR_2g022240 | 61.429 | 70 | 27 | 0 | 17 | 86 | 5 | 74 | 9.53e-18 | 83.6 |
| MS.gene22987.t1 | MTR_3g067750 | 48.611 | 72 | 37 | 0 | 17 | 88 | 7 | 78 | 9.04e-16 | 75.1 |
| MS.gene22987.t1 | MTR_1g030630 | 43.478 | 69 | 39 | 0 | 22 | 90 | 25 | 93 | 1.50e-14 | 70.1 |
| MS.gene22987.t1 | MTR_4g073040 | 44.444 | 72 | 39 | 1 | 20 | 90 | 26 | 97 | 1.67e-14 | 70.1 |
| MS.gene22987.t1 | MTR_3g087770 | 47.887 | 71 | 37 | 0 | 20 | 90 | 28 | 98 | 2.42e-14 | 69.7 |
| MS.gene22987.t1 | MTR_8g091420 | 47.692 | 65 | 34 | 0 | 26 | 90 | 33 | 97 | 1.91e-13 | 67.0 |
| MS.gene22987.t1 | MTR_5g025150 | 42.424 | 66 | 38 | 0 | 22 | 87 | 23 | 88 | 2.70e-13 | 66.6 |
| MS.gene22987.t1 | MTR_7g013660 | 40.000 | 70 | 42 | 0 | 19 | 88 | 1 | 70 | 4.44e-13 | 65.5 |
| MS.gene22987.t1 | MTR_3g073670 | 33.010 | 103 | 56 | 2 | 26 | 115 | 30 | 132 | 1.91e-12 | 64.3 |
| MS.gene22987.t1 | MTR_1g092670 | 40.260 | 77 | 45 | 1 | 19 | 94 | 1 | 77 | 4.00e-12 | 61.2 |
| MS.gene22987.t1 | MTR_3g117890 | 37.500 | 72 | 44 | 1 | 20 | 90 | 24 | 95 | 5.96e-12 | 63.2 |
| MS.gene22987.t1 | MTR_7g083060 | 41.429 | 70 | 40 | 1 | 22 | 90 | 24 | 93 | 5.97e-11 | 60.1 |
| MS.gene22987.t1 | MTR_5g022620 | 35.955 | 89 | 47 | 2 | 20 | 98 | 27 | 115 | 5.98e-11 | 60.5 |
| MS.gene22987.t1 | MTR_6g026890 | 33.766 | 77 | 46 | 1 | 11 | 87 | 10 | 81 | 7.21e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22987.t1 | AT3G06130 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 4.92e-24 | 100 |
| MS.gene22987.t1 | AT5G27690 | 59.155 | 71 | 29 | 0 | 17 | 87 | 25 | 95 | 5.49e-24 | 100 |
| MS.gene22987.t1 | AT3G06130 | 65.714 | 70 | 24 | 0 | 17 | 86 | 5 | 74 | 6.72e-24 | 101 |
| MS.gene22987.t1 | AT5G19090 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 6.56e-23 | 98.6 |
| MS.gene22987.t1 | AT5G19090 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 6.56e-23 | 98.6 |
| MS.gene22987.t1 | AT5G19090 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 1.13e-22 | 98.6 |
| MS.gene22987.t1 | AT5G19090 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 1.13e-22 | 98.6 |
| MS.gene22987.t1 | AT5G19090 | 64.286 | 70 | 25 | 0 | 17 | 86 | 5 | 74 | 1.13e-22 | 98.6 |
| MS.gene22987.t1 | AT1G23000 | 45.455 | 99 | 46 | 1 | 16 | 106 | 7 | 105 | 2.85e-21 | 92.8 |
| MS.gene22987.t1 | AT1G23000 | 45.455 | 99 | 46 | 1 | 16 | 106 | 67 | 165 | 6.44e-21 | 92.4 |
| MS.gene22987.t1 | AT1G56210 | 54.286 | 70 | 32 | 0 | 21 | 90 | 39 | 108 | 7.24e-20 | 89.0 |
| MS.gene22987.t1 | AT3G05220 | 55.714 | 70 | 31 | 0 | 17 | 86 | 5 | 74 | 1.93e-18 | 85.9 |
| MS.gene22987.t1 | AT5G37860 | 48.611 | 72 | 37 | 0 | 22 | 93 | 10 | 81 | 1.77e-15 | 75.1 |
| MS.gene22987.t1 | AT1G71050 | 42.029 | 69 | 40 | 0 | 22 | 90 | 28 | 96 | 2.12e-13 | 67.0 |
| MS.gene22987.t1 | AT3G56240 | 43.939 | 66 | 37 | 0 | 22 | 87 | 3 | 68 | 3.45e-12 | 62.8 |
| MS.gene22987.t1 | AT3G56240 | 43.939 | 66 | 37 | 0 | 22 | 87 | 3 | 68 | 3.45e-12 | 62.8 |
| MS.gene22987.t1 | AT1G06330 | 45.902 | 61 | 33 | 0 | 26 | 86 | 6 | 66 | 4.53e-12 | 63.2 |
| MS.gene22987.t1 | AT4G38580 | 40.278 | 72 | 42 | 1 | 20 | 90 | 24 | 95 | 4.59e-12 | 63.5 |
| MS.gene22987.t1 | AT4G38580 | 40.278 | 72 | 42 | 1 | 20 | 90 | 24 | 95 | 4.59e-12 | 63.5 |
| MS.gene22987.t1 | AT3G56891 | 43.548 | 62 | 35 | 0 | 26 | 87 | 20 | 81 | 1.14e-11 | 62.8 |
| MS.gene22987.t1 | AT3G56891 | 43.103 | 58 | 33 | 0 | 30 | 87 | 1 | 58 | 1.45e-11 | 61.6 |
| MS.gene22987.t1 | AT4G08570 | 38.889 | 72 | 43 | 1 | 20 | 90 | 24 | 95 | 2.36e-11 | 61.2 |
| MS.gene22987.t1 | AT1G22990 | 41.429 | 70 | 40 | 1 | 22 | 90 | 29 | 98 | 2.58e-11 | 61.2 |
| MS.gene22987.t1 | AT5G66110 | 37.838 | 74 | 45 | 1 | 20 | 92 | 17 | 90 | 3.08e-11 | 60.8 |
| MS.gene22987.t1 | AT5G66110 | 37.838 | 74 | 45 | 1 | 20 | 92 | 17 | 90 | 3.08e-11 | 60.8 |
| MS.gene22987.t1 | AT1G66240 | 38.462 | 65 | 40 | 0 | 22 | 86 | 33 | 97 | 4.25e-11 | 59.3 |
| MS.gene22987.t1 | AT1G22990 | 40.299 | 67 | 39 | 1 | 25 | 90 | 27 | 93 | 4.43e-11 | 60.5 |
Find 73 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGAGGGTGGAGGAGGTGG+AGG | 0.275287 | 7.2:+6454743 | None:intergenic |
| GCTTCATTAACTCCAAATAA+TGG | 0.285010 | 7.2:-6455040 | MS.gene22987:CDS |
| CAGCACAAGGTTACAGTTAC+TGG | 0.314426 | 7.2:-6455394 | MS.gene22987:CDS |
| AAGAGTCAAGAAAATTCTTC+AGG | 0.319616 | 7.2:-6456091 | MS.gene22987:CDS |
| TGAAACTGAAAATATTAATA+AGG | 0.330846 | 7.2:-6455257 | MS.gene22987:CDS |
| TAGTACATATGTGGTGGATA+TGG | 0.331565 | 7.2:+6454896 | None:intergenic |
| TGTTGATCAGCAGCTGGTTT+GGG | 0.352102 | 7.2:+6456322 | None:intergenic |
| ATTAGAAACACTCAAGTATC+AGG | 0.357551 | 7.2:-6456287 | MS.gene22987:intron |
| ATCAAGAAGCTTTCAAGATC+AGG | 0.368275 | 7.2:-6455349 | MS.gene22987:CDS |
| TTGTTGATCAGCAGCTGGTT+TGG | 0.374527 | 7.2:+6456321 | None:intergenic |
| GGATGAGAGGGTGGAGGAGG+TGG | 0.374539 | 7.2:+6454740 | None:intergenic |
| ATACTTGAGTGTTTCTAATC+CGG | 0.381184 | 7.2:+6456291 | None:intergenic |
| AGCACTTCTTCTTATTATGT+TGG | 0.397233 | 7.2:-6454806 | MS.gene22987:CDS |
| GCTACTGCTGGAGGAGGGTG+TGG | 0.422467 | 7.2:+6454872 | None:intergenic |
| TAAGAAGAAGTGCTAGAAAC+AGG | 0.428358 | 7.2:+6454815 | None:intergenic |
| ATTGTAGCTTTGTCACATAA+TGG | 0.433393 | 7.2:+6454661 | None:intergenic |
| TGATGACCATAGCTGTTGAT+TGG | 0.433870 | 7.2:+6454719 | None:intergenic |
| TTAGCATGCATGGGCATGAC+AGG | 0.444727 | 7.2:+6454779 | None:intergenic |
| GGTGGTGCTACTGCTGGAGG+AGG | 0.445055 | 7.2:+6454866 | None:intergenic |
| CCAGCAGTAGCACCACCCTA+TGG | 0.447198 | 7.2:-6454860 | MS.gene22987:CDS |
| ATTGGATGAGAGGGTGGAGG+AGG | 0.450211 | 7.2:+6454737 | None:intergenic |
| GCATGCTGCTGAGGAAGTAC+TGG | 0.452781 | 7.2:+6454926 | None:intergenic |
| GATCACAAAGAAGGTCATAA+TGG | 0.457322 | 7.2:-6455136 | MS.gene22987:CDS |
| ACAGAACAGAAATTGATTCT+CGG | 0.466079 | 7.2:-6455417 | MS.gene22987:CDS |
| GGAGGCATAATAATTTCCTT+AGG | 0.468365 | 7.2:+6454947 | None:intergenic |
| AGTACATATGTGGTGGATAT+GGG | 0.469995 | 7.2:+6454897 | None:intergenic |
| AAAATTCTTCAGGGCATTGA+AGG | 0.479304 | 7.2:-6456081 | MS.gene22987:intron |
| TACTTGAGTGTTTCTAATCC+GGG | 0.491731 | 7.2:+6456292 | None:intergenic |
| CATAATAATTTCCTTAGGAA+TGG | 0.491755 | 7.2:+6454952 | None:intergenic |
| GGAACTTGTTGATCAGCAGC+TGG | 0.496704 | 7.2:+6456316 | None:intergenic |
| CCATAGGGTGGTGCTACTGC+TGG | 0.507340 | 7.2:+6454860 | None:intergenic |
| TCTAGAGTAATTAGCATGCA+TGG | 0.510452 | 7.2:+6454769 | None:intergenic |
| AAATATTAATAAGGAGATCA+AGG | 0.511134 | 7.2:-6455248 | MS.gene22987:CDS |
| CAGGGAAATCAGTAGAACTT+TGG | 0.517951 | 7.2:-6455330 | MS.gene22987:CDS |
| GAAGATTCAGATCACAAAGA+AGG | 0.518960 | 7.2:-6455145 | MS.gene22987:CDS |
| GAGAGGGTGGAGGAGGTGGA+GGG | 0.528150 | 7.2:+6454744 | None:intergenic |
| TCAAGAAGCTTTCAAGATCA+GGG | 0.538607 | 7.2:-6455348 | MS.gene22987:CDS |
| TAGGGTGGTGCTACTGCTGG+AGG | 0.544543 | 7.2:+6454863 | None:intergenic |
| GTGGTGCTACTGCTGGAGGA+GGG | 0.547041 | 7.2:+6454867 | None:intergenic |
| CAGCAGTAGCACCACCCTAT+GGG | 0.554674 | 7.2:-6454859 | MS.gene22987:CDS |
| TTGATTGGATGAGAGGGTGG+AGG | 0.558090 | 7.2:+6454734 | None:intergenic |
| GATAATAACAATAAAAGTGA+GGG | 0.562957 | 7.2:-6455112 | MS.gene22987:CDS |
| TGTGTTATAGCTTAACCCAT+AGG | 0.565506 | 7.2:+6454844 | None:intergenic |
| GTGTTATAGCTTAACCCATA+GGG | 0.565951 | 7.2:+6454845 | None:intergenic |
| ATAGATGATGCAGGTGATGA+TGG | 0.566616 | 7.2:-6455172 | MS.gene22987:CDS |
| AGAGTCAAGAAAATTCTTCA+GGG | 0.568811 | 7.2:-6456090 | MS.gene22987:CDS |
| AAAAGTGAATGCCATTCCTA+AGG | 0.569713 | 7.2:-6454963 | MS.gene22987:CDS |
| TTAACTCCAAATAATGGAGG+AGG | 0.576698 | 7.2:-6455034 | MS.gene22987:CDS |
| GTTGGTGAAAGTAGTCATGA+AGG | 0.580432 | 7.2:-6455199 | MS.gene22987:CDS |
| CTAGAGTAATTAGCATGCAT+GGG | 0.582346 | 7.2:+6454770 | None:intergenic |
| GGGTTATAAGCATGCTGCTG+AGG | 0.582921 | 7.2:+6454917 | None:intergenic |
| GCTGATCAACAAGTTCCTCC+CGG | 0.583544 | 7.2:-6456310 | MS.gene22987:CDS |
| TCTCATCCAATCAACAGCTA+TGG | 0.586584 | 7.2:-6454725 | MS.gene22987:CDS |
| TAGCATGCATGGGCATGACA+GGG | 0.586920 | 7.2:+6454780 | None:intergenic |
| AATGATCATGAAGAATATGA+AGG | 0.589711 | 7.2:-6454695 | MS.gene22987:CDS |
| TGATAATAACAATAAAAGTG+AGG | 0.591536 | 7.2:-6455113 | MS.gene22987:CDS |
| GATCATGAAGAATATGAAGG+TGG | 0.598780 | 7.2:-6454692 | MS.gene22987:CDS |
| CTGTTGATTGGATGAGAGGG+TGG | 0.603779 | 7.2:+6454731 | None:intergenic |
| AATTGATTCTCGGCAGCACA+AGG | 0.604243 | 7.2:-6455407 | MS.gene22987:CDS |
| AATAACAATAAAAGTGAGGG+TGG | 0.610406 | 7.2:-6455109 | MS.gene22987:CDS |
| GGGTGTGGATAGTACATATG+TGG | 0.614125 | 7.2:+6454887 | None:intergenic |
| TGCTGCTGAGGAAGTACTGG+AGG | 0.614651 | 7.2:+6454929 | None:intergenic |
| AAAGTCTTGATCCACTGCGA+CGG | 0.628481 | 7.2:-6456123 | MS.gene22987:CDS |
| AAGAACAGTACTGAACAAGT+TGG | 0.630407 | 7.2:-6455217 | MS.gene22987:CDS |
| TGTGGATAGTACATATGTGG+TGG | 0.633196 | 7.2:+6454890 | None:intergenic |
| GAAGGTTGTATAGATGATGC+AGG | 0.636887 | 7.2:-6455181 | MS.gene22987:CDS |
| ATAGCTGTTGATTGGATGAG+AGG | 0.644634 | 7.2:+6454727 | None:intergenic |
| AGCATGCATGGGCATGACAG+GGG | 0.652187 | 7.2:+6454781 | None:intergenic |
| TAGCTGTTGATTGGATGAGA+GGG | 0.658334 | 7.2:+6454728 | None:intergenic |
| TCATTAACTCCAAATAATGG+AGG | 0.678633 | 7.2:-6455037 | MS.gene22987:CDS |
| TTATAGCTTAACCCATAGGG+TGG | 0.684519 | 7.2:+6454848 | None:intergenic |
| TTGAGTGTTTCTAATCCGGG+AGG | 0.702857 | 7.2:+6456295 | None:intergenic |
| GGTTACAGTTACTGGCAACG+TGG | 0.704095 | 7.2:-6455386 | MS.gene22987:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATCTTCAAAATCAAA+AGG | - | chr7.2:6455724-6455743 | MS.gene22987:intron | 15.0% |
| !! | TAATAGCTTATTAAACATAT+TGG | - | chr7.2:6455218-6455237 | MS.gene22987:CDS | 15.0% |
| !! | TGAAACTGAAAATATTAATA+AGG | - | chr7.2:6455747-6455766 | MS.gene22987:intron | 15.0% |
| !! | AAATATTAATAAGGAGATCA+AGG | - | chr7.2:6455756-6455775 | MS.gene22987:intron | 20.0% |
| !! | AAGAAAAAGAAAAACAAAAG+TGG | - | chr7.2:6455937-6455956 | MS.gene22987:intron | 20.0% |
| !! | CTGATAAAATAAATACCATT+AGG | + | chr7.2:6455160-6455179 | None:intergenic | 20.0% |
| !! | GATAATAACAATAAAAGTGA+GGG | - | chr7.2:6455892-6455911 | MS.gene22987:intron | 20.0% |
| !! | TGATAATAACAATAAAAGTG+AGG | - | chr7.2:6455891-6455910 | MS.gene22987:intron | 20.0% |
| !!! | TATATCATAGTTCTAAATTG+CGG | + | chr7.2:6455109-6455128 | None:intergenic | 20.0% |
| ! | AATGATCATGAAGAATATGA+AGG | - | chr7.2:6456309-6456328 | MS.gene22987:CDS | 25.0% |
| ! | CATAATAATTTCCTTAGGAA+TGG | + | chr7.2:6456055-6456074 | None:intergenic | 25.0% |
| ! | CATGTAATTAACTAAATTCC+AGG | + | chr7.2:6455291-6455310 | None:intergenic | 25.0% |
| !! | ATATTTTTCTGAGTACCTAA+TGG | - | chr7.2:6455142-6455161 | MS.gene22987:CDS | 25.0% |
| !!! | ACGTATTGATTAAAGTCTAA+CGG | - | chr7.2:6455526-6455545 | MS.gene22987:intron | 25.0% |
| !!! | GATTTTTTATCTTTCTTCTC+AGG | + | chr7.2:6455712-6455731 | None:intergenic | 25.0% |
| AAGAGTCAAGAAAATTCTTC+AGG | - | chr7.2:6454913-6454932 | MS.gene22987:CDS | 30.0% | |
| AATAACAATAAAAGTGAGGG+TGG | - | chr7.2:6455895-6455914 | MS.gene22987:intron | 30.0% | |
| AATGAAGACAAATACAACTG+AGG | - | chr7.2:6455023-6455042 | MS.gene22987:CDS | 30.0% | |
| AGAGTCAAGAAAATTCTTCA+GGG | - | chr7.2:6454914-6454933 | MS.gene22987:CDS | 30.0% | |
| AGCACTTCTTCTTATTATGT+TGG | - | chr7.2:6456198-6456217 | MS.gene22987:intron | 30.0% | |
| ATGATTGTCACGGATATATA+GGG | - | chr7.2:6455560-6455579 | MS.gene22987:intron | 30.0% | |
| ATTAGAAACACTCAAGTATC+AGG | - | chr7.2:6454717-6454736 | MS.gene22987:CDS | 30.0% | |
| ATTGACATGATCAATAAACC+TGG | - | chr7.2:6455270-6455289 | MS.gene22987:CDS | 30.0% | |
| CAATTATGGCTGCAATATAA+AGG | + | chr7.2:6455076-6455095 | None:intergenic | 30.0% | |
| GCTTCATTAACTCCAAATAA+TGG | - | chr7.2:6455964-6455983 | MS.gene22987:intron | 30.0% | |
| TATATCCGTGACAATCATAA+CGG | + | chr7.2:6455558-6455577 | None:intergenic | 30.0% | |
| TATGATTGTCACGGATATAT+AGG | - | chr7.2:6455559-6455578 | MS.gene22987:intron | 30.0% | |
| TCATTAACTCCAAATAATGG+AGG | - | chr7.2:6455967-6455986 | MS.gene22987:intron | 30.0% | |
| TTAGAAGACTAACACTTAAG+TGG | + | chr7.2:6455201-6455220 | None:intergenic | 30.0% | |
| TTATATTGCAGCCATAATTG+TGG | - | chr7.2:6455076-6455095 | MS.gene22987:CDS | 30.0% | |
| ! | ACAGAACAGAAATTGATTCT+CGG | - | chr7.2:6455587-6455606 | MS.gene22987:intron | 30.0% |
| ! | ATACTTGAGTGTTTCTAATC+CGG | + | chr7.2:6454716-6454735 | None:intergenic | 30.0% |
| ! | TTTTTATCTTTCTTCTCAGG+AGG | + | chr7.2:6455709-6455728 | None:intergenic | 30.0% |
| !!! | TTCACTTTTTCAAGTACTTG+TGG | + | chr7.2:6456030-6456049 | None:intergenic | 30.0% |
| AAAAGTGAATGCCATTCCTA+AGG | - | chr7.2:6456041-6456060 | MS.gene22987:intron | 35.0% | |
| AGCAAAGAATAGATTCAGGA+GGG | + | chr7.2:6454798-6454817 | None:intergenic | 35.0% | |
| ATCAAGAAGCTTTCAAGATC+AGG | - | chr7.2:6455655-6455674 | MS.gene22987:intron | 35.0% | |
| ATCCACTTCAGACTTTATCA+TGG | - | chr7.2:6455346-6455365 | MS.gene22987:CDS | 35.0% | |
| ATCCATGATAAAGTCTGAAG+TGG | + | chr7.2:6455351-6455370 | None:intergenic | 35.0% | |
| CTAGAGTAATTAGCATGCAT+GGG | + | chr7.2:6456237-6456256 | None:intergenic | 35.0% | |
| GAAGATTCAGATCACAAAGA+AGG | - | chr7.2:6455859-6455878 | MS.gene22987:intron | 35.0% | |
| GATCACAAAGAAGGTCATAA+TGG | - | chr7.2:6455868-6455887 | MS.gene22987:intron | 35.0% | |
| GATCATGAAGAATATGAAGG+TGG | - | chr7.2:6456312-6456331 | MS.gene22987:CDS | 35.0% | |
| GTGTTATAGCTTAACCCATA+GGG | + | chr7.2:6456162-6456181 | None:intergenic | 35.0% | |
| GTTGAGCAAAGAATAGATTC+AGG | + | chr7.2:6454802-6454821 | None:intergenic | 35.0% | |
| TCAAGAAGCTTTCAAGATCA+GGG | - | chr7.2:6455656-6455675 | MS.gene22987:intron | 35.0% | |
| TCAATACGTAAGAGTCATAC+AGG | + | chr7.2:6455515-6455534 | None:intergenic | 35.0% | |
| TGATTGTCACGGATATATAG+GGG | - | chr7.2:6455561-6455580 | MS.gene22987:intron | 35.0% | |
| TGTGTTATAGCTTAACCCAT+AGG | + | chr7.2:6456163-6456182 | None:intergenic | 35.0% | |
| TTGGTTAAACAGTAGTGTCT+TGG | - | chr7.2:6455237-6455256 | MS.gene22987:CDS | 35.0% | |
| ! | AAGAACAGTACTGAACAAGT+TGG | - | chr7.2:6455787-6455806 | MS.gene22987:intron | 35.0% |
| ! | GGAGGCATAATAATTTCCTT+AGG | + | chr7.2:6456060-6456079 | None:intergenic | 35.0% |
| ! | TACTTGAGTGTTTCTAATCC+GGG | + | chr7.2:6454715-6454734 | None:intergenic | 35.0% |
| ! | TCTAGAGTAATTAGCATGCA+TGG | + | chr7.2:6456238-6456257 | None:intergenic | 35.0% |
| ! | TCTTTTCCTCCTCCATTATT+TGG | + | chr7.2:6455979-6455998 | None:intergenic | 35.0% |
| ! | TTAACTCCAAATAATGGAGG+AGG | - | chr7.2:6455970-6455989 | MS.gene22987:intron | 35.0% |
| !! | AAAATTCTTCAGGGCATTGA+AGG | - | chr7.2:6454923-6454942 | MS.gene22987:CDS | 35.0% |
| !! | AGTACATATGTGGTGGATAT+GGG | + | chr7.2:6456110-6456129 | None:intergenic | 35.0% |
| !! | TAAGAAGAAGTGCTAGAAAC+AGG | + | chr7.2:6456192-6456211 | None:intergenic | 35.0% |
| !! | TAGTACATATGTGGTGGATA+TGG | + | chr7.2:6456111-6456130 | None:intergenic | 35.0% |
| !! | TTAGTAGACTTGTTAGAGCA+AGG | + | chr7.2:6454770-6454789 | None:intergenic | 35.0% |
| ATAGATGATGCAGGTGATGA+TGG | - | chr7.2:6455832-6455851 | MS.gene22987:intron | 40.0% | |
| ATATACACACACACACACCA+TGG | - | chr7.2:6454953-6454972 | MS.gene22987:CDS | 40.0% | |
| ATGTGATCATTCTACAGACG+TGG | - | chr7.2:6454852-6454871 | MS.gene22987:CDS | 40.0% | |
| CAGGGAAATCAGTAGAACTT+TGG | - | chr7.2:6455674-6455693 | MS.gene22987:intron | 40.0% | |
| GAAGACAAATACAACTGAGG+CGG | - | chr7.2:6455026-6455045 | MS.gene22987:CDS | 40.0% | |
| GAAGGTTGTATAGATGATGC+AGG | - | chr7.2:6455823-6455842 | MS.gene22987:intron | 40.0% | |
| GAGCAAAGAATAGATTCAGG+AGG | + | chr7.2:6454799-6454818 | None:intergenic | 40.0% | |
| GTTAAACAGTAGTGTCTTGG+CGG | - | chr7.2:6455240-6455259 | MS.gene22987:CDS | 40.0% | |
| TCAAGTTTGCAACATAACCG+CGG | + | chr7.2:6454992-6455011 | None:intergenic | 40.0% | |
| TCCAACCGTTATGATTGTCA+CGG | - | chr7.2:6455550-6455569 | MS.gene22987:intron | 40.0% | |
| TCTCATCCAATCAACAGCTA+TGG | - | chr7.2:6456279-6456298 | MS.gene22987:intron | 40.0% | |
| TGATGACCATAGCTGTTGAT+TGG | + | chr7.2:6456288-6456307 | None:intergenic | 40.0% | |
| TGTGATCATTCTACAGACGT+GGG | - | chr7.2:6454853-6454872 | MS.gene22987:CDS | 40.0% | |
| TGTGGATAGTACATATGTGG+TGG | + | chr7.2:6456117-6456136 | None:intergenic | 40.0% | |
| TTAAACAGTAGTGTCTTGGC+GGG | - | chr7.2:6455241-6455260 | MS.gene22987:CDS | 40.0% | |
| TTATAGCTTAACCCATAGGG+TGG | + | chr7.2:6456159-6456178 | None:intergenic | 40.0% | |
| ! | ATAGCTGTTGATTGGATGAG+AGG | + | chr7.2:6456280-6456299 | None:intergenic | 40.0% |
| ! | GTTGGTGAAAGTAGTCATGA+AGG | - | chr7.2:6455805-6455824 | MS.gene22987:intron | 40.0% |
| ! | TAGCTGTTGATTGGATGAGA+GGG | + | chr7.2:6456279-6456298 | None:intergenic | 40.0% |
| AAAGTCTTGATCCACTGCGA+CGG | - | chr7.2:6454881-6454900 | MS.gene22987:CDS | 45.0% | |
| AACTGAGGCGGCTGTAATTT+CGG | - | chr7.2:6455038-6455057 | MS.gene22987:CDS | 45.0% | |
| CAGCACAAGGTTACAGTTAC+TGG | - | chr7.2:6455610-6455629 | MS.gene22987:intron | 45.0% | |
| GGGTGTGGATAGTACATATG+TGG | + | chr7.2:6456120-6456139 | None:intergenic | 45.0% | |
| TCCGTGACAATCATAACGGT+TGG | + | chr7.2:6455554-6455573 | None:intergenic | 45.0% | |
| TTGTTGATCAGCAGCTGGTT+TGG | + | chr7.2:6454686-6454705 | None:intergenic | 45.0% | |
| ! | AATTGATTCTCGGCAGCACA+AGG | - | chr7.2:6455597-6455616 | MS.gene22987:intron | 45.0% |
| ! | GCGGACTACAACCACAATTA+TGG | + | chr7.2:6455090-6455109 | None:intergenic | 45.0% |
| ! | TGTTGATCAGCAGCTGGTTT+GGG | + | chr7.2:6454685-6454704 | None:intergenic | 45.0% |
| ! | TTCTTCTCAGGAGGCTTTTC+TGG | + | chr7.2:6455700-6455719 | None:intergenic | 45.0% |
| ! | TTGAGTGTTTCTAATCCGGG+AGG | + | chr7.2:6454712-6454731 | None:intergenic | 45.0% |
| GCTGATCAACAAGTTCCTCC+CGG | - | chr7.2:6454694-6454713 | MS.gene22987:CDS | 50.0% | |
| GGGTTATAAGCATGCTGCTG+AGG | + | chr7.2:6456090-6456109 | None:intergenic | 50.0% | |
| GGTTACAGTTACTGGCAACG+TGG | - | chr7.2:6455618-6455637 | MS.gene22987:intron | 50.0% | |
| TAGCATGCATGGGCATGACA+GGG | + | chr7.2:6456227-6456246 | None:intergenic | 50.0% | |
| TTAGCATGCATGGGCATGAC+AGG | + | chr7.2:6456228-6456247 | None:intergenic | 50.0% | |
| TTGATTGGATGAGAGGGTGG+AGG | + | chr7.2:6456273-6456292 | None:intergenic | 50.0% | |
| ! | CTGTTGATTGGATGAGAGGG+TGG | + | chr7.2:6456276-6456295 | None:intergenic | 50.0% |
| !! | ATGGTTCTGAATTGCGACCG+CGG | - | chr7.2:6454972-6454991 | MS.gene22987:CDS | 50.0% |
| !! | GGAACTTGTTGATCAGCAGC+TGG | + | chr7.2:6454691-6454710 | None:intergenic | 50.0% |
| AGCATGCATGGGCATGACAG+GGG | + | chr7.2:6456226-6456245 | None:intergenic | 55.0% | |
| ATTGGATGAGAGGGTGGAGG+AGG | + | chr7.2:6456270-6456289 | None:intergenic | 55.0% | |
| CAGCAGTAGCACCACCCTAT+GGG | - | chr7.2:6456145-6456164 | MS.gene22987:intron | 55.0% | |
| GCGGTCGCAATTCAGAACCA+TGG | + | chr7.2:6454973-6454992 | None:intergenic | 55.0% | |
| ! | AGTAGTGTCTTGGCGGGTCT+TGG | - | chr7.2:6455247-6455266 | MS.gene22987:CDS | 55.0% |
| ! | GCATGCTGCTGAGGAAGTAC+TGG | + | chr7.2:6456081-6456100 | None:intergenic | 55.0% |
| ! | TTTTTGTGCAGCCGTCGCAG+TGG | + | chr7.2:6454895-6454914 | None:intergenic | 55.0% |
| !! | TGCTGCTGAGGAAGTACTGG+AGG | + | chr7.2:6456078-6456097 | None:intergenic | 55.0% |
| CCAGCAGTAGCACCACCCTA+TGG | - | chr7.2:6456144-6456163 | MS.gene22987:intron | 60.0% | |
| !! | CCATAGGGTGGTGCTACTGC+TGG | + | chr7.2:6456147-6456166 | None:intergenic | 60.0% |
| !! | GTGGTGCTACTGCTGGAGGA+GGG | + | chr7.2:6456140-6456159 | None:intergenic | 60.0% |
| !! | TAGGGTGGTGCTACTGCTGG+AGG | + | chr7.2:6456144-6456163 | None:intergenic | 60.0% |
| GAGAGGGTGGAGGAGGTGGA+GGG | + | chr7.2:6456263-6456282 | None:intergenic | 65.0% | |
| GCTACTGCTGGAGGAGGGTG+TGG | + | chr7.2:6456135-6456154 | None:intergenic | 65.0% | |
| GGATGAGAGGGTGGAGGAGG+TGG | + | chr7.2:6456267-6456286 | None:intergenic | 65.0% | |
| TGAGAGGGTGGAGGAGGTGG+AGG | + | chr7.2:6456264-6456283 | None:intergenic | 65.0% | |
| !! | GGTGGTGCTACTGCTGGAGG+AGG | + | chr7.2:6456141-6456160 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 6454673 | 6456353 | 6454673 | ID=MS.gene22987 |
| chr7.2 | mRNA | 6454673 | 6456353 | 6454673 | ID=MS.gene22987.t1;Parent=MS.gene22987 |
| chr7.2 | exon | 6456288 | 6456353 | 6456288 | ID=MS.gene22987.t1.exon1;Parent=MS.gene22987.t1 |
| chr7.2 | CDS | 6456288 | 6456353 | 6456288 | ID=cds.MS.gene22987.t1;Parent=MS.gene22987.t1 |
| chr7.2 | exon | 6456082 | 6456157 | 6456082 | ID=MS.gene22987.t1.exon2;Parent=MS.gene22987.t1 |
| chr7.2 | CDS | 6456082 | 6456157 | 6456082 | ID=cds.MS.gene22987.t1;Parent=MS.gene22987.t1 |
| chr7.2 | exon | 6454673 | 6455445 | 6454673 | ID=MS.gene22987.t1.exon3;Parent=MS.gene22987.t1 |
| chr7.2 | CDS | 6454673 | 6455445 | 6454673 | ID=cds.MS.gene22987.t1;Parent=MS.gene22987.t1 |
| Gene Sequence |
| Protein sequence |
